RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16456
         (112 letters)



>gnl|CDD|221509 pfam12287, Caprin-1_C, Cytoplasmic
           activation/proliferation-associated protein-1 C term.
           This family of proteins is found in eukaryotes. Proteins
           in this family are typically between 343 and 708 amino
           acids in length. This family is the C terminal region of
           caprin-1. Caprin-1 is a protein involved in regulating
           cellular proliferation. In mutated phenotypes, the G1
           phase of the cell cycle is greatly lengthened, impairing
           normal proliferation. The C terminal region of caprin-1
           contains RGG motifs which are characteristic of RNA
           binding domains. It is possible that caprin-1 functions
           through an RNA binding mechanism.
          Length = 319

 Score = 28.0 bits (62), Expect = 0.99
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 6   RGLTSGRRGLTSGHRGLTSGHRGLTSGHR 34
           RG     RG+ +G+RG ++G RG   G+R
Sbjct: 246 RGGPRNPRGMINGYRGPSNGFRGGYDGYR 274



 Score = 26.9 bits (59), Expect = 2.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 13  RGLTSGHRGLTSGHRGLTSGHRGLTSGRR 41
           RG     RG+ +G+RG ++G RG   G R
Sbjct: 246 RGGPRNPRGMINGYRGPSNGFRGGYDGYR 274



 Score = 24.9 bits (54), Expect = 10.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 20  RGLTSGHRGLTSGHRGLTSGRRGLTSGRKA 49
           RG     RG+ +G+RG ++G RG   G + 
Sbjct: 246 RGGPRNPRGMINGYRGPSNGFRGGYDGYRP 275


>gnl|CDD|236084 PRK07739, flgK, flagellar hook-associated protein FlgK;
          Validated.
          Length = 507

 Score = 26.1 bits (58), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 35 GLTSGRRGLTSGRKAL-TSGH 54
          GL + RRGL + + AL  +GH
Sbjct: 7  GLETARRGLFAQQAALYVTGH 27


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,342,616
Number of extensions: 448660
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 10
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)