Query psy16456
Match_columns 112
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 21:47:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vq8_L 50S ribosomal protein L 17.8 55 0.0019 22.9 1.7 18 4-21 10-29 (165)
2 1rv3_A Serine hydroxymethyltra 7.9 1.6E+02 0.0055 21.5 1.5 18 91-111 250-267 (483)
3 3m5u_A Phosphoserine aminotran 4.6 2.6E+02 0.0089 20.3 1.1 19 91-111 188-206 (361)
4 2a7v_A Serine hydroxymethyltra 4.5 3.2E+02 0.011 20.9 1.6 19 90-111 259-277 (490)
5 3qm2_A Phosphoserine aminotran 4.1 2.9E+02 0.01 20.2 1.0 19 91-111 216-234 (386)
6 1qgi_A Protein (chitosanase); 4.0 2.5E+02 0.0086 21.7 0.6 13 6-18 57-69 (259)
7 3e77_A Phosphoserine aminotran 3.7 3.2E+02 0.011 20.2 0.9 19 91-111 201-219 (377)
8 1chk_A Chitosanase, endochitos 3.4 2.7E+02 0.0094 21.2 0.3 12 6-17 42-53 (238)
9 3e9k_A Kynureninase; kynurenin 3.1 5.7E+02 0.019 17.8 1.7 16 91-106 270-285 (465)
10 3d24_B Peroxisome proliferator 2.9 1.7E+02 0.0059 16.1 -0.9 13 89-101 7-19 (26)
No 1
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=17.83 E-value=55 Score=22.85 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=12.1
Q ss_pred CCCCcccCCCccccc--CCC
Q psy16456 4 GHRGLTSGRRGLTSG--HRG 21 (112)
Q Consensus 4 ghrgltsgrrgltsg--hrg 21 (112)
+|||.-||+.|=|+| |+|
T Consensus 10 ~gRg~GsG~~GKt~grGhkG 29 (165)
T 1vq8_L 10 GSRTHGGGSHKNRRGAGHRG 29 (165)
T ss_dssp TCSSTTCSSTTSSCSGGGGT
T ss_pred CccCCCCCCCCCCCCCCCCC
Confidence 567777777777666 554
No 2
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=7.90 E-value=1.6e+02 Score=21.52 Aligned_cols=18 Identities=44% Similarity=0.643 Sum_probs=12.8
Q ss_pred ccccCCccccccCccceeeec
Q psy16456 91 ALTSGHKTLTSGHRGLTSFII 111 (112)
Q Consensus 91 altsghktltsghrgltsfii 111 (112)
..+|.||+| .|.|| .||+
T Consensus 250 v~~s~~K~l-~Gprg--G~i~ 267 (483)
T 1rv3_A 250 VTTTTHKTL-RGCRA--GMIF 267 (483)
T ss_dssp EEEESSGGG-CCCSC--EEEE
T ss_pred EEecCcccC-CCCCc--eEEE
Confidence 457899998 47777 5553
No 3
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=4.60 E-value=2.6e+02 Score=20.29 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=14.3
Q ss_pred ccccCCccccccCccceeeec
Q psy16456 91 ALTSGHKTLTSGHRGLTSFII 111 (112)
Q Consensus 91 altsghktltsghrgltsfii 111 (112)
...|+||.+ |-.|+.-+++
T Consensus 188 ~~~s~~K~~--gp~G~g~l~~ 206 (361)
T 3m5u_A 188 FYGGVQKNA--GISGLSCIFI 206 (361)
T ss_dssp EEEETTTTS--SCTTCEEEEE
T ss_pred EEEechhcc--CCCccEEEEE
Confidence 467999999 6778776554
No 4
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=4.55 E-value=3.2e+02 Score=20.94 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=12.9
Q ss_pred cccccCCccccccCccceeeec
Q psy16456 90 RALTSGHKTLTSGHRGLTSFII 111 (112)
Q Consensus 90 raltsghktltsghrgltsfii 111 (112)
-..+|.||+| .|.+| +||+
T Consensus 259 iv~~S~hK~l-~Gp~G--G~i~ 277 (490)
T 2a7v_A 259 IVTTTTHKTL-RGARS--GLIF 277 (490)
T ss_dssp EEEEESSGGG-CSCSC--EEEE
T ss_pred EEEECCcccC-ccccc--hhee
Confidence 3467899998 46776 5543
No 5
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=4.07 E-value=2.9e+02 Score=20.21 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.3
Q ss_pred ccccCCccccccCccceeeec
Q psy16456 91 ALTSGHKTLTSGHRGLTSFII 111 (112)
Q Consensus 91 altsghktltsghrgltsfii 111 (112)
...|+||.+ |-.|+.-+++
T Consensus 216 ~~~s~hK~l--GP~G~g~l~v 234 (386)
T 3qm2_A 216 IYAGAQKNI--GPAGLTLVIV 234 (386)
T ss_dssp EEEETTTTT--CCTTEEEEEE
T ss_pred EEEeccccc--CCCccEEEEE
Confidence 457999999 6778766654
No 6
>1qgi_A Protein (chitosanase); hydrolase, chitosan degradation; HET: GCS NAG; 1.60A {Bacillus circulans} SCOP: d.2.1.7 PDB: 2d05_A
Probab=3.98 E-value=2.5e+02 Score=21.74 Aligned_cols=13 Identities=54% Similarity=0.749 Sum_probs=5.8
Q ss_pred CCcccCCCccccc
Q psy16456 6 RGLTSGRRGLTSG 18 (112)
Q Consensus 6 rgltsgrrgltsg 18 (112)
||+|-|+-|.|+|
T Consensus 57 RGyT~Gi~GfttG 69 (259)
T 1qgi_A 57 RGYTIGLFGATTG 69 (259)
T ss_dssp SCCEETTTTEECC
T ss_pred CceeeeeeEEecC
Confidence 4444444444444
No 7
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=3.69 E-value=3.2e+02 Score=20.17 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=14.5
Q ss_pred ccccCCccccccCccceeeec
Q psy16456 91 ALTSGHKTLTSGHRGLTSFII 111 (112)
Q Consensus 91 altsghktltsghrgltsfii 111 (112)
...|+||.+ |-.|+.-+++
T Consensus 201 ~~~s~~K~~--gp~G~g~l~~ 219 (377)
T 3e77_A 201 IFAGAQKNV--GSAGVTVVIV 219 (377)
T ss_dssp EEEEGGGTT--SCTTCEEEEE
T ss_pred EEEeccccc--CCCccEEEEE
Confidence 568999999 6888775554
No 8
>1chk_A Chitosanase, endochitosanase; anti-fungal protein, hydrolase, O-glycosyl, hydrolase (O-Gly; 2.40A {Streptomyces SP} SCOP: d.2.1.7
Probab=3.40 E-value=2.7e+02 Score=21.19 Aligned_cols=12 Identities=50% Similarity=0.731 Sum_probs=4.8
Q ss_pred CCcccCCCcccc
Q psy16456 6 RGLTSGRRGLTS 17 (112)
Q Consensus 6 rgltsgrrglts 17 (112)
||.|-|+-|.|+
T Consensus 42 RGyT~Gi~Gftt 53 (238)
T 1chk_A 42 RGYTGGIIGFCS 53 (238)
T ss_dssp SCEEETTTTEET
T ss_pred Ccceeeeeeeec
Confidence 344444444333
No 9
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=3.07 E-value=5.7e+02 Score=17.78 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=10.8
Q ss_pred ccccCCccccccCccc
Q psy16456 91 ALTSGHKTLTSGHRGL 106 (112)
Q Consensus 91 altsghktltsghrgl 106 (112)
+..|+||++.+|-.++
T Consensus 270 ~~~s~~K~l~~gp~~~ 285 (465)
T 3e9k_A 270 ACWCSYKYLNAGAGGI 285 (465)
T ss_dssp EEECSSSTTCCCTTCC
T ss_pred EEECcccccccCCCce
Confidence 3468889887665543
No 10
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=2.92 E-value=1.7e+02 Score=16.09 Aligned_cols=13 Identities=38% Similarity=0.332 Sum_probs=0.0
Q ss_pred ccccccCCccccc
Q psy16456 89 RRALTSGHKTLTS 101 (112)
Q Consensus 89 rraltsghktlts 101 (112)
||.-|.=||.|||
T Consensus 7 rRpCtELlKyLTs 19 (26)
T 3d24_B 7 RRPCSELLKYLTT 19 (26)
T ss_pred CCcHHHHHHHHhc
Done!