BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16459
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3
          Length = 351

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 52/56 (92%)

Query: 85  QQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           +QL S  GIP+VYYFGPCGKYNA+V+ELLGPSLEDLFDLC+R F+LKTVLMIAIQL
Sbjct: 80  KQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQL 135



 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 9/60 (15%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLQS 89
           G P+VY+FG           G Y A+VL LLGPSL+DLF+LC   FSLKTVLMIA QL S
Sbjct: 87  GIPQVYYFGPC---------GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLIS 137


>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
           Inhibitor
 pdb|2IZS|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
           Inhibitor
 pdb|2IZT|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
           Inhibitor
 pdb|2IZU|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
           Inhibitor
          Length = 330

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 52/56 (92%)

Query: 85  QQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           +QL S  GIP+VYYFGPCGKYNA+V+ELLGPSLEDLFDLC+R F+LKTVLMIAIQL
Sbjct: 59  KQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQL 114



 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 40/61 (65%), Gaps = 9/61 (14%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLQS 89
           G P+VY+FG           G Y A+VL LLGPSL+DLF+LC   FSLKTVLMIA QL S
Sbjct: 66  GIPQVYYFGPC---------GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLIS 116

Query: 90  N 90
            
Sbjct: 117 R 117


>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1
 pdb|4HGS|A Chain A, Crystal Structure Of Ck1gs With Compound 13
          Length = 330

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 52/56 (92%)

Query: 85  QQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           +QL S  GIP+VYYFGPCGKYNA+V+ELLGPSLEDLFDLC+R F+LKTVLMIAIQL
Sbjct: 59  KQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQL 114



 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 9/60 (15%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLQS 89
           G P+VY+FG           G Y A+VL LLGPSL+DLF+LC   FSLKTVLMIA QL S
Sbjct: 66  GIPQVYYFGPC---------GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLIS 116


>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2
 pdb|2C47|B Chain B, Structure Of Casein Kinase 1 Gamma 2
 pdb|2C47|C Chain C, Structure Of Casein Kinase 1 Gamma 2
 pdb|2C47|D Chain D, Structure Of Casein Kinase 1 Gamma 2
          Length = 313

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 52/56 (92%)

Query: 85  QQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           +QL + +G+P+VYYFGP GKYNA+V+ELLGPSLEDLFDLC+R FTLKTVLMIAIQL
Sbjct: 54  KQLSATEGVPQVYYFGPXGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQL 109



 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 9/58 (15%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
           G P+VY+FG           G Y A+VL LLGPSL+DLF+LC   F+LKTVLMIA QL
Sbjct: 61  GVPQVYYFG---------PXGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQL 109


>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With
           2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9-
           Isopropylpurine (Casp Target)
          Length = 310

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 49/52 (94%)

Query: 89  SNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           + +G+P+VYYFGP GKYNA+V+ELLGPSLEDLFDLC+R FTLKTVLMIAIQL
Sbjct: 55  AGEGLPQVYYFGPXGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQL 106



 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 9/61 (14%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLQS 89
           G P+VY+FG           G Y A+VL LLGPSL+DLF+LC   F+LKTVLMIA QL S
Sbjct: 58  GLPQVYYFGPX---------GKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQLLS 108

Query: 90  N 90
            
Sbjct: 109 R 109


>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
          Length = 483

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query: 83  IAQQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           I + LQ   GIP V +FG  G YN LVM+LLGPSLEDLF+ C+RK +LKTVLM+A Q+
Sbjct: 55  IYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQM 112



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 9/58 (15%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
           G P V +FG           G Y  LV+ LLGPSL+DLF  C  + SLKTVLM+A Q+
Sbjct: 64  GIPNVRWFG---------VEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQM 112


>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
 pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
           Form
 pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
           Form
 pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
 pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
 pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
 pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
          Length = 296

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 83  IAQQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           I + +Q   GIP + + G  G YN +VMELLGPSLEDLF+ C+RKF+LKTVL++A Q+
Sbjct: 57  IYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 114



 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 50  GGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLQS 89
           G Y  +V+ LLGPSL+DLF  C  +FSLKTVL++A Q+ S
Sbjct: 77  GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMIS 116


>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
           Residues 1-317 Complex With Bound Tungstate
 pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
           Residues 1-317 Complex With Bound Tungstate
 pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
           Containing Residues 1-317
 pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
           Containing Residues 1-317
          Length = 317

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 83  IAQQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           I + +Q   GIP + + G  G YN +VMELLGPSLEDLF+ C+RKF+LKTVL++A Q+
Sbjct: 55  IYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 112



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 50  GGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLQS 89
           G Y  +V+ LLGPSL+DLF  C  +FSLKTVL++A Q+ S
Sbjct: 75  GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMIS 114


>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
           Atp Competitive Inhibitor, Ic261
 pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
           Atp Competitive Inhibitor, Ic261
 pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
          Length = 298

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 39/49 (79%)

Query: 92  GIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           GIP VYYFG  G +N LV++LLGPSLEDL DLC RKF++KTV M A Q+
Sbjct: 67  GIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQM 115



 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 9/58 (15%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
           G P VY+FG+          G +  LV+ LLGPSL+DL +LCG +FS+KTV M A+Q+
Sbjct: 67  GIPNVYYFGQ---------EGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQM 115


>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
          Length = 297

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 39/49 (79%)

Query: 92  GIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           GIP VYYFG  G +N LV++LLGPSLEDL DLC RKF++KTV M A Q+
Sbjct: 66  GIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQM 114



 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 9/58 (15%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
           G P VY+FG+          G +  LV+ LLGPSL+DL +LCG +FS+KTV M A+Q+
Sbjct: 66  GIPNVYYFGQ---------EGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQM 114


>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
 pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
 pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
 pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
 pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
 pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
 pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
 pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
 pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
 pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
 pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
 pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
 pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
 pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
          Length = 296

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 85  QQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
           + +Q   GIP + + G  G YN +VMELLGPSLEDLF+ C+RKF+LKTVL++A Q+
Sbjct: 59  KMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 114



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 50  GGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQLQS 89
           G Y  +V+ LLGPSL+DLF  C  +FSLKTVL++A Q+ S
Sbjct: 77  GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMIS 116


>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
          Length = 361

 Score = 33.1 bits (74), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIA 84
           G P+ Y+   + DK    +G  Y+ +++   G  LQ ++E    RFS KTVL ++
Sbjct: 109 GVPK-YWGSGLHDK----NGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS 158


>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
 pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
           1(Vrk1)
          Length = 368

 Score = 33.1 bits (74), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIA 84
           G P+ Y+   + DK    +G  Y+ +++   G  LQ ++E    RFS KTVL ++
Sbjct: 109 GVPK-YWGSGLHDK----NGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS 158


>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
 pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
 pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
 pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
          Length = 364

 Score = 32.7 bits (73), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 30  GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
           G P+ Y+   + DK    +G  Y+ +++   G  LQ ++E    RFS KTVL ++ ++
Sbjct: 109 GVPK-YWGSGLHDK----NGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRI 161


>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
           Fluor-de-lys Peptide And Piceatannol
          Length = 284

 Score = 27.7 bits (60), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 63  SLQDLFELCGFRFSLKTVLMIAQQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFD 122
           SLQD+ EL   R   + V+M+   + +  GIP+    G  G Y+ L    L P  E +F+
Sbjct: 9   SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPG-SGLYSNLQQYDL-PYPEAIFE 66

Query: 123 L 123
           L
Sbjct: 67  L 67


>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
           Peptide
 pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
 pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
 pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
 pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
 pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
 pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
 pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
           Acecs2 Peptide Containing A Thioacetyl Lysine
 pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
          Length = 285

 Score = 27.3 bits (59), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 63  SLQDLFELCGFRFSLKTVLMIAQQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFD 122
           SLQD+ EL   R   + V+M+   + +  GIP+    G  G Y+ L    L P  E +F+
Sbjct: 10  SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPG-SGLYSNLQQYDL-PYPEAIFE 67

Query: 123 L 123
           L
Sbjct: 68  L 68


>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
          Length = 274

 Score = 27.3 bits (59), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 63  SLQDLFELCGFRFSLKTVLMIAQQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFD 122
           SLQD+ EL   R   + V+M+   + +  GIP+    G  G Y+ L    L P  E +F+
Sbjct: 3   SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPG-SGLYSNLQQYDL-PYPEAIFE 60

Query: 123 L 123
           L
Sbjct: 61  L 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.142    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,173,574
Number of Sequences: 62578
Number of extensions: 158038
Number of successful extensions: 255
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 28
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)