BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16456
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
           Escherichia Coli
 pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
           Escherichia Coli
 pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
           Escherichia Coli
 pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
           Escherichia Coli
          Length = 502

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 37  TSGRRGLTSGRKALTSGHRSLTSGRRGLTSGRKALTSGHRGLTSGHRSLTSGRRALTSG 95
           +  R GL +GR    +G RS     + +  GR  LT  +     G+ +   G+  L +G
Sbjct: 77  SPSRAGLLTGRMPFRTGIRSWIPSGKDVALGRNELTIANLLKAQGYDTAMMGKLHLNAG 135


>pdb|4HE8|L Chain L, Crystal Structure Of The Membrane Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|4HE8|F Chain F, Crystal Structure Of The Membrane Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|4HEA|L Chain L, Crystal Structure Of The Entire Respiratory Complex I From
           Thermus Thermophilus
 pdb|4HEA|T Chain T, Crystal Structure Of The Entire Respiratory Complex I From
           Thermus Thermophilus
          Length = 606

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 21  GLTSGHRGLTSGHRGLTSGRRGLTSGRKALTSGH 54
            L  G RGL SG+ GL    R L  G   L +G+
Sbjct: 552 ALFYGDRGLLSGYFGLGGAARSLGQGLARLQTGY 585



 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 69  KALTSGHRGLTSGHRSLTSGRRALTSGHKTLTSGH 103
           +AL  G RGL SG+  L    R+L  G   L +G+
Sbjct: 551 EALFYGDRGLLSGYFGLGGAARSLGQGLARLQTGY 585


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,173,072
Number of Sequences: 62578
Number of extensions: 108439
Number of successful extensions: 186
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 12
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)