Query psy16456
Match_columns 112
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 21:47:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16456.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16456hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkwa1 c.67.1.3 (A:3-384) Ala 14.8 35 0.0026 21.6 1.7 21 91-112 193-213 (382)
2 d1vqol1 c.12.1.1 (L:1-150) Rib 5.1 1.5E+02 0.011 17.4 1.7 10 5-14 10-19 (150)
3 d1dxsa_ a.60.1.2 (A:) C-termin 2.6 1.9E+02 0.014 15.1 0.3 7 77-83 41-47 (57)
4 d1g6oa_ c.37.1.11 (A:) Hexamer 2.6 1.4E+02 0.01 20.0 -0.2 15 69-83 254-269 (323)
5 d2cu8a2 g.39.1.3 (A:38-70) Cys 2.5 2.1E+02 0.015 15.0 0.5 7 96-102 6-12 (33)
6 d2f1fa2 d.58.18.6 (A:78-163) A 2.5 2.2E+02 0.016 16.0 0.6 13 87-99 73-85 (86)
7 d1h0ca_ c.67.1.3 (A:) Alanine- 2.3 3.9E+02 0.029 16.2 1.7 20 91-111 200-219 (388)
8 d1jf9a_ c.67.1.3 (A:) NifS-lik 2.2 3.5E+02 0.025 17.3 1.4 18 91-110 219-236 (405)
9 d1kfia1 c.84.1.1 (A:3-205) Exo 2.2 1.8E+02 0.013 19.2 -0.1 14 66-79 15-28 (203)
10 d2pc6a1 d.58.18.6 (A:78-163) A 2.2 2.6E+02 0.019 15.6 0.6 14 87-100 72-85 (86)
No 1
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.80 E-value=35 Score=21.59 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=14.8
Q ss_pred ccccCCccccccCccceeeecC
Q psy16456 91 ALTSGHKTLTSGHRGLTSFIIS 112 (112)
Q Consensus 91 altsghktltsghrgltsfiis 112 (112)
+..|+||+| .|..|+.-++++
T Consensus 193 ~~~s~~K~l-~gP~G~g~l~vs 213 (382)
T d2bkwa1 193 ALTASQKAI-GAPAGLSISLCS 213 (382)
T ss_dssp EEEESSSTT-CCCSCEEEEEEC
T ss_pred EeecccccC-cCCCchhhhhcc
Confidence 467899988 667777665553
No 2
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=5.08 E-value=1.5e+02 Score=17.43 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=4.6
Q ss_pred CCCcccCCCc
Q psy16456 5 HRGLTSGRRG 14 (112)
Q Consensus 5 hrgltsgrrg 14 (112)
.||.-+|+.+
T Consensus 10 gRg~G~G~~~ 19 (150)
T d1vqol1 10 SRTHGGGSHK 19 (150)
T ss_dssp CSSTTCSSTT
T ss_pred CcCcCCCCCC
Confidence 4444444444
No 3
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.58 E-value=1.9e+02 Score=15.07 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.2
Q ss_pred Ccccccc
Q psy16456 77 GLTSGHR 83 (112)
Q Consensus 77 gltsghr 83 (112)
|+++|||
T Consensus 41 GI~~~hr 47 (57)
T d1dxsa_ 41 KIPEQYR 47 (57)
T ss_dssp TCCTTTH
T ss_pred CCCHHHH
Confidence 3444554
No 4
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=2.58 E-value=1.4e+02 Score=19.99 Aligned_cols=15 Identities=53% Similarity=0.833 Sum_probs=10.3
Q ss_pred ccccccCCC-cccccc
Q psy16456 69 KALTSGHRG-LTSGHR 83 (112)
Q Consensus 69 kaltsghrg-ltsghr 83 (112)
+|+.+||.| +++=|-
T Consensus 254 ~a~~tGh~g~~tT~Ha 269 (323)
T d1g6oa_ 254 NVLCSGHKGTLTTLHA 269 (323)
T ss_dssp HHHHTTCSCEEEEECC
T ss_pred HHHHhcCCcEEEEECC
Confidence 566788876 666664
No 5
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.52 E-value=2.1e+02 Score=15.03 Aligned_cols=7 Identities=71% Similarity=0.904 Sum_probs=5.2
Q ss_pred Ccccccc
Q psy16456 96 HKTLTSG 102 (112)
Q Consensus 96 hktltsg 102 (112)
+|||+.|
T Consensus 6 ~ktL~~G 12 (33)
T d2cu8a2 6 SKTLTPG 12 (33)
T ss_dssp CCBCCTT
T ss_pred ccccCCC
Confidence 5788776
No 6
>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=2.50 E-value=2.2e+02 Score=15.99 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=6.8
Q ss_pred ccccccccCCccc
Q psy16456 87 SGRRALTSGHKTL 99 (112)
Q Consensus 87 sgrraltsghktl 99 (112)
||+-|++.|-|+|
T Consensus 73 SG~iai~rg~~~l 85 (86)
T d2f1fa2 73 SGVVGLSRGDKIM 85 (86)
T ss_dssp CCCEEEESTTCCC
T ss_pred CCHhhhhcccccc
Confidence 4555555555543
No 7
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.28 E-value=3.9e+02 Score=16.19 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=12.4
Q ss_pred ccccCCccccccCccceeeec
Q psy16456 91 ALTSGHKTLTSGHRGLTSFII 111 (112)
Q Consensus 91 altsghktltsghrgltsfii 111 (112)
...++||++- |..|+.-+++
T Consensus 200 ~~~s~~K~~~-gp~g~~~~~~ 219 (388)
T d1h0ca_ 200 LYSGSQKALN-APPGTSLISF 219 (388)
T ss_dssp EEEESSSTTC-CCTTCEEEEE
T ss_pred eccccccccc-CCCceEEEee
Confidence 4577888873 5566654443
No 8
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}
Probab=2.23 E-value=3.5e+02 Score=17.28 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=11.1
Q ss_pred ccccCCccccccCccceeee
Q psy16456 91 ALTSGHKTLTSGHRGLTSFI 110 (112)
Q Consensus 91 altsghktltsghrgltsfi 110 (112)
...|+||++ |..|+-.++
T Consensus 219 ~~~s~hK~~--Gp~G~g~l~ 236 (405)
T d1jf9a_ 219 YVFSGHKLY--GPTGIGILY 236 (405)
T ss_dssp EEEEGGGTT--SCSSCEEEE
T ss_pred eeccccccc--cCCCceeee
Confidence 346788884 666754443
No 9
>d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Probab=2.23 E-value=1.8e+02 Score=19.17 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=9.8
Q ss_pred cccccccccCCCcc
Q psy16456 66 SGRKALTSGHRGLT 79 (112)
Q Consensus 66 sgrkaltsghrglt 79 (112)
.+.|.=|||+||..
T Consensus 15 ~~qK~GTsG~Rg~v 28 (203)
T d1kfia1 15 AGQKPGTSGLRKKV 28 (203)
T ss_dssp TTCCCBTTBEEEEH
T ss_pred CCCCCCCCCCCccc
Confidence 45677788888753
No 10
>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=2.21 E-value=2.6e+02 Score=15.60 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=0.0
Q ss_pred ccccccccCCcccc
Q psy16456 87 SGRRALTSGHKTLT 100 (112)
Q Consensus 87 sgrraltsghktlt 100 (112)
||+-|++.|-|+|.
T Consensus 72 SG~vai~rg~~~l~ 85 (86)
T d2pc6a1 72 TGVSGLSRGERVLK 85 (86)
T ss_dssp CCCEEEESTTCCTT
T ss_pred cCHhhhhcCccccc
Done!