RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16459
(143 letters)
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 108 bits (271), Expect = 2e-29
Identities = 46/58 (79%), Positives = 52/58 (89%)
Query: 83 IAQQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
+QL S GIP+VYYFGPCGKYNA+V+ELLGPSLEDLFDLC+R F+LKTVLMIAIQL
Sbjct: 57 FYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQL 114
Score = 79.0 bits (195), Expect = 1e-18
Identities = 34/59 (57%), Positives = 39/59 (66%), Gaps = 9/59 (15%)
Query: 29 HGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
G P+VY+FG G Y A+VL LLGPSL+DLF+LC FSLKTVLMIA QL
Sbjct: 65 DGIPQVYYFGPC---------GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQL 114
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 109 bits (274), Expect = 3e-29
Identities = 35/56 (62%), Positives = 43/56 (76%)
Query: 85 QQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
+ LQ GIP V +FG G YN LVM+LLGPSLEDLF+ C+RK +LKTVLM+A Q+
Sbjct: 57 RILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQM 112
Score = 77.0 bits (189), Expect = 1e-17
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 29 HGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
G P V +FG G Y LV+ LLGPSL+DLF C + SLKTVLM+A Q+
Sbjct: 63 TGIPNVRWFGVE---------GDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQM 112
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 106 bits (266), Expect = 6e-29
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 85 QQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
+ +Q GIP + + G G YN +VMELLGPSLEDLF+ C+RKF+LKTVL++A Q+
Sbjct: 59 KMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 114
Score = 75.5 bits (186), Expect = 2e-17
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 29 HGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
G P + + G G Y +V+ LLGPSL+DLF C +FSLKTVL++A Q+
Sbjct: 65 VGIPTIRWCGAE---------GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 114
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 103 bits (260), Expect = 4e-28
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 85 QQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
+ L GIP VYYFG G +N LV++LLGPSLEDL DLC RKF++KTV M A Q+
Sbjct: 60 KLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQM 115
Score = 76.6 bits (189), Expect = 6e-18
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 9/59 (15%)
Query: 29 HGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
G P VY+FG+ G + LV+ LLGPSL+DL +LCG +FS+KTV M A+Q+
Sbjct: 66 TGIPNVYYFGQE---------GLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQM 115
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 95.2 bits (237), Expect = 2e-24
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 92 GIPEVYYFGPCG----KYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
G+P+ + G Y ++M+ G L+ +++ ++F+ KTVL +++++
Sbjct: 109 GVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRI 161
Score = 77.1 bits (190), Expect = 1e-17
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 30 GFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFRFSLKTVLMIAQQL 87
G P+ + G +G Y+ +++ G LQ ++E RFS KTVL ++ ++
Sbjct: 109 GVPKYWGSG-----LHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRI 161
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 91.3 bits (227), Expect = 4e-23
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 92 GIPEVYYFG-PCGKYNALVMELLGPSLEDLFDLCNRK-FTLKTVLMIAIQL 140
IP FG KY LV+ LG SL+ D+ + + ++VL +A +L
Sbjct: 118 AIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRL 168
Score = 71.7 bits (176), Expect = 8e-16
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 27 PPHGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQ 85
P P FG Y+ LVL LG SLQ ++ S ++VL +A
Sbjct: 115 PLLAIPTCMGFGV--------HQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVAC 166
Query: 86 QL 87
+L
Sbjct: 167 RL 168
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 89.0 bits (221), Expect = 3e-22
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 82 MIAQQLQSNKGIPEVYYFG----PCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLMIA 137
I ++ GIP Y G Y +VME LG L+ + N F TVL +
Sbjct: 99 WIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISG-QNGTFKKSTVLQLG 157
Query: 138 IQL 140
I++
Sbjct: 158 IRM 160
Score = 74.4 bits (183), Expect = 8e-17
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 14 KCQFSLEGMEDDPPPHGFPRVYFFGKVMDKTDKPSGGGYQALVLSLLGPSLQDLFELCGF 73
K G P Y G K G Y+ +V+ LG LQ + G
Sbjct: 93 KDCIKKWIERKQLDYLGIPLFYGSGLTEFK-----GRSYRFMVMERLGIDLQKISGQNG- 146
Query: 74 RFSLKTVLMIAQQL 87
F TVL + ++
Sbjct: 147 TFKKSTVLQLGIRM 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 2e-04
Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 38/136 (27%)
Query: 17 FSLEGMEDDPPPHGFPRVYFFGK----------VMDKTDKPSGGGYQALVLSLLGPSLQD 66
FS+ + + P + ++F G+ M G + +
Sbjct: 1659 FSILDIVINNPVN--LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 67 L-FELCGFRFSL-KT-------VLM---IAQQLQSNKGIPEVYYF-G-PCGKYNAL---- 108
F + L T LM + L+S IP F G G+Y AL
Sbjct: 1717 YTFR--SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 109 -VMELLGPSLEDLFDL 123
VM S+E L ++
Sbjct: 1775 DVM-----SIESLVEV 1785
Score = 30.0 bits (67), Expect = 0.25
Identities = 28/165 (16%), Positives = 45/165 (27%), Gaps = 55/165 (33%)
Query: 2 ERTSTLTSMSLLKCQFSLEGMEDDPPPHGFP------------RVY-FFGKVMDKTDKPS 48
T+ + + L+K + M P ++ FG
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG---------- 161
Query: 49 GGG---------------YQALVLSLLGPSLQDLFELC----GFRFSLKTVLMIAQQLQS 89
G G Y LV L+ S + L EL L I + L++
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 90 NKGIPEVYYF------GP------CGKYNALVMELLGPSLEDLFD 122
P+ Y P Y + +LLG + +L
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHY-VVTAKLLGFTPGELRS 265
Score = 29.2 bits (65), Expect = 0.47
Identities = 32/196 (16%), Positives = 48/196 (24%), Gaps = 89/196 (45%)
Query: 3 RTSTLTSMSL------LKCQF--SLE------GMEDDP--PPHGFPRVYFFGKVMDKTDK 46
L + L+ QF L +D+P P + F G V +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--FLGYVSSLVEP 74
Query: 47 PSGGGYQALVLSLLGPSLQDLFE---LCGFRFSLKTVLMIAQQLQSNKGIPEV------- 96
G + ++ L FE L G + +A +L V
Sbjct: 75 SKVGQFDQVLNLCL-----TEFENCYLEG-----NDIHALAAKLLQENDTTLVKTKELIK 124
Query: 97 -YY--------------------------------FGPCG----------------KYNA 107
Y FG G Y+
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEELRDLYQTYHV 182
Query: 108 LVMELLGPSLEDLFDL 123
LV +L+ S E L +L
Sbjct: 183 LVGDLIKFSAETLSEL 198
Score = 27.7 bits (61), Expect = 1.5
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 62 PSLQDLFELCGFRFSLKTVLMIAQQLQSNKGIPEVYYFGPCGK-----YNALVMELLG-- 114
+ QD++ F I + +N +++ G GK Y+A++ E +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 115 -PSLEDLFDLCNRKFT 129
E +F N T
Sbjct: 1700 KLKTEKIFKEINEHST 1715
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 34.7 bits (80), Expect = 0.005
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 97 YYFGPCGKYNALVMELLGPSLEDLFDLCN-RKFTLKTVLMIAIQL 140
+ GP G + +V E+LG +L L R L V I+ QL
Sbjct: 96 NHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQL 140
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 34.5 bits (79), Expect = 0.007
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 100 GPCGKYNALVMELLGPSLEDLFDLCN-RKFTLKTVLMIAIQL 140
G G + +V E+LG L N + L V I Q+
Sbjct: 114 GVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQV 155
Score = 26.4 bits (58), Expect = 3.8
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 49 GGGYQALVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQL 87
G + +V +LG L ++ L V I QQ+
Sbjct: 116 NGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQV 155
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 31.1 bits (71), Expect = 0.099
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 55 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQL 87
L+ LGPSL ++ + F ++ + + ++
Sbjct: 113 LIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEI 146
Score = 30.4 bits (69), Expect = 0.17
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 108 LVMELLGPSLEDLFDLCNRK-FTLKTVLMIAIQL 140
L+ E LGPSL ++ N F ++ + + I++
Sbjct: 113 LIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEI 146
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 31.1 bits (71), Expect = 0.10
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 55 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQL 87
+V LLG S D + GF F L + +A Q+
Sbjct: 94 IVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQI 127
Score = 30.3 bits (69), Expect = 0.20
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 108 LVMELLGPSLEDLFDLCNRK-FTLKTVLMIAIQL 140
+V ELLG S D F L + +A Q+
Sbjct: 94 IVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQI 127
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 30.8 bits (70), Expect = 0.11
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 55 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQL 87
+ LLG + + + F+ + L V +A QL
Sbjct: 99 IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQL 132
Score = 30.4 bits (69), Expect = 0.19
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 108 LVMELLGPSLEDLFDLCNRK-FTLKTVLMIAIQL 140
+ ELLG + + N + + L V +A QL
Sbjct: 99 IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQL 132
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 28.5 bits (64), Expect = 0.66
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 55 LVLSLLGPSLQDLFELCGFR-FSLKTVLMIAQQL 87
+ LL +L +L + F+ FSL V A +
Sbjct: 176 MTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSI 209
Score = 28.2 bits (63), Expect = 0.93
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 108 LVMELLGPSLEDLFDLCNRKF---TLKTVLMIAIQL 140
+ ELL +L +L + KF +L V A +
Sbjct: 176 MTFELLSMNLYEL--IKKNKFQGFSLPLVRKFAHSI 209
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 28.5 bits (64), Expect = 0.82
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 108 LVMELLGPSLEDLFDLCNRK-FTLKTVLMIAIQL 140
LV E+L +L DL N + +L A Q+
Sbjct: 133 LVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQM 166
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 27.0 bits (60), Expect = 2.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 92 GIPEVYYFGPCGKYNALVMELL-GPSLEDLFD 122
G+ V +V E + G SL+++ D
Sbjct: 92 GVARVLDVVHTRAGGLVVAEWIRGGSLQEVAD 123
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 25.7 bits (57), Expect = 5.9
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 108 LVMELLGPSLEDLFDLCNRKFTLKTVLMIAIQL 140
L EL GPSL+ + V
Sbjct: 134 LQTELCGPSLQQHCEAWGASLPEAQVWGYLRDT 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 7.5
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 11/38 (28%)
Query: 36 FFGKV--MDKTDKPSGGGYQA-----LVLSLLGPSLQD 66
K D P + LS++ S++D
Sbjct: 306 LLLKYLDCRPQDLPR----EVLTTNPRRLSIIAESIRD 339
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 9.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 11 SLLKCQFSLEGMEDDPPP 28
+L K Q SL+ DD P
Sbjct: 21 ALKKLQASLKLYADDSAP 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.424
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,128,875
Number of extensions: 115496
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 39
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)