BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16462
(1522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 624 bits (1608), Expect = e-178, Method: Compositional matrix adjust.
Identities = 354/868 (40%), Positives = 504/868 (58%), Gaps = 37/868 (4%)
Query: 11 RCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETS---DEIDDAPLSRITCF 67
+C C + LDDP L +Q HP +A + LT L ++D TS D +D+P+ R T F
Sbjct: 68 KCPECGQHLDDPNLK-YQQHPEDAVDEPQMLTSEKLSIYDSTSTWFDTYEDSPMHRFTSF 126
Query: 68 SVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYD 127
SVY GHLCP DTGL+EKNV L FSG K I E+P+ EGGI K +GPIN W ++G+D
Sbjct: 127 SVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENPSMEGGINGKNLGPINQWWLSGFD 186
Query: 128 GGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNT 187
GGE+ I +T F+E +LMEPS+EY P + EKIY+ K+V+E + + +A +EDL+N
Sbjct: 187 GGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVEFLQNNPDAVYEDLINK 246
Query: 188 LQTATLPASVGV--LSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAG 245
++T P+++ V +ED LLRHAQF+ QV +D+A + DET + ++PC+R LI LAG
Sbjct: 247 IETTVPPSTINVNRFTEDSLLRHAQFVVSQVESYDEAKD-DDETPIFLSPCMRALIHLAG 305
Query: 246 VTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLN-----EKHEGP 300
V+ GQR+ + R + + +KATTT LV +F+ FF Q+ +K
Sbjct: 306 VSLGQRR----ATRRVMGATKEKDKAPTKATTTKLVYQIFDTFFSEQIEKYDKEDKENAM 361
Query: 301 RKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDG 360
+++RCGVCE CQQP+CG C AC DMVKFGGTG++KQAC+KRRCPN AV++A+D
Sbjct: 362 KRRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCPNLAVKEADDD------ 415
Query: 361 DEVEEKVVKATTKPSWKIKVTG--SGKKQIEWQGEGEEMD-SKLYYKSALIGGEEVKVGD 417
E + V P + K +I W G+ +++ ++ YY+ I E ++VGD
Sbjct: 416 -EEADDDVSEMPSPKKLHQGKKKKQNKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGD 474
Query: 418 YVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEA 477
V V DD + P + +V ++ED KN + H WF G +TVL SDP ELFL+
Sbjct: 475 CVSVIPDDSSKPLYLARVTALWED-KNGQM-MFHAHWFCAGTDTVLGATSDPLELFLVGE 532
Query: 478 CDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCD 537
C+++ L+ + + +V + SENWAM+GG T ED ++++++ Y+ +ARF
Sbjct: 533 CENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFES 592
Query: 538 VP-NEMFSSGIDKYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSC 596
P + K+C SC + E P + E+ Y + ++ G Y+L
Sbjct: 593 PPKTQPTEDNKHKFCLSCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDS 652
Query: 597 VYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVA 656
VY+ P+ F F K S V+ K+ +E LYPE YRK SDY+KGSN P P+ IG I
Sbjct: 653 VYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 712
Query: 657 IFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGK 716
I K K V+ +D+ L + KFYRPENTHRS +Y D+N LYWSDEE V+ SDVQG+
Sbjct: 713 IHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGR 772
Query: 717 CFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEA----LFLXXXXXXXXX 772
C V ++L S +S GP RFYF EAYNSKT+ F + P A
Sbjct: 773 CTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPNHARSPGNKGKGKGKGKGK 832
Query: 773 XXNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSXXXX 832
+Q ++P+E + + P LR L+VF+G GGLS G ++G++ + WAIE
Sbjct: 833 GKHQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQ 888
Query: 833 XFKMNNPGCTVFVDDCNKILQRVIDNEV 860
F++NNPG TVF +DCN +L+ V+ EV
Sbjct: 889 AFRLNNPGTTVFTEDCNVLLKLVMAGEV 916
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 253/362 (69%), Positives = 295/362 (81%), Gaps = 3/362 (0%)
Query: 1064 TRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1123
+R S FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+T+RCL ++GYQCTF
Sbjct: 950 SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTF 1009
Query: 1124 GTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKW 1183
G LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR QL+V + K +VS
Sbjct: 1010 GVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITR 1069
Query: 1184 TQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICK 1243
S P+RTITVRD MSDLPEIQNG E+PY LS FQR++R +P I+ DHICK
Sbjct: 1070 LSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHYQP-ILRDHICK 1128
Query: 1244 DMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGV 1303
DM+PLV AR++HIP GSDWRDLPNI+VRL DG KLQYT +D+KNG SSTGALRGV
Sbjct: 1129 DMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGV 1188
Query: 1304 CSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMG 1363
CSCA CDP +RQF TLIPWCLPHTGNRHN+W GLYGRL+W+GFFSTT+TNPEPMG
Sbjct: 1189 CSCAEGKA--CDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMG 1246
Query: 1364 KQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKR 1423
KQGRVLHPEQHRVVSVRECARSQGFPD ++F G IL++HRQVGNAVPPP+ +A+G EIK
Sbjct: 1247 KQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKL 1306
Query: 1424 AL 1425
L
Sbjct: 1307 CL 1308
Score = 254 bits (650), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 4/187 (2%)
Query: 866 NQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAF 925
+Q ++P+E + + P LR L+VF+G GGLS G ++G++ + WAIE AA AF
Sbjct: 835 HQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAF 890
Query: 926 KMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQ 985
++NNPG TVF +DCN +L+ V+ EV + Q+LP+KG+VEMLCGGPPCQGFSGMNRFN
Sbjct: 891 RLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNS 950
Query: 986 RQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFG 1045
R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+T+RCL ++GYQCTFG
Sbjct: 951 RTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFG 1010
Query: 1046 TLQAGHF 1052
LQAG +
Sbjct: 1011 VLQAGQY 1017
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To Hemimethylated
Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To Hemimethylated
Cpg Dna
Length = 873
Score = 546 bits (1407), Expect = e-155, Method: Compositional matrix adjust.
Identities = 253/362 (69%), Positives = 295/362 (81%), Gaps = 3/362 (0%)
Query: 1064 TRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1123
+R S FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+T+RCL ++GYQCTF
Sbjct: 511 SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTF 570
Query: 1124 GTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKW 1183
G LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR QL+V + K +VS
Sbjct: 571 GVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITR 630
Query: 1184 TQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICK 1243
S P+RTITVRD MSDLPEIQNG E+PY LS FQR++R +P I+ DHICK
Sbjct: 631 LSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHYQP-ILRDHICK 689
Query: 1244 DMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGV 1303
DM+PLV AR++HIP GSDWRDLPNI+VRL DG KLQYT +D+KNG SSTGALRGV
Sbjct: 690 DMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGV 749
Query: 1304 CSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMG 1363
CSCA CDP +RQF TLIPWCLPHTGNRHN+W GLYGRL+W+GFFSTT+TNPEPMG
Sbjct: 750 CSCAEGKA--CDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMG 807
Query: 1364 KQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKR 1423
KQGRVLHPEQHRVVSVRECARSQGFPD ++F G IL++HRQVGNAVPPP+ +A+G EIK
Sbjct: 808 KQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKL 867
Query: 1424 AL 1425
L
Sbjct: 868 CL 869
Score = 310 bits (794), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/482 (37%), Positives = 266/482 (55%), Gaps = 12/482 (2%)
Query: 385 KKQIEWQGEGEEMD-SKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMK 443
K +I W G+ +++ ++ YY+ I E ++VGD V V DD + P + +V ++ED K
Sbjct: 2 KDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWED-K 60
Query: 444 NFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAM 503
N + H WF G +TVL SDP ELFL+ C+++ L+ + + +V + SENWAM
Sbjct: 61 NGQM-MFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAM 119
Query: 504 QGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVP-NEMFSSGIDKYCFSCDKAEEEEA 562
+GG T ED ++++++ Y+ +ARF P + K+C SC + E
Sbjct: 120 EGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESPPKTQPTEDNKHKFCLSCIRLAELRQ 179
Query: 563 LSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVE 622
P + E+ Y + ++ G Y+L VY+ P+ F F K S V+ K+
Sbjct: 180 KEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPV 239
Query: 623 DEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPE 682
+E LYPE YRK SDY+KGSN P P+ IG I I K K V+ +D+ L + KFYRPE
Sbjct: 240 NETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPE 299
Query: 683 NTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYF 742
NTHRS +Y D+N LYWSDEE V+ SDVQG+C V ++L S +S GP RFYF
Sbjct: 300 NTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYF 359
Query: 743 NEAYNSKTEEFTNLPTEA----LFLXXXXXXXXXXXNQTNKPEEKDEITEWPSIARPLRC 798
EAYNSKT+ F + P A +Q ++P+E + + P LR
Sbjct: 360 LEAYNSKTKNFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLPK----LRT 415
Query: 799 LEVFAGAGGLSRGLDKSGVARSTWAIEFDSXXXXXFKMNNPGCTVFVDDCNKILQRVIDN 858
L+VF+G GGLS G ++G++ + WAIE F++NNPG TVF +DCN +L+ V+
Sbjct: 416 LDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAG 475
Query: 859 EV 860
EV
Sbjct: 476 EV 477
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 4/187 (2%)
Query: 866 NQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAF 925
+Q ++P+E + + P LR L+VF+G GGLS G ++G++ + WAIE AA AF
Sbjct: 396 HQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAF 451
Query: 926 KMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQ 985
++NNPG TVF +DCN +L+ V+ EV + Q+LP+KG+VEMLCGGPPCQGFSGMNRFN
Sbjct: 452 RLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNS 511
Query: 986 RQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFG 1045
R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+T+RCL ++GYQCTFG
Sbjct: 512 RTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFG 571
Query: 1046 TLQAGHF 1052
LQAG +
Sbjct: 572 VLQAGQY 578
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 545 bits (1405), Expect = e-155, Method: Compositional matrix adjust.
Identities = 251/359 (69%), Positives = 294/359 (81%), Gaps = 2/359 (0%)
Query: 1064 TRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1123
+R S FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK SMVLK+T+RCL ++GYQCTF
Sbjct: 639 SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTF 698
Query: 1124 GTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKW 1183
G LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR QL+V + K +VS
Sbjct: 699 GVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITR 758
Query: 1184 TQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICK 1243
S P+RTITVRD MSDLPE++NG E+ Y S FQR++R +P I+ DHICK
Sbjct: 759 LSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQP-ILRDHICK 817
Query: 1244 DMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGV 1303
DM+ LV AR++HIP GSDWRDLPNIEVRL DGT +KL+YTH+D KNG+SS+GALRGV
Sbjct: 818 DMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGV 877
Query: 1304 CSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMG 1363
CSC + K CDP ARQF TLIPWCLPHTGNRHN+W GLYGRL+W+GFFSTT+TNPEPMG
Sbjct: 878 CSCVEAGKA-CDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMG 936
Query: 1364 KQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIK 1422
KQGRVLHPEQHRVVSVRECARSQGFPD ++ G IL+KHRQVGNAVPPP+ +A+G EIK
Sbjct: 937 KQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIK 995
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 231/600 (38%), Positives = 331/600 (55%), Gaps = 24/600 (4%)
Query: 273 SKATTTSLVRDVFENFFKGQLN-----EKHEGPRKKRCGVCEACQQPDCGTCTACLDMVK 327
+KATTT LV +F+ FF Q+ +K +++RCGVCE CQQP+CG C AC DMVK
Sbjct: 18 TKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQQPECGKCKACKDMVK 77
Query: 328 FGGTGKAKQACIKRRCPNKAVQDAEDSDIELDGDEVEEKVVKATTKPSWKIKVTGSGKKQ 387
FGG+G++KQAC +RRCPN A+++A+D + D + E + K + K K +
Sbjct: 78 FGGSGRSKQACQERRCPNMAMKEADDDEEVDDN--IPEM---PSPKKMHQGKKKKQNKNR 132
Query: 388 IEWQGEGEEMDSK-LYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFK 446
I W GE + D K YYK I E ++VGD V V DD + P + +V ++ED N +
Sbjct: 133 ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 192
Query: 447 TRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGG 506
H WF G +TVL SDP ELFL++ C+D+ L+ + + +V + SENWAM+GG
Sbjct: 193 MFHAH--WFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGG 250
Query: 507 CPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGID-KYCFSCDKAEEEEALST 565
P ++ +D ++++Y+ YD +ARF P + K+C SC + E
Sbjct: 251 M-DPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCARLAEMRQKEI 309
Query: 566 PNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEE 625
P + E + Y + G Y++ VY+ P+ F F K S V+ ++ DE+
Sbjct: 310 PRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDED 369
Query: 626 LYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIF-KKKGKKNVSASDVFLTVKKFYRPENT 684
LYPE YRK SDY+KGSN P P+ IG I IF KK + +D+ + V KFYRPENT
Sbjct: 370 LYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENT 429
Query: 685 HRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNE 744
H+S +Y D+N LYWSDEE V VQG+C V ++L +S GP+RFYF E
Sbjct: 430 HKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLE 489
Query: 745 AYNSKTEEFTNLPTEA----LFLXXXXXXXXXXXNQTNKPEEKDEITEWPSIARPLRCLE 800
AYN+K++ F + P A +Q +P E + + P LR L+
Sbjct: 490 AYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPK----LRTLD 545
Query: 801 VFAGAGGLSRGLDKSGVARSTWAIEFDSXXXXXFKMNNPGCTVFVDDCNKILQRVIDNEV 860
VF+G GGLS G ++G++ + WAIE F++NNPG TVF +DCN +L+ V+ E
Sbjct: 546 VFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGET 605
Score = 253 bits (646), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 116/188 (61%), Positives = 146/188 (77%), Gaps = 4/188 (2%)
Query: 865 KNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 924
K+Q +P E + + P LR L+VF+G GGLS G ++G++ + WAIE AA A
Sbjct: 523 KSQACEPSEPEIEIKLPK----LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQA 578
Query: 925 FKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFN 984
F++NNPG TVF +DCN +L+ V+ E + + Q+LP+KG+VEMLCGGPPCQGFSGMNRFN
Sbjct: 579 FRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFN 638
Query: 985 QRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1044
R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK SMVLK+T+RCL ++GYQCTF
Sbjct: 639 SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTF 698
Query: 1045 GTLQAGHF 1052
G LQAG +
Sbjct: 699 GVLQAGQY 706
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 545 bits (1404), Expect = e-155, Method: Compositional matrix adjust.
Identities = 253/362 (69%), Positives = 295/362 (81%), Gaps = 3/362 (0%)
Query: 1064 TRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1123
+R S FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+T+RCL ++GYQCTF
Sbjct: 592 SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTF 651
Query: 1124 GTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKW 1183
G LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR QL+V + K +VS
Sbjct: 652 GVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITR 711
Query: 1184 TQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICK 1243
S P+RTITVRD MSDLPEIQNG E+PY LS FQR++R +P I+ DHICK
Sbjct: 712 LSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHYQP-ILRDHICK 770
Query: 1244 DMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGV 1303
DM+PLV AR++HIP GSDWRDLPNI+VRL DG KLQYT +D+KNG SSTGALRGV
Sbjct: 771 DMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGV 830
Query: 1304 CSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMG 1363
CSCA CDP +RQF TLIPWCLPHTGNRHN+W GLYGRL+W+GFFSTT+TNPEPMG
Sbjct: 831 CSCAEGKA--CDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMG 888
Query: 1364 KQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKR 1423
KQGRVLHPEQHRVVSVRECARSQGFPD ++F G IL++HRQVGNAVPPP+ +A+G EIK
Sbjct: 889 KQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKL 948
Query: 1424 AL 1425
L
Sbjct: 949 CL 950
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/568 (39%), Positives = 319/568 (56%), Gaps = 21/568 (3%)
Query: 301 RKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDG 360
+++RCGVCE CQQP+CG C AC DMVKFGGTG++KQAC+KRRCPN AV++A+D
Sbjct: 4 KRRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCPNLAVKEADDD------ 57
Query: 361 DEVEEKVVKATTKPSWKIKVTG--SGKKQIEWQGEGEEMD-SKLYYKSALIGGEEVKVGD 417
E + V P + K +I W G+ +++ ++ YY+ I E ++VGD
Sbjct: 58 -EEADDDVSEMPSPKKLHQGKKKKQNKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGD 116
Query: 418 YVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEA 477
V V DD + P + +V ++ED KN + H WF G +TVL SDP ELFL+
Sbjct: 117 CVSVIPDDSSKPLYLARVTALWED-KNGQM-MFHAHWFCAGTDTVLGATSDPLELFLVGE 174
Query: 478 CDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCD 537
C+++ L+ + + +V + SENWAM+GG T ED ++++++ Y+ +ARF
Sbjct: 175 CENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFES 234
Query: 538 VP-NEMFSSGIDKYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSC 596
P + K+C SC + E P + E+ Y + ++ G Y+L
Sbjct: 235 PPKTQPTEDNKHKFCLSCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDS 294
Query: 597 VYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVA 656
VY+ P+ F F K S V+ K+ +E LYPE YRK SDY+KGSN P P+ IG I
Sbjct: 295 VYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 354
Query: 657 IFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGK 716
I K K V+ +D+ L + KFYRPENTHRS +Y D+N LYWSDEE V+ SDVQG+
Sbjct: 355 IHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGR 414
Query: 717 CFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEA----LFLXXXXXXXXX 772
C V ++L S +S GP RFYF EAYNSKT+ F + P A
Sbjct: 415 CTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPNHARSPGNKGKGKGKGKGK 474
Query: 773 XXNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSXXXX 832
+Q ++P+E + + P LR L+VF+G GGLS G ++G++ + WAIE
Sbjct: 475 GKHQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQ 530
Query: 833 XFKMNNPGCTVFVDDCNKILQRVIDNEV 860
F++NNPG TVF +DCN +L+ V+ EV
Sbjct: 531 AFRLNNPGTTVFTEDCNVLLKLVMAGEV 558
Score = 253 bits (647), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 4/187 (2%)
Query: 866 NQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAF 925
+Q ++P+E + + P LR L+VF+G GGLS G ++G++ + WAIE AA AF
Sbjct: 477 HQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAF 532
Query: 926 KMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQ 985
++NNPG TVF +DCN +L+ V+ EV + Q+LP+KG+VEMLCGGPPCQGFSGMNRFN
Sbjct: 533 RLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNS 592
Query: 986 RQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFG 1045
R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+T+RCL ++GYQCTFG
Sbjct: 593 RTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFG 652
Query: 1046 TLQAGHF 1052
LQAG +
Sbjct: 653 VLQAGQY 659
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 545 bits (1404), Expect = e-155, Method: Compositional matrix adjust.
Identities = 251/359 (69%), Positives = 294/359 (81%), Gaps = 2/359 (0%)
Query: 1064 TRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1123
+R S FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK SMVLK+T+RCL ++GYQCTF
Sbjct: 593 SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTF 652
Query: 1124 GTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKW 1183
G LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR QL+V + K +VS
Sbjct: 653 GVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITR 712
Query: 1184 TQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICK 1243
S P+RTITVRD MSDLPE++NG E+ Y S FQR++R +P I+ DHICK
Sbjct: 713 LSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQP-ILRDHICK 771
Query: 1244 DMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGV 1303
DM+ LV AR++HIP GSDWRDLPNIEVRL DGT +KL+YTH+D KNG+SS+GALRGV
Sbjct: 772 DMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGV 831
Query: 1304 CSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMG 1363
CSC + K CDP ARQF TLIPWCLPHTGNRHN+W GLYGRL+W+GFFSTT+TNPEPMG
Sbjct: 832 CSCVEAGKA-CDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMG 890
Query: 1364 KQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIK 1422
KQGRVLHPEQHRVVSVRECARSQGFPD ++ G IL+KHRQVGNAVPPP+ +A+G EIK
Sbjct: 891 KQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIK 949
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 219/567 (38%), Positives = 314/567 (55%), Gaps = 19/567 (3%)
Query: 301 RKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDG 360
+++RCGVCE CQQP+CG C AC DMVKFGG+G++KQAC +RRCPN A+++A+D + D
Sbjct: 5 KRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDN 64
Query: 361 DEVEEKVVKATTKPSWKIKVTGSGKKQIEWQGEGEEMDSK-LYYKSALIGGEEVKVGDYV 419
+ E + K + K K +I W GE + D K YYK I E ++VGD V
Sbjct: 65 --IPEM---PSPKKMHQGKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCV 119
Query: 420 MVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACD 479
V DD + P + +V ++ED N + H WF G +TVL SDP ELFL++ C+
Sbjct: 120 SVIPDDSSKPLYLARVTALWEDSSNGQMFHAH--WFCAGTDTVLGATSDPLELFLVDECE 177
Query: 480 DVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVP 539
D+ L+ + + +V + SENWAM+GG P ++ +D ++++Y+ YD +ARF P
Sbjct: 178 DMQLSYIHSKVKVIYKAPSENWAMEGGM-DPESLLEGDDGKTYFYQLWYDQDYARFESPP 236
Query: 540 NEMFSSGID-KYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVY 598
+ K+C SC + E P + E + Y + G Y++ VY
Sbjct: 237 KTQPTEDNKFKFCVSCARLAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVY 296
Query: 599 VNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIF 658
+ P+ F F K S V+ ++ DE+LYPE YRK SDY+KGSN P P+ IG I IF
Sbjct: 297 LPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIF 356
Query: 659 -KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKC 717
KK + +D+ + V KFYRPENTH+S +Y D+N LYWSDEE V VQG+C
Sbjct: 357 CPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRC 416
Query: 718 FVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEA----LFLXXXXXXXXXX 773
V ++L +S GP+RFYF EAYN+K++ F + P A
Sbjct: 417 TVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKP 476
Query: 774 XNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSXXXXX 833
+Q +P E + + P LR L+VF+G GGLS G ++G++ + WAIE
Sbjct: 477 KSQACEPSEPEIEIKLPK----LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQA 532
Query: 834 FKMNNPGCTVFVDDCNKILQRVIDNEV 860
F++NNPG TVF +DCN +L+ V+ E
Sbjct: 533 FRLNNPGSTVFTEDCNILLKLVMAGET 559
Score = 253 bits (645), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 116/188 (61%), Positives = 146/188 (77%), Gaps = 4/188 (2%)
Query: 865 KNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 924
K+Q +P E + + P LR L+VF+G GGLS G ++G++ + WAIE AA A
Sbjct: 477 KSQACEPSEPEIEIKLPK----LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQA 532
Query: 925 FKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFN 984
F++NNPG TVF +DCN +L+ V+ E + + Q+LP+KG+VEMLCGGPPCQGFSGMNRFN
Sbjct: 533 FRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFN 592
Query: 985 QRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1044
R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK SMVLK+T+RCL ++GYQCTF
Sbjct: 593 SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTF 652
Query: 1045 GTLQAGHF 1052
G LQAG +
Sbjct: 653 GVLQAGQY 660
>pdb|3EPZ|A Chain A, Structure Of The Replication Foci-Targeting Sequence Of
Human Dna Cytosine Methyltransferase Dnmt1
pdb|3EPZ|B Chain B, Structure Of The Replication Foci-Targeting Sequence Of
Human Dna Cytosine Methyltransferase Dnmt1
Length = 268
Score = 222 bits (566), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 161/247 (65%), Gaps = 7/247 (2%)
Query: 11 RCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETS---DEIDDAPLSRITCF 67
+C C + LDDP L Q HP +A + LT+ L +FD + + P ++TCF
Sbjct: 20 KCIQCGQYLDDPDLKYGQ-HPPDAVDEPQXLTNEKLSIFDANESGFESYEALPQHKLTCF 78
Query: 68 SVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYD 127
SVY ++GHLCP DTGL+EKN+ L FSG K I +DP+ EGG+ K +GPIN W I G+D
Sbjct: 79 SVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFD 138
Query: 128 GGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNT 187
GGE+A I +T F+E +L +PS EY P EKIY+ K+V+E + + ++T+EDL+N
Sbjct: 139 GGEKALIGFSTSFAEYILXDPSPEYAPIFGLXQEKIYISKIVVEFLQSNSDSTYEDLINK 198
Query: 188 LQTATLPASVGV--LSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAG 245
++T P+ + + +ED LLRHAQF+ +QV +D+A + +DE + +TPC R LI+LAG
Sbjct: 199 IETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEAGD-SDEQPIFLTPCXRDLIKLAG 257
Query: 246 VTFGQRK 252
VT GQR+
Sbjct: 258 VTLGQRR 264
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-15)k9me2
Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-15)k9me2
Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-32)k9me2
Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-32)k9me2
Peptide And Sah
Length = 784
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 160/361 (44%), Gaps = 48/361 (13%)
Query: 1071 KNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGH 1130
KN +V+++ Y +P++ L+ENV + + F + + K + CL + YQ G + AG
Sbjct: 409 KNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGC 468
Query: 1131 FGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYR 1190
+G+ Q R R + A VLPKYP P R N + V+ + + + +
Sbjct: 469 YGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAF--SQCMVAYDETQKPSLKK 526
Query: 1191 TITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIIS------------ 1238
+ + D +SDLP++QN + + Y + + FQR +R + S
Sbjct: 527 ALLLGDAISDLPKVQNHQPNDVMEYGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEGKL 586
Query: 1239 -DHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSST 1297
DH + R++ IP +G+++RDL + V + +++ K S+
Sbjct: 587 LDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVG------ANNIVEWDPEIERVKLSS 640
Query: 1298 GALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTIT 1357
G PL + +GRL W+ T +T
Sbjct: 641 GK----------------PLVPDYAMSF---------IKGKSLKPFGRLWWDETVPTVVT 675
Query: 1358 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEAL 1417
EP + ++HP Q RV+++RE AR QGFPD+++ G I EK+ QVGNAV P+ AL
Sbjct: 676 RAEPHNQV--IIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARAL 733
Query: 1418 G 1418
G
Sbjct: 734 G 734
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 108/462 (23%), Positives = 196/462 (42%), Gaps = 57/462 (12%)
Query: 618 KRPVEDEELYPEAYRKLSD-----YMKGSNAYTPAPFG----IGYIVAIFKKKGKKNVSA 668
K+P E+EEL + + + Y G + Y A IG I F+ + +
Sbjct: 34 KKPDEEEELKARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCH--- 90
Query: 669 SDVFLTVKKFYRPENTHRSVEFTYQLDLNK-----LYWSDEEEQVSLSDVQGKCFVVCED 723
+ T + F+R E+T + + +D +K ++ S+E+ L + K +V D
Sbjct: 91 ---YFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD 147
Query: 724 NLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLXXXXXXXXXXXNQTNKPEEK 783
+ Y++ +Y+ F N+ +E + T
Sbjct: 148 PNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISSE----------NGQSGSDTASGISS 197
Query: 784 DEITEWPSIARPLR---CLEVFAGAGGLSRGL----DKSGVARST-WAIEFDSXXXXXFK 835
D++ S + P R L++++G GG+S GL SG+ T WA++F+S K
Sbjct: 198 DDVDLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLK 257
Query: 836 MNNPGCTVFVDDCNKILQRVIDNEVWGKGKNQ---TNKPEEKDEITEWPSIARPLRCLEV 892
N+P V + ++ L + + V K Q +N +D+ E + + +E
Sbjct: 258 YNHPQTEVRNEKADEFLALLKEWAVLCKKYVQDVDSNLASSEDQADEDSPLDKDEFVVEK 317
Query: 893 FAGA--GGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNE 950
G GG R ++G+ + T ++N + DC + ++ +
Sbjct: 318 LVGICYGGSDR---ENGIYFKVQWEGYGPEEDTWEPIDN------LSDCPQKIREFVQE- 367
Query: 951 VCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQ--YSAFKNSLIVSYLSYCDYYRP 1008
K++ LP G+V+++CGGPPCQG SG NR+ R KN +V+++ Y +P
Sbjct: 368 --GHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKP 425
Query: 1009 RFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAG 1050
++ L+ENV + + F + + K + CL + YQ G + AG
Sbjct: 426 KYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAG 467
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 46/252 (18%)
Query: 393 EGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHI 452
E EE+ ++ +Y+SA + +GD V V++ + N +G++ +E T +CH
Sbjct: 38 EEEELKARCHYRSAKVDNVVYCLGDDVYVKAGE-NEADYIGRITEFFE-----GTDQCHY 91
Query: 453 L---WFARGQETVLEEL---------SDPQELFLLEACDDVSLNAVANLCQVKHFPISEN 500
WF R ++TV+ L DP+ +FL E +D L+ + + ++ H + +
Sbjct: 92 FTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMD 151
Query: 501 WAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYC-FSCDKAEE 559
P + YY +Y ++ F ++ +E SG D S D +
Sbjct: 152 ---------PKAKAQLIESCDLYYDMSYSVAYSTFANISSENGQSGSDTASGISSDDVDL 202
Query: 560 EEALSTPNLRNLTEQGTTHEYYN---------CVSYEGEQYKLKSCVYVNPDCFKFKS-- 608
E + S P T T + Y+ C+ KL++ V+ + F +S
Sbjct: 203 ETSSSMP-----TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLK 257
Query: 609 --KPQSAVQNNK 618
PQ+ V+N K
Sbjct: 258 YNHPQTEVRNEK 269
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 153/610 (25%), Positives = 238/610 (39%), Gaps = 113/610 (18%)
Query: 862 GKGKNQTNKPEEKDEITEWPSIARPLR---CLEVFAGAGGLSRGL----DKSGVARST-W 913
G+ + T D++ S + P R L++++G GG S GL SG+ T W
Sbjct: 185 GQSGSDTASGISSDDVDLETSSSXPTRTATLLDLYSGCGGXSTGLCLGAALSGLKLETRW 244
Query: 914 AIEFDSAAATAFKMNNPGCTV--------------FVDDCNKILQRVIDNEVC--DDKKQ 957
A++F+S A + K N+P V + C K +Q V N D +
Sbjct: 245 AVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKYVQDVDSNLASSEDQADE 304
Query: 958 KLPRKGE---VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLE 1014
P + VE L G C G G +R N + + + Y P E
Sbjct: 305 DSPLDKDEFVVEKLVG--ICYG--GSDRENG-----------IYFKVQWEGYGPEEDTWE 349
Query: 1015 NVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAF---- 1070
+ N +R Q G++ L G D C G +G S F
Sbjct: 350 PIDNLSD------CPQKIREFVQEGHKRKILPL-PGDVD---VICGGPPCQGISGFNRYR 399
Query: 1071 ---------KNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQC 1121
KN V++ Y +P++ L ENV + + F + + K + CL YQ
Sbjct: 400 NRDEPLKDEKNKQXVTFXDIVAYLKPKYVLXENVVDILKFADGYLGKYALSCLVAXKYQA 459
Query: 1122 TFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTC 1181
G AG +G+ Q R R + A VLPKYP P R N + V+
Sbjct: 460 RLGXXVAGCYGLPQFRXRVFLWGALSSXVLPKYPLPTYDVVVRGGAPNAF--SQCXVAYD 517
Query: 1182 KWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIIS--- 1238
+ + + + + + D +SDLP++QN + Y + + FQR +R + S
Sbjct: 518 ETQKPSLKKALLLGDAISDLPKVQNHQPNDVXEYGGSPKTEFQRYIRLSRKDXLDWSFGE 577
Query: 1239 ----------DHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHN 1288
DH + R++ IP +G+++RDL + V +
Sbjct: 578 GAGPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVG------ANNIVEWDP 631
Query: 1289 DMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQW 1348
+++ K S+G PL + +GRL W
Sbjct: 632 EIERVKLSSGK----------------PLVPDYAXSF---------IKGKSLKPFGRLWW 666
Query: 1349 NGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNA 1408
+ T +T EP + ++HP Q RV+++RE AR QGFPD+++ G I EK+ QVGNA
Sbjct: 667 DETVPTVVTRAEPHNQV--IIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNA 724
Query: 1409 VPPPMGEALG 1418
V P+ ALG
Sbjct: 725 VAVPVARALG 734
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/462 (23%), Positives = 190/462 (41%), Gaps = 57/462 (12%)
Query: 618 KRPVEDEELYPEAYRKLSD-----YMKGSNAYTPAPFG----IGYIVAIFKKKGKKNVSA 668
K+P E+EEL + + + Y G + Y A IG I F+ + +
Sbjct: 34 KKPDEEEELKARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCH--- 90
Query: 669 SDVFLTVKKFYRPENTHRSVEFTYQLDLNK-----LYWSDEEEQVSLSDVQGKCFVVCED 723
+ T + F+R E+T + + +D +K ++ S+E+ L + K +V D
Sbjct: 91 ---YFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD 147
Query: 724 NLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLXXXXXXXXXXXNQTNKPEEK 783
+ Y++ +Y+ F N+ +E + T
Sbjct: 148 PNXDPKAKAQLIESCDLYYDXSYSVAYSTFANISSE----------NGQSGSDTASGISS 197
Query: 784 DEITEWPSIARPLR---CLEVFAGAGGLSRGL----DKSGVARST-WAIEFDSXXXXXFK 835
D++ S + P R L++++G GG S GL SG+ T WA++F+S K
Sbjct: 198 DDVDLETSSSXPTRTATLLDLYSGCGGXSTGLCLGAALSGLKLETRWAVDFNSFACQSLK 257
Query: 836 MNNPGCTVFVDDCNKILQRVIDNEVWGKGKNQ---TNKPEEKDEITEWPSIARPLRCLEV 892
N+P V + ++ L + + V K Q +N +D+ E + + +E
Sbjct: 258 YNHPQTEVRNEKADEFLALLKEWAVLCKKYVQDVDSNLASSEDQADEDSPLDKDEFVVEK 317
Query: 893 FAGA--GGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNE 950
G GG R ++G+ + T ++N + DC + ++ +
Sbjct: 318 LVGICYGGSDR---ENGIYFKVQWEGYGPEEDTWEPIDN------LSDCPQKIREFVQE- 367
Query: 951 VCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQ--YSAFKNSLIVSYLSYCDYYRP 1008
K++ LP G+V+++CGGPPCQG SG NR+ R KN V++ Y +P
Sbjct: 368 --GHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQXVTFXDIVAYLKP 425
Query: 1009 RFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAG 1050
++ L ENV + + F + + K + CL YQ G AG
Sbjct: 426 KYVLXENVVDILKFADGYLGKYALSCLVAXKYQARLGXXVAG 467
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 46/252 (18%)
Query: 393 EGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHI 452
E EE+ ++ +Y+SA + +GD V V++ + N +G++ +E T +CH
Sbjct: 38 EEEELKARCHYRSAKVDNVVYCLGDDVYVKAGE-NEADYIGRITEFFE-----GTDQCHY 91
Query: 453 L---WFARGQETVLEEL---------SDPQELFLLEACDDVSLNAVANLCQVKHFPISEN 500
WF R ++TV+ L DP+ +FL E +D L+ + + ++ H + +
Sbjct: 92 FTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNXD 151
Query: 501 WAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYC-FSCDKAEE 559
P + YY +Y ++ F ++ +E SG D S D +
Sbjct: 152 ---------PKAKAQLIESCDLYYDXSYSVAYSTFANISSENGQSGSDTASGISSDDVDL 202
Query: 560 EEALSTPNLRNLTEQGTTHEYYN---------CVSYEGEQYKLKSCVYVNPDCFKFKS-- 608
E + S P T T + Y+ C+ KL++ V+ + F +S
Sbjct: 203 ETSSSXP-----TRTATLLDLYSGCGGXSTGLCLGAALSGLKLETRWAVDFNSFACQSLK 257
Query: 609 --KPQSAVQNNK 618
PQ+ V+N K
Sbjct: 258 YNHPQTEVRNEK 269
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNKIL 943
R +++FAG GG+ RG + G + + E++ A +K N +P F +D I
Sbjct: 89 FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDIT 147
Query: 944 ----QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQR-QYSAF----K 992
+ V D + +Q +P E ++L G PCQ FS G+++ N + F +
Sbjct: 148 LSHQEGVSDEAAAEHIRQHIP---EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQ 204
Query: 993 NSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT 1043
+L + D RP F+LENV+N + ++ + L ++GY
Sbjct: 205 GTLFFDVVRIIDARRPAXFVLENVKNLKSHDKGKTFRIIXQTLDELGYDVA 255
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNKIL 943
R +++FAG GG+ RG + G + + E++ A +K N +P F +D I
Sbjct: 27 FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDIT 85
Query: 944 ----QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQR-QYSAF----K 992
+ V D + +Q +P E ++L G PCQ FS G+++ N + F +
Sbjct: 86 LSHQEGVSDEAAAEHIRQHIP---EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQ 142
Query: 993 NSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT 1043
+L + D RP F+LENV+N + ++ + L ++GY
Sbjct: 143 GTLFFDVVRIIDARRPAXFVLENVKNLKSHDKGKTFRIIXQTLDELGYDVA 193
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
L +++F+G GGLS G ++G A+E D A +N P +D + + +
Sbjct: 3 LNVIDLFSGVGGLSLGAARAGFDVKM-AVEIDQHAINTHAINFPRSLHVQEDVSLLNAEI 61
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
I +D +P ++ + GGPPCQGFS + + N +N L + +
Sbjct: 62 IKGFFKND----MP----IDGIIGGPPCQGFSSIGKGNPDDS---RNQLYMHFYRLVSEL 110
Query: 1007 RPRFFLLENVRNFVAFKNSMV 1027
+P FFL ENV + K S +
Sbjct: 111 QPLFFLAENVPGIMQEKYSGI 131
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEAL 1417
R +HP RV++ RE AR QGFPD +FH T RQ+GN+V P + E +
Sbjct: 309 RPIHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVAEYI 359
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSIQGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+NF + N L++
Sbjct: 80 PCQAFSIQGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRERIYMI 169
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+NF + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLP---KYPEPWT-------VFSP 1163
+ ++ Y L A +G+ Q +R AI + ++ ++P+P+ + P
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQ-KREAIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLP 198
Query: 1164 RTSQLNVTISKKTYVSTCKWTQSAPYRTITV 1194
+ ++ I +K V T + + +T+ +
Sbjct: 199 DSEVEHLVIDRKDLVMTNQEIEQTTPKTVRL 229
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna Methyltransferase:
An Insight Into Protein-Protein Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna Methyltransferase:
An Insight Into Protein-Protein Interactions
Length = 327
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 1362 MGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREI 1421
K G L + R + RECAR G+PD +K H + + ++Q GN+V + + + I
Sbjct: 259 FAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
Query: 1422 KRAL 1425
+L
Sbjct: 319 GSSL 322
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+NF + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRERIYMI 169
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Unmodified
Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native Dna
And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy And
Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy And
Hemimethylated Dna Containing 5,6-Dihydro-5-Azacytosine
At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet Formed
In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+NF + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRERIYMI 169
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 36/90 (40%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+NF + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRENIYMI 169
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 36/90 (40%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+NF + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKNERIYMI 169
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 31/197 (15%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
+ + +F+GAGGL G K+G R A E+D + ++ N+ ++
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-------------KL 46
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
I ++ + P+ + + GGPPCQ +S R + L Y+
Sbjct: 47 IKGDISKISSDEFPK---CDGIIGGPPCQSWSEGGSL--RGIDDPRGKLFYEYIRILKQK 101
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF----DPTPCYCIGC 1062
+P FFL ENV+ +A +++ ++ ++ GY L A + D + IG
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG- 160
Query: 1063 CTRGSSAFKNSLIVSYL 1079
F+ L ++YL
Sbjct: 161 -------FRKELNINYL 170
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1374 HRVVSVRECARSQGFPDHHKFHGTIL-EKHRQVGNAVPPPMGEALGREIKRAL 1425
+R ++VRECAR QGFPD FH L + ++ +GNAVP + + + IK AL
Sbjct: 272 YRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSAL 324
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + G RG + L Y+ +P FFL ENV+ +A +++ ++ ++
Sbjct: 70 PCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQE 129
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 1144
GY L A +GV+Q R+R +
Sbjct: 130 FDNAGYDVHIILLNANDYGVAQDRKRVFYIG 160
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target Base
(Gpgc:gmgc) And Sah
Length = 327
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+NF + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRERIYMI 169
>pdb|2J2S|A Chain A, Solution Structure Of The Nonmethyl-cpg-binding Cxxc
Domain Of The Leukaemia-associated Mll Histone
Methyltransferase
Length = 72
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 297 HEGPRKKRCGVCEACQQP-DCGTCTACLDMVKFGGTGKAKQACIKRRCPN 345
+G R +RCG C CQ P DCG CT CLD KFGG KQ C R+C N
Sbjct: 5 KKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQN 54
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna Methyltransferase
Homologue
Length = 343
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 886 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 944
PLR LE+++G GG+ L +S + A+ AI+ ++ A +K N P + I
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61
Query: 945 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 1004
D D M+ PPCQ F+ + R +S S+L D
Sbjct: 62 EEFDRLSFD-------------MILMSPPCQPFTRIGR-----QGDMTDSRTNSFLHILD 103
Query: 1005 YY-----RPRFFLLENVRNF 1019
P++ LLENV+ F
Sbjct: 104 ILPRLQKLPKYILLENVKGF 123
Score = 33.9 bits (76), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 1087 PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA- 1145
P++ LLENV+ F+ S + ++ + G+Q L G+ +R R ++A
Sbjct: 112 PKYILLENVK---GFEVSSTRDLLIQTIENXGFQYQEFLLSPTSLGIPNSRLRYFLIAKL 168
Query: 1146 --------APGEVLPKYPE 1156
APG+VL ++P+
Sbjct: 169 QSEPLPFQAPGQVLMEFPK 187
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ ++NV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMQNVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 37/90 (41%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ ++NV+NF + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMQNVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRERIYMI 169
>pdb|2KKF|A Chain A, Solution Structure Of Mll Cxxc Domain In Complex With
Palindromic Cpg Dna
Length = 59
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 297 HEGPRKKRCGVCEACQQP-DCGTCTACLDMVKFGGTGKAKQACIKRRCPN 345
+G R +RCG C CQ P DCG CT CLD KFGG KQ C R+C N
Sbjct: 3 KKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQN 52
>pdb|4BBQ|A Chain A, Crystal Structure Of The Cxxc And Phd Domain Of Human
Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
pdb|4BBQ|B Chain B, Crystal Structure Of The Cxxc And Phd Domain Of Human
Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
Length = 117
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 301 RKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRC 343
R+ RC C+AC Q +CG C C DM KFGG G+ KQ+C+ R+C
Sbjct: 3 RRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQC 45
>pdb|2JYI|A Chain A, Solution Structure Of Mll Cxxc Domain
Length = 57
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 297 HEGPRKKRCGVCEACQQP-DCGTCTACLDMVKFGGTGKAKQACIKRRCPN 345
+G R +RCG C CQ P DCG CT CLD KFGG KQ C R+C N
Sbjct: 1 KKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQN 50
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ + NV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMANVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 36/90 (40%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ + NV+NF + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMANVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRERIYMI 169
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1374 HRVVSVRECARSQGFPDHHKFHGTIL-EKHRQVGNAVPPPMGEALGREIKRAL 1425
+R ++VRECAR QGFPD FH L + ++ +GNAVP + + + IK AL
Sbjct: 272 YRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSAL 324
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 31/197 (15%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
+ + +F+GAGGL G K+G R A E+D + ++ N+ ++
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-------------KL 46
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
I ++ + P+ + + GGPP Q +S R + L Y+
Sbjct: 47 IKGDISKISSDEFPK---CDGIIGGPPSQSWSEGGSL--RGIDDPRGKLFYEYIRILKQK 101
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF----DPTPCYCIGC 1062
+P FFL ENV+ +A +++ ++ ++ GY L A + D + IG
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG- 160
Query: 1063 CTRGSSAFKNSLIVSYL 1079
F+ L ++YL
Sbjct: 161 -------FRKELNINYL 170
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P+ + G RG + L Y+ +P FFL ENV+ +A +++ ++ ++
Sbjct: 70 PSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQE 129
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 1144
GY L A +GV+Q R+R +
Sbjct: 130 FDNAGYDVHIILLNANDYGVAQDRKRVFYIG 160
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna Cytosine
Methylation
Length = 327
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G P Q FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPAQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+NF + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 37/90 (41%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+NF + N L++
Sbjct: 80 PAQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRERIYMI 169
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
+P+ +ENV+N + N L++ + ++ Y L A
Sbjct: 112 KPKVVFMENVKNAASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R LHP RECAR G+PD +K H + + ++Q GN+V + + + I +L
Sbjct: 272 RKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSL 322
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 36/90 (40%)
Query: 1054 PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 1113
P + I +G + +L +P+ +ENV+N + N L++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNAASHDNGNTLEVVKNT 139
Query: 1114 LTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 1143
+ ++ Y L A +G+ Q R R ++
Sbjct: 140 MNELDYSFHAKVLNALDYGIPQKRERIYMI 169
>pdb|3QMB|A Chain A, Structural Basis Of Selective Binding Of Nonmethylated Cpg
Islands By The Cxxc Domain Of Cfp1
pdb|3QMC|A Chain A, Structural Basis Of Selective Binding Of Nonmethylated Cpg
Islands By The Cxxc Domain Of Cfp1
pdb|3QMD|A Chain A, Structural Basis Of Selective Binding Of Nonmethylated Cpg
Islands By The Cxxc Domain Of Cfp1
pdb|3QMG|A Chain A, Structural Basis Of Selective Binding Of Non-Methylated
Cpg Islands By The Cxxc Domain Of Cfp1
pdb|3QMH|A Chain A, Structural Basis Of Selective Binding Of Non-Methylated
Cpg Islands (Dna-Tcga) By The Cxxc Domain Of Cfp1
pdb|3QMI|A Chain A, Structural Basis Of Selective Binding Of Non-Methylated
Cpg Islands (Dna-Acgt) By The Cxxc Domain Of Cfp1
Length = 79
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 288 FFKGQLNEKHEGPRKKRCGVCEACQQP-DCGTCTACLDMVKFGGTGKAKQACIKRRCPNK 346
+F+GQ+ + CG CEAC++ DCG C C DM KFGG K +Q C R+C +
Sbjct: 14 YFQGQIKRS-----ARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLR 68
Query: 347 A 347
A
Sbjct: 69 A 69
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 26/158 (16%)
Query: 888 RCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
+ LE+++G GG+ +SG+ A++ ++ A + +K N P + + ++ +V
Sbjct: 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQV 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRF---NQRQYSAFKNSL-IVSYLSY 1002
I +K V+ + PPCQ F+ ++ N + ++F + I+ L
Sbjct: 65 I-------------KKWNVDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDN 111
Query: 1003 CDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGY 1040
DY L+ENV+ F+NS V + + L + +
Sbjct: 112 VDY-----ILMENVK---GFENSTVRNLFIDKLKECNF 141
>pdb|4DKJ|A Chain A, Cpg Specific Methyltransferase In Complex With Target Dna
Length = 403
Score = 39.3 bits (90), Expect = 0.018, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 1087 PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAA 1146
P++ L+ENV+N ++ KN ++ L + GY+ L + +F Q R R L+
Sbjct: 178 PKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIR 237
Query: 1147 PGEVLP---KYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDL 1201
+ K+ E V +P ++ + Y K+ Y T T R+ S++
Sbjct: 238 DDYLEKTGFKFKELEKVKNPPKKIKDILVDSSNY----KYLNLNKYETTTFRETKSNI 291
Score = 33.9 bits (76), Expect = 0.74, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 1008 PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGS 1067
P++ L+ENV+N ++ KN ++ L + GY+ L + +FD C
Sbjct: 178 PKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDN--------CQNRE 229
Query: 1068 SAFKNSLIVSYLSYCDYYRPRFFLLENVRN 1097
F S+ YL + +F LE V+N
Sbjct: 230 RVFCLSIRDDYLEKTGF---KFKELEKVKN 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,620,351
Number of Sequences: 62578
Number of extensions: 2038975
Number of successful extensions: 4207
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3988
Number of HSP's gapped (non-prelim): 117
length of query: 1522
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1411
effective length of database: 8,027,179
effective search space: 11326349569
effective search space used: 11326349569
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)