RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16459
         (143 letters)



>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 293

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query: 76  SLKTVLMIAQQLQSNKGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCNRKFTLKTVLM 135
            L+      + L    GIP VYYFG  G +N LV++LLGPSLEDL DLC RKF++KTV M
Sbjct: 46  QLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAM 105

Query: 136 IAIQL 140
            A Q+
Sbjct: 106 AAKQM 110


>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional
           repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 24.4 bits (53), Expect = 2.9
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 89  SNKGIPEVYYFGPCGK 104
           +  G  + YY  P G 
Sbjct: 26  ATCGRSDTYYQSPTGD 41


>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 89  SNKGIPEVYYFGPCGK 104
            + G  +VY   P GK
Sbjct: 39  RSAGKYDVYLINPQGK 54


>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia
           coli [TaxId: 562]}
          Length = 86

 Score = 23.6 bits (51), Expect = 5.9
 Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 91  KGIPEVYY-FGPCGKYNALVMELLGPSLEDLFDLCNRKFT 129
           + + EV   +   G Y+ + ++++  S++ L  +   K  
Sbjct: 24  ESLDEVTEAYYTTGHYS-IFIKVMCRSIDALQHVLINKIQ 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 517,254
Number of extensions: 22215
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 5
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)