RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16455
         (82 letters)



>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
           thermophilus [TaxId: 274]}
          Length = 118

 Score = 80.9 bits (200), Expect = 3e-22
 Identities = 33/56 (58%), Positives = 40/56 (71%)

Query: 22  FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
              G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V  + +
Sbjct: 56  LTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKK 111


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
           (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 27.5 bits (60), Expect = 0.14
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 23  AKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIK 61
           +    +V   P  G  L     VL    RV  +  +++ 
Sbjct: 279 SLNIPVVLSHPYVGQCLVGK--VLDGDFRVTGINALRVV 315


>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat
          proteins {Mengovirus [TaxId: 12107]}
          Length = 231

 Score = 24.4 bits (53), Expect = 2.0
 Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 7/34 (20%)

Query: 16 PLLGKPFAKGKEMVAYIPGEGHNLQEHNIVLCKV 49
          P+ GK          Y+ GE  +  E    + ++
Sbjct: 24 PIYGK-TPVAPAN--YMVGEYKDFLE----IAQI 50


>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
          echovirus 1 [TaxId: 46633]}
          Length = 239

 Score = 23.6 bits (51), Expect = 3.3
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 16 PLLGKPFAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 75
            + + F    EM  +IPGE  NL E    + +V  V  +       V  +      +  
Sbjct: 23 SAMPQ-FDVTPEM--HIPGEVRNLME----IAEVDSVMPINNDSAAKVSSMEAYRVEL-S 74

Query: 76 TQLTPGK 82
          T    G 
Sbjct: 75 TNTNAGT 81


>d1d4m3_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
          coxsackievirus A9 [TaxId: 12067]}
          Length = 238

 Score = 23.6 bits (51), Expect = 3.9
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 7/37 (18%)

Query: 16 PLLGKPFAKGKEMVAYIPGEGHNLQEHNIVLCKVGRV 52
            L + F     M   IPGE  NL E    + +V  V
Sbjct: 23 CALPQ-FDVTPSM--NIPGEVKNLME----IAEVDSV 52



 Score = 22.9 bits (49), Expect = 6.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 19  GKPFAKGKEMVAYIP 33
           G   A GK ++AY P
Sbjct: 122 GSAMATGKFLIAYSP 136


>d1pvc3_ b.121.4.1 (3:) Poliovirus coat proteins {Poliovirus type 3,
           strain Sabin [TaxId: 12086]}
          Length = 235

 Score = 23.3 bits (50), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 19  GKPFAKGKEMVAYIP 33
           G   A GK +VAY P
Sbjct: 122 GSMMATGKILVAYAP 136


>d1tme3_ b.121.4.1 (3:) Theilovirus capsid proteins {Theiler's
          murine encephalomyelitis virus, strain da [TaxId:
          12124]}
          Length = 232

 Score = 23.2 bits (50), Expect = 4.2
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 7/34 (20%)

Query: 16 PLLGKPFAKGKEMVAYIPGEGHNLQEHNIVLCKV 49
          P+ GK          Y+ GE  +L E    LCK+
Sbjct: 24 PIYGK-TISTPND--YMCGEFSDLLE----LCKL 50


>d1bev3_ b.121.4.1 (3:) Bovine enterovirus coat proteins {Bovine
          enterovirus, VG-5-27 [TaxId: 12064]}
          Length = 242

 Score = 23.3 bits (50), Expect = 5.1
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 9/39 (23%)

Query: 13 PRQ--PLLGKPFAKGKEMVAYIPGEGHNLQEHNIVLCKV 49
                +L   F    E+  +IPG+ +NL E    + +V
Sbjct: 18 EDCSPCILPD-FQPTPEI--FIPGKVNNLLE----IAQV 49


>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
           [TaxId: 11983]}
          Length = 492

 Score = 23.3 bits (50), Expect = 5.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 19  GKPFAKGKEMVAYIP 33
           G  F  GK +V+ IP
Sbjct: 87  GNAFTAGKIIVSCIP 101


>d1qqp3_ b.121.4.1 (3:) Aphthovirus (Foot-and-mouth disease virus)
          coat proteins {FMDV (Foot-and-mouth disease virus),
          strain bfs, 1860 [TaxId: 12110]}
          Length = 220

 Score = 22.9 bits (49), Expect = 5.4
 Identities = 4/21 (19%), Positives = 8/21 (38%), Gaps = 4/21 (19%)

Query: 29 VAYIPGEGHNLQEHNIVLCKV 49
             +PG   NL +    + + 
Sbjct: 34 RNQLPGRFTNLLD----VAEA 50


>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta
          subunit {Klebsiella pneumoniae [TaxId: 573]}
          Length = 113

 Score = 22.4 bits (48), Expect = 6.7
 Identities = 3/22 (13%), Positives = 6/22 (27%)

Query: 7  HYKKRPPRQPLLGKPFAKGKEM 28
           + + P   PL         + 
Sbjct: 71 THAQLPADAPLATGHVTDSDDQ 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.143    0.451 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,703
Number of extensions: 12816
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 14
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)