RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16456
         (112 letters)



>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
            mRNA, multiprotein complex; HET: UTP; 2.30A
            {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
            1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
            1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
            1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
          Length = 1733

 Score = 33.9 bits (77), Expect = 0.007
 Identities = 32/100 (32%), Positives = 36/100 (36%)

Query: 9    TSGRRGLTSGHRGLTSGHRGLTSGHRGLTSGRRGLTSGRKALTSGHRSLTSGRRGLTSGR 68
            TS     TS     TS     TS     TS     TS   + TS   S TS     TS  
Sbjct: 1552 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1611

Query: 69   KALTSGHRGLTSGHRSLTSGRRALTSGHKTLTSGHRGLTS 108
             + TS     TS   S TS   + TS   + TS     TS
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1651



 Score = 32.8 bits (74), Expect = 0.016
 Identities = 33/104 (31%), Positives = 37/104 (35%)

Query: 9    TSGRRGLTSGHRGLTSGHRGLTSGHRGLTSGRRGLTSGRKALTSGHRSLTSGRRGLTSGR 68
            TS     TS     TS     TS     TS     TS   + TS   S TS     TS  
Sbjct: 1545 TSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1604

Query: 69   KALTSGHRGLTSGHRSLTSGRRALTSGHKTLTSGHRGLTSFIIS 112
             + TS     TS   S TS   + TS   + TS     TS   S
Sbjct: 1605 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1648



 Score = 32.0 bits (72), Expect = 0.032
 Identities = 32/100 (32%), Positives = 36/100 (36%)

Query: 9    TSGRRGLTSGHRGLTSGHRGLTSGHRGLTSGRRGLTSGRKALTSGHRSLTSGRRGLTSGR 68
            TS     TS     TS     TS     TS     TS   + TS   S TS     TS  
Sbjct: 1559 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1618

Query: 69   KALTSGHRGLTSGHRSLTSGRRALTSGHKTLTSGHRGLTS 108
             + TS     TS   S TS   + TS   + TS     TS
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1658



 Score = 30.4 bits (68), Expect = 0.11
 Identities = 32/100 (32%), Positives = 38/100 (38%)

Query: 9    TSGRRGLTSGHRGLTSGHRGLTSGHRGLTSGRRGLTSGRKALTSGHRSLTSGRRGLTSGR 68
            TS   G++S     TS     TS     TS     TS   + TS   S TS     TS  
Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1590

Query: 69   KALTSGHRGLTSGHRSLTSGRRALTSGHKTLTSGHRGLTS 108
             + TS     TS   S TS   + TS   + TS     TS
Sbjct: 1591 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1630



 Score = 28.5 bits (63), Expect = 0.41
 Identities = 30/95 (31%), Positives = 36/95 (37%)

Query: 7    GLTSGRRGLTSGHRGLTSGHRGLTSGHRGLTSGRRGLTSGRKALTSGHRSLTSGRRGLTS 66
            G++S     TS     TS     TS     TS     TS   + TS   S TS     TS
Sbjct: 1536 GVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1595

Query: 67   GRKALTSGHRGLTSGHRSLTSGRRALTSGHKTLTS 101
               + TS     TS   S TS   + TS   + TS
Sbjct: 1596 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1630



 Score = 27.8 bits (61), Expect = 0.86
 Identities = 27/83 (32%), Positives = 33/83 (39%)

Query: 30   TSGHRGLTSGRRGLTSGRKALTSGHRSLTSGRRGLTSGRKALTSGHRGLTSGHRSLTSGR 89
            TS   G++S     TS   + TS   S TS     TS   + TS     TS   S TS  
Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1590

Query: 90   RALTSGHKTLTSGHRGLTSFIIS 112
             + TS   + TS     TS   S
Sbjct: 1591 YSPTSPSYSPTSPSYSPTSPSYS 1613


>3ult_A ICE recrystallization inhibition protein-like Pro; beta-solenoid,
           beta-roll, ICE-binding, antifreeze, extracellular,
           antifreeze protein; HET: EDO; 1.40A {Lolium perenne}
          Length = 133

 Score = 32.7 bits (74), Expect = 0.010
 Identities = 19/103 (18%), Positives = 35/103 (33%)

Query: 1   MATGHRGLTSGRRGLTSGHRGLTSGHRGLTSGHRGLTSGRRGLTSGRKALTSGHRSLTSG 60
           ++  +  ++     + SG+    +G   + SG   + +      SG     SG     SG
Sbjct: 31  ISGDNNSVSGSNNTVVSGNDNTVTGSNHVVSGTNHIVTDNNNNVSGNDNNVSGSFHTVSG 90

Query: 61  RRGLTSGRKALTSGHRGLTSGHRSLTSGRRALTSGHKTLTSGH 103
                SG     SG   + SG   + +    L +  +     H
Sbjct: 91  GHNTVSGSNNTVSGSNHVVSGSNKVVTDAAKLAAALEHHHHHH 133



 Score = 32.4 bits (73), Expect = 0.013
 Identities = 18/94 (19%), Positives = 37/94 (39%)

Query: 15  LTSGHRGLTSGHRGLTSGHRGLTSGRRGLTSGRKALTSGHRSLTSGRRGLTSGRKALTSG 74
           ++  +  ++  +  + SG+    +G   + SG   + + + +  SG     SG     SG
Sbjct: 31  ISGDNNSVSGSNNTVVSGNDNTVTGSNHVVSGTNHIVTDNNNNVSGNDNNVSGSFHTVSG 90

Query: 75  HRGLTSGHRSLTSGRRALTSGHKTLTSGHRGLTS 108
                SG  +  SG   + SG   + +    L +
Sbjct: 91  GHNTVSGSNNTVSGSNHVVSGSNKVVTDAAKLAA 124


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 2.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 36  LTSGRRGLTSGRKALTSGHRSLTSGRRGLT 65
           LT+  + +T    A T+ H SL      LT
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLT 299


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,616,713
Number of extensions: 88984
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 13
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)