RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16455
(82 letters)
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1
PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L*
1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O*
1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Length = 135
Score = 59.3 bits (143), Expect = 4e-13
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRGVYD V + +
Sbjct: 60 LTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKK 115
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 54.7 bits (131), Expect = 2e-11
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 22 FAKGKEMVAYIPGEG--HNLQEHNIVLC-----KVGRVKDLPGVKIK--CVRGVYDLPHV 72
K++ A++P +G + L E++ VL + V D+PGV+ K CV+G+ L
Sbjct: 76 RKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALF 135
Query: 73 VKKTQ 77
K +
Sbjct: 136 KGKKE 140
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 47.4 bits (112), Expect = 1e-08
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 2 HMKGPHYKKRPPRQPLLGKPFAKGKEMVAYIPGEG--HNLQEHNIVL----CKVGRVK-D 54
R+ + + GK++ A++P +G + + E++ VL + G+ K D
Sbjct: 57 LGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGD 116
Query: 55 LPGVKIKCVRGVY 67
+PGV+ K V+
Sbjct: 117 IPGVRFKVVKVSG 129
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 30.5 bits (69), Expect = 0.042
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 17/81 (20%)
Query: 14 RQPLLGKPFAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPG-------------VKI 60
+ P F M + L++ + V + + D+ G K+
Sbjct: 156 KNPEYNTSFNDA--MASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL 213
Query: 61 KCVRGVYDLPHVVKKTQLTPG 81
KC+ V+D P VV+ +
Sbjct: 214 KCI--VFDRPQVVENLSGSNN 232
>1b35_B CRPV, protein (cricket paralysis virus, VP2); insect picorna-like
virus, icosahedral virus; 2.40A {Cricket paralysis
virus} SCOP: b.121.4.1
Length = 255
Score = 27.8 bits (61), Expect = 0.29
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 19 GKPFAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKI 60
+PF +G+ M+ YIP + ++ + P +
Sbjct: 119 SQPFQQGRLMLQYIPYAQYMPNRVTLINETLQGRSGCPRTDL 160
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 27.9 bits (62), Expect = 0.32
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 17/81 (20%)
Query: 14 RQPLLGKPFAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGV-------------KI 60
+ + + F K MV E + E + + D+ G I
Sbjct: 177 KDKKMNQIFNKS--MVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLI 234
Query: 61 KCVRGVYDLPHVVKKTQLTPG 81
K + +DLP V++ G
Sbjct: 235 KGI--NFDLPQVIENAPPLSG 253
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 27.9 bits (62), Expect = 0.32
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 60 IKCVRGVYDLPHVVKKTQLTPG 81
I + +DLPHV++ G
Sbjct: 228 INAI--NFDLPHVIQDAPAFSG 247
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 27.9 bits (62), Expect = 0.36
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 60 IKCVRGVYDLPHVVKKTQLTPG 81
IK V +DLPHV+ + PG
Sbjct: 226 IKGV--NFDLPHVISEAPQFPG 245
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 26.9 bits (60), Expect = 0.64
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 60 IKCVRGVYDLPHVVKKTQLT 79
++ V + D VV + +L
Sbjct: 209 LQGV--LLDRAEVVARHRLD 226
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 26.4 bits (59), Expect = 1.1
Identities = 2/14 (14%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 60 IKCVRGVYDLPHVV 73
+ V + D +
Sbjct: 192 ARGV--MLDREGSL 203
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 26.1 bits (58), Expect = 1.1
Identities = 2/14 (14%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 60 IKCVRGVYDLPHVV 73
+ V ++ V
Sbjct: 208 VSAT--VLEMAGTV 219
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 26.2 bits (58), Expect = 1.2
Identities = 1/14 (7%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 60 IKCVRGVYDLPHVV 73
++ + +L
Sbjct: 207 LRGT--LVELAGPA 218
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 26.2 bits (58), Expect = 1.3
Identities = 2/18 (11%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 60 IKCVRGVYDLPHVVKKTQ 77
++ + + P V ++ +
Sbjct: 227 LRGT--LLERPPVAEEAR 242
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 26.2 bits (58), Expect = 1.4
Identities = 2/23 (8%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 60 IKCVRGVYDLPHVVKKTQLTPGK 82
+ + +LP + +
Sbjct: 215 LDST--ILNLPGAIDLVNENAAE 235
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 25.7 bits (57), Expect = 1.6
Identities = 3/14 (21%), Positives = 4/14 (28%), Gaps = 2/14 (14%)
Query: 60 IKCVRGVYDLPHVV 73
+ V DL
Sbjct: 194 LSGT--VLDLQGPA 205
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 25.6 bits (56), Expect = 1.9
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 66 VYDLPHVVKKTQLTPG 81
V+D P VV
Sbjct: 222 VFDQPQVVGNLTGNEN 237
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 25.4 bits (56), Expect = 2.6
Identities = 2/23 (8%), Positives = 6/23 (26%), Gaps = 2/23 (8%)
Query: 60 IKCVRGVYDLPHVVKKTQLTPGK 82
+ D V++ +
Sbjct: 190 AEIF--GVDWASVLEVAKENARI 210
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 25.1 bits (55), Expect = 3.2
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 19 GKPFAKGKEMVAYIPGEGHNLQEHN 43
G+PF E++ Y PG H L +
Sbjct: 704 GQPF----ELMTY-PGAKHGLSGAD 723
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.143 0.451
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,289,618
Number of extensions: 63668
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 24
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)