Query psy16462
Match_columns 1522
No_of_seqs 563 out of 2672
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:57:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00675 dcm DNA-methyltransf 100.0 2.8E-57 6E-62 531.0 22.2 308 889-1421 1-315 (315)
2 PF00145 DNA_methylase: C-5 cy 100.0 9.7E-58 2.1E-62 536.2 13.5 168 887-1152 1-168 (335)
3 COG0270 Dcm Site-specific DNA 100.0 8.2E-55 1.8E-59 513.1 23.7 323 885-1427 2-326 (328)
4 cd00315 Cyt_C5_DNA_methylase C 100.0 1.8E-53 3.9E-58 490.2 22.5 169 887-1152 1-169 (275)
5 PRK10458 DNA cytosine methylas 100.0 2.5E-49 5.5E-54 479.2 23.6 183 885-1151 87-292 (467)
6 cd04708 BAH_plantDCM_II BAH, o 100.0 2.4E-42 5.1E-47 370.8 17.0 196 584-808 1-202 (202)
7 cd04711 BAH_Dnmt1_II BAH, or B 100.0 8.2E-38 1.8E-42 312.7 10.7 136 623-758 1-137 (137)
8 cd04760 BAH_Dnmt1_I BAH, or Br 100.0 2.1E-34 4.6E-39 288.3 11.7 124 410-536 1-124 (124)
9 PF12047 DNMT1-RFD: Cytosine s 100.0 1.9E-29 4.2E-34 264.7 10.5 134 57-191 2-146 (146)
10 cd04712 BAH_DCM_I BAH, or Brom 99.9 1.3E-27 2.9E-32 244.7 12.7 115 409-540 2-130 (130)
11 cd04716 BAH_plantDCM_I BAH, or 99.9 2.3E-26 4.9E-31 232.4 12.3 119 410-540 1-122 (122)
12 KOG0919|consensus 99.9 1.6E-25 3.4E-30 240.1 8.3 165 885-1147 2-170 (338)
13 cd04710 BAH_fungalPHD BAH, or 99.9 7.3E-24 1.6E-28 218.0 12.0 123 584-753 5-133 (135)
14 cd04713 BAH_plant_3 BAH, or Br 99.9 1.4E-22 3E-27 212.2 14.2 129 397-540 5-138 (146)
15 cd04716 BAH_plantDCM_I BAH, or 99.9 2.3E-22 5E-27 203.4 12.2 122 588-758 1-122 (122)
16 cd04709 BAH_MTA BAH, or Bromo 99.9 2.5E-22 5.4E-27 212.3 11.7 127 589-765 2-148 (164)
17 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 3.5E-22 7.6E-27 203.0 10.1 117 410-535 1-119 (121)
18 cd04717 BAH_polybromo BAH, or 99.9 1.3E-21 2.7E-26 199.3 11.5 118 410-539 1-120 (121)
19 PF01426 BAH: BAH domain; Int 99.9 1.3E-21 2.8E-26 197.8 9.7 119 411-539 1-119 (119)
20 cd04713 BAH_plant_3 BAH, or Br 99.8 6.4E-21 1.4E-25 199.7 14.0 131 577-758 7-138 (146)
21 cd04370 BAH BAH, or Bromo Adja 99.8 4.3E-21 9.2E-26 194.4 11.4 118 410-538 1-122 (123)
22 smart00439 BAH Bromo adjacent 99.8 1.2E-20 2.6E-25 190.9 11.7 118 412-539 1-120 (120)
23 PF01426 BAH: BAH domain; Int 99.8 2.2E-20 4.7E-25 188.9 11.6 119 589-757 1-119 (119)
24 cd04717 BAH_polybromo BAH, or 99.8 2.7E-20 5.8E-25 189.6 11.2 120 588-757 1-120 (121)
25 cd04715 BAH_Orc1p_like BAH, or 99.8 1.9E-19 4.2E-24 190.0 13.2 106 389-498 6-122 (159)
26 cd04370 BAH BAH, or Bromo Adja 99.8 1.2E-19 2.6E-24 183.8 10.9 122 588-756 1-122 (123)
27 cd04714 BAH_BAHCC1 BAH, or Bro 99.8 1.1E-19 2.4E-24 184.8 10.1 115 588-752 1-118 (121)
28 smart00439 BAH Bromo adjacent 99.8 3.6E-19 7.8E-24 180.1 12.2 104 646-757 16-120 (120)
29 cd04710 BAH_fungalPHD BAH, or 99.8 3E-19 6.4E-24 184.1 11.3 120 406-537 5-135 (135)
30 cd04709 BAH_MTA BAH, or Bromo 99.7 6.4E-18 1.4E-22 179.0 11.2 116 411-540 2-141 (164)
31 cd04721 BAH_plant_1 BAH, or Br 99.7 4.4E-18 9.5E-23 174.7 9.1 112 407-531 2-117 (130)
32 cd04708 BAH_plantDCM_II BAH, o 99.7 1E-17 2.2E-22 181.1 11.5 122 407-540 2-147 (202)
33 cd04718 BAH_plant_2 BAH, or Br 99.7 2.2E-18 4.8E-23 176.8 1.9 94 429-538 52-147 (148)
34 cd04715 BAH_Orc1p_like BAH, or 99.7 5.1E-17 1.1E-21 171.7 11.9 128 577-751 16-149 (159)
35 cd04721 BAH_plant_1 BAH, or Br 99.7 1.4E-16 3E-21 163.7 9.4 116 584-749 1-117 (130)
36 cd04719 BAH_Orc1p_animal BAH, 99.7 1.7E-16 3.7E-21 161.5 9.6 111 411-533 2-123 (128)
37 cd04712 BAH_DCM_I BAH, or Brom 99.6 1.2E-15 2.5E-20 156.9 13.1 124 587-757 2-129 (130)
38 cd04760 BAH_Dnmt1_I BAH, or Br 99.6 1.9E-15 4.1E-20 152.3 10.5 115 588-753 1-123 (124)
39 cd04718 BAH_plant_2 BAH, or Br 99.6 1.3E-16 2.7E-21 164.0 1.4 96 648-756 52-147 (148)
40 cd04720 BAH_Orc1p_Yeast BAH, o 99.5 8E-14 1.7E-18 150.9 11.1 120 407-538 47-177 (179)
41 cd04711 BAH_Dnmt1_II BAH, or B 99.5 3.7E-14 8.1E-19 143.3 7.2 115 416-540 13-137 (137)
42 KOG1886|consensus 99.5 3.9E-14 8.5E-19 167.9 7.0 129 399-540 36-170 (464)
43 cd04720 BAH_Orc1p_Yeast BAH, o 99.4 7.9E-13 1.7E-17 143.2 11.3 125 583-755 44-176 (179)
44 KOG1827|consensus 99.4 1.2E-12 2.7E-17 160.6 10.0 123 406-540 184-308 (629)
45 PF02008 zf-CXXC: CXXC zinc fi 99.4 2.3E-13 5E-18 114.2 1.9 44 300-343 3-47 (47)
46 cd04719 BAH_Orc1p_animal BAH, 99.3 4E-12 8.7E-17 129.8 9.0 117 589-751 2-123 (128)
47 PF00145 DNA_methylase: C-5 cy 99.3 1.5E-12 3.2E-17 153.6 5.9 56 1368-1423 280-335 (335)
48 COG0270 Dcm Site-specific DNA 99.3 8.3E-12 1.8E-16 148.4 10.5 61 794-855 2-62 (328)
49 TIGR00675 dcm DNA-methyltransf 99.2 3.8E-11 8.2E-16 142.0 8.4 53 798-852 1-53 (315)
50 KOG1886|consensus 99.1 5.3E-11 1.2E-15 141.6 7.1 132 578-758 37-170 (464)
51 cd00315 Cyt_C5_DNA_methylase C 99.0 1.9E-10 4.1E-15 133.6 6.7 55 1368-1422 219-274 (275)
52 KOG1827|consensus 99.0 2E-10 4.3E-15 141.6 5.9 125 584-758 184-308 (629)
53 PRK10458 DNA cytosine methylas 98.9 9.6E-10 2.1E-14 135.1 5.6 60 792-852 85-147 (467)
54 KOG3554|consensus 98.3 9.4E-08 2E-12 111.3 0.1 109 647-763 20-170 (693)
55 KOG3554|consensus 96.4 0.00076 1.7E-08 79.7 -0.2 112 411-536 4-161 (693)
56 KOG0919|consensus 96.0 0.0026 5.6E-08 70.6 1.3 62 794-855 2-64 (338)
57 PF13659 Methyltransf_26: Meth 96.0 0.0078 1.7E-07 60.4 4.5 77 887-978 2-84 (117)
58 PF09445 Methyltransf_15: RNA 95.9 0.01 2.2E-07 64.0 5.2 79 888-981 2-86 (163)
59 PF03602 Cons_hypoth95: Conser 95.5 0.0074 1.6E-07 66.5 2.3 76 885-973 42-123 (183)
60 COG2263 Predicted RNA methylas 95.4 0.012 2.5E-07 64.3 3.3 68 887-974 47-118 (198)
61 PF02475 Met_10: Met-10+ like- 95.2 0.014 3.1E-07 65.1 3.3 57 797-853 104-166 (200)
62 TIGR00095 RNA methyltransferas 95.0 0.025 5.5E-07 62.6 4.5 75 886-973 50-130 (189)
63 COG2520 Predicted methyltransf 94.9 0.026 5.6E-07 67.6 4.6 57 796-853 190-252 (341)
64 TIGR03704 PrmC_rel_meth putati 94.8 0.017 3.8E-07 66.7 2.9 82 886-981 87-170 (251)
65 COG0742 N6-adenine-specific me 94.8 0.039 8.4E-07 60.7 5.2 77 885-975 43-125 (187)
66 TIGR00095 RNA methyltransferas 94.7 0.03 6.4E-07 62.1 4.1 59 794-853 49-113 (189)
67 PRK10909 rsmD 16S rRNA m(2)G96 94.6 0.067 1.5E-06 59.8 6.8 71 887-973 55-130 (199)
68 TIGR02085 meth_trns_rumB 23S r 94.6 0.052 1.1E-06 66.5 6.3 69 888-973 236-309 (374)
69 PRK11783 rlmL 23S rRNA m(2)G24 94.6 0.21 4.5E-06 66.1 12.3 77 886-978 539-622 (702)
70 KOG3420|consensus 94.5 0.027 5.8E-07 58.8 3.0 72 885-973 48-123 (185)
71 COG2520 Predicted methyltransf 94.5 0.05 1.1E-06 65.2 5.8 57 886-943 189-251 (341)
72 PF02475 Met_10: Met-10+ like- 94.5 0.027 5.8E-07 63.0 3.3 71 886-973 102-178 (200)
73 PHA03411 putative methyltransf 94.5 0.036 7.9E-07 64.5 4.3 75 887-978 66-140 (279)
74 PF03602 Cons_hypoth95: Conser 94.4 0.031 6.7E-07 61.6 3.4 62 793-855 41-108 (183)
75 PRK03522 rumB 23S rRNA methylu 94.2 0.091 2E-06 62.8 7.1 73 887-976 175-252 (315)
76 PHA03412 putative methyltransf 94.2 0.029 6.3E-07 63.9 2.6 71 886-974 50-124 (241)
77 PRK15128 23S rRNA m(5)C1962 me 94.0 0.058 1.3E-06 66.4 5.0 76 886-974 221-303 (396)
78 COG2263 Predicted RNA methylas 93.5 0.061 1.3E-06 58.9 3.4 54 797-851 48-105 (198)
79 TIGR00479 rumA 23S rRNA (uraci 93.5 0.11 2.4E-06 64.8 6.2 94 887-1012 294-392 (431)
80 PF09445 Methyltransf_15: RNA 93.4 0.058 1.3E-06 58.3 3.0 55 797-853 2-62 (163)
81 COG0742 N6-adenine-specific me 93.1 0.1 2.3E-06 57.4 4.5 62 793-855 42-109 (187)
82 COG2265 TrmA SAM-dependent met 92.6 0.34 7.3E-06 60.4 8.7 115 886-1042 294-415 (432)
83 TIGR00308 TRM1 tRNA(guanine-26 92.5 0.11 2.3E-06 63.6 4.1 58 795-853 45-109 (374)
84 PF13659 Methyltransf_26: Meth 92.1 0.11 2.4E-06 52.1 3.0 56 796-852 2-63 (117)
85 PRK10909 rsmD 16S rRNA m(2)G96 92.1 0.16 3.5E-06 56.8 4.5 57 795-852 54-115 (199)
86 PF05175 MTS: Methyltransferas 91.5 0.13 2.9E-06 55.8 3.0 71 886-973 32-107 (170)
87 TIGR00446 nop2p NOL1/NOP2/sun 91.4 0.34 7.3E-06 56.6 6.4 81 886-982 72-158 (264)
88 PRK10901 16S rRNA methyltransf 91.3 0.36 7.8E-06 60.3 6.9 82 886-981 245-330 (427)
89 PRK13168 rumA 23S rRNA m(5)U19 90.7 0.44 9.5E-06 59.8 6.9 76 886-976 298-379 (443)
90 TIGR02085 meth_trns_rumB 23S r 90.5 0.25 5.3E-06 60.6 4.3 55 797-853 236-295 (374)
91 cd02440 AdoMet_MTases S-adenos 90.4 0.93 2E-05 42.6 7.4 74 888-977 1-79 (107)
92 PRK15128 23S rRNA m(5)C1962 me 90.4 0.28 6.1E-06 60.5 4.7 58 796-854 222-286 (396)
93 PRK05031 tRNA (uracil-5-)-meth 90.3 0.38 8.2E-06 58.8 5.6 83 888-973 209-297 (362)
94 PRK05031 tRNA (uracil-5-)-meth 90.1 0.28 6.2E-06 59.8 4.4 56 797-854 209-269 (362)
95 PRK04338 N(2),N(2)-dimethylgua 90.1 0.26 5.6E-06 60.6 4.0 57 796-853 59-121 (382)
96 TIGR03533 L3_gln_methyl protei 90.1 0.41 8.9E-06 56.5 5.5 78 886-980 122-205 (284)
97 smart00650 rADc Ribosomal RNA 90.0 0.29 6.2E-06 53.0 3.8 70 886-973 14-86 (169)
98 PRK14904 16S rRNA methyltransf 89.8 0.93 2E-05 57.0 8.7 80 886-982 251-336 (445)
99 TIGR00537 hemK_rel_arch HemK-r 89.8 0.27 5.8E-06 53.7 3.5 74 886-979 20-97 (179)
100 PRK04338 N(2),N(2)-dimethylgua 89.8 0.31 6.7E-06 59.9 4.3 70 887-973 59-134 (382)
101 PRK14901 16S rRNA methyltransf 89.5 0.67 1.5E-05 58.0 7.1 84 886-982 253-343 (434)
102 PF05958 tRNA_U5-meth_tr: tRNA 89.3 0.27 5.8E-06 59.8 3.3 83 888-973 199-287 (352)
103 PHA03411 putative methyltransf 89.2 0.41 8.8E-06 56.0 4.5 57 796-852 66-122 (279)
104 COG4123 Predicted O-methyltran 88.9 0.41 8.8E-06 55.2 4.1 73 886-973 45-124 (248)
105 PRK11783 rlmL 23S rRNA m(2)G24 88.7 0.39 8.5E-06 63.6 4.4 56 797-853 541-603 (702)
106 PRK14902 16S rRNA methyltransf 88.6 0.65 1.4E-05 58.3 6.1 81 887-982 252-338 (444)
107 TIGR00308 TRM1 tRNA(guanine-26 88.3 0.39 8.4E-06 58.8 3.8 72 886-973 45-123 (374)
108 TIGR02143 trmA_only tRNA (urac 88.1 0.48 1E-05 57.7 4.3 55 797-853 200-259 (353)
109 PRK03522 rumB 23S rRNA methylu 87.4 0.57 1.2E-05 56.1 4.3 55 796-852 175-234 (315)
110 KOG3420|consensus 86.9 0.39 8.5E-06 50.4 2.2 45 795-840 49-93 (185)
111 KOG1227|consensus 86.7 0.44 9.6E-06 55.5 2.7 41 797-838 197-238 (351)
112 COG2265 TrmA SAM-dependent met 86.0 0.91 2E-05 56.7 5.1 60 794-855 293-357 (432)
113 TIGR01177 conserved hypothetic 86.0 1.3 2.8E-05 53.4 6.4 76 885-979 182-263 (329)
114 TIGR00536 hemK_fam HemK family 85.9 1.3 2.7E-05 52.4 6.1 77 887-980 116-198 (284)
115 COG2890 HemK Methylase of poly 85.9 0.43 9.3E-06 56.3 2.2 78 888-978 113-190 (280)
116 TIGR02143 trmA_only tRNA (urac 85.4 0.84 1.8E-05 55.6 4.4 55 888-944 200-259 (353)
117 PRK14967 putative methyltransf 85.0 0.8 1.7E-05 51.9 3.7 75 886-978 37-115 (223)
118 PRK11805 N5-glutamine S-adenos 84.5 0.89 1.9E-05 54.3 4.0 76 887-979 135-216 (307)
119 TIGR00479 rumA 23S rRNA (uraci 84.2 0.95 2E-05 56.6 4.2 56 796-853 294-354 (431)
120 PRK09328 N5-glutamine S-adenos 83.7 0.71 1.5E-05 53.7 2.7 78 885-979 108-190 (275)
121 smart00650 rADc Ribosomal RNA 83.7 1 2.2E-05 48.8 3.7 54 796-851 15-71 (169)
122 KOG2730|consensus 83.7 1.1 2.5E-05 50.2 4.0 80 888-981 97-182 (263)
123 TIGR00563 rsmB ribosomal RNA s 83.6 1.6 3.4E-05 54.6 5.8 88 886-982 239-327 (426)
124 TIGR03704 PrmC_rel_meth putati 83.1 0.91 2E-05 52.7 3.2 54 795-848 87-142 (251)
125 PF13847 Methyltransf_31: Meth 83.0 0.92 2E-05 48.0 3.0 75 885-974 3-83 (152)
126 PF02005 TRM: N2,N2-dimethylgu 82.9 0.64 1.4E-05 57.0 1.9 59 794-853 49-116 (377)
127 PF05958 tRNA_U5-meth_tr: tRNA 82.7 1.1 2.3E-05 54.8 3.7 53 797-851 199-256 (352)
128 PHA03412 putative methyltransf 82.5 0.99 2.2E-05 51.8 3.1 56 795-850 50-108 (241)
129 KOG1227|consensus 81.3 0.98 2.1E-05 52.7 2.5 41 888-929 197-238 (351)
130 PRK07402 precorrin-6B methylas 80.8 1.8 4E-05 47.9 4.4 57 795-851 41-102 (196)
131 PRK14903 16S rRNA methyltransf 80.6 3.6 7.8E-05 51.6 7.3 82 886-982 238-325 (431)
132 PF10672 Methyltrans_SAM: S-ad 80.0 1.3 2.8E-05 52.4 3.0 77 886-978 124-207 (286)
133 PRK13168 rumA 23S rRNA m(5)U19 78.7 1.9 4.1E-05 54.2 4.1 55 796-852 299-358 (443)
134 PRK14966 unknown domain/N5-glu 78.6 1.4 3E-05 54.6 2.7 72 887-973 253-328 (423)
135 TIGR03534 RF_mod_PrmC protein- 78.3 1.3 2.8E-05 50.6 2.3 78 886-980 88-170 (251)
136 PF13847 Methyltransf_31: Meth 77.7 2.7 5.9E-05 44.5 4.4 58 794-851 3-66 (152)
137 PRK00274 ksgA 16S ribosomal RN 77.1 1.6 3.4E-05 51.3 2.5 70 886-973 43-114 (272)
138 PRK14896 ksgA 16S ribosomal RN 75.7 2.1 4.5E-05 49.9 3.0 68 886-973 30-100 (258)
139 PF01170 UPF0020: Putative RNA 75.0 1.7 3.7E-05 47.8 2.0 108 886-1012 29-147 (179)
140 PRK09489 rsmC 16S ribosomal RN 74.2 2.8 6.2E-05 50.9 3.8 68 888-973 199-270 (342)
141 PF12847 Methyltransf_18: Meth 74.1 2.4 5.3E-05 41.9 2.7 68 887-972 3-78 (112)
142 PF05175 MTS: Methyltransferas 74.1 2.8 6E-05 45.6 3.4 45 794-838 31-75 (170)
143 cd02440 AdoMet_MTases S-adenos 73.6 4.9 0.00011 37.6 4.6 38 797-835 1-38 (107)
144 TIGR00755 ksgA dimethyladenosi 73.1 2.5 5.4E-05 49.0 2.9 52 886-939 30-84 (253)
145 COG1092 Predicted SAM-dependen 73.1 3.5 7.6E-05 50.8 4.2 79 886-979 218-303 (393)
146 PRK15001 SAM-dependent 23S rib 72.5 2.4 5.2E-05 52.1 2.6 42 888-929 231-272 (378)
147 KOG2904|consensus 72.5 4 8.8E-05 47.4 4.2 78 886-974 149-232 (328)
148 PRK03612 spermidine synthase; 72.3 28 0.00061 44.8 12.3 74 886-974 298-383 (521)
149 TIGR00446 nop2p NOL1/NOP2/sun 71.5 3.6 7.9E-05 48.1 3.7 56 796-851 73-134 (264)
150 PRK01683 trans-aconitate 2-met 71.4 10 0.00023 43.7 7.5 74 885-975 31-104 (258)
151 PF12847 Methyltransf_18: Meth 71.3 4.4 9.5E-05 40.1 3.8 51 796-848 3-61 (112)
152 PF10672 Methyltrans_SAM: S-ad 69.7 5 0.00011 47.5 4.3 59 796-855 125-190 (286)
153 PRK00121 trmB tRNA (guanine-N( 69.4 8.4 0.00018 43.1 5.9 76 886-975 41-122 (202)
154 PRK01581 speE spermidine synth 68.8 1E+02 0.0022 38.1 15.0 73 886-973 151-235 (374)
155 PRK14967 putative methyltransf 68.6 4.3 9.4E-05 46.0 3.4 54 796-850 38-95 (223)
156 PRK00274 ksgA 16S ribosomal RN 68.2 4.4 9.5E-05 47.6 3.5 56 794-851 42-99 (272)
157 TIGR00138 gidB 16S rRNA methyl 67.7 6.6 0.00014 43.3 4.5 69 886-971 43-116 (181)
158 PRK01544 bifunctional N5-gluta 67.6 4.8 0.0001 51.6 3.9 75 886-978 139-220 (506)
159 PRK14968 putative methyltransf 67.0 4.5 9.7E-05 43.9 3.1 72 886-976 24-102 (188)
160 PRK00377 cbiT cobalt-precorrin 67.0 6.9 0.00015 43.6 4.6 58 794-851 40-104 (198)
161 PRK08287 cobalt-precorrin-6Y C 66.5 5.9 0.00013 43.6 3.9 45 885-929 31-75 (187)
162 KOG2187|consensus 65.8 10 0.00022 47.8 6.0 41 886-928 384-424 (534)
163 TIGR00755 ksgA dimethyladenosi 65.5 5.5 0.00012 46.2 3.5 56 794-851 29-87 (253)
164 PRK00121 trmB tRNA (guanine-N( 65.3 6 0.00013 44.3 3.7 58 794-851 40-103 (202)
165 PTZ00338 dimethyladenosine tra 65.2 6 0.00013 47.1 3.8 68 886-973 37-110 (294)
166 PLN02672 methionine S-methyltr 64.0 5 0.00011 55.3 3.2 44 886-929 119-162 (1082)
167 COG1867 TRM1 N2,N2-dimethylgua 63.3 8.4 0.00018 46.7 4.5 59 795-854 53-117 (380)
168 PRK10901 16S rRNA methyltransf 63.2 4.7 0.0001 50.5 2.6 56 795-850 245-304 (427)
169 PRK07402 precorrin-6B methylas 63.2 5.2 0.00011 44.4 2.7 56 885-940 40-100 (196)
170 PF06325 PrmA: Ribosomal prote 62.6 5.3 0.00012 47.5 2.8 42 796-838 163-204 (295)
171 TIGR03533 L3_gln_methyl protei 62.4 6.6 0.00014 46.5 3.5 43 796-838 123-165 (284)
172 TIGR03587 Pse_Me-ase pseudamin 61.9 8 0.00017 43.5 3.9 54 795-849 44-98 (204)
173 TIGR00138 gidB 16S rRNA methyl 61.9 9.5 0.00021 42.1 4.4 57 795-851 43-104 (181)
174 TIGR01177 conserved hypothetic 61.8 7 0.00015 47.2 3.6 56 794-851 182-242 (329)
175 PRK00377 cbiT cobalt-precorrin 61.8 8.5 0.00018 42.8 4.0 44 885-928 40-84 (198)
176 TIGR02987 met_A_Alw26 type II 61.4 4.2 9.2E-05 52.2 1.8 87 885-978 31-126 (524)
177 PRK10258 biotin biosynthesis p 61.4 17 0.00038 41.7 6.6 69 886-972 43-111 (251)
178 TIGR00537 hemK_rel_arch HemK-r 61.3 6.9 0.00015 42.7 3.2 41 796-838 21-61 (179)
179 TIGR02469 CbiT precorrin-6Y C5 61.3 10 0.00022 37.9 4.2 42 796-837 21-62 (124)
180 COG2264 PrmA Ribosomal protein 61.0 7.8 0.00017 46.1 3.7 44 885-929 162-205 (300)
181 TIGR00406 prmA ribosomal prote 60.8 6.3 0.00014 46.7 2.9 43 795-838 160-202 (288)
182 TIGR03587 Pse_Me-ase pseudamin 60.7 7.8 0.00017 43.6 3.5 52 886-938 44-96 (204)
183 COG2890 HemK Methylase of poly 60.6 6.1 0.00013 46.7 2.8 42 797-838 113-154 (280)
184 TIGR00080 pimt protein-L-isoas 60.4 7.9 0.00017 43.7 3.5 45 885-929 77-122 (215)
185 PRK08287 cobalt-precorrin-6Y C 59.9 7.4 0.00016 42.8 3.1 45 794-838 31-75 (187)
186 PF02086 MethyltransfD12: D12 59.8 7.1 0.00015 44.9 3.1 40 794-835 20-59 (260)
187 KOG2730|consensus 58.7 9.5 0.00021 43.2 3.6 60 794-855 94-159 (263)
188 COG1092 Predicted SAM-dependen 58.6 9.1 0.0002 47.3 3.8 60 797-857 220-286 (393)
189 COG0144 Sun tRNA and rRNA cyto 58.5 20 0.00043 44.0 6.7 84 886-982 157-247 (355)
190 PRK11933 yebU rRNA (cytosine-C 58.4 11 0.00024 47.8 4.6 82 886-982 114-201 (470)
191 PRK14896 ksgA 16S ribosomal RN 58.2 9.2 0.0002 44.6 3.7 55 795-851 30-87 (258)
192 PRK01683 trans-aconitate 2-met 58.1 12 0.00026 43.2 4.6 58 794-851 31-88 (258)
193 COG4123 Predicted O-methyltran 57.2 11 0.00024 43.7 4.0 69 787-855 37-111 (248)
194 PRK00517 prmA ribosomal protei 57.0 8.3 0.00018 44.7 3.0 44 794-838 119-162 (250)
195 TIGR02021 BchM-ChlM magnesium 56.7 11 0.00023 42.5 3.8 44 794-839 55-98 (219)
196 COG2264 PrmA Ribosomal protein 56.7 8.8 0.00019 45.7 3.2 45 793-838 161-205 (300)
197 PRK11207 tellurite resistance 56.2 11 0.00024 42.0 3.8 43 885-929 30-72 (197)
198 PRK10742 putative methyltransf 55.1 11 0.00023 43.9 3.4 43 886-930 89-131 (250)
199 PRK09328 N5-glutamine S-adenos 54.9 9.7 0.00021 44.2 3.2 45 794-838 108-152 (275)
200 PLN02396 hexaprenyldihydroxybe 54.3 14 0.0003 44.7 4.4 42 885-928 131-172 (322)
201 KOG2078|consensus 54.2 12 0.00025 46.1 3.6 55 797-853 252-313 (495)
202 TIGR02021 BchM-ChlM magnesium 53.8 12 0.00026 42.2 3.5 44 885-930 55-98 (219)
203 PRK11727 23S rRNA mA1618 methy 53.5 13 0.00028 44.9 3.9 43 885-929 114-158 (321)
204 PRK11805 N5-glutamine S-adenos 52.9 9.9 0.00022 45.5 2.9 43 796-838 135-177 (307)
205 PRK10258 biotin biosynthesis p 52.5 15 0.00032 42.3 4.1 54 795-850 43-96 (251)
206 TIGR02752 MenG_heptapren 2-hep 52.3 32 0.00069 38.9 6.7 44 886-929 46-90 (231)
207 PRK14901 16S rRNA methyltransf 52.2 12 0.00027 46.9 3.7 56 796-851 254-315 (434)
208 PRK14902 16S rRNA methyltransf 52.1 10 0.00023 47.7 3.0 56 796-851 252-313 (444)
209 PF00398 RrnaAD: Ribosomal RNA 51.8 16 0.00035 42.7 4.3 56 794-851 30-88 (262)
210 TIGR00478 tly hemolysin TlyA f 51.4 16 0.00036 41.9 4.2 37 795-832 76-112 (228)
211 COG2227 UbiG 2-polyprenyl-3-me 51.0 20 0.00043 41.4 4.6 44 885-930 59-102 (243)
212 TIGR00536 hemK_fam HemK family 50.6 11 0.00025 44.4 2.8 43 796-838 116-158 (284)
213 TIGR02072 BioC biotin biosynth 50.1 34 0.00073 38.4 6.5 74 886-975 35-109 (240)
214 PRK10742 putative methyltransf 49.9 16 0.00035 42.4 3.8 42 795-838 89-130 (250)
215 PF13649 Methyltransf_25: Meth 49.4 10 0.00023 37.1 1.9 66 889-970 1-73 (101)
216 PF02005 TRM: N2,N2-dimethylgu 48.9 7.3 0.00016 48.0 0.9 58 885-943 49-115 (377)
217 COG2242 CobL Precorrin-6B meth 48.8 24 0.00052 39.3 4.7 58 796-853 36-98 (187)
218 KOG2133|consensus 48.5 13 0.00027 49.4 2.9 125 585-757 140-284 (1229)
219 PRK14904 16S rRNA methyltransf 48.3 14 0.0003 46.6 3.2 55 796-850 252-312 (445)
220 PF13649 Methyltransf_25: Meth 48.2 19 0.00042 35.2 3.6 55 798-852 1-62 (101)
221 PRK09489 rsmC 16S ribosomal RN 47.5 20 0.00044 43.6 4.4 42 797-838 199-240 (342)
222 KOG2904|consensus 47.2 17 0.00038 42.4 3.5 44 795-838 149-192 (328)
223 COG3963 Phospholipid N-methylt 47.1 42 0.0009 36.9 6.0 86 885-981 48-134 (194)
224 PRK11036 putative S-adenosyl-L 46.9 26 0.00056 40.6 5.0 56 794-851 44-105 (255)
225 PF10383 Clr2: Transcription-s 46.8 2E+02 0.0043 30.7 11.1 25 579-603 1-25 (139)
226 PLN02336 phosphoethanolamine N 46.7 40 0.00088 42.7 7.1 75 887-978 39-117 (475)
227 PLN02396 hexaprenyldihydroxybe 46.4 25 0.00054 42.6 4.8 42 795-838 132-173 (322)
228 PRK11036 putative S-adenosyl-L 46.1 24 0.00052 40.9 4.5 56 885-942 44-105 (255)
229 KOG1500|consensus 45.9 25 0.00054 42.0 4.5 103 885-1013 177-279 (517)
230 TIGR00091 tRNA (guanine-N(7)-) 45.8 22 0.00048 39.5 4.0 78 886-976 17-99 (194)
231 PF06325 PrmA: Ribosomal prote 45.7 8.3 0.00018 45.9 0.7 43 886-929 162-204 (295)
232 PRK14968 putative methyltransf 45.5 18 0.00038 39.3 3.1 42 795-838 24-65 (188)
233 PLN02781 Probable caffeoyl-CoA 44.8 68 0.0015 36.9 7.9 77 885-972 68-152 (234)
234 TIGR00406 prmA ribosomal prote 44.7 11 0.00024 44.6 1.6 43 886-929 160-202 (288)
235 PLN02585 magnesium protoporphy 43.9 19 0.00042 43.3 3.4 44 885-930 144-187 (315)
236 PRK14903 16S rRNA methyltransf 43.9 21 0.00046 44.9 3.9 56 796-851 239-300 (431)
237 PF00398 RrnaAD: Ribosomal RNA 43.7 14 0.00031 43.0 2.3 74 885-973 30-106 (262)
238 PRK00107 gidB 16S rRNA methylt 43.6 30 0.00065 38.5 4.6 43 886-928 46-88 (187)
239 PRK07580 Mg-protoporphyrin IX 43.6 21 0.00045 40.3 3.4 43 794-838 63-105 (230)
240 PRK05785 hypothetical protein; 43.6 54 0.0012 37.5 6.8 93 886-1014 52-145 (226)
241 PF02086 MethyltransfD12: D12 43.3 13 0.00028 42.8 1.7 40 886-927 21-60 (260)
242 PTZ00338 dimethyladenosine tra 43.3 23 0.00049 42.3 3.8 56 794-851 36-97 (294)
243 PRK06922 hypothetical protein; 43.2 23 0.0005 46.4 4.1 77 885-975 418-498 (677)
244 TIGR02752 MenG_heptapren 2-hep 43.0 20 0.00044 40.5 3.3 55 795-849 46-106 (231)
245 TIGR03534 RF_mod_PrmC protein- 42.8 18 0.00039 41.3 2.8 44 795-838 88-131 (251)
246 PF10383 Clr2: Transcription-s 42.1 75 0.0016 33.8 7.1 41 402-442 2-52 (139)
247 PRK04266 fibrillarin; Provisio 42.1 33 0.00071 39.4 4.7 54 795-848 73-129 (226)
248 PF01170 UPF0020: Putative RNA 41.8 12 0.00025 41.3 1.0 45 794-838 28-81 (179)
249 KOG2078|consensus 41.6 25 0.00053 43.5 3.7 55 887-943 251-312 (495)
250 PRK03612 spermidine synthase; 41.4 39 0.00084 43.6 5.8 59 795-853 298-368 (521)
251 PF05185 PRMT5: PRMT5 arginine 41.0 12 0.00027 47.1 1.2 58 885-942 186-253 (448)
252 PF02384 N6_Mtase: N-6 DNA Met 40.9 18 0.00039 43.0 2.5 43 886-928 47-96 (311)
253 PRK00811 spermidine synthase; 40.8 42 0.00091 39.8 5.5 71 886-972 77-158 (283)
254 PRK00517 prmA ribosomal protei 40.8 14 0.0003 42.8 1.5 44 885-929 119-162 (250)
255 COG3897 Predicted methyltransf 40.7 12 0.00026 41.8 0.9 81 885-981 79-159 (218)
256 PRK00811 spermidine synthase; 40.5 41 0.00088 39.9 5.4 58 795-853 77-145 (283)
257 PRK14966 unknown domain/N5-glu 40.4 21 0.00045 44.6 3.0 42 797-838 254-295 (423)
258 PRK04148 hypothetical protein; 40.3 41 0.00089 35.6 4.7 51 795-849 17-68 (134)
259 TIGR00477 tehB tellurite resis 40.3 67 0.0015 35.7 6.8 41 886-928 31-71 (195)
260 PLN02585 magnesium protoporphy 39.9 29 0.00063 41.8 4.1 43 795-839 145-187 (315)
261 PRK15001 SAM-dependent 23S rib 39.8 23 0.0005 43.7 3.2 43 796-838 230-272 (378)
262 PRK14103 trans-aconitate 2-met 39.5 65 0.0014 37.3 6.7 99 886-1018 30-128 (255)
263 TIGR01934 MenG_MenH_UbiE ubiqu 39.3 34 0.00073 38.0 4.3 56 794-849 39-98 (223)
264 KOG3191|consensus 38.7 48 0.0011 36.8 5.0 75 887-978 45-124 (209)
265 TIGR01934 MenG_MenH_UbiE ubiqu 38.6 36 0.00078 37.8 4.3 46 885-930 39-85 (223)
266 PRK06202 hypothetical protein; 38.5 36 0.00077 38.8 4.4 45 885-929 60-108 (232)
267 KOG1633|consensus 38.3 17 0.00037 48.5 1.9 47 302-349 528-574 (776)
268 TIGR02072 BioC biotin biosynth 37.7 36 0.00078 38.2 4.2 56 795-850 35-91 (240)
269 PRK12335 tellurite resistance 37.6 25 0.00055 41.5 3.1 39 888-928 123-161 (287)
270 TIGR00417 speE spermidine synt 37.6 44 0.00095 39.2 5.0 71 888-973 75-154 (270)
271 PRK11207 tellurite resistance 37.5 34 0.00075 38.1 3.9 42 795-838 31-72 (197)
272 TIGR03840 TMPT_Se_Te thiopurin 37.3 32 0.0007 39.0 3.7 38 795-834 35-72 (213)
273 PRK11188 rrmJ 23S rRNA methylt 37.1 22 0.00048 40.1 2.3 50 796-851 53-103 (209)
274 TIGR00080 pimt protein-L-isoas 36.5 34 0.00074 38.5 3.8 45 794-838 77-122 (215)
275 PRK11188 rrmJ 23S rRNA methylt 36.0 24 0.00051 39.9 2.3 71 886-972 52-125 (209)
276 TIGR00417 speE spermidine synt 35.8 56 0.0012 38.3 5.5 57 797-853 75-140 (270)
277 TIGR02469 CbiT precorrin-6Y C5 35.8 25 0.00053 35.1 2.2 43 886-928 20-62 (124)
278 TIGR00478 tly hemolysin TlyA f 35.7 27 0.00058 40.2 2.7 47 885-932 75-121 (228)
279 PRK00312 pcm protein-L-isoaspa 35.4 27 0.00058 39.2 2.6 44 885-930 78-121 (212)
280 TIGR00563 rsmB ribosomal RNA s 34.7 29 0.00063 43.5 3.1 42 796-838 240-282 (426)
281 PRK15068 tRNA mo(5)U34 methylt 34.5 31 0.00067 41.7 3.2 37 886-923 123-159 (322)
282 PRK04266 fibrillarin; Provisio 34.5 32 0.0007 39.4 3.2 55 885-939 72-129 (226)
283 COG2521 Predicted archaeal met 34.3 47 0.001 38.2 4.2 131 885-1042 134-272 (287)
284 PRK06202 hypothetical protein; 34.2 47 0.001 37.8 4.4 46 793-838 59-108 (232)
285 PF01189 Nol1_Nop2_Fmu: NOL1/N 34.1 42 0.00091 39.8 4.1 83 886-982 86-174 (283)
286 PF01555 N6_N4_Mtase: DNA meth 33.9 32 0.00069 38.2 3.0 41 792-834 189-229 (231)
287 COG2242 CobL Precorrin-6B meth 33.4 53 0.0011 36.7 4.4 56 887-942 36-96 (187)
288 COG1867 TRM1 N2,N2-dimethylgua 32.8 54 0.0012 40.1 4.7 57 886-944 53-116 (380)
289 PLN02244 tocopherol O-methyltr 32.3 40 0.00086 41.0 3.6 43 794-837 118-160 (340)
290 TIGR00091 tRNA (guanine-N(7)-) 32.3 54 0.0012 36.4 4.4 59 795-853 17-80 (194)
291 PRK00107 gidB 16S rRNA methylt 31.9 43 0.00094 37.3 3.5 56 795-850 46-106 (187)
292 PLN02233 ubiquinone biosynthes 31.6 45 0.00098 39.0 3.8 43 795-837 74-117 (261)
293 PRK13944 protein-L-isoaspartat 31.5 32 0.00069 38.6 2.4 44 886-929 73-117 (205)
294 PRK01544 bifunctional N5-gluta 31.0 37 0.00079 43.7 3.1 55 795-849 139-199 (506)
295 PRK00216 ubiE ubiquinone/menaq 30.8 44 0.00096 37.5 3.5 46 885-930 51-97 (239)
296 COG5076 Transcription factor i 30.6 7.9 0.00017 47.6 -2.8 95 582-725 268-362 (371)
297 PLN02233 ubiquinone biosynthes 30.1 45 0.00098 39.0 3.4 44 885-928 73-117 (261)
298 PRK15068 tRNA mo(5)U34 methylt 29.3 52 0.0011 39.7 3.9 36 796-832 124-159 (322)
299 PRK13255 thiopurine S-methyltr 29.1 50 0.0011 37.7 3.5 38 796-835 39-76 (218)
300 PRK07580 Mg-protoporphyrin IX 28.7 37 0.00081 38.2 2.4 44 885-930 63-106 (230)
301 PLN02244 tocopherol O-methyltr 28.5 48 0.001 40.3 3.4 42 885-928 118-160 (340)
302 PRK04148 hypothetical protein; 28.2 52 0.0011 34.9 3.1 50 886-939 17-67 (134)
303 TIGR02987 met_A_Alw26 type II 28.1 35 0.00077 43.9 2.3 45 794-838 31-83 (524)
304 PRK11088 rrmA 23S rRNA methylt 28.1 44 0.00096 39.1 2.9 52 887-938 87-141 (272)
305 PRK08317 hypothetical protein; 28.0 64 0.0014 36.0 4.1 44 885-928 19-63 (241)
306 TIGR01983 UbiG ubiquinone bios 27.9 67 0.0014 36.0 4.2 43 885-929 45-87 (224)
307 PRK15451 tRNA cmo(5)U34 methyl 27.9 69 0.0015 37.0 4.4 42 886-929 57-102 (247)
308 PRK05134 bifunctional 3-demeth 27.7 78 0.0017 35.9 4.8 43 885-929 48-90 (233)
309 KOG1270|consensus 27.7 58 0.0013 38.2 3.6 40 796-837 91-130 (282)
310 PF05185 PRMT5: PRMT5 arginine 27.6 58 0.0013 41.2 4.0 58 794-851 186-253 (448)
311 PRK00216 ubiE ubiquinone/menaq 27.6 60 0.0013 36.5 3.8 46 794-839 51-97 (239)
312 PRK08317 hypothetical protein; 27.4 69 0.0015 35.8 4.3 44 794-837 19-63 (241)
313 PRK00050 16S rRNA m(4)C1402 me 27.3 90 0.0019 37.4 5.3 58 886-943 20-81 (296)
314 COG2226 UbiE Methylase involve 27.3 1E+02 0.0022 35.9 5.5 100 885-1014 51-156 (238)
315 TIGR02081 metW methionine bios 27.3 72 0.0016 35.3 4.3 51 796-849 15-65 (194)
316 PTZ00098 phosphoethanolamine N 27.2 1.2E+02 0.0027 35.4 6.4 44 885-930 52-96 (263)
317 PRK06922 hypothetical protein; 27.1 61 0.0013 42.7 4.1 56 795-850 419-478 (677)
318 TIGR01444 fkbM_fam methyltrans 26.5 46 0.001 34.5 2.5 42 797-838 1-42 (143)
319 COG0030 KsgA Dimethyladenosine 26.2 57 0.0012 38.3 3.3 52 886-939 31-85 (259)
320 PF01728 FtsJ: FtsJ-like methy 26.0 41 0.0009 36.6 2.1 49 794-848 23-72 (181)
321 PRK00050 16S rRNA m(4)C1402 me 26.0 83 0.0018 37.7 4.7 60 794-853 19-82 (296)
322 PTZ00112 origin recognition co 25.9 1.1E+02 0.0024 41.8 6.0 152 577-757 439-611 (1164)
323 TIGR01983 UbiG ubiquinone bios 25.8 74 0.0016 35.7 4.1 43 794-838 45-87 (224)
324 PRK11088 rrmA 23S rRNA methylt 25.8 71 0.0015 37.4 4.1 57 794-850 85-144 (272)
325 TIGR00452 methyltransferase, p 25.7 59 0.0013 39.2 3.5 38 886-924 122-159 (314)
326 TIGR03840 TMPT_Se_Te thiopurin 25.6 57 0.0012 37.0 3.2 40 885-926 34-73 (213)
327 PF13489 Methyltransf_23: Meth 25.5 66 0.0014 33.6 3.5 40 792-833 20-59 (161)
328 COG1041 Predicted DNA modifica 25.4 49 0.0011 40.2 2.7 98 887-1004 199-297 (347)
329 PF09926 DUF2158: Uncharacteri 25.3 75 0.0016 28.4 3.1 41 413-459 1-41 (53)
330 PF02384 N6_Mtase: N-6 DNA Met 25.2 50 0.0011 39.3 2.7 46 792-837 44-96 (311)
331 COG5475 Uncharacterized small 24.8 2E+02 0.0042 26.0 5.4 38 411-459 3-40 (60)
332 PF01555 N6_N4_Mtase: DNA meth 24.7 31 0.00067 38.3 0.8 36 888-925 194-229 (231)
333 COG0030 KsgA Dimethyladenosine 24.5 71 0.0015 37.5 3.6 55 795-851 31-88 (259)
334 PRK13942 protein-L-isoaspartat 24.3 77 0.0017 35.8 3.8 45 885-929 76-121 (212)
335 PRK13944 protein-L-isoaspartat 24.2 54 0.0012 36.8 2.6 44 795-838 73-117 (205)
336 PRK11727 23S rRNA mA1618 methy 23.9 72 0.0016 38.7 3.7 45 794-838 114-158 (321)
337 PLN02781 Probable caffeoyl-CoA 23.8 91 0.002 35.9 4.4 63 793-855 67-136 (234)
338 PRK05134 bifunctional 3-demeth 23.7 79 0.0017 35.8 3.9 43 794-838 48-90 (233)
339 COG2227 UbiG 2-polyprenyl-3-me 23.6 70 0.0015 37.1 3.3 48 793-842 58-105 (243)
340 TIGR02081 metW methionine bios 23.2 75 0.0016 35.1 3.5 73 886-975 14-86 (194)
341 COG2813 RsmC 16S RNA G1207 met 22.3 72 0.0016 38.2 3.2 68 888-973 161-233 (300)
342 TIGR00452 methyltransferase, p 22.2 91 0.002 37.7 4.1 37 795-832 122-158 (314)
343 PRK15451 tRNA cmo(5)U34 methyl 22.0 80 0.0017 36.5 3.5 55 796-850 58-120 (247)
344 PRK11933 yebU rRNA (cytosine-C 21.8 84 0.0018 40.1 3.9 58 794-851 113-176 (470)
345 TIGR00477 tehB tellurite resis 21.5 90 0.0019 34.7 3.6 42 794-837 30-71 (195)
346 PF08241 Methyltransf_11: Meth 20.9 99 0.0021 28.9 3.3 51 799-850 1-53 (95)
347 PLN02823 spermine synthase 20.8 4.5E+02 0.0097 32.2 9.6 122 884-1035 102-239 (336)
348 PRK12335 tellurite resistance 20.7 80 0.0017 37.4 3.2 40 797-838 123-162 (287)
349 KOG1270|consensus 20.6 94 0.002 36.5 3.6 41 886-928 90-130 (282)
350 PRK13942 protein-L-isoaspartat 20.5 1.2E+02 0.0026 34.2 4.5 45 794-838 76-121 (212)
351 PF08241 Methyltransf_11: Meth 20.5 83 0.0018 29.4 2.7 43 890-933 1-43 (95)
352 PTZ00098 phosphoethanolamine N 20.3 1.3E+02 0.0028 35.2 4.8 45 793-839 51-96 (263)
353 TIGR00438 rrmJ cell division p 20.1 63 0.0014 35.5 2.1 70 881-974 28-108 (188)
354 PF03848 TehB: Tellurite resis 20.1 1E+02 0.0022 34.7 3.6 39 794-834 30-68 (192)
No 1
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.8e-57 Score=531.04 Aligned_cols=308 Identities=26% Similarity=0.448 Sum_probs=223.0
Q ss_pred eeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCcccEE
Q psy16462 889 CLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEML 968 (1522)
Q Consensus 889 ~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~vDvL 968 (1522)
++||||||||+|+||++||+ ++++|+|+|+.|++||++|||+ .++.+||.++.. ..+| ++|+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~------------~~~~---~~dvl 63 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFGN-KVPFGDITKISP------------SDIP---DFDIL 63 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhh------------hhCC---CcCEE
Confidence 58999999999999999997 9999999999999999999998 667788887631 1233 69999
Q ss_pred EeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEEecchhhhccchhHHHHHHHhhhhccccccccccc
Q psy16462 969 CGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQ 1048 (1522)
Q Consensus 969 ~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmENV~g~ls~~~~~~~~~~~~~l~~~gy~~~~~~l~ 1048 (1522)
+||||||+||.+|+. ++.+|.|+.|+++|+++|+.++|++|+||||+||++.+++
T Consensus 64 ~gg~PCq~fS~ag~~--~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~----------------------- 118 (315)
T TIGR00675 64 LGGFPCQPFSIAGKR--KGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKG----------------------- 118 (315)
T ss_pred EecCCCcccchhccc--CCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccc-----------------------
Confidence 999999999999974 3567899999999999999999999999999999875432
Q ss_pred CCCCCCCCCcccccccCCCCcccchhhhhhhccccccCCccceeccchhhhhhhhhHHHHHHHHHHHhCCceeEEEEEec
Q psy16462 1049 AGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1128 (1522)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~p~~~~lEnV~~~~~~~~~~~~~~il~~L~~lGY~v~~~vLnA 1128 (1522)
..|+.+++.|..+||++.+.+|||
T Consensus 119 --------------------------------------------------------~~~~~i~~~l~~~GY~v~~~~l~a 142 (315)
T TIGR00675 119 --------------------------------------------------------RTFKVIIETLEELGYKVYYKVLNA 142 (315)
T ss_pred --------------------------------------------------------hHHHHHHHHHHhCCCEEEEEEEcH
Confidence 345677888899999999999999
Q ss_pred CCCCCCCCCCEEEEEEec-CCCC-CCCCCCCCcccCCCccccccccccccccccccccCCCCCCcccHHHHhcCCCCCcC
Q psy16462 1129 GHFGVSQTRRRAIVLAAA-PGEV-LPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQN 1206 (1522)
Q Consensus 1129 ~~yGVPQ~R~RvfIVg~r-~g~~-lp~fP~PtH~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~vTv~dAI~DLp~~~~ 1206 (1522)
++|||||+|+|+|+||++ .+.. .+.||.|+|. ....+++|++..++....
T Consensus 143 ~dyGvPQ~R~R~f~ia~r~~~~~~~~~~p~~~~~----------------------------~~~~~l~d~~~~~~~~~~ 194 (315)
T TIGR00675 143 KDFGVPQNRERIYIVGFRDFDDKLNFEFPKPIYV----------------------------AKKKRIGDLLDLSVDLEE 194 (315)
T ss_pred HHCCCCCCccEEEEEEEeCCCcCcCCCCCCCccc----------------------------ccccchHHhcccccCcCC
Confidence 999999999999999998 4432 2457776651 011255665544332110
Q ss_pred CCCccccCcccccchHHHHHHhhccCCCcccccCccccCcHHHHHHHhcCCCCCCCCCCCCCchhhhccCCccccccccc
Q psy16462 1207 GCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYT 1286 (1522)
Q Consensus 1207 g~~~~~~~y~~~p~s~fq~~iR~~~~~~~~l~~h~~~~~~~~~~~Ri~~Ip~~~G~~~~dlp~~~v~l~~g~~~~~l~~~ 1286 (1522)
.| ..+....+++..++ ++..|.+.... . +
T Consensus 195 -------~~----------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~-------~----~--- 223 (315)
T TIGR00675 195 -------KY----------------------------YLSEEKKNGLLLLL--ENMRKKEGTGE-------Q----I--- 223 (315)
T ss_pred -------cE----------------------------EeCHHHHHHHHHHh--hcccccccccc-------c----c---
Confidence 00 01222344555444 23333320000 0 0
Q ss_pred cccccCCCCCCCcccccccccCCCCCCCCccccccccccCccCCCCCCCCCccccccceecc-----CCCcceeecCCCC
Q psy16462 1287 HNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQW-----NGFFSTTITNPEP 1361 (1522)
Q Consensus 1287 ~~d~k~g~~~~~~lrg~~~~~~~~g~~~~p~~~~~~~l~p~~~p~~~~r~~~~~~~YgRL~~-----d~~~sttiT~~~~ 1361 (1522)
.. ..+...|...+.++.| +.+.++..+.. .
T Consensus 224 -~~-------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~-~ 258 (315)
T TIGR00675 224 -GS-------------------------------------------FYNRESKSSIIRTLSARGYTFVKGGKSVLIVP-H 258 (315)
T ss_pred -ce-------------------------------------------eeccCCccceeeeeeccccccCCCCcceeecc-c
Confidence 00 0001112233444444 22212211111 1
Q ss_pred CCCCCccccCCCCccCcHHHHHHhcCCCCCcccccCHhhHhhheecccCHHHHHHHHHHH
Q psy16462 1362 MGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREI 1421 (1522)
Q Consensus 1362 ~~k~g~~iHP~q~R~LTvREaARLQgFPD~y~F~Gs~~~~yrQIGNAVPP~la~aIg~~I 1421 (1522)
.. ..+||.++|.||||||||||||||+|+|.|+.+++|+||||||||+||++||++|
T Consensus 259 --~~-~~~hp~~~R~lT~RE~aRLQ~FPd~f~f~~s~~~~~~qiGNAVPp~la~~I~~~i 315 (315)
T TIGR00675 259 --KS-TVVHPGRIRRLTPRECARLQGFPDDFKFPVSDSQLYKQAGNAVVVPVIEAIAKQI 315 (315)
T ss_pred --cc-eeccCCceeeCCHHHHHHHcCCCcccEeCCCHHHHHhhhCCcccHHHHHHHHhhC
Confidence 11 2389999999999999999999999999999999999999999999999999875
No 2
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=9.7e-58 Score=536.18 Aligned_cols=168 Identities=35% Similarity=0.721 Sum_probs=142.0
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCccc
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVE 966 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~vD 966 (1522)
++++||||||||+++||++||+ +++||+|+|+.|++||++||| .+..+||.++... .+|. ++|
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~------------~l~~--~~D 63 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANFP--EVICGDITEIDPS------------DLPK--DVD 63 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH------------HHHH--T-S
T ss_pred CcEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhccc--ccccccccccccc------------cccc--cce
Confidence 4799999999999999999996 999999999999999999999 7778888877432 3442 699
Q ss_pred EEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEEecchhhhccchhHHHHHHHhhhhccccccccc
Q psy16462 967 MLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGT 1046 (1522)
Q Consensus 967 vL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmENV~g~ls~~~~~~~~~~~~~l~~~gy~~~~~~ 1046 (1522)
||+||||||+||.||+ +++.+|.|+.|+++|+++|+.++|++||||||+||++.+++
T Consensus 64 ~l~ggpPCQ~fS~ag~--~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~--------------------- 120 (335)
T PF00145_consen 64 LLIGGPPCQGFSIAGK--RKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNG--------------------- 120 (335)
T ss_dssp EEEEE---TTTSTTST--HHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGH---------------------
T ss_pred EEEeccCCceEecccc--ccccccccchhhHHHHHHHhhccceEEEecccceeeccccc---------------------
Confidence 9999999999999997 35678999999999999999999999999999999986543
Q ss_pred ccCCCCCCCCCcccccccCCCCcccchhhhhhhccccccCCccceeccchhhhhhhhhHHHHHHHHHHHhCCceeEEEEE
Q psy16462 1047 LQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTL 1126 (1522)
Q Consensus 1047 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~p~~~~lEnV~~~~~~~~~~~~~~il~~L~~lGY~v~~~vL 1126 (1522)
..++.+++.|.++||+|.+.+|
T Consensus 121 ----------------------------------------------------------~~~~~i~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 121 ----------------------------------------------------------EVFKEILEELEELGYNVQWRVL 142 (335)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred ----------------------------------------------------------cccccccccccccceeehhccc
Confidence 4566788889999999999999
Q ss_pred ecCCCCCCCCCCEEEEEEecCCCCCC
Q psy16462 1127 QAGHFGVSQTRRRAIVLAAAPGEVLP 1152 (1522)
Q Consensus 1127 nA~~yGVPQ~R~RvfIVg~r~g~~lp 1152 (1522)
||++|||||+|+|+||||++++...+
T Consensus 143 na~~yGvPQ~R~R~fivg~r~~~~~~ 168 (335)
T PF00145_consen 143 NAADYGVPQNRERVFIVGIRKDLPLP 168 (335)
T ss_dssp EGGGGTSSBE-EEEEEEEEEGGG--T
T ss_pred cHhhCCCCCceeeEEEEEECCCCCcc
Confidence 99999999999999999999887654
No 3
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.2e-55 Score=513.13 Aligned_cols=323 Identities=30% Similarity=0.536 Sum_probs=235.5
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 964 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~ 964 (1522)
.+++++||||||||+++||+++|| ++++|+|+|+.|++||++|||...+...||.++.. ..++.. +
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf-~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~------------~~~~~~-~ 67 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF-EIVFANEIDPPAVATYKANFPHGDIILGDIKELDG------------EALRKS-D 67 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC-eEEEEEecCHHHHHHHHHhCCCCceeechHhhcCh------------hhcccc-C
Confidence 478999999999999999999996 99999999999999999999987777788877631 222211 8
Q ss_pred ccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEEecchhhhccchhHHHHHHHhhhhccccccc
Q psy16462 965 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1044 (1522)
Q Consensus 965 vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmENV~g~ls~~~~~~~~~~~~~l~~~gy~~~~ 1044 (1522)
+|+|+||||||+||.||+. ++.+|+|+.|+++|+++|+.++|++||||||+||++. +
T Consensus 68 ~DvligGpPCQ~FS~aG~r--~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~-~-------------------- 124 (328)
T COG0270 68 VDVLIGGPPCQDFSIAGKR--RGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSS-K-------------------- 124 (328)
T ss_pred CCEEEeCCCCcchhhcCcc--cCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhc-C--------------------
Confidence 9999999999999999984 6789999999999999999999999999999999875 2
Q ss_pred ccccCCCCCCCCCcccccccCCCCcccchhhhhhhccccccCCccceeccchhhhhhhhhHHHHHHHHHHHhCCceeEEE
Q psy16462 1045 GTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFG 1124 (1522)
Q Consensus 1045 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~p~~~~lEnV~~~~~~~~~~~~~~il~~L~~lGY~v~~~ 1124 (1522)
+..|+.+++.|.++||.+.+.
T Consensus 125 -----------------------------------------------------------~~~~~~i~~~L~~~GY~~~~~ 145 (328)
T COG0270 125 -----------------------------------------------------------GQTFDEIKKELEELGYGVEFN 145 (328)
T ss_pred -----------------------------------------------------------chHHHHHHHHHHHcCCcchHh
Confidence 245678888999999999999
Q ss_pred EEecCCCCCCCCCCEEEEEEecCCCCCCCCCCCCcccCCCccccccccccccccccccccCCCCCCcccHHHHhcC--CC
Q psy16462 1125 TLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSD--LP 1202 (1522)
Q Consensus 1125 vLnA~~yGVPQ~R~RvfIVg~r~g~~lp~fP~PtH~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~vTv~dAI~D--Lp 1202 (1522)
+|||++|||||+|+|+||||.+++.....+..+ .........++.+++.+ ++
T Consensus 146 ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~i~~~~~~ 199 (328)
T COG0270 146 ILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL--------------------------PPLPLGRKKTLKEALKNNDLP 199 (328)
T ss_pred eeeHHhcCCCCCccEEEEEEecCcccccccccc--------------------------CccccccccchhhhhhhccCc
Confidence 999999999999999999999875111110000 00000123466666663 32
Q ss_pred CCcCCCCccccCcccccchHHHHHHhhccCCCcccccCccccCcHHHHHHHhcCCCCCCCCCCCCCchhhhccCCccccc
Q psy16462 1203 EIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKK 1282 (1522)
Q Consensus 1203 ~~~~g~~~~~~~y~~~p~s~fq~~iR~~~~~~~~l~~h~~~~~~~~~~~Ri~~Ip~~~G~~~~dlp~~~v~l~~g~~~~~ 1282 (1522)
....- +. . .....|.... ++......+++....
T Consensus 200 ~~~~~-------~~-------------~----~~~~~~~~~~-----------~~~~~~~~~~~~~~~------------ 232 (328)
T COG0270 200 ETDEL-------YL-------------S----RDLRNHEAKS-----------LPKNKGERLPSLRWG------------ 232 (328)
T ss_pred chhhh-------hc-------------c----cccccccccc-----------Cchhhhccccccccc------------
Confidence 21000 00 0 0011121110 000000000000000
Q ss_pred cccccccccCCCCCCCcccccccccCCCCCCCCccccccccccCccCCCCCCCCCccccccceeccCCCcceeecCCCCC
Q psy16462 1283 LQYTHNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPM 1362 (1522)
Q Consensus 1283 l~~~~~d~k~g~~~~~~lrg~~~~~~~~g~~~~p~~~~~~~l~p~~~p~~~~r~~~~~~~YgRL~~d~~~sttiT~~~~~ 1362 (1522)
. .. ..+..-.+ .+.|.||.|+.+. .|++.
T Consensus 233 -----------~------------~~---------------------~~~~~~~~--~~~~~rl~~~~~~-~t~~~---- 261 (328)
T COG0270 233 -----------E------------AL---------------------TLSRRYKG--KGSYIRLHPDKPA-PTVRG---- 261 (328)
T ss_pred -----------c------------cc---------------------ccccccCC--CceeEeCCCCCCC-ceeec----
Confidence 0 00 00000000 4679999999994 45442
Q ss_pred CCCCccccCCCCccCcHHHHHHhcCCCCCcccccCHhhHhhheecccCHHHHHHHHHHHHHHHHH
Q psy16462 1363 GKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAE 1427 (1522)
Q Consensus 1363 ~k~g~~iHP~q~R~LTvREaARLQgFPD~y~F~Gs~~~~yrQIGNAVPP~la~aIg~~I~~~L~~ 1427 (1522)
+...+.+||..+|.||+||+||||||||+|.|.|+.+++|+||||||||+++++||++|.+.|..
T Consensus 262 ~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~gs~~~~~~qiGnsVp~~l~~~ia~~i~~~l~~ 326 (328)
T COG0270 262 GGNERFIHPLEDRELTVREAARLQGFPDDFVFPGSKTDQYRQIGNSVPPLLAEAIAKAILKKLNE 326 (328)
T ss_pred CCCcccCCCCcCCCCCHHHHHHhcCCCCceEEeccchhhhhhccCcCCHHHHHHHHHHHHHHhhc
Confidence 12457899999999999999999999999999999999999999999999999999999999875
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=1.8e-53 Score=490.25 Aligned_cols=169 Identities=30% Similarity=0.575 Sum_probs=147.7
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCccc
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVE 966 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~vD 966 (1522)
++++|||||+||+++||+++|+ ++++|+|+|+.|++||++|||+. ++.+||..+.. ..+ .+++|
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~------------~~~--~~~~D 64 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPNK-LIEGDITKIDE------------KDF--IPDID 64 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCCC-CccCccccCch------------hhc--CCCCC
Confidence 5799999999999999999997 99999999999999999999986 56777766521 111 34799
Q ss_pred EEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEEecchhhhccchhHHHHHHHhhhhccccccccc
Q psy16462 967 MLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGT 1046 (1522)
Q Consensus 967 vL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmENV~g~ls~~~~~~~~~~~~~l~~~gy~~~~~~ 1046 (1522)
+|+||||||+||.+|+. ++.+|+++.|+++|+++|+.++|++|+||||+||++.+++
T Consensus 65 ~l~~gpPCq~fS~ag~~--~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~--------------------- 121 (275)
T cd00315 65 LLTGGFPCQPFSIAGKR--KGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNG--------------------- 121 (275)
T ss_pred EEEeCCCChhhhHHhhc--CCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCch---------------------
Confidence 99999999999999973 4567899999999999999999999999999999875322
Q ss_pred ccCCCCCCCCCcccccccCCCCcccchhhhhhhccccccCCccceeccchhhhhhhhhHHHHHHHHHHHhCCceeEEEEE
Q psy16462 1047 LQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTL 1126 (1522)
Q Consensus 1047 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~p~~~~lEnV~~~~~~~~~~~~~~il~~L~~lGY~v~~~vL 1126 (1522)
..++.+++.|.++||++.+.+|
T Consensus 122 ----------------------------------------------------------~~~~~i~~~l~~~GY~~~~~~l 143 (275)
T cd00315 122 ----------------------------------------------------------NTLKVILNTLEELGYNVYWKLL 143 (275)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHhCCcEEEEEEE
Confidence 4566788888999999999999
Q ss_pred ecCCCCCCCCCCEEEEEEecCCCCCC
Q psy16462 1127 QAGHFGVSQTRRRAIVLAAAPGEVLP 1152 (1522)
Q Consensus 1127 nA~~yGVPQ~R~RvfIVg~r~g~~lp 1152 (1522)
||++|||||+|+|+|+||++++...+
T Consensus 144 ~a~~~GvPQ~R~R~~~ia~~~~~~~~ 169 (275)
T cd00315 144 NASDYGVPQNRERVFIIGIRKDLILN 169 (275)
T ss_pred EHHHcCCCCCCcEEEEEEEeCCCCcc
Confidence 99999999999999999999886553
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=2.5e-49 Score=479.21 Aligned_cols=183 Identities=26% Similarity=0.497 Sum_probs=148.2
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC---CCCceeccchHHHHHHhh----cccccccccc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDCNKILQRVI----DNEVCDDKKQ 957 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~---p~~~~~~~Di~~l~~~v~----~g~i~~~~~~ 957 (1522)
.++++|||||||||+++||+++|+ ++++|+|+|+.|++||++|| |+..++.+||.++..... ..++......
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhc
Confidence 478999999999999999999998 99999999999999999998 566778899987732110 0011111112
Q ss_pred cCCCCCcccEEEeCCCCCccccccccCc------ccc-ccchhhhHHHHHHHHHhhCCCEEEEEecchhhhccchhHHHH
Q psy16462 958 KLPRKGEVEMLCGGPPCQGFSGMNRFNQ------RQY-SAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKM 1030 (1522)
Q Consensus 958 ~lp~~g~vDvL~GGPPCQgFS~agr~~~------~~~-~d~rn~L~~~~lr~I~~~rPk~FvmENV~g~ls~~~~~~~~~ 1030 (1522)
.+| ++|||+||||||+||.||+.+. ++. .|.|+.|+++|+++|+..+|++||||||+||++.+++
T Consensus 166 ~~p---~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~fvlENV~gl~s~~~g----- 237 (467)
T PRK10458 166 HIP---DHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIFVLENVKNLKSHDKG----- 237 (467)
T ss_pred cCC---CCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEEEEeCcHhhhccccc-----
Confidence 233 7999999999999999996432 122 3779999999999999999999999999999876433
Q ss_pred HHHhhhhcccccccccccCCCCCCCCCcccccccCCCCcccchhhhhhhccccccCCccceeccchhhhhhhhhHHHHHH
Q psy16462 1031 TMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMT 1110 (1522)
Q Consensus 1031 ~~~~l~~~gy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~p~~~~lEnV~~~~~~~~~~~~~~i 1110 (1522)
..|+.+
T Consensus 238 --------------------------------------------------------------------------~~f~~i 243 (467)
T PRK10458 238 --------------------------------------------------------------------------KTFRII 243 (467)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 456677
Q ss_pred HHHHHhCCceeE---------EEEEecCCCCCCCCCCEEEEEEecCCCCC
Q psy16462 1111 MRCLTQIGYQCT---------FGTLQAGHFGVSQTRRRAIVLAAAPGEVL 1151 (1522)
Q Consensus 1111 l~~L~~lGY~v~---------~~vLnA~~yGVPQ~R~RvfIVg~r~g~~l 1151 (1522)
++.|.++||.|. +.||||.+| |||+|+|+||||++++..+
T Consensus 244 ~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~~~~~ 292 (467)
T PRK10458 244 MQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNL 292 (467)
T ss_pred HHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeCCccc
Confidence 888899999995 689999999 9999999999999987543
No 6
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=2.4e-42 Score=370.76 Aligned_cols=196 Identities=26% Similarity=0.433 Sum_probs=167.6
Q ss_pred EEEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCC
Q psy16462 584 VSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGK 663 (1522)
Q Consensus 584 ~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~ 663 (1522)
|+++|++|++||+|||.|++|+++. ||+++|++|||++ .+||+||||.+|++.+++
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~-----------------------~~~~~~~~G~N~~-~~p~~I~qI~ei~~~k~~ 56 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEE-----------------------RERATFKAGRNVG-LKAFVVCQVLEIVVEKES 56 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccc-----------------------cccccccccccCC-CCCcEEEEEEEEEecccC
Confidence 5789999999999999999998763 6788999999995 469999999999999888
Q ss_pred CCcCCCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccCCCCeEEEe
Q psy16462 664 KNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFN 743 (1522)
Q Consensus 664 ~~~~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~ 743 (1522)
++.++.+++|+|+||||||||.. ..+|++|+||||||++++++|+++|.|||.|++..|++.+. .+. ..+|+|||+
T Consensus 57 ~~~~~~~~~vrVrwFYRPEdt~~--~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~-~~~-~~~~~Ffc~ 132 (202)
T cd04708 57 KQADVASTQVKVRRFYRPEDVSP--EKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSD-APV-IFEHVFFCE 132 (202)
T ss_pred CCCCCcceEEEEEEEechhhcCc--ccceecCceeEEEeccceeechhHcceEEEEEecCcchhhh-ccc-cCCCceEEE
Confidence 77788999999999999999854 55799999999999999999999999999999999998776 455 458999999
Q ss_pred eeccCCCCceecCCcccc-ccccccC---CCCCCCCCCCCCCCcccccc--CCCCCCCceEEeeecCCCcc
Q psy16462 744 EAYNSKTEEFTNLPTEAL-FLGSVSK---GKGKGKNQTNKPEEKDEITE--WPSIARPLRCLEVFAGAGGL 808 (1522)
Q Consensus 744 ~~Yd~~~~~f~~lP~~~r-~~~s~~k---~~~k~k~k~~~~~~~~~~~~--~~~~~~~~~~ldLFaG~GGl 808 (1522)
..||+++++|++||.+++ ...|..+ ..+|+||||+ .++..+..+ ..++.++|++||||||||||
T Consensus 133 ~~Yd~~tg~f~~lP~~~~~~~~~~~~~~~~~~k~kgkgk-~~~~~~~~~~~~~~~~~~LaTLDIFAGCGGL 202 (202)
T cd04708 133 LLYDPAKGSLKQLPPNIKEEAYSTGASDSALRKRKGKGK-GDSESDSEAPVKAPKENRLATLDIFAGCGGL 202 (202)
T ss_pred EEEcCCCCccCCCCchhccccccccccccccccCCCCCc-CccccccccccccccccccceeeeecccCCC
Confidence 999999999999999999 5555554 3366666666 233333323 25688999999999999997
No 7
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=8.2e-38 Score=312.66 Aligned_cols=136 Identities=53% Similarity=0.901 Sum_probs=129.9
Q ss_pred CccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCC-CcCCCceEEEEEEeecccCCCCCcccccccCcceEEe
Q psy16462 623 DEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKK-NVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYW 701 (1522)
Q Consensus 623 de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~-~~~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~ 701 (1522)
||++|||||||+++|++|||+++++||+||||++|...++++ +.++.+++|+|+||||||||+.+..++|++|+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~d~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~ 80 (137)
T cd04711 1 DEDLYPEYYRKSSDYIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYW 80 (137)
T ss_pred CcccchHHhhccccccccccCCCCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEe
Confidence 789999999999999999999999999999999999988776 5577889999999999999999888899999999999
Q ss_pred eccceeeeccceeeeEEEeecCCccccccccccCCCCeEEEeeeccCCCCceecCCc
Q psy16462 702 SDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 758 (1522)
Q Consensus 702 S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~~~Yd~~~~~f~~lP~ 758 (1522)
|+|++++|+++|+|||.|++..+++.++.+|...++++|||+..||.+|++|+++|+
T Consensus 81 Sd~~~~~~~~~I~GKC~V~~~~di~~s~~~y~~~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 81 SDEEATVDFSAVQGRCTVEYGEDLPESVQEYSGGGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred ecceeecChhhccceEEEEeccccchhHHHHhcCCCcceEEhhhhccccCcccCCCC
Confidence 999999999999999999999999999999988899999999999999999999985
No 8
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=2.1e-34 Score=288.28 Aligned_cols=124 Identities=41% Similarity=0.751 Sum_probs=118.8
Q ss_pred CEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccccccCCCCceEeecccCCccccccccc
Q psy16462 410 GEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANL 489 (1522)
Q Consensus 410 g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~~~~~~ElFlsd~cdd~~l~~I~~K 489 (1522)
|++|++||||+|++++++.|||||||++|||+. +|+ +||||||||||+|||||++++++||||||+|++++|++|++|
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~-~g~-k~~h~rWf~Rg~dTVlG~~~~~kEvFlsd~c~d~~l~~I~~K 78 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDS-IGG-KMFHAHWFCRGSDTVLGETSDPLELFLVDECEDMALSSIHGK 78 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecC-CCC-cEEEEEEEEECCcccccccCCCcEEEeecccCCcchHHheee
Confidence 578999999999999999999999999999998 998 999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccc
Q psy16462 490 CQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFC 536 (1522)
Q Consensus 490 c~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~ 536 (1522)
|+|++++|..||+|+||++.+... ..+++++||||++|||+.+||+
T Consensus 79 v~V~~~~p~~~w~~~~g~~~~~~~-~~ddg~tffyq~~yd~~~arf~ 124 (124)
T cd04760 79 VNVIYKAPSENWSMEGGMDEEDEI-FEDDGKTFFYQKWYDPECARFE 124 (124)
T ss_pred eEEEEeCCCcchhhhcCCCCcccc-ccCCCCeEEEEEeeChhhhccC
Confidence 999999999999999999887655 6689999999999999999995
No 9
>PF12047 DNMT1-RFD: Cytosine specific DNA methyltransferase replication foci domain; InterPro: IPR022702 This domain is part of a cytosine specific DNA methyltransferase enzyme. It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDAC2 to the replication foci during the S phase of mitosis. They are thought to have some importance in conversion of critical histone lysine moieties []. A structure exists for the human cytosine specific DNA methyltransferase replication foci domain. ; PDB: 3AV6_A 3AV5_A 3AV4_A 3EPZ_B.
Probab=99.96 E-value=1.9e-29 Score=264.72 Aligned_cols=134 Identities=33% Similarity=0.592 Sum_probs=105.1
Q ss_pred CCCCcccccceEEecCCCCeeecccCccccceEEEEeeeeeccC---CCCCCCCC-CCCcc----cccccceEEeccccC
Q psy16462 57 DDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCIT---SEDPTPEG-GIPVK----EVGPINGWCINGYDG 128 (1522)
Q Consensus 57 ~~~p~~~l~~f~~yd~~~~l~~~~~~~~e~~~~~~~sG~v~~~~---~~~~~~~~-g~~~~----~l~~I~ew~i~~~~g 128 (1522)
+++|+|+|+||+|||++||+|||+++.++.++.+|+||+|+|++ +++++.++ |+... ++|+|++|+|.++++
T Consensus 2 ~~~p~r~L~~f~~~d~~~~~~~le~l~~~~~~~~~~sG~v~~~~~~~~~~~~~~~~g~~~~g~~~~l~~I~~W~i~~~~~ 81 (146)
T PF12047_consen 2 DDLPMRSLDDFSFYDSDGEPVSLELLPIEWNVDLFASGVVKPIGLWGDDEPSPKEKGVRDEGVRIRLGPIKEWWIDGGDD 81 (146)
T ss_dssp SSS-EEEEEEEEEEETTSBB--STTSTTTTT--EEEEEEEEETT-------SSTS-SEEEEC----ES-ECEEEEE-SSS
T ss_pred CCCcceEEEEEEEEeCCCCEEeeeeccccCCCcccceEEecccCcccccCccccccCccCCCcccceeceeEEEEEecCC
Confidence 79999999999999999999999999999999999999999998 45554432 44332 699999999976665
Q ss_pred CccceEEEEccceeeeecCCChhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhcc
Q psy16462 129 GEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDE---NATFEDLLNTLQTA 191 (1522)
Q Consensus 129 ~~~~~i~~~T~~a~Y~L~~Ps~~Y~~~~~~~~~~~~~~~~vi~~l~~~~---~~~~~d~~~~~~~~ 191 (1522)
+. ..|||+|++|||+||+||++|+|||+++++|++|++.||++|++++ ++||+|+|++|.++
T Consensus 82 ~~-~~i~i~T~~awY~L~kPs~~Y~~~y~~~~~~~~l~~~v~~~l~~~~~~~~~s~~d~l~~v~~~ 146 (146)
T PF12047_consen 82 GP-PIIWISTDYAWYRLMKPSKSYAPWYEPFLRKARLTVRVIHFLKKNPRASDLSYEDLLARVFRS 146 (146)
T ss_dssp SS--EEEEEESS-EEEE-SB-TTTHHHHCCHHHHHHHHHHHHHHHHHHT---T--HHHHHHHHHH-
T ss_pred Cc-cEEEEEECCcEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHHhcC
Confidence 55 7999999999999999999999999999999999999999999998 99999999999763
No 10
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.95 E-value=1.3e-27 Score=244.66 Aligned_cols=115 Identities=29% Similarity=0.453 Sum_probs=107.1
Q ss_pred CCEEEecCCEEEEecCCCC----------CCCcEEEEEEEecccCCCeeeEEEEEEeeecccccccccCCCCceEeeccc
Q psy16462 409 GGEEVKVGDYVMVESDDPN----------NPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEAC 478 (1522)
Q Consensus 409 ~g~~~~vGD~V~V~~~d~~----------~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~~~~~~ElFlsd~c 478 (1522)
.|..|+|||+|+|++++++ .+|||++|++||++. +|. +||||||||||+||+||+.++++||||||+|
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~-~g~-~~~h~~W~yrp~eTv~g~~~~~~ElFLSd~c 79 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGS-DGS-KMFHGRWLYRGCDTVLGNYANERELFLTNEC 79 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecC-CCc-eEEEEEEEEcchhccccccCCCceEEEeccc
Confidence 5789999999999999887 589999999999999 998 9999999999999999999999999999999
Q ss_pred CCcccc----ccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCCC
Q psy16462 479 DDVSLN----AVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPN 540 (1522)
Q Consensus 479 dd~~l~----~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 540 (1522)
++++++ +|++||+|++.+++ | .+.+++.|||++.|+++.++|++||.
T Consensus 80 ~~~~~~~~~~~I~~k~~V~~~~~~--~-------------~~~~~~~F~r~syy~~e~~~F~~l~~ 130 (130)
T cd04712 80 TCLELDLLSTEIKGVHKVDWSGTP--W-------------GKGLPEFFVRQSYYWPERGAFTSLKR 130 (130)
T ss_pred cccccccccceeEEEEEEEEecCc--C-------------CcCCCCEEEEEEEECccCCceEcCCC
Confidence 999999 99999999999877 3 13568899999999999999999983
No 11
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=2.3e-26 Score=232.35 Aligned_cols=119 Identities=21% Similarity=0.360 Sum_probs=105.1
Q ss_pred CEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccccc---cCCCCceEeecccCCcccccc
Q psy16462 410 GEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEE---LSDPQELFLLEACDDVSLNAV 486 (1522)
Q Consensus 410 g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~---~~~~~ElFlsd~cdd~~l~~I 486 (1522)
|.+|++||+|+|.+++. .|+|||||++||++. +|. .||||||||||+||++|+ .++++|||||+++|++||+||
T Consensus 1 g~~~~lgD~V~v~~~~~-~~~yi~rI~~i~e~~-~g~-~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I 77 (122)
T cd04716 1 GITYNLGDDAYVQGGEG-EEPFICKITEFFEGT-DGK-TYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCL 77 (122)
T ss_pred CcEEEcCCEEEEECCCC-CCCEEEEEEEEEEcC-CCc-eEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhhe
Confidence 67899999999999865 888999999999998 998 999999999999999998 367999999999999999999
Q ss_pred ccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCCC
Q psy16462 487 ANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPN 540 (1522)
Q Consensus 487 ~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 540 (1522)
++||+|+.+++..+. +.+. ....+++|||+|.|+..+++|.+||.
T Consensus 78 ~~Kc~V~~~~~~~~~--------~~~~-~~~~~~df~c~~~Y~~~~~tF~~~~~ 122 (122)
T cd04716 78 ISKVKILQVPPNVGT--------KRKK-PNSEKCDYYYDMEYCVPYSTFQTLRN 122 (122)
T ss_pred eeeeEEEEeCCCCCc--------cccc-ccCCCceEEEeeEeccchhheEeCCC
Confidence 999999999887431 0111 34568999999999999999999983
No 12
>KOG0919|consensus
Probab=99.92 E-value=1.6e-25 Score=240.11 Aligned_cols=165 Identities=23% Similarity=0.397 Sum_probs=137.1
Q ss_pred CCCceeeeeeccCCCCcccccCCC-ceEEEEEcccHHHHHHHHHhCCCCc-eeccchHHHHHHhhcccccccccccCCCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCT-VFVDDCNKILQRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~-~~~v~AvE~d~~A~~ty~~N~p~~~-~~~~Di~~l~~~v~~g~i~~~~~~~lp~~ 962 (1522)
++|++++|++|.||+-.+|+.|.+ ..+|+|+|+++-|.+.|+.| ++.. +-..||..+.. ..+ ..
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N-~h~~L~k~~~I~~lt~------------kef-d~ 67 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN-YHSNLVKTRNIQSLTV------------KEF-DK 67 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC-cccchhhccccceeeH------------hhh-hh
Confidence 578999999999999999999987 68999999999999999999 3333 23345544421 111 12
Q ss_pred CcccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhC--CCEEEEEecchhhhccchhHHHHHHHhhhhccc
Q psy16462 963 GEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYR--PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGY 1040 (1522)
Q Consensus 963 g~vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~r--Pk~FvmENV~g~ls~~~~~~~~~~~~~l~~~gy 1040 (1522)
-+.++|.-+||||+|...|++ +...|.|...+.+.+.++-..+ |+|++||||+||-++.
T Consensus 68 l~~~m~lMSPpCQPfTRiG~q--~D~~D~Rs~aflhil~~lP~~q~LPeYIL~ENVkGFE~S~----------------- 128 (338)
T KOG0919|consen 68 LQANMLLMSPPCQPFTRIGLQ--RDTEDKRSDAFLHILGLLPECQELPEYILMENVKGFESSQ----------------- 128 (338)
T ss_pred cccceEeeCCCCCchhhhccc--ccccCchhHHHHHHHhhhhhhhhhhHHHHHhhcccchhhh-----------------
Confidence 378999999999999999984 6788999999999999998885 9999999999997653
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCcccchhhhhhhccccccCCccceeccchhhhhhhhhHHHHHHHHHHHhCCce
Q psy16462 1041 QCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQ 1120 (1522)
Q Consensus 1041 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~p~~~~lEnV~~~~~~~~~~~~~~il~~L~~lGY~ 1120 (1522)
.-+.+++.|+..||+
T Consensus 129 -----------------------------------------------------------------ar~~~i~~lencGf~ 143 (338)
T KOG0919|consen 129 -----------------------------------------------------------------ARNQFIESLENCGFH 143 (338)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHhcCch
Confidence 223567788999999
Q ss_pred eEEEEEecCCCCCCCCCCEEEEEEecC
Q psy16462 1121 CTFGTLQAGHFGVSQTRRRAIVLAAAP 1147 (1522)
Q Consensus 1121 v~~~vLnA~~yGVPQ~R~RvfIVg~r~ 1147 (1522)
.+.++|....||+|.+|-|.|.||...
T Consensus 144 ~~EfiLsPtqfniPNsR~Ryy~iArl~ 170 (338)
T KOG0919|consen 144 WREFILSPTQFNIPNSRYRYYCIARLG 170 (338)
T ss_pred hhheeccccccCCCCcchheeehhhhC
Confidence 999999999999999999999998753
No 13
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=7.3e-24 Score=218.00 Aligned_cols=123 Identities=25% Similarity=0.461 Sum_probs=106.0
Q ss_pred EEEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCC
Q psy16462 584 VSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGK 663 (1522)
Q Consensus 584 ~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~ 663 (1522)
+..+|..|++||+|||.|+. .++||+||||++|+..+++
T Consensus 5 ~~~~g~~~~vgD~Vyv~~~~-----------------------------------------~~ePyyIgrI~e~~~~~~~ 43 (135)
T cd04710 5 VLKNGELLKVNDHIYMSSEP-----------------------------------------PGEPYYIGRIMEFVPKHEF 43 (135)
T ss_pred EccCCeEEeCCCEEEEecCC-----------------------------------------CCCCCEEEEEEEEEecCCC
Confidence 56799999999999999975 3689999999999987654
Q ss_pred CCc------CCCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccCCC
Q psy16462 664 KNV------SASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGP 737 (1522)
Q Consensus 664 ~~~------~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~ 737 (1522)
.+. +.+.++|+|+|||||+||.... .+|.||||||+|.+++|+++|+|||.|++.+++++ .++|. ..+
T Consensus 44 ~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~----~~d~relf~S~h~d~~p~~si~gKC~V~~~~di~~-l~~~~-~~~ 117 (135)
T cd04710 44 PSGIHARVFPASYFQVRLNWYYRPRDISRRV----VADSRLLYASMHSDICPIGSVRGKCTVRHRDQIPD-LEEYK-KRP 117 (135)
T ss_pred CccccccccCCCcEEEEEEEEeCHHHcCCcc----cCCceEEEEEeeEeeechHHEEeEEEEEEecccch-hhhhc-cCC
Confidence 332 4677899999999999975322 58999999999999999999999999999999975 55777 469
Q ss_pred CeEEEeeeccCCCCce
Q psy16462 738 HRFYFNEAYNSKTEEF 753 (1522)
Q Consensus 738 d~Fyc~~~Yd~~~~~f 753 (1522)
++|||+.+||+.+++|
T Consensus 118 ~~Fyf~~lyD~~~~r~ 133 (135)
T cd04710 118 NHFYFDQLFDRYILRY 133 (135)
T ss_pred CEEEEEeeeCcchhhc
Confidence 9999999999988765
No 14
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.88 E-value=1.4e-22 Score=212.23 Aligned_cols=129 Identities=22% Similarity=0.382 Sum_probs=112.9
Q ss_pred ccccceeeEEEECCEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccccc-----cCCCCc
Q psy16462 397 MDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEE-----LSDPQE 471 (1522)
Q Consensus 397 ~~~~~~Y~~~~v~g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~-----~~~~~E 471 (1522)
+.++.+|+++.++|.+|+|||+|||.+++. .+||||+|++||++. +|. +|+.+||||||+||.... .++++|
T Consensus 5 ~~~~~~y~s~~~dg~~y~vgD~Vlv~~~~~-~~pyI~~I~~i~~~~-~~~-~~v~V~WFyRpeEi~~~~~~~~~~~~~~E 81 (146)
T cd04713 5 KKKKCHYTSFEKDGNKYRLEDCVLLVPEDD-QKPYIAIIKDIYKQE-EGS-LKLEVQWLYRPEEIEKKKGGNWKAEDPRE 81 (146)
T ss_pred ccceeeeeeEEECCEEEECCCEEEEeCCCC-CCCEEEEEEEEEEcC-CCC-EEEEEEeeECHHHhccccccccccCCCCe
Confidence 457899999999999999999999998876 777999999999998 888 999999999999997532 246899
Q ss_pred eEeecccCCccccccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCCC
Q psy16462 472 LFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPN 540 (1522)
Q Consensus 472 lFlsd~cdd~~l~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 540 (1522)
||+|++.+++++++|.+||+|+..+.+ .+++......+|||+..||+..++|..|-.
T Consensus 82 lF~S~~~d~~~~~~I~gkc~V~~~~~~------------~~~~~~~~~~~F~cr~~yD~~~~~~~~~~~ 138 (146)
T cd04713 82 LFYSFHRDEVPAESVLHPCKVAFVPKG------------KQIPLRKGHSGFIVRRVYDNVNKKLWKLTD 138 (146)
T ss_pred EEEeCCCCcCCHHHCcceeEEEECCcc------------ccCCccCCCCeEEEEEEEcCCCCcEeeccc
Confidence 999999999999999999999988755 223333456899999999999999999975
No 15
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.88 E-value=2.3e-22 Score=203.37 Aligned_cols=122 Identities=18% Similarity=0.257 Sum_probs=105.3
Q ss_pred CeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCcC
Q psy16462 588 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 667 (1522)
Q Consensus 588 g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~~ 667 (1522)
|+.|++||+|||.++. ++|.+||||.+||++.+
T Consensus 1 g~~~~lgD~V~v~~~~------------------------------------------~~~~yi~rI~~i~e~~~----- 33 (122)
T cd04716 1 GITYNLGDDAYVQGGE------------------------------------------GEEPFICKITEFFEGTD----- 33 (122)
T ss_pred CcEEEcCCEEEEECCC------------------------------------------CCCCEEEEEEEEEEcCC-----
Confidence 6789999999999873 46889999999998866
Q ss_pred CCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccCCCCeEEEeeecc
Q psy16462 668 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYN 747 (1522)
Q Consensus 668 ~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~~~Yd 747 (1522)
+..+++|+|||||+||..+.. +..+|.+|||+|++.+.+|+++|+|||.|++.+.......+....++++|||++.|+
T Consensus 34 -g~~~~~v~WyyRpeet~~~r~-~~~~~~rEvFlS~~~D~~pl~~I~~Kc~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~ 111 (122)
T cd04716 34 -GKTYFTAQWFYRAEDTVIERQ-ATNHDKKRVFYSEIKNDNPLDCLISKVKILQVPPNVGTKRKKPNSEKCDYYYDMEYC 111 (122)
T ss_pred -CceEEEEEEEEcHHHhccccc-cccCCCceEEEecccCccchhheeeeeEEEEeCCCCCcccccccCCCceEEEeeEec
Confidence 567999999999999987553 457899999999999999999999999999988765442233446789999999999
Q ss_pred CCCCceecCCc
Q psy16462 748 SKTEEFTNLPT 758 (1522)
Q Consensus 748 ~~~~~f~~lP~ 758 (1522)
....+|+.||+
T Consensus 112 ~~~~tF~~~~~ 122 (122)
T cd04716 112 VPYSTFQTLRN 122 (122)
T ss_pred cchhheEeCCC
Confidence 99999999984
No 16
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=2.5e-22 Score=212.31 Aligned_cols=127 Identities=20% Similarity=0.309 Sum_probs=110.4
Q ss_pred eEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCcCC
Q psy16462 589 EQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSA 668 (1522)
Q Consensus 589 ~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~~~ 668 (1522)
..|+|||+||+.++. ..||+||||++|+.+..
T Consensus 2 ~~yrvGD~Vy~~~~~------------------------------------------~~Py~I~rI~e~~~~~~------ 33 (164)
T cd04709 2 NMYRVGDYVYFESSP------------------------------------------NNPYLIRRIEELNKTAR------ 33 (164)
T ss_pred cEEecCCEEEEECCC------------------------------------------CCCCEEEEEEEEEeCCC------
Confidence 579999999999853 45899999999998765
Q ss_pred CceEEEEEEeecccCCCCCc--------------------ccccccCcceEEeeccceeeeccceeeeEEEeecCCcccc
Q psy16462 669 SDVFLTVKKFYRPENTHRSV--------------------EFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQIS 728 (1522)
Q Consensus 669 ~~~~v~V~wfYRPeDt~~~~--------------------~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~ 728 (1522)
+.+.++|+|||||+|+..+. ..+++.+.||||+|++.+++|+++|+|||.|++.+++...
T Consensus 34 ~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l 113 (164)
T cd04709 34 GHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLRHRELFLSRQVETLPATHIRGKCSVTLLNDTESA 113 (164)
T ss_pred CCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccCcceeEEecccccccHHHeeeeEEEEEehhhhhh
Confidence 68999999999999985431 1234568999999999999999999999999999999764
Q ss_pred ccccccCCCCeEEEeeeccCCCCceecCCcccccccc
Q psy16462 729 TDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGS 765 (1522)
Q Consensus 729 ~~~~~~~~~d~Fyc~~~Yd~~~~~f~~lP~~~r~~~s 765 (1522)
..|. ..+|+|||+..||+.+++|-.-.+++|++++
T Consensus 114 -~~~~-~~~d~Ff~~~~YDP~~k~l~~~~geirvg~~ 148 (164)
T cd04709 114 -RSYL-AREDTFFYSLVYDPEQKTLLADQGEIRVGPS 148 (164)
T ss_pred -hhcc-CCCCEEEEEEEECCCCCeecccceeEEecCc
Confidence 4676 5789999999999999999999999998864
No 17
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=3.5e-22 Score=203.04 Aligned_cols=117 Identities=23% Similarity=0.359 Sum_probs=99.3
Q ss_pred CEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeeccccccccc--CCCCceEeecccCCccccccc
Q psy16462 410 GEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEEL--SDPQELFLLEACDDVSLNAVA 487 (1522)
Q Consensus 410 g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~~--~~~~ElFlsd~cdd~~l~~I~ 487 (1522)
|++|++||+|+|.+++...+||||+|++||++. +|. +||+++|||||+||.+|++ ++++|||+|++.|++|+++|.
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~-~g~-~~~~v~WfyrPeEt~~~~~~~~~~~EvF~S~~~d~~~~~~I~ 78 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDP-EGN-MVVRVKWYYRPEETKGGRKPNHGEKELFASDHQDENSVQTIE 78 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcC-CCC-EEEEEEEEEcHHHccCcccccCCCCceEecCCcccccHHHhC
Confidence 579999999999998776788999999999998 898 9999999999999999976 589999999999999999999
Q ss_pred cceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCccc
Q psy16462 488 NLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARF 535 (1522)
Q Consensus 488 ~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F 535 (1522)
+||+|+..+.+... ...+ + ......+.|+|++.|||+...+
T Consensus 79 gkc~V~~~~ey~~~---~~~~-~---~~~~~~d~~~Ce~~yn~~~~~~ 119 (121)
T cd04714 79 HKCYVLTFAEYERL---ARVK-K---KPQDGVDFYYCAGTYNPDTGML 119 (121)
T ss_pred cccEEEehhHheec---cccc-C---CCCcCCCEEEEeccCCCCcCcc
Confidence 99999988776331 0000 0 1235679999999999988654
No 18
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=1.3e-21 Score=199.34 Aligned_cols=118 Identities=20% Similarity=0.333 Sum_probs=101.5
Q ss_pred CEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeeccccccccc--CCCCceEeecccCCccccccc
Q psy16462 410 GEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEEL--SDPQELFLLEACDDVSLNAVA 487 (1522)
Q Consensus 410 g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~~--~~~~ElFlsd~cdd~~l~~I~ 487 (1522)
|..|++||+|+|.+++...+||||+|++||++. +|. ++|+|+||+||+||.++.+ +.++|||+|++++++|+++|+
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~-~g~-~~~~~~Wf~rP~et~~~~~~~~~~~Evfls~~~d~~~~~~I~ 78 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDE-DGE-KFFFGCWFYRPEETFHEPTRKFYKNEVFKSPLYETVPVEEIV 78 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECC-CCC-EEEEEEEEeChHHccCCCccccccCceEEcCccccccHHHhc
Confidence 568999999999998765778999999999998 898 9999999999999998664 679999999999999999999
Q ss_pred cceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCC
Q psy16462 488 NLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVP 539 (1522)
Q Consensus 488 ~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp 539 (1522)
+||+|+..+.+.. + .+......++|||++.|++..+.|..|+
T Consensus 79 ~kc~Vl~~~~y~~----~------~p~~~~~~dvy~ce~~y~~~~~~~~~~k 120 (121)
T cd04717 79 GKCAVMDVKDYIK----G------RPTEISEEDVYVCESRYNESAKSFKKIK 120 (121)
T ss_pred CeeEEEehHHHhc----C------CCCCCCCCCEEEEeEEECcccccEeccc
Confidence 9999998876632 1 1112234588999999999999999885
No 19
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.85 E-value=1.3e-21 Score=197.79 Aligned_cols=119 Identities=34% Similarity=0.666 Sum_probs=102.1
Q ss_pred EEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccccccCCCCceEeecccCCccccccccce
Q psy16462 411 EEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLC 490 (1522)
Q Consensus 411 ~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~~~~~~ElFlsd~cdd~~l~~I~~Kc 490 (1522)
++|++||+|+|.++++..++|||+|++||++..++..+|++++||+||+||.+++.++++|||+|++|+++|+++|.+||
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~~~~~~~~~Elf~s~~~~~~~~~~I~gkc 80 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTSLGKTFSPRELFLSDHCDDIPVESIRGKC 80 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGSTTGGHSCTTEEEEEEEEEEEEGGGEEEEE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccccccccCCCCEEEEECcEeEEehhhEEeee
Confidence 47999999999999988899999999999997333138999999999999988888999999999999999999999999
Q ss_pred EEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCC
Q psy16462 491 QVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVP 539 (1522)
Q Consensus 491 ~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp 539 (1522)
.|+....+..+ ...... .++.|||++.||+.+++|.++|
T Consensus 81 ~V~~~~~~~~~---------~~~~~~-~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 81 NVLHLEDYEQA---------RPYGKE-EPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp EEEEHHHHTTG---------CCHCHH-TTTEEEEEEEEETTTTEEEE-S
T ss_pred EEEECCccccc---------cccccC-CCCEEEEEEEEeCCcCEEeCCC
Confidence 99998766432 100012 6899999999999999999987
No 20
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.85 E-value=6.4e-21 Score=199.70 Aligned_cols=131 Identities=21% Similarity=0.347 Sum_probs=108.5
Q ss_pred CceEEEEEEEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEE
Q psy16462 577 THEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVA 656 (1522)
Q Consensus 577 ~~~~y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~ 656 (1522)
.+.+|++|.++|++|+|||+|||.|+. ..+++||+|.+
T Consensus 7 ~~~~y~s~~~dg~~y~vgD~Vlv~~~~------------------------------------------~~~pyI~~I~~ 44 (146)
T cd04713 7 KKCHYTSFEKDGNKYRLEDCVLLVPED------------------------------------------DQKPYIAIIKD 44 (146)
T ss_pred ceeeeeeEEECCEEEECCCEEEEeCCC------------------------------------------CCCCEEEEEEE
Confidence 478999999999999999999999863 35679999999
Q ss_pred EEeccCCCCcCCCceEEEEEEeecccCCCCCcccc-cccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccC
Q psy16462 657 IFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFT-YQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSR 735 (1522)
Q Consensus 657 I~~~~~~~~~~~~~~~v~V~wfYRPeDt~~~~~~~-~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~ 735 (1522)
||...+ +..+++|+|||||+||....... ..+|.||||+|++.+.+|+++|.|||.|++.++... ++.- .
T Consensus 45 i~~~~~------~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S~~~d~~~~~~I~gkc~V~~~~~~~~-~~~~--~ 115 (146)
T cd04713 45 IYKQEE------GSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYSFHRDEVPAESVLHPCKVAFVPKGKQ-IPLR--K 115 (146)
T ss_pred EEEcCC------CCEEEEEEeeECHHHhccccccccccCCCCeEEEeCCCCcCCHHHCcceeEEEECCcccc-CCcc--C
Confidence 998765 68899999999999997533322 245789999999999999999999999998875542 2111 2
Q ss_pred CCCeEEEeeeccCCCCceecCCc
Q psy16462 736 GPHRFYFNEAYNSKTEEFTNLPT 758 (1522)
Q Consensus 736 ~~d~Fyc~~~Yd~~~~~f~~lP~ 758 (1522)
..+.|||+..||..+++|.+|-.
T Consensus 116 ~~~~F~cr~~yD~~~~~~~~~~~ 138 (146)
T cd04713 116 GHSGFIVRRVYDNVNKKLWKLTD 138 (146)
T ss_pred CCCeEEEEEEEcCCCCcEeeccc
Confidence 56889999999999999998853
No 21
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.84 E-value=4.3e-21 Score=194.39 Aligned_cols=118 Identities=29% Similarity=0.515 Sum_probs=103.4
Q ss_pred CEEEecCCEEEEecCCC--CCCCcEEEEEEEecccCCCeeeEEEEEEeeeccccccccc--CCCCceEeecccCCccccc
Q psy16462 410 GEEVKVGDYVMVESDDP--NNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEEL--SDPQELFLLEACDDVSLNA 485 (1522)
Q Consensus 410 g~~~~vGD~V~V~~~d~--~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~~--~~~~ElFlsd~cdd~~l~~ 485 (1522)
|.+|++||+|+|.+++. ..++|||+|++||++. +|. +|+|++|||||+||.++.. ++++|||+|++|+++++++
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~-~~~-~~~~v~wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~v~~ 78 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDT-NGS-KQVKVRWFYRPEETPKGLSPFALRRELFLSDHLDEIPVES 78 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECC-CCC-EEEEEEEEEchhHhccccccccccceeEEecCccccCHHH
Confidence 57899999999999875 4678999999999998 888 9999999999999999988 8999999999999999999
Q ss_pred cccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccC
Q psy16462 486 VANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDV 538 (1522)
Q Consensus 486 I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~l 538 (1522)
|.+||+|++...+... .. .+....++.|||++.||+.++.|+.+
T Consensus 79 I~gkc~V~~~~~~~~~--~~-------~~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 79 IIGKCKVLFVSEFEGL--KQ-------RPNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred hccccEEEechHhhcc--cc-------ccccCCCCeEEEEEEECcCcceEEeC
Confidence 9999999999876321 00 11335678999999999999999876
No 22
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.83 E-value=1.2e-20 Score=190.95 Aligned_cols=118 Identities=30% Similarity=0.551 Sum_probs=100.5
Q ss_pred EEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeeccccccccc--CCCCceEeecccCCccccccccc
Q psy16462 412 EVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEEL--SDPQELFLLEACDDVSLNAVANL 489 (1522)
Q Consensus 412 ~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~~--~~~~ElFlsd~cdd~~l~~I~~K 489 (1522)
.|++||+|+|.+++.+.++|||+|+.||++. +|..+|+++|||+||+||.+++. ++++|||+|++|+++++++|.+|
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~-~~~~~~~~v~Wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~~~~I~~k 79 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETK-KNSEKMVRVRWFYRPEETVLEKAALFDKNEVFLSDEYDTVPLSDIIGK 79 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECC-CCCEEEEEEEEEEChhhccccccccCCCcceEEEccCccCChHHeeeE
Confidence 3789999999999987889999999999997 55226999999999999999876 57999999999999999999999
Q ss_pred eEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCC
Q psy16462 490 CQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVP 539 (1522)
Q Consensus 490 c~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp 539 (1522)
|+|+..+++..+ ........+++|||++.|++.+++|.++|
T Consensus 80 c~V~~~~~~~~~---------~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 80 CNVLSKSDYPGL---------RPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred EEEEEcchhccc---------ccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 999999877321 00001135799999999999999999886
No 23
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.83 E-value=2.2e-20 Score=188.85 Aligned_cols=119 Identities=29% Similarity=0.558 Sum_probs=98.5
Q ss_pred eEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCcCC
Q psy16462 589 EQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSA 668 (1522)
Q Consensus 589 ~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~~~ 668 (1522)
++|++||||||.++. .+.|++||||.+||...+.+
T Consensus 1 ~~~~vGD~V~v~~~~-----------------------------------------~~~~~~v~~I~~i~~~~~~~---- 35 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDD-----------------------------------------PPEPPYVARIEEIWEDKDGN---- 35 (119)
T ss_dssp EEEETTSEEEEECTS-----------------------------------------TTSEEEEEEEEEEEEETTTS----
T ss_pred CEEeCCCEEEEeCCC-----------------------------------------CCCCCEEEEEEEEEcCCCCC----
Confidence 589999999999974 36789999999999987621
Q ss_pred CceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccCCCCeEEEeeeccC
Q psy16462 669 SDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNS 748 (1522)
Q Consensus 669 ~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~~~Yd~ 748 (1522)
..++++|+|||||+||. .... .+.||||+|++.+++|+++|+|||.|++.+++......... .+++|||++.||+
T Consensus 36 ~~~~~~v~Wf~rp~d~~--~~~~--~~~~Elf~s~~~~~~~~~~I~gkc~V~~~~~~~~~~~~~~~-~~~~F~cr~~yd~ 110 (119)
T PF01426_consen 36 KEKMVKVRWFYRPEDTS--LGKT--FSPRELFLSDHCDDIPVESIRGKCNVLHLEDYEQARPYGKE-EPDTFFCRYAYDP 110 (119)
T ss_dssp EEEEEEEEEEEEGGGST--TGGH--SCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTGCCHCHH-TTTEEEEEEEEET
T ss_pred EEEEEEEEEeECccccc--cccc--CCCCEEEEECcEeEEehhhEEeeeEEEECCccccccccccC-CCCEEEEEEEEeC
Confidence 35999999999999982 2212 33499999999999999999999999999988654433323 6899999999999
Q ss_pred CCCceecCC
Q psy16462 749 KTEEFTNLP 757 (1522)
Q Consensus 749 ~~~~f~~lP 757 (1522)
.+++|+++|
T Consensus 111 ~~~~f~~~~ 119 (119)
T PF01426_consen 111 QKKRFKKLP 119 (119)
T ss_dssp TTTEEEE-S
T ss_pred CcCEEeCCC
Confidence 999999987
No 24
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.82 E-value=2.7e-20 Score=189.62 Aligned_cols=120 Identities=24% Similarity=0.361 Sum_probs=103.0
Q ss_pred CeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCcC
Q psy16462 588 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 667 (1522)
Q Consensus 588 g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~~ 667 (1522)
|..|++||+|||.++. .+.+.+||||.+||...+
T Consensus 1 g~~~~vGD~V~v~~~~-----------------------------------------~~~~~~i~~I~~i~~~~~----- 34 (121)
T cd04717 1 GLQYRVGDCVYVANPE-----------------------------------------DPSKPIIFRIERLWKDED----- 34 (121)
T ss_pred CCEEECCCEEEEeCCC-----------------------------------------CCCCCEEEEEeEEEECCC-----
Confidence 6789999999999864 235678999999999875
Q ss_pred CCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccCCCCeEEEeeecc
Q psy16462 668 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYN 747 (1522)
Q Consensus 668 ~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~~~Yd 747 (1522)
+..+++|+|||||+||.+...+ ....||||+|.+.+++|+++|+|||.|+..+++....+... ...|+|+|++.||
T Consensus 35 -g~~~~~~~Wf~rP~et~~~~~~--~~~~~Evfls~~~d~~~~~~I~~kc~Vl~~~~y~~~~p~~~-~~~dvy~ce~~y~ 110 (121)
T cd04717 35 -GEKFFFGCWFYRPEETFHEPTR--KFYKNEVFKSPLYETVPVEEIVGKCAVMDVKDYIKGRPTEI-SEEDVYVCESRYN 110 (121)
T ss_pred -CCEEEEEEEEeChHHccCCCcc--ccccCceEEcCccccccHHHhcCeeEEEehHHHhcCCCCCC-CCCCEEEEeEEEC
Confidence 6799999999999999876654 34689999999999999999999999999999877665544 3568999999999
Q ss_pred CCCCceecCC
Q psy16462 748 SKTEEFTNLP 757 (1522)
Q Consensus 748 ~~~~~f~~lP 757 (1522)
+..+.|+++.
T Consensus 111 ~~~~~~~~~k 120 (121)
T cd04717 111 ESAKSFKKIK 120 (121)
T ss_pred cccccEeccc
Confidence 9999998874
No 25
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.80 E-value=1.9e-19 Score=189.95 Aligned_cols=106 Identities=28% Similarity=0.432 Sum_probs=93.0
Q ss_pred EecCccccccccceeeEEEECCEEEecCCEEEEecCCCCCCCcEEEEEEEecccCC--CeeeEEEEEEeeeccccccc--
Q psy16462 389 EWQGEGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKN--FKTRKCHILWFARGQETVLE-- 464 (1522)
Q Consensus 389 ~W~G~~~~~~~~~~Y~~~~v~g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~--G~~k~~h~~Wf~R~~eTvLg-- 464 (1522)
.|.|+|.-+.++.||+++.++|+.|+|||+|+|.+++ .+||||+|.+||++. + |. +|+|++|||||+||+.+
T Consensus 6 ~~~g~~~~~~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~--~~~yIgkI~~iwe~~-~~~g~-~~~~v~WfyRp~E~~~~~~ 81 (159)
T cd04715 6 VKRGEGGKKKDGQFYRSFTYDGVEYRLYDDVYVHNGD--SEPYIGKIIKIYETA-IDSGK-KKVKVIWFFRPSEIRMELK 81 (159)
T ss_pred eecccccccCCceEEEEEEECCEEEeCCCEEEEeCCC--CCCEEEEEEEEEEcC-CcCCc-eEEEEEeeeCHHHhccccc
Confidence 5889998445566999999999999999999999854 778999999999986 5 88 99999999999999853
Q ss_pred -c-cCCCCceEeeccc-----CCccccccccceEEEeecCC
Q psy16462 465 -E-LSDPQELFLLEAC-----DDVSLNAVANLCQVKHFPIS 498 (1522)
Q Consensus 465 -~-~~~~~ElFlsd~c-----dd~~l~~I~~Kc~V~~~~~~ 498 (1522)
. .+.++|||||+++ ++|||++|++||+|+..+.+
T Consensus 82 ~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey 122 (159)
T cd04715 82 GEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISED 122 (159)
T ss_pred cCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHh
Confidence 3 4789999999875 77999999999999988765
No 26
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.80 E-value=1.2e-19 Score=183.83 Aligned_cols=122 Identities=26% Similarity=0.432 Sum_probs=102.8
Q ss_pred CeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCcC
Q psy16462 588 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 667 (1522)
Q Consensus 588 g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~~ 667 (1522)
|.+|++||+|||.++... .++|++||+|.+||...+
T Consensus 1 g~~y~vgd~V~v~~~~~~---------------------------------------~~~~~~i~~I~~i~~~~~----- 36 (123)
T cd04370 1 GITYEVGDSVYVEPDDSI---------------------------------------KSDPPYIARIEELWEDTN----- 36 (123)
T ss_pred CCEEecCCEEEEecCCcC---------------------------------------CCCCCEEEEEeeeeECCC-----
Confidence 678999999999987410 256889999999999865
Q ss_pred CCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccCCCCeEEEeeecc
Q psy16462 668 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYN 747 (1522)
Q Consensus 668 ~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~~~Yd 747 (1522)
+..+++|+|||||+||..... ...+.||||+|++.+++|+++|.|||.|++.+++....+......+++|||++.||
T Consensus 37 -~~~~~~v~wf~rp~e~~~~~~--~~~~~~Elf~s~~~~~i~v~~I~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd 113 (123)
T cd04370 37 -GSKQVKVRWFYRPEETPKGLS--PFALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYD 113 (123)
T ss_pred -CCEEEEEEEEEchhHhccccc--cccccceeEEecCccccCHHHhccccEEEechHhhccccccccCCCCeEEEEEEEC
Confidence 789999999999999986554 35789999999999999999999999999999876543222335789999999999
Q ss_pred CCCCceecC
Q psy16462 748 SKTEEFTNL 756 (1522)
Q Consensus 748 ~~~~~f~~l 756 (1522)
+.+++|+.+
T Consensus 114 ~~~~~fk~~ 122 (123)
T cd04370 114 PTTKEFKAL 122 (123)
T ss_pred cCcceEEeC
Confidence 999999876
No 27
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.80 E-value=1.1e-19 Score=184.80 Aligned_cols=115 Identities=21% Similarity=0.376 Sum_probs=96.3
Q ss_pred CeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCcC
Q psy16462 588 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 667 (1522)
Q Consensus 588 g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~~ 667 (1522)
|+.|++||+|||.++. .+.+++||||.+||.+.+
T Consensus 1 ~~~~~vGD~V~v~~~~-----------------------------------------~~~~pyIgrI~~i~e~~~----- 34 (121)
T cd04714 1 KEIIRVGDCVLFKSPG-----------------------------------------RPSLPYVARIESLWEDPE----- 34 (121)
T ss_pred CCEEEcCCEEEEeCCC-----------------------------------------CCCCCEEEEEEEEEEcCC-----
Confidence 5789999999999863 245678999999998765
Q ss_pred CCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCcccccc---ccccCCCCeEEEee
Q psy16462 668 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTD---RWSSRGPHRFYFNE 744 (1522)
Q Consensus 668 ~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~---~~~~~~~d~Fyc~~ 744 (1522)
+..+++|+|||||+||.++.. ..++.||||+|++.+++|+++|.|||.|++.+++....+ ... ..+++|+|++
T Consensus 35 -g~~~~~v~WfyrPeEt~~~~~--~~~~~~EvF~S~~~d~~~~~~I~gkc~V~~~~ey~~~~~~~~~~~-~~~d~~~Ce~ 110 (121)
T cd04714 35 -GNMVVRVKWYYRPEETKGGRK--PNHGEKELFASDHQDENSVQTIEHKCYVLTFAEYERLARVKKKPQ-DGVDFYYCAG 110 (121)
T ss_pred -CCEEEEEEEEEcHHHccCccc--ccCCCCceEecCCcccccHHHhCcccEEEehhHheecccccCCCC-cCCCEEEEec
Confidence 678999999999999987654 347899999999999999999999999999998864332 122 4679999999
Q ss_pred eccCCCCc
Q psy16462 745 AYNSKTEE 752 (1522)
Q Consensus 745 ~Yd~~~~~ 752 (1522)
.||+...-
T Consensus 111 ~yn~~~~~ 118 (121)
T cd04714 111 TYNPDTGM 118 (121)
T ss_pred cCCCCcCc
Confidence 99998653
No 28
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.79 E-value=3.6e-19 Score=180.11 Aligned_cols=104 Identities=32% Similarity=0.532 Sum_probs=89.2
Q ss_pred CCCceeeEEEEEEeccCCCCcCCCc-eEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCC
Q psy16462 646 PAPFGIGYIVAIFKKKGKKNVSASD-VFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDN 724 (1522)
Q Consensus 646 ~~p~~IgrI~~I~~~~~~~~~~~~~-~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d 724 (1522)
.+|++||+|.+||.+.+ +. .+++|+|||||+||.....+ ..+.||||+|++.+++|+++|.|||.|++.++
T Consensus 16 ~~~~~i~~I~~i~~~~~------~~~~~~~v~Wf~rp~e~~~~~~~--~~~~~Elf~s~~~~~i~~~~I~~kc~V~~~~~ 87 (120)
T smart00439 16 DEPYYIGRIEEIFETKK------NSEKMVRVRWFYRPEETVLEKAA--LFDKNEVFLSDEYDTVPLSDIIGKCNVLSKSD 87 (120)
T ss_pred CCCCEEEEEEEEEECCC------CCEEEEEEEEEEChhhccccccc--cCCCcceEEEccCccCChHHeeeEEEEEEcch
Confidence 56899999999999876 45 89999999999999865543 45799999999999999999999999999998
Q ss_pred ccccccccccCCCCeEEEeeeccCCCCceecCC
Q psy16462 725 LQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLP 757 (1522)
Q Consensus 725 ~~~~~~~~~~~~~d~Fyc~~~Yd~~~~~f~~lP 757 (1522)
+....+......++.|||++.||..++.|..+|
T Consensus 88 ~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 88 YPGLRPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred hcccccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 865554444336799999999999999998876
No 29
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.79 E-value=3e-19 Score=184.06 Aligned_cols=120 Identities=22% Similarity=0.409 Sum_probs=101.5
Q ss_pred EEECCEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCe-----------eeEEEEEEeeecccccccccCCCCceEe
Q psy16462 406 ALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFK-----------TRKCHILWFARGQETVLEELSDPQELFL 474 (1522)
Q Consensus 406 ~~v~g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~-----------~k~~h~~Wf~R~~eTvLg~~~~~~ElFl 474 (1522)
+..+|..|++||+|||.+++++.|.|||||++|+... ++. ..+|++||||||+|+..+..++++|||+
T Consensus 5 ~~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~-~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~~~d~relf~ 83 (135)
T cd04710 5 VLKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKH-EFPSGIHARVFPASYFQVRLNWYYRPRDISRRVVADSRLLYA 83 (135)
T ss_pred EccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecC-CCCccccccccCCCcEEEEEEEEeCHHHcCCcccCCceEEEE
Confidence 4568999999999999999999999999999999964 332 1589999999999987666699999999
Q ss_pred ecccCCccccccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCccccc
Q psy16462 475 LEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCD 537 (1522)
Q Consensus 475 sd~cdd~~l~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~ 537 (1522)
|+|++.+|+++|.|||+|+++....+. . .-...++.|||...||+...+|.+
T Consensus 84 S~h~d~~p~~si~gKC~V~~~~di~~l---------~--~~~~~~~~Fyf~~lyD~~~~r~~~ 135 (135)
T cd04710 84 SMHSDICPIGSVRGKCTVRHRDQIPDL---------E--EYKKRPNHFYFDQLFDRYILRYYD 135 (135)
T ss_pred EeeEeeechHHEEeEEEEEEecccchh---------h--hhccCCCEEEEEeeeCcchhhccC
Confidence 999999999999999999998755220 1 122358999999999999999863
No 30
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.74 E-value=6.4e-18 Score=178.99 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=97.4
Q ss_pred EEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccc-------c-----------------cc
Q psy16462 411 EEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVL-------E-----------------EL 466 (1522)
Q Consensus 411 ~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvL-------g-----------------~~ 466 (1522)
.+|+|||+|||++. ++.|+||+||++||++. +|. .+++++||||++|+.. + ..
T Consensus 2 ~~yrvGD~Vy~~~~-~~~Py~I~rI~e~~~~~-~~~-~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~ 78 (164)
T cd04709 2 NMYRVGDYVYFESS-PNNPYLIRRIEELNKTA-RGH-VEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQ 78 (164)
T ss_pred cEEecCCEEEEECC-CCCCCEEEEEEEEEeCC-CCC-EEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhc
Confidence 58999999999988 57788899999999998 887 9999999999999732 1 11
Q ss_pred CCCCceEeecccCCccccccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCCC
Q psy16462 467 SDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPN 540 (1522)
Q Consensus 467 ~~~~ElFlsd~cdd~~l~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 540 (1522)
.++||||+|++-+.+|+++|.|||.|+.+...... . .-...++.|||...|||.+++|.+-.-
T Consensus 79 ~~~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l---------~--~~~~~~d~Ff~~~~YDP~~k~l~~~~g 141 (164)
T cd04709 79 LRHRELFLSRQVETLPATHIRGKCSVTLLNDTESA---------R--SYLAREDTFFYSLVYDPEQKTLLADQG 141 (164)
T ss_pred cCcceeEEecccccccHHHeeeeEEEEEehhhhhh---------h--hccCCCCEEEEEEEECCCCCeecccce
Confidence 47999999999999999999999999999876331 0 012457999999999999999987553
No 31
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.74 E-value=4.4e-18 Score=174.73 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=93.2
Q ss_pred EECCEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccccc--c-CCCCceEeecccCCccc
Q psy16462 407 LIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEE--L-SDPQELFLLEACDDVSL 483 (1522)
Q Consensus 407 ~v~g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~--~-~~~~ElFlsd~cdd~~l 483 (1522)
..+|.+|++||||||.+++ .++|||+|++||++. +|. +|++|+||+||+||..+. . +.++|||+|++-+++|+
T Consensus 2 ~r~~~~i~vGD~V~v~~~~--~~~~va~Ie~i~ed~-~g~-~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~ 77 (130)
T cd04721 2 CRNGVTISVHDFVYVLSEE--EDRYVAYIEDLYEDK-KGS-KMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISV 77 (130)
T ss_pred ccCCEEEECCCEEEEeCCC--CCcEEEEEEEEEEcC-CCC-EEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccch
Confidence 3578999999999999876 456999999999998 898 999999999999998754 3 78999999999999999
Q ss_pred cccccceEEEeecCCchhhccCCCCCCCCCCC-CCCCCeEEEEEEeccc
Q psy16462 484 NAVANLCQVKHFPISENWAMQGGCPQPTPPVD-REDERSFYYRQTYDPL 531 (1522)
Q Consensus 484 ~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~ffc~~~Y~~~ 531 (1522)
++|.+||+|+....+..- ...+. .....+|+|+..||..
T Consensus 78 ~~I~gk~~Vls~~~y~k~---------~~~~~~~~~~~~f~C~~~~d~~ 117 (130)
T cd04721 78 ECIDGLATVLTREHYEKF---------QSVPKNSSELQAYFCYRQIDNN 117 (130)
T ss_pred HHeeeeeEECCHHHHhhh---------hccccCccccccEEEEEEecCC
Confidence 999999999987766321 00001 1336799999999986
No 32
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.73 E-value=1e-17 Score=181.10 Aligned_cols=122 Identities=21% Similarity=0.301 Sum_probs=100.9
Q ss_pred EECCEEEecCCEEEEecCC-----------------CCCCCcEEEEEEEecccCCC-----eeeEEEEEEeeeccccccc
Q psy16462 407 LIGGEEVKVGDYVMVESDD-----------------PNNPPPVGKVCYMYEDMKNF-----KTRKCHILWFARGQETVLE 464 (1522)
Q Consensus 407 ~v~g~~~~vGD~V~V~~~d-----------------~~~p~~IarIe~m~e~~~~G-----~~k~~h~~Wf~R~~eTvLg 464 (1522)
.++|..|++||+|||.|+- ...|.+||+|.+|++.. ++ ...++++||||||+||...
T Consensus 2 ~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k-~~~~~~~~~~~vrVrwFYRPEdt~~~ 80 (202)
T cd04708 2 VYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEK-ESKQADVASTQVKVRRFYRPEDVSPE 80 (202)
T ss_pred cCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecc-cCCCCCCcceEEEEEEEechhhcCcc
Confidence 4689999999999999981 23589999999999865 43 1279999999999999663
Q ss_pred cc--CCCCceEeecccCCccccccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCCC
Q psy16462 465 EL--SDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPN 540 (1522)
Q Consensus 465 ~~--~~~~ElFlsd~cdd~~l~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 540 (1522)
.. ++.+|||+|++-+++|+++|.+||+|+....... . ......++.|||+..||+.++.|+.||.
T Consensus 81 ~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~----------~-~~~~~~~~~Ffc~~~Yd~~tg~f~~lP~ 147 (202)
T cd04708 81 KAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPD----------S-DAPVIFEHVFFCELLYDPAKGSLKQLPP 147 (202)
T ss_pred cceecCceeEEEeccceeechhHcceEEEEEecCcchh----------h-hccccCCCceEEEEEEcCCCCccCCCCc
Confidence 33 6899999999999999999999999998865421 0 0112348999999999999999999996
No 33
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.71 E-value=2.2e-18 Score=176.84 Aligned_cols=94 Identities=17% Similarity=0.269 Sum_probs=83.3
Q ss_pred CCcEEEEEEEecccCCCeeeEEEEEEeeeccccccccc--CCCCceEeecccCCccccccccceEEEeecCCchhhccCC
Q psy16462 429 PPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEEL--SDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGG 506 (1522)
Q Consensus 429 p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~~--~~~~ElFlsd~cdd~~l~~I~~Kc~V~~~~~~~~w~~~~~ 506 (1522)
.+|||||+.||++ +|. .+|+|+|||||+||.+|++ +..+||||||+.+++++++|++||.|+..+.+.
T Consensus 52 ~~~vArIekiW~~--~G~-~~~~grWy~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~------- 121 (148)
T cd04718 52 DLWLARIEKLWEE--NGT-YWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFR------- 121 (148)
T ss_pred chHHHHHHHHHhc--cCc-eEEEEEEEeCchhccCccccccccceeeeccccccccHHHHhcccEEcCHHHcc-------
Confidence 3699999999997 487 9999999999999999998 458999999999999999999999999887762
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecccCcccccC
Q psy16462 507 CPQPTPPVDREDERSFYYRQTYDPLHARFCDV 538 (1522)
Q Consensus 507 ~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~l 538 (1522)
+. ...+.++|||++.||..+++|+.+
T Consensus 122 -----k~-e~~g~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 122 -----DA-SNDGDDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred -----cc-cCCCCceEEEEEEEhhhcCceeec
Confidence 22 234678999999999999999875
No 34
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.70 E-value=5.1e-17 Score=171.69 Aligned_cols=128 Identities=20% Similarity=0.332 Sum_probs=96.8
Q ss_pred CceEEEEEEEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEE
Q psy16462 577 THEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVA 656 (1522)
Q Consensus 577 ~~~~y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~ 656 (1522)
++.||++++++|++|++||+|||.++ ..|.+||+|.+
T Consensus 16 ~~~~Y~s~~~~g~~y~lGD~Vlv~s~-------------------------------------------~~~~yIgkI~~ 52 (159)
T cd04715 16 DGQFYRSFTYDGVEYRLYDDVYVHNG-------------------------------------------DSEPYIGKIIK 52 (159)
T ss_pred CceEEEEEEECCEEEeCCCEEEEeCC-------------------------------------------CCCCEEEEEEE
Confidence 57799999999999999999999974 24669999999
Q ss_pred EEeccCCCCcCCCceEEEEEEeecccCCCCCcccccccCcceEEeeccc-----eeeeccceeeeEEEeecCCccccccc
Q psy16462 657 IFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEE-----EQVSLSDVQGKCFVVCEDNLQISTDR 731 (1522)
Q Consensus 657 I~~~~~~~~~~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~-----d~vpv~~I~GKC~V~~~~d~~~~~~~ 731 (1522)
||...+ +.+..+++|+|||||+||............||||+|.+. +++|+++|.|||.|++.+++..-.+.
T Consensus 53 iwe~~~----~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~~~~ 128 (159)
T cd04715 53 IYETAI----DSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDFRNPQP 128 (159)
T ss_pred EEEcCC----cCCceEEEEEeeeCHHHhccccccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHhhhCCCC
Confidence 999653 236789999999999999754332234568999999875 67899999999999999976421111
Q ss_pred -cccCCCCeEEEeeeccCCCC
Q psy16462 732 -WSSRGPHRFYFNEAYNSKTE 751 (1522)
Q Consensus 732 -~~~~~~d~Fyc~~~Yd~~~~ 751 (1522)
........|.|...||...+
T Consensus 129 s~~~~~~~~~~f~~~f~~~~~ 149 (159)
T cd04715 129 SDGIPTSADFLFPCNFDVGRC 149 (159)
T ss_pred cCCccccCcceeeeEEEecCc
Confidence 11123345666666776654
No 35
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.67 E-value=1.4e-16 Score=163.74 Aligned_cols=116 Identities=11% Similarity=0.218 Sum_probs=95.3
Q ss_pred EEEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCC
Q psy16462 584 VSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGK 663 (1522)
Q Consensus 584 ~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~ 663 (1522)
|..+|.++++||||||.|+. ++.+||+|.+||.+.+
T Consensus 1 ~~r~~~~i~vGD~V~v~~~~-------------------------------------------~~~~va~Ie~i~ed~~- 36 (130)
T cd04721 1 FCRNGVTISVHDFVYVLSEE-------------------------------------------EDRYVAYIEDLYEDKK- 36 (130)
T ss_pred CccCCEEEECCCEEEEeCCC-------------------------------------------CCcEEEEEEEEEEcCC-
Confidence 35689999999999999852 2338999999999865
Q ss_pred CCcCCCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCcccccccccc-CCCCeEEE
Q psy16462 664 KNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSS-RGPHRFYF 742 (1522)
Q Consensus 664 ~~~~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~-~~~d~Fyc 742 (1522)
+..+++|+||+||+|+.....+. ..-.||||+|++.+++|+++|.|||.|+..+++......... ...+.|+|
T Consensus 37 -----g~~~v~v~WF~~p~E~~~~~~~~-~~~~~EvFlS~~~d~i~~~~I~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C 110 (130)
T cd04721 37 -----GSKMVKVRWFHTTDEVGAALSPD-SVNPREIFLSPNLQVISVECIDGLATVLTREHYEKFQSVPKNSSELQAYFC 110 (130)
T ss_pred -----CCEEEEEEEecCHHHhccccCCC-CCCCCeEEEcCCccccchHHeeeeeEECCHHHHhhhhccccCccccccEEE
Confidence 67899999999999998765543 245899999999999999999999999999988755543332 34679999
Q ss_pred eeeccCC
Q psy16462 743 NEAYNSK 749 (1522)
Q Consensus 743 ~~~Yd~~ 749 (1522)
+..||..
T Consensus 111 ~~~~d~~ 117 (130)
T cd04721 111 YRQIDNN 117 (130)
T ss_pred EEEecCC
Confidence 9999875
No 36
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.66 E-value=1.7e-16 Score=161.54 Aligned_cols=111 Identities=22% Similarity=0.502 Sum_probs=92.6
Q ss_pred EEEecCCEEEEecCCCCCCCcEEEEEEEecccCCC--eeeEEEEEEeeecccc------cccccCCCCceEeecc--c-C
Q psy16462 411 EEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNF--KTRKCHILWFARGQET------VLEELSDPQELFLLEA--C-D 479 (1522)
Q Consensus 411 ~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G--~~k~~h~~Wf~R~~eT------vLg~~~~~~ElFlsd~--c-d 479 (1522)
.+|+|||||+|.++++ .+||||+|+.||++. +| ..+++++|||+|++|- ++|+..+++|||++++ | +
T Consensus 2 ~~i~vGd~VlI~~~d~-~~~yVAkI~~i~e~~-~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~ 79 (128)
T cd04719 2 LTIEVGDFVLIEGEDA-DGPDVARILHLYEDG-NEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDN 79 (128)
T ss_pred eEEecCCEEEEECCCC-CCCcEeeehhhhccc-cCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccC
Confidence 4799999999999988 566999999999987 66 2278999999999976 7889999999999994 5 7
Q ss_pred CccccccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCc
Q psy16462 480 DVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHA 533 (1522)
Q Consensus 480 d~~l~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~ 533 (1522)
++++++|.+||+|+..+++++|.. . .......||.+..|+....
T Consensus 80 ~i~~etI~gkc~V~~~~~y~~l~~---------~-~~~~~~~~F~r~~~~~k~~ 123 (128)
T cd04719 80 DIDAETIIGKVRVEPVEPKTDLPE---------T-KKKTGGPLFVKRYWDTKTF 123 (128)
T ss_pred cEeHHHcccEEEEEEcCCccchhh---------h-ccccCceEEEEEEeccccc
Confidence 999999999999999999966511 0 2245788899888887654
No 37
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.64 E-value=1.2e-15 Score=156.93 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=99.2
Q ss_pred cCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCc
Q psy16462 587 EGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNV 666 (1522)
Q Consensus 587 ~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~ 666 (1522)
.|..|+|||+|+|.|+.-+.. .+. |-+...|.+|++|..+|...+
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~----------------------------~~~---~~~~~~~~~i~~V~~~~e~~~---- 46 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADST----------------------------TKW---NDDHRWLPLVQFVEYMKKGSD---- 46 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCcc----------------------------ccc---cccccccceEEEEEEeeecCC----
Confidence 477899999999999751100 000 222356889999999999876
Q ss_pred CCCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeecc----ceeeeEEEeecCCccccccccccCCCCeEEE
Q psy16462 667 SASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLS----DVQGKCFVVCEDNLQISTDRWSSRGPHRFYF 742 (1522)
Q Consensus 667 ~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~----~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc 742 (1522)
+..+|.++|||||+||..+. .++.||||+|+|.+.+|++ .|.|||.|........ ...++.|||
T Consensus 47 --g~~~~h~~W~yrp~eTv~g~----~~~~~ElFLSd~c~~~~~~~~~~~I~~k~~V~~~~~~~~------~~~~~~F~r 114 (130)
T cd04712 47 --GSKMFHGRWLYRGCDTVLGN----YANERELFLTNECTCLELDLLSTEIKGVHKVDWSGTPWG------KGLPEFFVR 114 (130)
T ss_pred --CceEEEEEEEEcchhccccc----cCCCceEEEeccccccccccccceeEEEEEEEEecCcCC------cCCCCEEEE
Confidence 67899999999999999876 5789999999999999999 9999999998764421 245677777
Q ss_pred eeeccCCCCceecCC
Q psy16462 743 NEAYNSKTEEFTNLP 757 (1522)
Q Consensus 743 ~~~Yd~~~~~f~~lP 757 (1522)
...|++..+.|..||
T Consensus 115 ~syy~~e~~~F~~l~ 129 (130)
T cd04712 115 QSYYWPERGAFTSLK 129 (130)
T ss_pred EEEECccCCceEcCC
Confidence 778888999999987
No 38
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.61 E-value=1.9e-15 Score=152.33 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=93.5
Q ss_pred CeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCcC
Q psy16462 588 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 667 (1522)
Q Consensus 588 g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~~ 667 (1522)
|.+|++||+|+|.++. ..+|.+||+|..||++.+
T Consensus 1 g~~i~vGD~V~v~~~~-----------------------------------------~~~p~~I~rV~~mfe~~~----- 34 (124)
T cd04760 1 GEELEAGDCVSVKPDD-----------------------------------------PTKPLYIARVTYMWKDSI----- 34 (124)
T ss_pred CCEEecCCEEEEecCC-----------------------------------------CCCCcEEEEEhhheecCC-----
Confidence 6789999999999863 356889999999999876
Q ss_pred CCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCcc--------ccccccccCCCCe
Q psy16462 668 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQ--------ISTDRWSSRGPHR 739 (1522)
Q Consensus 668 ~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~--------~~~~~~~~~~~d~ 739 (1522)
+..+++|+|||||+||..+.. ++.+|||+|++.+.+++++|.+||.|.....-. ....+-...+...
T Consensus 35 -g~k~~h~rWf~Rg~dTVlG~~----~~~kEvFlsd~c~d~~l~~I~~Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~t 109 (124)
T cd04760 35 -GGKMFHAHWFCRGSDTVLGET----SDPLELFLVDECEDMALSSIHGKVNVIYKAPSENWSMEGGMDEEDEIFEDDGKT 109 (124)
T ss_pred -CCcEEEEEEEEECCccccccc----CCCcEEEeecccCCcchHHheeeeEEEEeCCCcchhhhcCCCCccccccCCCCe
Confidence 677999999999999998764 889999999999999999999999999987331 0011112234468
Q ss_pred EEEeeeccCCCCce
Q psy16462 740 FYFNEAYNSKTEEF 753 (1522)
Q Consensus 740 Fyc~~~Yd~~~~~f 753 (1522)
|||+.-||+...+|
T Consensus 110 ffyq~~yd~~~arf 123 (124)
T cd04760 110 FFYQKWYDPECARF 123 (124)
T ss_pred EEEEEeeChhhhcc
Confidence 99999999976554
No 39
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.61 E-value=1.3e-16 Score=163.98 Aligned_cols=96 Identities=16% Similarity=0.326 Sum_probs=83.9
Q ss_pred CceeeEEEEEEeccCCCCcCCCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCccc
Q psy16462 648 PFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQI 727 (1522)
Q Consensus 648 p~~IgrI~~I~~~~~~~~~~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~ 727 (1522)
..+||||++||... +..+|+|+||||||+|+++..+. +-.+|||+|++.+++|+++|.|||.|+..++|..
T Consensus 52 ~~~vArIekiW~~~-------G~~~~~grWy~rPEET~~gr~~~--~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k 122 (148)
T cd04718 52 DLWLARIEKLWEEN-------GTYWYAARWYTLPEETHMGRQPH--NLRRELYLTNDFADIEMECILRHCSVKCPKEFRD 122 (148)
T ss_pred chHHHHHHHHHhcc-------CceEEEEEEEeCchhccCccccc--cccceeeeccccccccHHHHhcccEEcCHHHccc
Confidence 44799999999852 57899999999999999888754 4489999999999999999999999999999964
Q ss_pred cccccccCCCCeEEEeeeccCCCCceecC
Q psy16462 728 STDRWSSRGPHRFYFNEAYNSKTEEFTNL 756 (1522)
Q Consensus 728 ~~~~~~~~~~d~Fyc~~~Yd~~~~~f~~l 756 (1522)
.. ..++|+|||++.||..+++|+++
T Consensus 123 ~e----~~g~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 123 AS----NDGDDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred cc----CCCCceEEEEEEEhhhcCceeec
Confidence 22 24789999999999999999976
No 40
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.49 E-value=8e-14 Score=150.89 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=96.7
Q ss_pred EECCEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccccc---cCC--------CCceEee
Q psy16462 407 LIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEE---LSD--------PQELFLL 475 (1522)
Q Consensus 407 ~v~g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~---~~~--------~~ElFls 475 (1522)
.-+|.+|++||+|+|.+++. .++|||.|..|+++..++. +.++++||||+.|-..++ .++ ++|||||
T Consensus 47 ~~d~~~~~vGD~Vlik~~~~-~~~~V~iI~ei~~~~~~~~-v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT 124 (179)
T cd04720 47 DSDGLELSVGDTILVKDDVA-NSPSVYLIHEIRLNTLNNE-VELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLT 124 (179)
T ss_pred ccCCeEEeCCCEEEEeCCCC-CCCEEEEEEEEEeCCCCCE-EEEEEEEcCCHHHcccccccccccchhcccCCCceEEEe
Confidence 34889999999999999876 6779999999998862355 789999999999986654 233 6999999
Q ss_pred cccCCccccccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccC
Q psy16462 476 EACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDV 538 (1522)
Q Consensus 476 d~cdd~~l~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~l 538 (1522)
++.+.++|.+|.+||+|+....+. .+... ......+|||+..|++..+.|..+
T Consensus 125 ~~~d~i~l~~Ii~k~~Vls~~ef~---~~~~~-------~~~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 125 AELSEIKLKDIIDKANVLSESEFN---DLSTD-------DKNGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred cccceEEhhheeeeEEEecHHHhh---hhccc-------ccCCCceEEEEEEEeCCCCeEccc
Confidence 999999999999999999665431 11111 123578999999999999988754
No 41
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.49 E-value=3.7e-14 Score=143.28 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=90.6
Q ss_pred CCEEEEecCCCCCCCcEEEEEEEecccCCC-----eeeEEEEEEeeeccccccccc----CCCCceEeecccCCcccccc
Q psy16462 416 GDYVMVESDDPNNPPPVGKVCYMYEDMKNF-----KTRKCHILWFARGQETVLEEL----SDPQELFLLEACDDVSLNAV 486 (1522)
Q Consensus 416 GD~V~V~~~d~~~p~~IarIe~m~e~~~~G-----~~k~~h~~Wf~R~~eTvLg~~----~~~~ElFlsd~cdd~~l~~I 486 (1522)
+|.|--..-|...|+|||||++|+-...+. ..-+++++|||||++|.-|.+ +|-+|||+|+|-+.+|+++|
T Consensus 13 ~~~~~~~~~d~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I 92 (137)
T cd04711 13 SDYIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAV 92 (137)
T ss_pred ccccccccCCCCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhc
Confidence 345544556788999999999998875222 025899999999999998764 46699999999999999999
Q ss_pred ccceEEEeecCCc-hhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCCC
Q psy16462 487 ANLCQVKHFPISE-NWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPN 540 (1522)
Q Consensus 487 ~~Kc~V~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 540 (1522)
.|||+|++...-. .+ +.-..+.++.|||.+.|+..++.|+++|.
T Consensus 93 ~GKC~V~~~~di~~s~----------~~y~~~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 93 QGRCTVEYGEDLPESV----------QEYSGGGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred cceEEEEeccccchhH----------HHHhcCCCcceEEhhhhccccCcccCCCC
Confidence 9999999765321 10 00033678999999999999999999983
No 42
>KOG1886|consensus
Probab=99.47 E-value=3.9e-14 Score=167.86 Aligned_cols=129 Identities=24% Similarity=0.434 Sum_probs=112.5
Q ss_pred ccceeeEEEECCEEEec-CCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccccc-----cCCCCce
Q psy16462 399 SKLYYKSALIGGEEVKV-GDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEE-----LSDPQEL 472 (1522)
Q Consensus 399 ~~~~Y~~~~v~g~~~~v-GD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvLg~-----~~~~~El 472 (1522)
++.+|.+..+.|..+.. ||+|++.+++++.|||||+|++||.....+. .+++++|||||+|+..+. +.++|||
T Consensus 36 k~~h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~a~~~g~~-~k~ev~W~YrPee~~~~~~~~~~a~~~rel 114 (464)
T KOG1886|consen 36 KSLHFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIYAQERGGN-VKVEVQWFYRPEESEGGGSGKWGAKQPREL 114 (464)
T ss_pred ccccccceeeccCcccccCcceeecCCCCCCCCeeEEEeeeeccccCCC-cceecccccCCCccCCCCCCCcccCCCccc
Confidence 47778888887766666 9999999999999999999999999973455 999999999999998764 3678999
Q ss_pred EeecccCCccccccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCCC
Q psy16462 473 FLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPN 540 (1522)
Q Consensus 473 Flsd~cdd~~l~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 540 (1522)
|+|.|+|++++++|+++|.|++++.+ .+++.......|+|++.||.-++.|..+-.
T Consensus 115 F~SfH~De~~A~ti~~rC~V~fvp~~------------kqlp~~~~~~~f~~r~vYd~~~~~~~~~~~ 170 (464)
T KOG1886|consen 115 FLSFHEDEAFAETILHRCKVHFVPAY------------KQLPNRVGHESFICRRVYDAVTSKLRKLRD 170 (464)
T ss_pred cccccccchhhhhhcccceeeecccc------------ccccccCCCCCcccccccccccccccCccc
Confidence 99999999999999999999999877 445566778999999999999999887764
No 43
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.41 E-value=7.9e-13 Score=143.23 Aligned_cols=125 Identities=20% Similarity=0.215 Sum_probs=96.0
Q ss_pred EEEE-cCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEecc
Q psy16462 583 CVSY-EGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKK 661 (1522)
Q Consensus 583 ~~~~-~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~ 661 (1522)
.... +|.+|++||+|.|.++. ..+++||.|.+|+...
T Consensus 44 l~R~~d~~~~~vGD~Vlik~~~------------------------------------------~~~~~V~iI~ei~~~~ 81 (179)
T cd04720 44 LARDSDGLELSVGDTILVKDDV------------------------------------------ANSPSVYLIHEIRLNT 81 (179)
T ss_pred EEEccCCeEEeCCCEEEEeCCC------------------------------------------CCCCEEEEEEEEEeCC
Confidence 4455 89999999999999864 3567899999998764
Q ss_pred CCCCcCCCceEEEEEEeecccCCCCCccccc-------ccCcceEEeeccceeeeccceeeeEEEeecCCcccccccccc
Q psy16462 662 GKKNVSASDVFLTVKKFYRPENTHRSVEFTY-------QLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSS 734 (1522)
Q Consensus 662 ~~~~~~~~~~~v~V~wfYRPeDt~~~~~~~~-------~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~ 734 (1522)
. ...+.+.|.|||||.|+........ +...||||+|.+.+.+++.+|.|||.|+..+++......-.
T Consensus 82 ~-----~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~~d~i~l~~Ii~k~~Vls~~ef~~~~~~~~- 155 (179)
T cd04720 82 L-----NNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAELSEIKLKDIIDKANVLSESEFNDLSTDDK- 155 (179)
T ss_pred C-----CCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEecccceEEhhheeeeEEEecHHHhhhhccccc-
Confidence 3 1457899999999999843222111 12379999999999999999999999998887753222211
Q ss_pred CCCCeEEEeeeccCCCCceec
Q psy16462 735 RGPHRFYFNEAYNSKTEEFTN 755 (1522)
Q Consensus 735 ~~~d~Fyc~~~Yd~~~~~f~~ 755 (1522)
.....||||..||+.++.|..
T Consensus 156 ~~~~~F~cR~~~d~~~~~F~~ 176 (179)
T cd04720 156 NGERTFFCRYACEPDGEEFVW 176 (179)
T ss_pred CCCceEEEEEEEeCCCCeEcc
Confidence 356899999999999987764
No 44
>KOG1827|consensus
Probab=99.36 E-value=1.2e-12 Score=160.64 Aligned_cols=123 Identities=22% Similarity=0.294 Sum_probs=109.3
Q ss_pred EEECCEEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecccccc--cccCCCCceEeecccCCccc
Q psy16462 406 ALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVL--EELSDPQELFLLEACDDVSL 483 (1522)
Q Consensus 406 ~~v~g~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~eTvL--g~~~~~~ElFlsd~cdd~~l 483 (1522)
+.|+|..|.+||.|||....+..+|.|++|+++|++. +|. ++..|+||+||++|++ ++.+-.+|||.+....+.++
T Consensus 184 ~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~-dg~-k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~ 261 (629)
T KOG1827|consen 184 VEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLP-DGE-KWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLV 261 (629)
T ss_pred ccccCcccccCceeeecCcccccCCceeeecccccCc-ccc-cccceeEeeCCccCccccccchhcccceecccccccHH
Confidence 8999999999999999988887888999999999999 999 9999999999999987 56688999999999999999
Q ss_pred cccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEEEEEecccCcccccCCC
Q psy16462 484 NAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPN 540 (1522)
Q Consensus 484 ~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 540 (1522)
+.|+|+|.|+....+-. .++. .....+.|.|+++|+.+...|..+..
T Consensus 262 q~l~g~c~v~~~~~yi~-------~~p~---~ls~~dv~lcesRyn~~~K~f~kirs 308 (629)
T KOG1827|consen 262 QRLLGKCYVMKPTEYIS-------GDPE---NLSEEDVFLCESRYNEQLKKFNKIRS 308 (629)
T ss_pred HHhhcceEEeehhHhhh-------cCcc---cccccceeeEEeeeccchhhhccccC
Confidence 99999999998876621 1112 23567999999999999999998876
No 45
>PF02008 zf-CXXC: CXXC zinc finger domain; InterPro: IPR002857 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain contains eight conserved cysteine residues that bind to two zinc ions. The CXXC domain is found in a variety of chromatin-associated proteins. This domain binds to non-methylated CpG dinucleotides. The domain is characterised by two CGXCXXC repeats. The RecQ helicase has a single repeat that also binds to zinc, but this has not been included in this family. The DNA binding interface has been identified by NMR []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 3SWR_A 3PTA_A 2JYI_A 2J2S_A 2KKF_A 3QMC_A 3QMB_A 3QMI_A 3QMH_A 3QMG_A ....
Probab=99.35 E-value=2.3e-13 Score=114.23 Aligned_cols=44 Identities=64% Similarity=1.432 Sum_probs=34.1
Q ss_pred CCccccccccccc-CCCCCCccccccccccCCCCccchhhhcccC
Q psy16462 300 PRKKRCGVCEACQ-QPDCGTCTACLDMVKFGGTGKAKQACIKRRC 343 (1522)
Q Consensus 300 ~~~~rc~~c~~c~-~~~cg~c~~c~~~~kf~g~~~~~~~c~~r~c 343 (1522)
.+++|||+|++|| ..|||+|.+|+||+||||||.++|.|++|+|
T Consensus 3 ~k~~rCG~C~~C~~~~DCG~C~~C~d~~k~gg~~~~kq~C~~R~C 47 (47)
T PF02008_consen 3 RKRRRCGVCEACQRTEDCGKCDFCLDRKKFGGPGRKKQKCIQRRC 47 (47)
T ss_dssp -EBBC-SSSCCHHSSS-BSSSCCHHTSCCCTS-SSS---BGGGS-
T ss_pred cccCCCCCCcCccCccCCcCCcccccCCccCCCCCcccccccCcC
Confidence 3677999999999 5559999999999999999999999999998
No 46
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.32 E-value=4e-12 Score=129.81 Aligned_cols=117 Identities=9% Similarity=0.130 Sum_probs=87.6
Q ss_pred eEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCCCcCC
Q psy16462 589 EQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSA 668 (1522)
Q Consensus 589 ~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~~~~~ 668 (1522)
..++|||||+|.++. .++.+||+|++|+...+. ..
T Consensus 2 ~~i~vGd~VlI~~~d------------------------------------------~~~~yVAkI~~i~e~~~~---~~ 36 (128)
T cd04719 2 LTIEVGDFVLIEGED------------------------------------------ADGPDVARILHLYEDGNE---DD 36 (128)
T ss_pred eEEecCCEEEEECCC------------------------------------------CCCCcEeeehhhhccccC---Cc
Confidence 469999999999864 145599999999987641 11
Q ss_pred CceEEEEEEeecccCCCCCccc--ccccCcceEEeeccce---eeeccceeeeEEEeecCCccccccccccCCCCeEEEe
Q psy16462 669 SDVFLTVKKFYRPENTHRSVEF--TYQLDLNKLYWSDEEE---QVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFN 743 (1522)
Q Consensus 669 ~~~~v~V~wfYRPeDt~~~~~~--~~~~D~rELf~S~e~d---~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~ 743 (1522)
....++|+|||||+++...... ....+.+|||++++.+ .+++++|.|||.|+..+.+.. .++........||++
T Consensus 37 ~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i~~etI~gkc~V~~~~~y~~-l~~~~~~~~~~~F~r 115 (128)
T cd04719 37 DPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDIDAETIIGKVRVEPVEPKTD-LPETKKKTGGPLFVK 115 (128)
T ss_pred ccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcEeHHHcccEEEEEEcCCccc-hhhhccccCceEEEE
Confidence 2468999999999997532211 1235789999999974 899999999999999998864 222221346889999
Q ss_pred eeccCCCC
Q psy16462 744 EAYNSKTE 751 (1522)
Q Consensus 744 ~~Yd~~~~ 751 (1522)
..+|.+..
T Consensus 116 ~~~~~k~~ 123 (128)
T cd04719 116 RYWDTKTF 123 (128)
T ss_pred EEeccccc
Confidence 99887654
No 47
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=99.31 E-value=1.5e-12 Score=153.64 Aligned_cols=56 Identities=52% Similarity=0.935 Sum_probs=49.1
Q ss_pred cccCCCCccCcHHHHHHhcCCCCCcccccCHhhHhhheecccCHHHHHHHHHHHHH
Q psy16462 1368 VLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKR 1423 (1522)
Q Consensus 1368 ~iHP~q~R~LTvREaARLQgFPD~y~F~Gs~~~~yrQIGNAVPP~la~aIg~~I~~ 1423 (1522)
.+||.+.|.||||||||||||||+|.|.|+.+++|+||||||||+|+++||++|++
T Consensus 280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f~g~~~~~~~qiGNAVpp~v~~~I~~~i~~ 335 (335)
T PF00145_consen 280 FIHPEQNRRLTPREAARLQGFPDDFKFPGSKTQQYKQIGNAVPPPVAEAIAKAIKK 335 (335)
T ss_dssp EBTTSSSCB-BHHHHHHHTTSSTTS-S-SSHHHHHHHHHCS--HHHHHHHHHHHH-
T ss_pred ccCCCCCCcCcHHHHHHhCCCCCceEccCCHHHHhceECCCcCHHHHHHHHHHhhC
Confidence 79999999999999999999999999999999999999999999999999999975
No 48
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.28 E-value=8.3e-12 Score=148.39 Aligned_cols=61 Identities=30% Similarity=0.561 Sum_probs=56.7
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchhHHHHhh
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRV 855 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~i~~~~ 855 (1522)
..+++||||||||||++||+.+| |+++||+|+|+.|++||++|||...+...||..+....
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~ 62 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEA 62 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhh
Confidence 46899999999999999999999 99999999999999999999999888899999886533
No 49
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=3.8e-11 Score=141.98 Aligned_cols=53 Identities=30% Similarity=0.531 Sum_probs=49.9
Q ss_pred EEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchhHHH
Q psy16462 798 CLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKIL 852 (1522)
Q Consensus 798 ~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~i~ 852 (1522)
+||||||+|||++||++|| ++++||+|+|+.|++||+.|||+ .++++||.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~ 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKIS 53 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhh
Confidence 5899999999999999999 99999999999999999999998 77789999874
No 50
>KOG1886|consensus
Probab=99.13 E-value=5.3e-11 Score=141.63 Aligned_cols=132 Identities=19% Similarity=0.285 Sum_probs=108.4
Q ss_pred ceEEEEEEEcCeEEEe-cCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEE
Q psy16462 578 HEYYNCVSYEGEQYKL-KSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVA 656 (1522)
Q Consensus 578 ~~~y~~~~~~g~~Y~v-gD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~ 656 (1522)
+.+|+++.+.|..|.. +|+|.+.|+. .+.|.+||+|..
T Consensus 37 ~~h~~t~~~~~g~~~~~~d~vllvped-----------------------------------------~~~pPyvaii~~ 75 (464)
T KOG1886|consen 37 SLHFETFIYRGGRYINYGDSVLLVPED-----------------------------------------PGKPPYVAIIED 75 (464)
T ss_pred cccccceeeccCcccccCcceeecCCC-----------------------------------------CCCCCeeEEEee
Confidence 6788899999999999 9999999974 367889999999
Q ss_pred EEeccCCCCcCCCceEEEEEEeecccCCCCCccccc-ccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccC
Q psy16462 657 IFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTY-QLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSR 735 (1522)
Q Consensus 657 I~~~~~~~~~~~~~~~v~V~wfYRPeDt~~~~~~~~-~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~ 735 (1522)
||....+ +.+.+.|+||||||++..+....+ ..+.|+||+|.|.|.+++.+|.++|.|.++..+... ..+.
T Consensus 76 i~a~~~g-----~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kql---p~~~ 147 (464)
T KOG1886|consen 76 IYAQERG-----GNVKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQL---PNRV 147 (464)
T ss_pred eeccccC-----CCcceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeeccccccc---cccC
Confidence 9987652 689999999999999876554333 257889999999999999999999999999877541 2223
Q ss_pred CCCeEEEeeeccCCCCceecCCc
Q psy16462 736 GPHRFYFNEAYNSKTEEFTNLPT 758 (1522)
Q Consensus 736 ~~d~Fyc~~~Yd~~~~~f~~lP~ 758 (1522)
....|+|+..||.-++.+..+-.
T Consensus 148 ~~~~f~~r~vYd~~~~~~~~~~~ 170 (464)
T KOG1886|consen 148 GHESFICRRVYDAVTSKLRKLRD 170 (464)
T ss_pred CCCCcccccccccccccccCccc
Confidence 56789999999998877666543
No 51
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.05 E-value=1.9e-10 Score=133.62 Aligned_cols=55 Identities=44% Similarity=0.797 Sum_probs=53.0
Q ss_pred cccCCCCccCcHHHHHHhcCCCCCccccc-CHhhHhhheecccCHHHHHHHHHHHH
Q psy16462 1368 VLHPEQHRVVSVRECARSQGFPDHHKFHG-TILEKHRQVGNAVPPPMGEALGREIK 1422 (1522)
Q Consensus 1368 ~iHP~q~R~LTvREaARLQgFPD~y~F~G-s~~~~yrQIGNAVPP~la~aIg~~I~ 1422 (1522)
..||.+.|.||+||+||||||||+|.|.| +.+++|+||||||||+|+++||++|.
T Consensus 219 ~~~~~~~R~lT~rE~arlqgFPd~f~f~g~~~~~~~~qiGNAVp~~~~~~I~~~i~ 274 (275)
T cd00315 219 IGKESNIRRLTPRECARLQGFPDDFEFPGKSVTQAYRQIGNSVPVPVAEAIAKAIK 274 (275)
T ss_pred cccCCCCCCCCHHHHHHHcCCCCCcEEcCCCHHHHHHhhcCCcCHHHHHHHHHHHh
Confidence 57899999999999999999999999999 99999999999999999999999986
No 52
>KOG1827|consensus
Probab=99.02 E-value=2e-10 Score=141.57 Aligned_cols=125 Identities=16% Similarity=0.257 Sum_probs=108.9
Q ss_pred EEEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCC
Q psy16462 584 VSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGK 663 (1522)
Q Consensus 584 ~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~ 663 (1522)
+..+|..|++||.||++... ......|++|..+|...+
T Consensus 184 ~~i~~~~~~~gd~vlv~~~~-----------------------------------------d~~~p~v~~Ier~w~~~d- 221 (629)
T KOG1827|consen 184 VEIDGTKYIVGDYVLVQNPA-----------------------------------------DNLKPIVAQIERLWKLPD- 221 (629)
T ss_pred ccccCcccccCceeeecCcc-----------------------------------------cccCCceeeecccccCcc-
Confidence 67899999999999999864 224558999999998877
Q ss_pred CCcCCCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccCCCCeEEEe
Q psy16462 664 KNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFN 743 (1522)
Q Consensus 664 ~~~~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~ 743 (1522)
+..++.++|||||+.|.+...+.+. .+|||.+....+++++.|+|+|+|++...+..-.++-. ...++|.|+
T Consensus 222 -----g~k~~~~~w~~rP~~T~H~a~r~F~--k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~l-s~~dv~lce 293 (629)
T KOG1827|consen 222 -----GEKWPQGCWIYRPEETVHRADRKFY--KQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENL-SEEDVFLCE 293 (629)
T ss_pred -----cccccceeEeeCCccCccccccchh--cccceecccccccHHHHhhcceEEeehhHhhhcCcccc-cccceeeEE
Confidence 8899999999999999999888877 78999999999999999999999999998876555544 466899999
Q ss_pred eeccCCCCceecCCc
Q psy16462 744 EAYNSKTEEFTNLPT 758 (1522)
Q Consensus 744 ~~Yd~~~~~f~~lP~ 758 (1522)
..|+.+.+.|.++-.
T Consensus 294 sRyn~~~K~f~kirs 308 (629)
T KOG1827|consen 294 SRYNEQLKKFNKIRS 308 (629)
T ss_pred eeeccchhhhccccC
Confidence 999999999887643
No 53
>PRK10458 DNA cytosine methylase; Provisional
Probab=98.91 E-value=9.6e-10 Score=135.15 Aligned_cols=60 Identities=28% Similarity=0.573 Sum_probs=55.4
Q ss_pred CCCCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC---CCcceEeCchhHHH
Q psy16462 792 IARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN---PGCTVFVDDCNKIL 852 (1522)
Q Consensus 792 ~~~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~---p~~~v~~~di~~i~ 852 (1522)
...++++||||||+|||++||+++| +++++|+|+|+.|++||++|| |++.++++||.++.
T Consensus 85 ~~~~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 85 PHYAFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred cCCCceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc
Confidence 4458999999999999999999999 899999999999999999999 67788999999884
No 54
>KOG3554|consensus
Probab=98.34 E-value=9.4e-08 Score=111.30 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=84.3
Q ss_pred CCceeeEEEEEEeccCCCCcCCCceEEEEEEeecccCCCCCcc-------------------------------------
Q psy16462 647 APFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVE------------------------------------- 689 (1522)
Q Consensus 647 ~p~~IgrI~~I~~~~~~~~~~~~~~~v~V~wfYRPeDt~~~~~------------------------------------- 689 (1522)
.||.|-||+++..+.+ +.+.-+|-.|||-.|+....-
T Consensus 20 ~PYliRrIEELnKTa~------GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~e~EEe~e~p~~v 93 (693)
T KOG3554|consen 20 NPYLIRRIEELNKTAN------GNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEAEIEEESECPAPV 93 (693)
T ss_pred ChHHHHHHHHHhcccc------CCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchhhhhhhccCCCcC
Confidence 4999999999987766 788999999999888652100
Q ss_pred -----cccccCcceEEeeccceeeeccceeeeEEEeecCCccccccccccCCCCeEEEeeeccCCCCceecCCcccccc
Q psy16462 690 -----FTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFL 763 (1522)
Q Consensus 690 -----~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~~~~~~~~~~~~~d~Fyc~~~Yd~~~~~f~~lP~~~r~~ 763 (1522)
..++-..+|||+|...+.+|...|+|||.|....+-. +...|. ..+|.||+...||+..++|--=.+++|+.
T Consensus 94 dlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete-~~~~YL-~~eDtFfySLVyDP~~kTLLADkGeIRVG 170 (693)
T KOG3554|consen 94 DLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETE-SLQSYL-EKEDTFFYSLVYDPNQKTLLADKGEIRVG 170 (693)
T ss_pred CCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChH-HHHhhc-cccceeEEEeeeccchhhhhccCcceeec
Confidence 0011126899999999999999999999999998653 344566 45799999999999988776556777765
No 55
>KOG3554|consensus
Probab=96.41 E-value=0.00076 Score=79.67 Aligned_cols=112 Identities=24% Similarity=0.438 Sum_probs=82.7
Q ss_pred EEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeeccc---ccc------------------------
Q psy16462 411 EEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQE---TVL------------------------ 463 (1522)
Q Consensus 411 ~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~e---TvL------------------------ 463 (1522)
..|.|||+||++....+ |-.|-|||+|-.+. +|. .-..+--|+|--| |++
T Consensus 4 n~y~vgd~vYf~~sss~-PYliRrIEELnKTa-~Gn-VeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e 80 (693)
T KOG3554|consen 4 NMYRVGDYVYFENSSSN-PYLIRRIEELNKTA-NGN-VEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATE 80 (693)
T ss_pred ccceecceEEEecCCCC-hHHHHHHHHHhccc-cCC-cceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccch
Confidence 37999999999987765 66688999999998 886 7777777887333 111
Q ss_pred ---cc----------c------CCCCceEeecccCCccccccccceEEEeecCCchhhccCCCCCCCCCCCCCCCCeEEE
Q psy16462 464 ---EE----------L------SDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYY 524 (1522)
Q Consensus 464 ---g~----------~------~~~~ElFlsd~cdd~~l~~I~~Kc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ffc 524 (1522)
.+ + --.+|||||-....+|...|.|||.|..+-.-+.. ..-+ ...+.|||
T Consensus 81 ~e~EEe~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~--------~~YL---~~eDtFfy 149 (693)
T KOG3554|consen 81 AEIEEESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESL--------QSYL---EKEDTFFY 149 (693)
T ss_pred hhhhhhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHH--------Hhhc---cccceeEE
Confidence 00 0 12489999999999999999999999987543210 0111 34689999
Q ss_pred EEEecccCcccc
Q psy16462 525 RQTYDPLHARFC 536 (1522)
Q Consensus 525 ~~~Y~~~~~~F~ 536 (1522)
.+.|||...++-
T Consensus 150 SLVyDP~~kTLL 161 (693)
T KOG3554|consen 150 SLVYDPNQKTLL 161 (693)
T ss_pred Eeeeccchhhhh
Confidence 999999877553
No 56
>KOG0919|consensus
Probab=96.01 E-value=0.0026 Score=70.65 Aligned_cols=62 Identities=24% Similarity=0.426 Sum_probs=51.6
Q ss_pred CCceEEeeecCCCcccccccccCC-eeEEEEEcCCHHHHHHHHhcCCCcceEeCchhHHHHhh
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRV 855 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~-~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~i~~~~ 855 (1522)
+++++++|++|.|||...|+.|.+ .+++.|+|+++.|.+.|..|+-...+-..||..+..+.
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~ke 64 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKE 64 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhh
Confidence 689999999999999999999875 78999999999999999999544445556777665433
No 57
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.97 E-value=0.0078 Score=60.40 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=58.1
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC------CceeccchHHHHHHhhcccccccccccCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG------CTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~------~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
.+++|+|||.|.+.+.+...| ...+.++|+|+.|++.-+.|++. ..++.+|+.++.+ .+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-------------~~- 66 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-------------PL- 66 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-------------TC-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-------------hc-
Confidence 478999999999999999988 46889999999999999999753 3456777766531 12
Q ss_pred CCCcccEEEeCCCCCccc
Q psy16462 961 RKGEVEMLCGGPPCQGFS 978 (1522)
Q Consensus 961 ~~g~vDvL~GGPPCQgFS 978 (1522)
..+.+|+|++.||.-+.+
T Consensus 67 ~~~~~D~Iv~npP~~~~~ 84 (117)
T PF13659_consen 67 PDGKFDLIVTNPPYGPRS 84 (117)
T ss_dssp TTT-EEEEEE--STTSBT
T ss_pred cCceeEEEEECCCCcccc
Confidence 246899999999986543
No 58
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.89 E-value=0.01 Score=63.99 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=51.4
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC------CCCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~------p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
.++|+|||+||-...|.+.+ ..+.|+|+|+.-++..++|- .+...+++|+.+++.. +..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~-------------~~~ 66 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR-------------LKS 66 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG-------------B--
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh-------------ccc
Confidence 47999999999999999985 57899999999999999983 1344566776665321 111
Q ss_pred CCcccEEEeCCCCCcccccc
Q psy16462 962 KGEVEMLCGGPPCQGFSGMN 981 (1522)
Q Consensus 962 ~g~vDvL~GGPPCQgFS~ag 981 (1522)
..-+|+|..+||.-|-|-..
T Consensus 67 ~~~~D~vFlSPPWGGp~Y~~ 86 (163)
T PF09445_consen 67 NKIFDVVFLSPPWGGPSYSK 86 (163)
T ss_dssp ----SEEEE---BSSGGGGG
T ss_pred cccccEEEECCCCCCccccc
Confidence 11179999999999877654
No 59
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.49 E-value=0.0074 Score=66.52 Aligned_cols=76 Identities=25% Similarity=0.354 Sum_probs=49.6
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC------CCceeccchHHHHHHhhccccccccccc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p------~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
..-++||||||.|.+++=...-|. .-+.+||.++.|+++.+.|.. .+.++..|....+.....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------- 110 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------- 110 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH----------
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc----------
Confidence 456899999999987764445565 678899999999999999953 245667776555432210
Q ss_pred CCCCCcccEEEeCCC
Q psy16462 959 LPRKGEVEMLCGGPP 973 (1522)
Q Consensus 959 lp~~g~vDvL~GGPP 973 (1522)
....+|+|..-||
T Consensus 111 --~~~~fDiIflDPP 123 (183)
T PF03602_consen 111 --KGEKFDIIFLDPP 123 (183)
T ss_dssp --CTS-EEEEEE--S
T ss_pred --cCCCceEEEECCC
Confidence 1247999999999
No 60
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.012 Score=64.33 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=55.9
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC----CCceeccchHHHHHHhhcccccccccccCCCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p----~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~ 962 (1522)
-+++||-||+|-|++|....|. +.+.|+|+|+.|.++.+.|-. +...+..|++.+ .
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-------------------~ 106 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-------------------R 106 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-------------------C
Confidence 3689999999999999999997 788999999999999999976 444455555443 3
Q ss_pred CcccEEEeCCCC
Q psy16462 963 GEVEMLCGGPPC 974 (1522)
Q Consensus 963 g~vDvL~GGPPC 974 (1522)
+.+|.++--||-
T Consensus 107 ~~~dtvimNPPF 118 (198)
T COG2263 107 GKFDTVIMNPPF 118 (198)
T ss_pred CccceEEECCCC
Confidence 568899999984
No 61
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.17 E-value=0.014 Score=65.13 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=41.4
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CC-cceEeCchhHHHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PG-CTVFVDDCNKILQ 853 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~-~~v~~~di~~i~~ 853 (1522)
.++|+|||+|.|++-+.+.+-...++|+|++|.|.+..+.|- .+ ..++++|+.+++.
T Consensus 104 ~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 104 VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 799999999999999987443678999999999999887763 22 3468899988865
No 62
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=94.96 E-value=0.025 Score=62.63 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=54.6
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC------CCceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p------~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-+++|||||.|.+++-+...|. ..+.++|.++.|++..+.|.. ++.++..|+...++...
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~------------ 116 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA------------ 116 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh------------
Confidence 45799999999999998888886 578899999999999988842 34566777654432110
Q ss_pred CCCCcccEEEeCCC
Q psy16462 960 PRKGEVEMLCGGPP 973 (1522)
Q Consensus 960 p~~g~vDvL~GGPP 973 (1522)
......|+|+--||
T Consensus 117 ~~~~~~dvv~~DPP 130 (189)
T TIGR00095 117 KKPTFDNVIYLDPP 130 (189)
T ss_pred ccCCCceEEEECcC
Confidence 00113799999998
No 63
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.89 E-value=0.026 Score=67.58 Aligned_cols=57 Identities=26% Similarity=0.448 Sum_probs=48.5
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CC-cceEeCchhHHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PG-CTVFVDDCNKILQ 853 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~-~~v~~~di~~i~~ 853 (1522)
=.++|+|||.|-|++-+.+.|... ++|+|+||.|++-++.|. -+ ...+++|++++..
T Consensus 190 E~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred CEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh
Confidence 379999999999999999999655 999999999999888885 22 4568899998854
No 64
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=94.84 E-value=0.017 Score=66.74 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=56.1
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC--CceeccchHHHHHHhhcccccccccccCCCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG--CTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 963 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~--~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g 963 (1522)
..+++|||||.|.+++.+....-...+.++|+++.|++..+.|... ..++.+|+.+.+ ... ..+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l------------~~~--~~~ 152 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL------------PTA--LRG 152 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc------------chh--cCC
Confidence 3579999999999998876531112468999999999998888532 234444442211 011 124
Q ss_pred cccEEEeCCCCCcccccc
Q psy16462 964 EVEMLCGGPPCQGFSGMN 981 (1522)
Q Consensus 964 ~vDvL~GGPPCQgFS~ag 981 (1522)
.+|+|+..|||.+.+...
T Consensus 153 ~fDlVv~NPPy~~~~~~~ 170 (251)
T TIGR03704 153 RVDILAANAPYVPTDAIA 170 (251)
T ss_pred CEeEEEECCCCCCchhhh
Confidence 799999999999877544
No 65
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.78 E-value=0.039 Score=60.70 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=55.3
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC------CCCceeccchHHHHHHhhccccccccccc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~------p~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
..-++||||||.|++++=...-|. ..+.+||.|..|..+.+.|. ..+.++..|....+. .
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~-------------~ 108 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK-------------Q 108 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH-------------h
Confidence 566899999999987664445565 66789999999999999994 345556666553332 1
Q ss_pred CCCCCcccEEEeCCCCC
Q psy16462 959 LPRKGEVEMLCGGPPCQ 975 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPCQ 975 (1522)
+.....+|+|.--||=.
T Consensus 109 ~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 109 LGTREPFDLVFLDPPYA 125 (187)
T ss_pred cCCCCcccEEEeCCCCc
Confidence 22223599999999944
No 66
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=94.68 E-value=0.03 Score=62.10 Aligned_cols=59 Identities=27% Similarity=0.304 Sum_probs=48.4
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----C-CcceEeCchhHHHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----P-GCTVFVDDCNKILQ 853 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p-~~~v~~~di~~i~~ 853 (1522)
..-.+||||||+|.|++-+...| ...+.+||.++.|++.-+.|. . ...+++.|+...+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~ 113 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALK 113 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHH
Confidence 34579999999999999998888 568999999999999888875 2 34678888876654
No 67
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.63 E-value=0.067 Score=59.82 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=50.8
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
-+++|||||.|.+++.+...|. .-+.++|+++.|++..+.|. .+..++.+|+...+. . .
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~------------~---~ 118 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA------------Q---P 118 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh------------h---c
Confidence 4799999999999985433444 46789999999999888874 234456666654321 0 1
Q ss_pred CCcccEEEeCCC
Q psy16462 962 KGEVEMLCGGPP 973 (1522)
Q Consensus 962 ~g~vDvL~GGPP 973 (1522)
.+.+|+|+--||
T Consensus 119 ~~~fDlV~~DPP 130 (199)
T PRK10909 119 GTPHNVVFVDPP 130 (199)
T ss_pred CCCceEEEECCC
Confidence 135899999999
No 68
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.60 E-value=0.052 Score=66.47 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=52.1
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhcccccccccccCCCC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~ 962 (1522)
+++|||||.|.+++.+...| .-+.++|+++.|++..+.|. .+...+.+|+..++.. ..
T Consensus 236 ~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~---------------~~ 298 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA---------------QM 298 (374)
T ss_pred EEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh---------------cC
Confidence 68999999999999888766 46889999999999888884 2344566676554210 01
Q ss_pred CcccEEEeCCC
Q psy16462 963 GEVEMLCGGPP 973 (1522)
Q Consensus 963 g~vDvL~GGPP 973 (1522)
+.+|+|+.-||
T Consensus 299 ~~~D~vi~DPP 309 (374)
T TIGR02085 299 SAPELVLVNPP 309 (374)
T ss_pred CCCCEEEECCC
Confidence 24899999999
No 69
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.56 E-value=0.21 Score=66.09 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=59.3
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-------CCceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-------GCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-------~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
.-++||||||.|++++-+..+|. ..+.++|+++.|++.-+.|.. ...++.+|+.++++.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~------------- 604 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE------------- 604 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH-------------
Confidence 34799999999999999998886 568899999999998888852 345567777665421
Q ss_pred CCCCCcccEEEeCCCCCccc
Q psy16462 959 LPRKGEVEMLCGGPPCQGFS 978 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPCQgFS 978 (1522)
+ .+.+|+|+--||.=+-|
T Consensus 605 ~--~~~fDlIilDPP~f~~~ 622 (702)
T PRK11783 605 A--REQFDLIFIDPPTFSNS 622 (702)
T ss_pred c--CCCcCEEEECCCCCCCC
Confidence 1 24699999999975543
No 70
>KOG3420|consensus
Probab=94.53 E-value=0.027 Score=58.75 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCc----eeccchHHHHHHhhcccccccccccCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCT----VFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~----~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
...+++||.||||-||.|+.+.+. +.+..+|+|+.|.+++..|--... +++.||.++ .+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl----------------e~ 110 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL----------------EL 110 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch----------------hc
Confidence 456789999999999999999997 899999999999999999953322 222222221 23
Q ss_pred CCCcccEEEeCCC
Q psy16462 961 RKGEVEMLCGGPP 973 (1522)
Q Consensus 961 ~~g~vDvL~GGPP 973 (1522)
..|-+|..+--||
T Consensus 111 ~~g~fDtaviNpp 123 (185)
T KOG3420|consen 111 KGGIFDTAVINPP 123 (185)
T ss_pred cCCeEeeEEecCC
Confidence 4578899888887
No 71
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.52 E-value=0.05 Score=65.18 Aligned_cols=57 Identities=26% Similarity=0.437 Sum_probs=47.0
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-----C-CceeccchHHHH
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----G-CTVFVDDCNKIL 943 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-----~-~~~~~~Di~~l~ 943 (1522)
.-+++|+|||.|.+|+-....|... ++|+|+||.|.+-++.|.- + ...+++|++.+.
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~ 251 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA 251 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh
Confidence 4478999999999999999999755 9999999999999998842 2 446778877763
No 72
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.52 E-value=0.027 Score=62.98 Aligned_cols=71 Identities=25% Similarity=0.385 Sum_probs=44.8
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC------CCceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p------~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.=+++|+|||.|.+++-+...+....++|+|+||.|.+..+.|-- ...++++|++.+.
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~---------------- 165 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL---------------- 165 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------------
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc----------------
Confidence 447899999999999988773333679999999999999888731 1234555655442
Q ss_pred CCCCcccEEEeCCC
Q psy16462 960 PRKGEVEMLCGGPP 973 (1522)
Q Consensus 960 p~~g~vDvL~GGPP 973 (1522)
..+.+|-++.+.|
T Consensus 166 -~~~~~drvim~lp 178 (200)
T PF02475_consen 166 -PEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEEEE--T
T ss_pred -CccccCEEEECCh
Confidence 2456777777777
No 73
>PHA03411 putative methyltransferase; Provisional
Probab=94.47 E-value=0.036 Score=64.46 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=57.1
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCccc
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVE 966 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~vD 966 (1522)
-+++|++||+|.++..+.......-+.++|+++.+++.-+.|+++..++.+|+..+. ..+.+|
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-----------------~~~kFD 128 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-----------------SNEKFD 128 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-----------------ccCCCc
Confidence 379999999999887765432113578999999999999999988888777765431 124799
Q ss_pred EEEeCCCCCccc
Q psy16462 967 MLCGGPPCQGFS 978 (1522)
Q Consensus 967 vL~GGPPCQgFS 978 (1522)
+|++.||--...
T Consensus 129 lIIsNPPF~~l~ 140 (279)
T PHA03411 129 VVISNPPFGKIN 140 (279)
T ss_pred EEEEcCCccccC
Confidence 999999966543
No 74
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.38 E-value=0.031 Score=61.65 Aligned_cols=62 Identities=29% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC------CcceEeCchhHHHHhh
Q psy16462 793 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP------GCTVFVDDCNKILQRV 855 (1522)
Q Consensus 793 ~~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p------~~~v~~~di~~i~~~~ 855 (1522)
-....+||||||.|.|++=+-.-| ..-++.||.++.|+...+.|.- ...+++.|....+...
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhh
Confidence 567889999999999976555567 7889999999999999999962 3567888887776544
No 75
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.18 E-value=0.091 Score=62.81 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=54.5
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
-+++|||||.|.+++-+...| .-+.++|+++.|++.-+.|. .+...+.+|+.++... .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---------------~ 237 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---------------Q 237 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---------------c
Confidence 479999999999999888877 36789999999999888774 2345566776554210 1
Q ss_pred CCcccEEEeCCCCCc
Q psy16462 962 KGEVEMLCGGPPCQG 976 (1522)
Q Consensus 962 ~g~vDvL~GGPPCQg 976 (1522)
.+.+|+|+--||+.|
T Consensus 238 ~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 238 GEVPDLVLVNPPRRG 252 (315)
T ss_pred CCCCeEEEECCCCCC
Confidence 235899999999543
No 76
>PHA03412 putative methyltransferase; Provisional
Probab=94.15 E-value=0.029 Score=63.87 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=54.8
Q ss_pred CCceeeeeeccCCCCcccccC----CCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS----GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a----G~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
..++||+.||.|.+++.+... .. ..+.|+|+|+.|+..-+.|.++..++..|+... +.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~-~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~-----------------~~ 111 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKP-REIVCVELNHTYYKLGKRIVPEATWINADALTT-----------------EF 111 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCC-cEEEEEECCHHHHHHHHhhccCCEEEEcchhcc-----------------cc
Confidence 458999999999999876542 22 358899999999999999998877777665321 12
Q ss_pred CCcccEEEeCCCC
Q psy16462 962 KGEVEMLCGGPPC 974 (1522)
Q Consensus 962 ~g~vDvL~GGPPC 974 (1522)
.+.+|+|++-||=
T Consensus 112 ~~~FDlIIsNPPY 124 (241)
T PHA03412 112 DTLFDMAISNPPF 124 (241)
T ss_pred cCCccEEEECCCC
Confidence 3479999999993
No 77
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=93.98 E-value=0.058 Score=66.40 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=55.8
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-------CCceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-------GCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-------~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
.-++||||||.|++++.....|. ..+.++|+++.|.+..+.|.. ...++.+|+.+++.....
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------- 289 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh----------
Confidence 45799999999999887555664 567899999999988877742 345667888776532110
Q ss_pred CCCCCcccEEEeCCCC
Q psy16462 959 LPRKGEVEMLCGGPPC 974 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPC 974 (1522)
..+.+|+|+--||+
T Consensus 290 --~~~~fDlVilDPP~ 303 (396)
T PRK15128 290 --RGEKFDVIVMDPPK 303 (396)
T ss_pred --cCCCCCEEEECCCC
Confidence 12368999999996
No 78
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.46 E-value=0.061 Score=58.95 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=49.5
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC----CcceEeCchhHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP----GCTVFVDDCNKI 851 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p----~~~v~~~di~~i 851 (1522)
+++||=||+|=|++|....| ...+.++|+|+.|.++.+.|-. +..+++.|+..+
T Consensus 48 ~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~ 105 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF 105 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc
Confidence 59999999999999999999 8999999999999999999987 567778888777
No 79
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=93.46 E-value=0.11 Score=64.83 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=65.0
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
-+++|||||.|.+++-+...+ ..+.++|+++.|++.-+.|. .++.++.+|+.+++.... . .
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~-----------~-~ 359 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP-----------W-A 359 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-----------h-c
Confidence 479999999999999887765 46789999999999888874 355667778766432110 0 1
Q ss_pred CCcccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEE
Q psy16462 962 KGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFL 1012 (1522)
Q Consensus 962 ~g~vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~Fv 1012 (1522)
.+.+|+|+-.||.-| |...+++.+..++|+-++
T Consensus 360 ~~~~D~vi~dPPr~G------------------~~~~~l~~l~~l~~~~iv 392 (431)
T TIGR00479 360 GQIPDVLLLDPPRKG------------------CAAEVLRTIIELKPERIV 392 (431)
T ss_pred CCCCCEEEECcCCCC------------------CCHHHHHHHHhcCCCEEE
Confidence 235899999999422 123445555667787554
No 80
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.36 E-value=0.058 Score=58.34 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=42.6
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC------CCcceEeCchhHHHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN------PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~------p~~~v~~~di~~i~~ 853 (1522)
.+||+|||+||=.+.|.+.+ ..+.|+|+|+.-.+--++|. .....+++|+.+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~ 62 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK 62 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh
Confidence 58999999999999999885 78999999998888777773 245678899988755
No 81
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.07 E-value=0.1 Score=57.41 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=50.3
Q ss_pred CCCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC------CCcceEeCchhHHHHhh
Q psy16462 793 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN------PGCTVFVDDCNKILQRV 855 (1522)
Q Consensus 793 ~~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~------p~~~v~~~di~~i~~~~ 855 (1522)
-.--.+||||||.|+|++=.-.-| ...+..||.|..|+.+.+.|. .++.++..|....++..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 566789999999999865555557 788999999999999999995 56677888888766544
No 82
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.63 E-value=0.34 Score=60.37 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=76.6
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhcccccccccccCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
.-+++|||||.|++++.+.... .-+.++|+++.|++.-+.|- -++....++..++.....
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~------------- 358 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW------------- 358 (432)
T ss_pred CCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-------------
Confidence 4579999999999999998554 46789999999999888873 223344455555532111
Q ss_pred CCCcccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCC--EEEEEecchhhhccchhHHHHHHHhhhhc
Q psy16462 961 RKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPR--FFLLENVRNFVAFKNSMVLKMTMRCLTQI 1038 (1522)
Q Consensus 961 ~~g~vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk--~FvmENV~g~ls~~~~~~~~~~~~~l~~~ 1038 (1522)
....+|.|+--|| +++ +-..+++.|..+.|+ +-|-=|+..| ..-+..|...
T Consensus 359 ~~~~~d~VvvDPP-----------R~G-------~~~~~lk~l~~~~p~~IvYVSCNP~Tl---------aRDl~~L~~~ 411 (432)
T COG2265 359 EGYKPDVVVVDPP-----------RAG-------ADREVLKQLAKLKPKRIVYVSCNPATL---------ARDLAILAST 411 (432)
T ss_pred ccCCCCEEEECCC-----------CCC-------CCHHHHHHHHhcCCCcEEEEeCCHHHH---------HHHHHHHHhC
Confidence 1236799999998 122 224567788888998 4445555544 3445666666
Q ss_pred cccc
Q psy16462 1039 GYQC 1042 (1522)
Q Consensus 1039 gy~~ 1042 (1522)
||.+
T Consensus 412 gy~i 415 (432)
T COG2265 412 GYEI 415 (432)
T ss_pred CeEE
Confidence 7644
No 83
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=92.51 E-value=0.11 Score=63.60 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=49.4
Q ss_pred CceEEeeecCCCccccccccc--CCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKS--GVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~a--G~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~ 853 (1522)
.+++||+|||+|-+++-+... | ...++++|+++.|++..+.|. .+..+++.|.+.++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~g-a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~ 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEG-VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR 109 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH
Confidence 589999999999999887664 6 688999999999999988875 245789999998876
No 84
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=92.14 E-value=0.11 Score=52.06 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=49.3
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCC------cceEeCchhHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPG------CTVFVDDCNKIL 852 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~------~~v~~~di~~i~ 852 (1522)
.++||+|||.|-+.+.+.+.| ...+.++|+|+.|++.-+.|++. ..++++|+.++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 63 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP 63 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch
Confidence 479999999999999999988 78999999999999998988743 467889998885
No 85
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.07 E-value=0.16 Score=56.82 Aligned_cols=57 Identities=28% Similarity=0.334 Sum_probs=44.0
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKIL 852 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~ 852 (1522)
.-++||||||+|.+++.+-..| ...+.++|+++.|++..+.|. .+..++++|+...+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 4589999999999998643334 457999999999998777774 34567888887665
No 86
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=91.53 E-value=0.13 Score=55.81 Aligned_cols=71 Identities=27% Similarity=0.399 Sum_probs=50.2
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC-----CceeccchHHHHHHhhcccccccccccCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~-----~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
.-+++||.||+|.+++.+...+-...+.++|+++.|.+.-+.|... ..++..|+. ..++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~----------------~~~~ 95 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF----------------EALP 95 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT----------------TTCC
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc----------------cccc
Confidence 4579999999999999888877643589999999999999888532 223333321 1222
Q ss_pred CCCcccEEEeCCC
Q psy16462 961 RKGEVEMLCGGPP 973 (1522)
Q Consensus 961 ~~g~vDvL~GGPP 973 (1522)
.+.+|+|+..||
T Consensus 96 -~~~fD~Iv~NPP 107 (170)
T PF05175_consen 96 -DGKFDLIVSNPP 107 (170)
T ss_dssp -TTCEEEEEE---
T ss_pred -ccceeEEEEccc
Confidence 578999999999
No 87
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=91.41 E-value=0.34 Score=56.59 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=54.4
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-++||+|||.||.+.-+.+. +-.-.++|+|+++.+.+..+.|.. +..+...|...+. .
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-------------~-- 136 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-------------A-- 136 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-------------h--
Confidence 347999999999999766442 111258899999999988887742 2334444443321 0
Q ss_pred CCCCcccEEEeCCCCCccccccc
Q psy16462 960 PRKGEVEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 960 p~~g~vDvL~GGPPCQgFS~agr 982 (1522)
..+.+|.|+--|||.+.-...+
T Consensus 137 -~~~~fD~Vl~D~Pcsg~G~~~~ 158 (264)
T TIGR00446 137 -AVPKFDAILLDAPCSGEGVIRK 158 (264)
T ss_pred -hccCCCEEEEcCCCCCCccccc
Confidence 1235999999999986655443
No 88
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=91.32 E-value=0.36 Score=60.26 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC----CceeccchHHHHHHhhcccccccccccCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG----CTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~----~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
.-+++|++||.|+.++-+...+-.-.+.|+|+++.+.+..+.|... ..++..|...+. ....
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--------------~~~~ 310 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--------------QWWD 310 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch--------------hhcc
Confidence 4479999999999998777654213688999999999998888643 223334432210 0112
Q ss_pred CCcccEEEeCCCCCcccccc
Q psy16462 962 KGEVEMLCGGPPCQGFSGMN 981 (1522)
Q Consensus 962 ~g~vDvL~GGPPCQgFS~ag 981 (1522)
.+.+|.|+-.|||-+.....
T Consensus 311 ~~~fD~Vl~D~Pcs~~G~~~ 330 (427)
T PRK10901 311 GQPFDRILLDAPCSATGVIR 330 (427)
T ss_pred cCCCCEEEECCCCCcccccc
Confidence 35699999999998754443
No 89
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=90.69 E-value=0.44 Score=59.76 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=55.3
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhcccccccccccCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
.-+++|||||.|.+++.+...+ ..+.++|+++.|++..+.|. .+...+.+|+.+.+. .++
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~-------------~~~ 362 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT-------------DQP 362 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh-------------hhh
Confidence 3579999999999999887766 46789999999999888774 244556666654321 011
Q ss_pred -CCCcccEEEeCCCCCc
Q psy16462 961 -RKGEVEMLCGGPPCQG 976 (1522)
Q Consensus 961 -~~g~vDvL~GGPPCQg 976 (1522)
..+.+|+|+--||..|
T Consensus 363 ~~~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 363 WALGGFDKVLLDPPRAG 379 (443)
T ss_pred hhcCCCCEEEECcCCcC
Confidence 1236899999999764
No 90
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=90.47 E-value=0.25 Score=60.63 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=45.1
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~ 853 (1522)
++||||||+|.+++.+...| ..++++|+++.|++.-+.|. .+..+++.|+.+++.
T Consensus 236 ~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFAT 295 (374)
T ss_pred EEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHH
Confidence 69999999999999888655 57999999999999877774 345678888877653
No 91
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=90.41 E-value=0.93 Score=42.58 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=51.7
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh-----CCCCceeccchHHHHHHhhcccccccccccCCCC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N-----~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~ 962 (1522)
+++|+.||.|+++..+...+. ..+.++|.++.+....+.+ ......+..|+.... . ...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~ 64 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP------------P---EAD 64 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc------------c---ccC
Confidence 478999999999988887443 5788999999998877622 122334444443331 0 124
Q ss_pred CcccEEEeCCCCCcc
Q psy16462 963 GEVEMLCGGPPCQGF 977 (1522)
Q Consensus 963 g~vDvL~GGPPCQgF 977 (1522)
+.+|+++..+||..+
T Consensus 65 ~~~d~i~~~~~~~~~ 79 (107)
T cd02440 65 ESFDVIISDPPLHHL 79 (107)
T ss_pred CceEEEEEccceeeh
Confidence 579999999999887
No 92
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=90.40 E-value=0.28 Score=60.54 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=45.8
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----C--CcceEeCchhHHHHh
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----P--GCTVFVDDCNKILQR 854 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p--~~~v~~~di~~i~~~ 854 (1522)
-++||||||+||+++.+...| ...+.++|+++.|.+.-+.|+ . ...++++|+.+++..
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~ 286 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRT 286 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHH
Confidence 369999999999988765556 568899999999988777664 2 346788999888754
No 93
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=90.27 E-value=0.38 Score=58.78 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=55.2
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhccccccc-ccccCCC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDD-KKQKLPR 961 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g~i~~~-~~~~lp~ 961 (1522)
+++|||||.|++++.+.... ..+.++|+++.|++..+.|. .+...+.+|+..+++.......... .+... .
T Consensus 209 ~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~-~ 285 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL-K 285 (362)
T ss_pred eEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc-c
Confidence 58999999999999777653 46899999999999988873 2455678888776543211000000 00000 0
Q ss_pred CCcccEEEeCCC
Q psy16462 962 KGEVEMLCGGPP 973 (1522)
Q Consensus 962 ~g~vDvL~GGPP 973 (1522)
...+|+|+--||
T Consensus 286 ~~~~D~v~lDPP 297 (362)
T PRK05031 286 SYNFSTIFVDPP 297 (362)
T ss_pred CCCCCEEEECCC
Confidence 124799999999
No 94
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=90.14 E-value=0.28 Score=59.83 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=46.3
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHHh
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQR 854 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~~ 854 (1522)
++||||||.|++++.+.+.. ..+.++|+++.|.+.-+.|. .+..+++.|+..+++.
T Consensus 209 ~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA 269 (362)
T ss_pred eEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 59999999999999777643 57999999999998888774 3456789999888754
No 95
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=90.11 E-value=0.26 Score=60.59 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=46.5
Q ss_pred ceEEeeecCCCcccccccc-cCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~-aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~ 853 (1522)
.++||+|||+|.+++-+.. .| ...++++|+++.|++.-+.|. .+..+++.|++.++.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~ 121 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH 121 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh
Confidence 5799999999999999855 45 567999999999999888774 344578888887754
No 96
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=90.09 E-value=0.41 Score=56.50 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=54.2
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC------CceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG------CTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~------~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
..+++|++||.|.++..+....-.-.+.++|+++.|++.-+.|... ..++.+|+.+ .+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~----------------~~ 185 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA----------------AL 185 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh----------------cc
Confidence 3579999999999998887653223578999999999988887421 2233333211 12
Q ss_pred CCCCcccEEEeCCCCCccccc
Q psy16462 960 PRKGEVEMLCGGPPCQGFSGM 980 (1522)
Q Consensus 960 p~~g~vDvL~GGPPCQgFS~a 980 (1522)
+ .+.+|+|+.-||+-+.+..
T Consensus 186 ~-~~~fD~Iv~NPPy~~~~~~ 205 (284)
T TIGR03533 186 P-GRKYDLIVSNPPYVDAEDM 205 (284)
T ss_pred C-CCCccEEEECCCCCCccch
Confidence 2 2469999999999876543
No 97
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=89.96 E-value=0.29 Score=53.04 Aligned_cols=70 Identities=29% Similarity=0.305 Sum_probs=51.5
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC---CceeccchHHHHHHhhcccccccccccCCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG---CTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~---~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~ 962 (1522)
.-+++|++||.|.++.-+...+ .-+.++|+|+.+++..+.|+.+ ..++.+|+.++ .++ .
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~---------------~~~-~ 75 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF---------------DLP-K 75 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC---------------Ccc-c
Confidence 3479999999999999888775 3588999999999999998753 44445554322 011 1
Q ss_pred CcccEEEeCCC
Q psy16462 963 GEVEMLCGGPP 973 (1522)
Q Consensus 963 g~vDvL~GGPP 973 (1522)
+..|.|++.||
T Consensus 76 ~~~d~vi~n~P 86 (169)
T smart00650 76 LQPYKVVGNLP 86 (169)
T ss_pred cCCCEEEECCC
Confidence 24799999987
No 98
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=89.83 E-value=0.93 Score=56.96 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=54.7
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCCC-----CceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p~-----~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-+++|++||.||.+.-+... +-.-.++|+|+++.+.+..+.|... ..+...|... +
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~-----------------~ 313 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS-----------------F 313 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc-----------------c
Confidence 357999999999987655431 1112588999999999888877532 2223333221 2
Q ss_pred CCCCcccEEEeCCCCCccccccc
Q psy16462 960 PRKGEVEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 960 p~~g~vDvL~GGPPCQgFS~agr 982 (1522)
+..+.+|+|+-.|||.|.....|
T Consensus 314 ~~~~~fD~Vl~D~Pcsg~g~~~r 336 (445)
T PRK14904 314 SPEEQPDAILLDAPCTGTGVLGR 336 (445)
T ss_pred ccCCCCCEEEEcCCCCCcchhhc
Confidence 22357999999999999887664
No 99
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=89.82 E-value=0.27 Score=53.71 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=53.6
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC----CCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p----~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
.-+++||.||.|.++..+...|. .+.++|+++.+.+.-+.|.. ...+...|+ .+ .+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~------------~~-----~~- 79 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDL------------FK-----GV- 79 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEccc------------cc-----cc-
Confidence 34799999999999999988875 68899999999988887742 122222221 11 11
Q ss_pred CCcccEEEeCCCCCcccc
Q psy16462 962 KGEVEMLCGGPPCQGFSG 979 (1522)
Q Consensus 962 ~g~vDvL~GGPPCQgFS~ 979 (1522)
.+.+|+|+.+||+...+.
T Consensus 80 ~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CCcccEEEECCCCCCCcc
Confidence 347999999999976654
No 100
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=89.75 E-value=0.31 Score=59.88 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=52.7
Q ss_pred CceeeeeeccCCCCccccc-CCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhcccccccccccCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~-aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
.+++|+|||+|.+++-+.. +|. ..++++|+++.|++..+.|. .+..++++|++.++..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--------------- 122 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--------------- 122 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---------------
Confidence 4799999999999988744 453 56899999999999998874 2334667777665310
Q ss_pred CCCcccEEEeCCC
Q psy16462 961 RKGEVEMLCGGPP 973 (1522)
Q Consensus 961 ~~g~vDvL~GGPP 973 (1522)
.+.+|+|.--||
T Consensus 123 -~~~fD~V~lDP~ 134 (382)
T PRK04338 123 -ERKFDVVDIDPF 134 (382)
T ss_pred -cCCCCEEEECCC
Confidence 235899999887
No 101
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=89.53 E-value=0.67 Score=58.00 Aligned_cols=84 Identities=18% Similarity=0.377 Sum_probs=56.0
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-+++|++||.||.+.-+... +-.-.+.|+|+++..++..+.|.. ++.+++.|...+. ...
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~-------------~~~ 319 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL-------------ELK 319 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc-------------ccc
Confidence 347999999999999877653 211257899999999988887742 2334445543321 000
Q ss_pred -CCCCcccEEEeCCCCCccccccc
Q psy16462 960 -PRKGEVEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 960 -p~~g~vDvL~GGPPCQgFS~agr 982 (1522)
...+.+|.|+-.+||.|.....|
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r 343 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHR 343 (434)
T ss_pred ccccccCCEEEEeCCCCccccccc
Confidence 01357999999999988554443
No 102
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=89.29 E-value=0.27 Score=59.81 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=44.1
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHHHhhcc-cccccccccCCC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDN-EVCDDKKQKLPR 961 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~~v~~g-~i~~~~~~~lp~ 961 (1522)
+++|||||+|.+|+-+...+ .-+.++|+++.|++.-+.|. .++..+..+..++...+... +.....+..+ .
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~-~ 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDL-K 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-G-G
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhh-h
Confidence 68999999999999987665 56889999999887776662 23344444443332111100 0000000011 1
Q ss_pred CCcccEEEeCCC
Q psy16462 962 KGEVEMLCGGPP 973 (1522)
Q Consensus 962 ~g~vDvL~GGPP 973 (1522)
...+|+|+--||
T Consensus 276 ~~~~d~vilDPP 287 (352)
T PF05958_consen 276 SFKFDAVILDPP 287 (352)
T ss_dssp CTTESEEEE---
T ss_pred hcCCCEEEEcCC
Confidence 126899999999
No 103
>PHA03411 putative methyltransferase; Provisional
Probab=89.20 E-value=0.41 Score=55.98 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=47.1
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchhHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKIL 852 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~i~ 852 (1522)
-++|||+||+|.+++.+........+.++|+++.+.+.-+.|+++..+++.|+..+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~ 122 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE 122 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc
Confidence 479999999999988775432124689999999999999999999899999987663
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=88.89 E-value=0.41 Score=55.19 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=55.5
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhC------CCCceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~------p~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
.-+++||.||+|.+++-+.+- .. -.+.+||+++.+++--+.|. ....++++|++.+.+.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~------------- 110 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA------------- 110 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-------------
Confidence 668999999999999988775 43 35679999998887777764 3456788888877431
Q ss_pred CCCCCcccEEEeCCC
Q psy16462 959 LPRKGEVEMLCGGPP 973 (1522)
Q Consensus 959 lp~~g~vDvL~GGPP 973 (1522)
+ ....+|+|+.-||
T Consensus 111 ~-~~~~fD~Ii~NPP 124 (248)
T COG4123 111 L-VFASFDLIICNPP 124 (248)
T ss_pred c-cccccCEEEeCCC
Confidence 1 1236999999998
No 105
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=88.67 E-value=0.39 Score=63.61 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=47.3
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC-------CcceEeCchhHHHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP-------GCTVFVDDCNKILQ 853 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p-------~~~v~~~di~~i~~ 853 (1522)
++||||||.||+++-+...| ...+.++|+++.|.+.-+.|+. ...+++.|+.++++
T Consensus 541 rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 541 DFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred eEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH
Confidence 69999999999999999888 6679999999999998887762 35678889888764
No 106
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=88.64 E-value=0.65 Score=58.25 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=55.1
Q ss_pred CceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhcccccccccccCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
-+++|++||.||.++-+... +-.-.+.|+|+++.+.+..+.|.. +..++.+|...+. ..+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-------------~~~- 317 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-------------EKF- 317 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-------------chh-
Confidence 47999999999999877653 111357899999999988887742 2233344432210 112
Q ss_pred CCCcccEEEeCCCCCccccccc
Q psy16462 961 RKGEVEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 961 ~~g~vDvL~GGPPCQgFS~agr 982 (1522)
.+.+|+|+-.|||.++....+
T Consensus 318 -~~~fD~Vl~D~Pcsg~G~~~~ 338 (444)
T PRK14902 318 -AEKFDKILVDAPCSGLGVIRR 338 (444)
T ss_pred -cccCCEEEEcCCCCCCeeecc
Confidence 257999999999988765543
No 107
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=88.35 E-value=0.39 Score=58.81 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=54.0
Q ss_pred CCceeeeeeccCCCCcccccC--CCceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS--GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a--G~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
.+++||+|||.|.+++=+... |. +-++++|+|+.|++..+.|.. +..+++.|.+.++...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~------------ 111 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV-REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR------------ 111 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh------------
Confidence 478999999999888766553 65 778999999999999988852 3457778877765310
Q ss_pred CCCCCcccEEEeCCC
Q psy16462 959 LPRKGEVEMLCGGPP 973 (1522)
Q Consensus 959 lp~~g~vDvL~GGPP 973 (1522)
...+|+|.--|+
T Consensus 112 ---~~~fDvIdlDPf 123 (374)
T TIGR00308 112 ---NRKFHVIDIDPF 123 (374)
T ss_pred ---CCCCCEEEeCCC
Confidence 125788888775
No 108
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=88.07 E-value=0.48 Score=57.68 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=44.7
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~ 853 (1522)
.+||||||.|.+++.|.+.. ..+.++|+++.|.+..+.|. .+..+++.|+.+++.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 49999999999999776653 58999999999999888875 245678888887754
No 109
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=87.40 E-value=0.57 Score=56.10 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=45.3
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKIL 852 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~ 852 (1522)
-++||||||.|.+++-+.+.| ..+.++|+++.|.+.-+.|. .+..+++.|+.++.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 579999999999999998866 47899999999988777664 34667888887764
No 110
>KOG3420|consensus
Probab=86.90 E-value=0.39 Score=50.43 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=40.4
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPG 840 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~ 840 (1522)
..+++||-||||=|++|+..-+ .+.+..+|+|+.|.+++..|--+
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeE 93 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEE 93 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHH
Confidence 3468999999999999999988 78999999999999999999643
No 111
>KOG1227|consensus
Probab=86.70 E-value=0.44 Score=55.46 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=37.6
Q ss_pred eEEeeecCCCcccc-cccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 797 RCLEVFAGAGGLSR-GLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 797 ~~ldLFaG~GGls~-Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.++|||||.|=|.+ -+-.+| ..+++|+|+|+.|.++++.|-
T Consensus 197 viVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 197 VIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNA 238 (351)
T ss_pred hhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHH
Confidence 58999999999999 556788 899999999999999999985
No 112
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=85.99 E-value=0.91 Score=56.67 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=47.6
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHHhh
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQRV 855 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~~~ 855 (1522)
..-+++|||||.|.|++.|.+. +.-+.++|+++.|.+.-+.|- -++.+..++..++....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 4457999999999999999843 468999999999988777763 34667778888886644
No 113
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=85.98 E-value=1.3 Score=53.37 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=52.0
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhcccccccccccC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
+.-+++|+|||.|++..-+...|. .+.++|+++.++..-+.|.. +..++..|... +
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~-----------------l 242 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK-----------------L 242 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc-----------------C
Confidence 345799999999998765555553 57899999999887777742 22333344322 2
Q ss_pred CC-CCcccEEEeCCCCCcccc
Q psy16462 960 PR-KGEVEMLCGGPPCQGFSG 979 (1522)
Q Consensus 960 p~-~g~vDvL~GGPPCQgFS~ 979 (1522)
|. .+.+|+|+..|||...+.
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~ 263 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTT 263 (329)
T ss_pred CcccCCCCEEEECCCCcCccc
Confidence 22 357999999999965544
No 114
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=85.87 E-value=1.3 Score=52.37 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=53.5
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC------CceeccchHHHHHHhhcccccccccccCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG------CTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~------~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
.+++|++||.|.+++.+....-..-+.++|+++.|.+.-+.|... ..++.+|+ .+ .++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~------------~~----~~~ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL------------FE----PLA 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch------------hc----cCc
Confidence 579999999999888887654323578999999999988887421 22223332 11 122
Q ss_pred CCCcccEEEeCCCCCccccc
Q psy16462 961 RKGEVEMLCGGPPCQGFSGM 980 (1522)
Q Consensus 961 ~~g~vDvL~GGPPCQgFS~a 980 (1522)
...+|+|+.-||.-+.+..
T Consensus 180 -~~~fDlIvsNPPyi~~~~~ 198 (284)
T TIGR00536 180 -GQKIDIIVSNPPYIDEEDL 198 (284)
T ss_pred -CCCccEEEECCCCCCcchh
Confidence 1269999999999877643
No 115
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=85.87 E-value=0.43 Score=56.26 Aligned_cols=78 Identities=18% Similarity=0.343 Sum_probs=55.4
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCcccE
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEM 967 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~vDv 967 (1522)
+++||++|.|-+++++...+-.-.+.|+|+++.|++.-+.|-....+ .++.. ..+++. . +..|.+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~-----~~~dlf----~--~~~~~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--VRVLV-----VQSDLF----E--PLRGKFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEE-----Eeeecc----c--ccCCceeE
Confidence 79999999999999999988644789999999999999988433221 00000 001111 1 23458999
Q ss_pred EEeCCCCCccc
Q psy16462 968 LCGGPPCQGFS 978 (1522)
Q Consensus 968 L~GGPPCQgFS 978 (1522)
|+.-||==+-+
T Consensus 180 IVsNPPYip~~ 190 (280)
T COG2890 180 IVSNPPYIPAE 190 (280)
T ss_pred EEeCCCCCCCc
Confidence 99999977776
No 116
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=85.35 E-value=0.84 Score=55.60 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=44.0
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHHHH
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQ 944 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l~~ 944 (1522)
+++|||||.|.+++.+.... ..+.++|+++.|++..+.|. .+..++.+|+.+++.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 58999999999999776654 47899999999999998884 234567788877653
No 117
>PRK14967 putative methyltransferase; Provisional
Probab=84.98 E-value=0.8 Score=51.95 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=51.8
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC----CCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p----~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
.-+++|++||.|.++.-+...|. .-+.++|+++.+.+.-+.|.. +..++..|+... + .
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~----------------~-~ 98 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA----------------V-E 98 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh----------------c-c
Confidence 35799999999999887777664 467899999999987777642 223333333211 1 2
Q ss_pred CCcccEEEeCCCCCccc
Q psy16462 962 KGEVEMLCGGPPCQGFS 978 (1522)
Q Consensus 962 ~g~vDvL~GGPPCQgFS 978 (1522)
.+.+|+|+..||-..-+
T Consensus 99 ~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 99 FRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CCCeeEEEECCCCCCCC
Confidence 35799999999854443
No 118
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=84.49 E-value=0.89 Score=54.35 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=53.5
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC------CCceeccchHHHHHHhhcccccccccccCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p------~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
.+++|++||.|.++..+....-...+.++|+++.|.+.-+.|.. ...++.+|+.+ .+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~----------------~l~ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA----------------ALP 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh----------------hCC
Confidence 47999999999998888765322357899999999999888842 12233334311 122
Q ss_pred CCCcccEEEeCCCCCcccc
Q psy16462 961 RKGEVEMLCGGPPCQGFSG 979 (1522)
Q Consensus 961 ~~g~vDvL~GGPPCQgFS~ 979 (1522)
.+.+|+|+.-||+-+...
T Consensus 199 -~~~fDlIvsNPPyi~~~~ 216 (307)
T PRK11805 199 -GRRYDLIVSNPPYVDAED 216 (307)
T ss_pred -CCCccEEEECCCCCCccc
Confidence 246999999999877543
No 119
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=84.20 E-value=0.95 Score=56.57 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=45.9
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~ 853 (1522)
-.+||||||.|.+++-|.+.+ ..+.++|+++.|.+.-+.|. .+..++++|+.+++.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLP 354 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHH
Confidence 469999999999999988755 46899999999998777764 456778899887654
No 120
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=83.74 E-value=0.71 Score=53.67 Aligned_cols=78 Identities=22% Similarity=0.386 Sum_probs=54.7
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhcccccccccccC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
+..+++|+.||.|.++..+....-...+.++|+++.|++.-+.|.. +..++..|+ . ..+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~------------~----~~~ 171 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW------------F----EPL 171 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc------------c----CcC
Confidence 4568999999999988877765422467899999999998888853 222233332 1 111
Q ss_pred CCCCcccEEEeCCCCCcccc
Q psy16462 960 PRKGEVEMLCGGPPCQGFSG 979 (1522)
Q Consensus 960 p~~g~vDvL~GGPPCQgFS~ 979 (1522)
+ .+.+|+|+..||+-+.+.
T Consensus 172 ~-~~~fD~Iv~npPy~~~~~ 190 (275)
T PRK09328 172 P-GGRFDLIVSNPPYIPEAD 190 (275)
T ss_pred C-CCceeEEEECCCcCCcch
Confidence 1 368999999999977654
No 121
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=83.67 E-value=1 Score=48.79 Aligned_cols=54 Identities=28% Similarity=0.277 Sum_probs=43.9
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC---CcceEeCchhHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP---GCTVFVDDCNKI 851 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p---~~~v~~~di~~i 851 (1522)
-++|||+||.|.++.-+.+.+ ..+.++|+++.+++..+.|+. +..++++|+..+
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~ 71 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF 71 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC
Confidence 479999999999999887765 469999999999999998874 345666666544
No 122
>KOG2730|consensus
Probab=83.66 E-value=1.1 Score=50.18 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=58.8
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----C-CCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----P-GCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p-~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
.+||-|||+||-..-|...|. .|.++|+|+--+..-++|- | ....+++|+-++.+.+.. .
T Consensus 97 ~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~------------~ 162 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA------------D 162 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh------------h
Confidence 578999999999998888885 7889999999888888884 3 344567887666543211 1
Q ss_pred CCcccEEEeCCCCCcccccc
Q psy16462 962 KGEVEMLCGGPPCQGFSGMN 981 (1522)
Q Consensus 962 ~g~vDvL~GGPPCQgFS~ag 981 (1522)
+..+|++.++||.-|=|-..
T Consensus 163 K~~~~~vf~sppwggp~y~~ 182 (263)
T KOG2730|consen 163 KIKYDCVFLSPPWGGPSYLR 182 (263)
T ss_pred hheeeeeecCCCCCCcchhh
Confidence 22489999999977766544
No 123
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=83.63 E-value=1.6 Score=54.64 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 964 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~ 964 (1522)
.-+++|++||.||.+.-+.+. + .-.++|+|+++...+..+.|.....+- ..+. ...++.... ......+.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~-----~~~~d~~~~--~~~~~~~~ 309 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAE-----TKDGDGRGP--SQWAENEQ 309 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEE-----Eeccccccc--cccccccc
Confidence 347999999999999766542 3 135889999999999988885422110 0000 001111100 00112457
Q ss_pred ccEEEeCCCCCccccccc
Q psy16462 965 VEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 965 vDvL~GGPPCQgFS~agr 982 (1522)
+|.|+-.+||.++....+
T Consensus 310 fD~VllDaPcSg~G~~~~ 327 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRR 327 (426)
T ss_pred cCEEEEcCCCCCCccccc
Confidence 999999999999987664
No 124
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=83.08 E-value=0.91 Score=52.67 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=39.1
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCC--cceEeCch
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPG--CTVFVDDC 848 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~--~~v~~~di 848 (1522)
..++||||||+|.+++.+.+..-...++++|+++.|.+.-+.|... ..+++.|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~ 142 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDL 142 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeec
Confidence 3479999999999999886532123568999999999988888532 23444444
No 125
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=82.98 E-value=0.92 Score=48.03 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=53.2
Q ss_pred CCCceeeeeeccCCCCcccc-cCCCceEEEEEcccHHHHHHHHHh-----CCCCceeccchHHHHHHhhccccccccccc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLD-KSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~-~aG~~~~v~AvE~d~~A~~ty~~N-----~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
+..++|||.||.|.+...+. ..+...-+.++|+++.+++..+.+ +++...+.+|+..+ .+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-------------~~~ 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-------------PQE 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-------------CGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-------------ccc
Confidence 46789999999999999998 433223488999999999888874 34455556665432 011
Q ss_pred CCCCCcccEEEeCCCC
Q psy16462 959 LPRKGEVEMLCGGPPC 974 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPC 974 (1522)
++ +.+|+|+...++
T Consensus 70 ~~--~~~D~I~~~~~l 83 (152)
T PF13847_consen 70 LE--EKFDIIISNGVL 83 (152)
T ss_dssp SS--TTEEEEEEESTG
T ss_pred cC--CCeeEEEEcCch
Confidence 22 689999999887
No 126
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=82.88 E-value=0.64 Score=57.02 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=44.1
Q ss_pred CCceEEeeecCCC--cccccccccCCeeEEEEEcCCHHHHHHHHhcC------C-CcceEeCchhHHHH
Q psy16462 794 RPLRCLEVFAGAG--GLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN------P-GCTVFVDDCNKILQ 853 (1522)
Q Consensus 794 ~~~~~ldLFaG~G--Gls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~------p-~~~v~~~di~~i~~ 853 (1522)
.++++||.+||+| |+.+..+-+| ..-+|++|+++.|++..+.|. . ...+.+.|.+.++.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~-~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~ 116 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAG-VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY 116 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SS-ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC
T ss_pred CCceEEeccccccHHHHHHHHHcCC-CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh
Confidence 4689999999999 5666666667 789999999999999999984 2 24677889999874
No 127
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=82.70 E-value=1.1 Score=54.75 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=36.0
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKI 851 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i 851 (1522)
.+||||||+|-|++-|...+ .-+.+||+++.|++.=+.|. .+...++.+..++
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 68999999999999986644 67999999998877555553 3445555555554
No 128
>PHA03412 putative methyltransferase; Provisional
Probab=82.53 E-value=0.99 Score=51.77 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=46.2
Q ss_pred CceEEeeecCCCcccccccccCC---eeEEEEEcCCHHHHHHHHhcCCCcceEeCchhH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGV---ARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNK 850 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~---~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~ 850 (1522)
.-++|||.||.|.|++.+.+.-. ...+.++|+|+.|++.-+.|.+...+++.|+..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~ 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALT 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc
Confidence 45899999999999987754310 236999999999999999999988888888764
No 129
>KOG1227|consensus
Probab=81.28 E-value=0.98 Score=52.75 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=37.0
Q ss_pred ceeeeeeccCCCCc-ccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 888 RCLEVFAGAGGLSR-GLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 888 ~~iDLFsG~GGls~-G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
.++|||||+|=+.+ =+-.||. +.++|+|+||.|+++++.|-
T Consensus 197 viVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 197 VIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNA 238 (351)
T ss_pred hhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHH
Confidence 57899999999999 6677886 89999999999999999984
No 130
>PRK07402 precorrin-6B methylase; Provisional
Probab=80.81 E-value=1.8 Score=47.92 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=42.0
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKI 851 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i 851 (1522)
.-++||++||.|.+++.+.+.+--..+.++|+++.+.+..+.|. .+..+++.|+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 35799999999999988865421247999999999888777764 3445666776543
No 131
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=80.60 E-value=3.6 Score=51.59 Aligned_cols=82 Identities=12% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCCC-----CceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p~-----~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-+++|+|||.||.+.-+... +-.-.+.|+|+++...+..+.|... ..+...|...+.. .
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~--------------~ 303 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE--------------Y 303 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh--------------h
Confidence 447999999999988765542 1112588999999999998888532 2233444333210 0
Q ss_pred CCCCcccEEEeCCCCCccccccc
Q psy16462 960 PRKGEVEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 960 p~~g~vDvL~GGPPCQgFS~agr 982 (1522)
..+.+|.|+--+||-++-...+
T Consensus 304 -~~~~fD~Vl~DaPCsg~G~~~~ 325 (431)
T PRK14903 304 -VQDTFDRILVDAPCTSLGTARN 325 (431)
T ss_pred -hhccCCEEEECCCCCCCccccC
Confidence 1356999999999988866543
No 132
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=79.97 E-value=1.3 Score=52.36 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=53.4
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-------CCceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-------GCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-------~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
.-++|+|||=.||+|+....+|. .-+.+||.+..|.+.-+.|+. ....+..|+-+.++.+.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~----------- 191 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK----------- 191 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH-----------
T ss_pred CCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh-----------
Confidence 45899999999999998888886 667899999998887777731 23456778877654321
Q ss_pred CCCCCcccEEEeCCCCCccc
Q psy16462 959 LPRKGEVEMLCGGPPCQGFS 978 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPCQgFS 978 (1522)
..+..|+|+--|| .|+
T Consensus 192 --~~~~fD~IIlDPP--sF~ 207 (286)
T PF10672_consen 192 --KGGRFDLIILDPP--SFA 207 (286)
T ss_dssp --HTT-EEEEEE--S--SEE
T ss_pred --cCCCCCEEEECCC--CCC
Confidence 1247999999999 665
No 133
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=78.71 E-value=1.9 Score=54.20 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=44.0
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKIL 852 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~ 852 (1522)
-++||||||.|.+++.|.+.+ ..+.++|+++.|.+.-+.|. .+..+++.|+.+.+
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 479999999999999987765 47889999999988777764 34567778876653
No 134
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=78.56 E-value=1.4 Score=54.62 Aligned_cols=72 Identities=15% Similarity=0.261 Sum_probs=48.9
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC----CceeccchHHHHHHhhcccccccccccCCCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG----CTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~----~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~ 962 (1522)
-+++||+||.|.+++.+........+.++|+++.|.+.-+.|... ..++.+|+ .+. .+|..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl------------~e~---~l~~~ 317 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSW------------FDT---DMPSE 317 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch------------hcc---ccccC
Confidence 479999999999988776532223578999999999998888432 22223332 111 12334
Q ss_pred CcccEEEeCCC
Q psy16462 963 GEVEMLCGGPP 973 (1522)
Q Consensus 963 g~vDvL~GGPP 973 (1522)
+.+|+|+.-||
T Consensus 318 ~~FDLIVSNPP 328 (423)
T PRK14966 318 GKWDIIVSNPP 328 (423)
T ss_pred CCccEEEECCC
Confidence 57999999998
No 135
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=78.26 E-value=1.3 Score=50.63 Aligned_cols=78 Identities=23% Similarity=0.409 Sum_probs=53.8
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhcccccccccccCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
..+++|+.||.|.++.-+....-...+.++|+++.+.+.-+.|.. +..++.+|+.. .++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----------------~~~ 151 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE----------------PLP 151 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc----------------cCc
Confidence 357999999999988877765222367899999999988777642 22333333211 121
Q ss_pred CCCcccEEEeCCCCCccccc
Q psy16462 961 RKGEVEMLCGGPPCQGFSGM 980 (1522)
Q Consensus 961 ~~g~vDvL~GGPPCQgFS~a 980 (1522)
.+.+|+|+..||+...+..
T Consensus 152 -~~~fD~Vi~npPy~~~~~~ 170 (251)
T TIGR03534 152 -GGKFDLIVSNPPYIPEADI 170 (251)
T ss_pred -CCceeEEEECCCCCchhhh
Confidence 3579999999998876643
No 136
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=77.70 E-value=2.7 Score=44.45 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCceEEeeecCCCccccccc-ccCCeeEEEEEcCCHHHHHHHHh-----cCCCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLD-KSGVARSTWAIEFDSAAAAAFKM-----NNPGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~-~aG~~~~~~ave~d~~A~~ty~~-----N~p~~~v~~~di~~i 851 (1522)
+..++|||-||.|-+...|. +.+--..++++|+++.+++..+. ++++..+++.|+.++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l 66 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL 66 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc
Confidence 46789999999999999998 43323459999999988886666 345677788888774
No 137
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=77.06 E-value=1.6 Score=51.32 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=51.8
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC--CCCceeccchHHHHHHhhcccccccccccCCCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN--PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 963 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~--p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g 963 (1522)
.-+++|+-||.|.++..+...+. -+.|+|+|+.+++..+.|+ ++..++.+|+..+. ++..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~---------------~~~~- 104 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVD---------------LSEL- 104 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCC---------------HHHc-
Confidence 45799999999999999988874 5789999999999998887 45555666644320 1100
Q ss_pred cccEEEeCCC
Q psy16462 964 EVEMLCGGPP 973 (1522)
Q Consensus 964 ~vDvL~GGPP 973 (1522)
..+.|+|.||
T Consensus 105 ~~~~vv~NlP 114 (272)
T PRK00274 105 QPLKVVANLP 114 (272)
T ss_pred CcceEEEeCC
Confidence 1488999998
No 138
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=75.68 E-value=2.1 Score=49.88 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC---CCceeccchHHHHHHhhcccccccccccCCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP---GCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p---~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~ 962 (1522)
.-+++|+.||.|.++..+.+.+. -+.++|+|+.+++..+.++. +..++.+|+.. ++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~-----------------~~~- 89 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALK-----------------VDL- 89 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhccCCCEEEEEecccc-----------------CCc-
Confidence 45799999999999999988863 57899999999998888754 34444555322 111
Q ss_pred CcccEEEeCCC
Q psy16462 963 GEVEMLCGGPP 973 (1522)
Q Consensus 963 g~vDvL~GGPP 973 (1522)
.++|.|+|.+|
T Consensus 90 ~~~d~Vv~NlP 100 (258)
T PRK14896 90 PEFNKVVSNLP 100 (258)
T ss_pred hhceEEEEcCC
Confidence 14699999999
No 139
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=74.99 E-value=1.7 Score=47.81 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=58.4
Q ss_pred CCceeeeeeccCCCCccc--ccCCCc-------eEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGL--DKSGVA-------RSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKK 956 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~--~~aG~~-------~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~ 956 (1522)
.-.++|-|||.|++-+=. ..+... ..++++|+++.++..-+.|...+.+ ...| ++...+.
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-~~~i----------~~~~~D~ 97 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-EDYI----------DFIQWDA 97 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGE----------EEEE--G
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-CCce----------EEEecch
Confidence 457899999999876422 122221 0278999999999998888532221 0000 0001111
Q ss_pred ccCC-CCCcccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHh-hCCCEEE
Q psy16462 957 QKLP-RKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDY-YRPRFFL 1012 (1522)
Q Consensus 957 ~~lp-~~g~vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~-~rPk~Fv 1012 (1522)
..+| ..+.+|+|+.-||= |++ -+.......|+..+++.+.. ++|..++
T Consensus 98 ~~l~~~~~~~d~IvtnPPy------G~r--~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPY------GRR--LGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp GGGGGTTSBSCEEEEE--S------TTS--HCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred hhcccccCCCCEEEECcch------hhh--ccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 2233 45689999999993 321 11112235688888877766 6775443
No 140
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=74.25 E-value=2.8 Score=50.87 Aligned_cols=68 Identities=25% Similarity=0.330 Sum_probs=46.1
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC----CceeccchHHHHHHhhcccccccccccCCCCC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG----CTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 963 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~----~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g 963 (1522)
+++||.||.|.++.-+...+-...+.++|+++.|.+.-+.|... ..++..|+ .. . ..+
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~------------~~----~--~~~ 260 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNV------------FS----D--IKG 260 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc------------cc----c--cCC
Confidence 69999999999988777653212478999999988877665422 22222221 11 1 235
Q ss_pred cccEEEeCCC
Q psy16462 964 EVEMLCGGPP 973 (1522)
Q Consensus 964 ~vDvL~GGPP 973 (1522)
.+|+|+..||
T Consensus 261 ~fDlIvsNPP 270 (342)
T PRK09489 261 RFDMIISNPP 270 (342)
T ss_pred CccEEEECCC
Confidence 7999999998
No 141
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=74.09 E-value=2.4 Score=41.91 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=49.9
Q ss_pred CceeeeeeccCCCCccccc--CCCceEEEEEcccHHHHHHHHHhC------CCCceeccchHHHHHHhhccccccccccc
Q psy16462 887 LRCLEVFAGAGGLSRGLDK--SGVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~--aG~~~~v~AvE~d~~A~~ty~~N~------p~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
-+++||=||.|.++.-+.+ .|. + +.++|+++.+.+..+.|. ++..++.+|+ .. .
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~-~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~---------------~ 64 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA-R-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF---------------D 64 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS-E-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG---------------G
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC-E-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc---------------C
Confidence 4789999999999999988 665 4 889999999999998887 3444555555 11 1
Q ss_pred CCCCCcccEEEeCC
Q psy16462 959 LPRKGEVEMLCGGP 972 (1522)
Q Consensus 959 lp~~g~vDvL~GGP 972 (1522)
....+.+|+++...
T Consensus 65 ~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 65 PDFLEPFDLVICSG 78 (112)
T ss_dssp TTTSSCEEEEEECS
T ss_pred cccCCCCCEEEECC
Confidence 11234689888765
No 142
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=74.08 E-value=2.8 Score=45.57 Aligned_cols=45 Identities=27% Similarity=0.305 Sum_probs=38.6
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
..-++|||-||+|-+++-+.+.+.-..+.++|+++.|.+.-+.|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~ 75 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNA 75 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHH
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 556799999999999999988775446999999999999887775
No 143
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=73.58 E-value=4.9 Score=37.59 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=32.3
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFK 835 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~ 835 (1522)
+++|+.||.|+++..+.+.+ ...++++|+++.+....+
T Consensus 1 ~ildig~G~G~~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALASGP-GARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC-CCEEEEEeCCHHHHHHHH
Confidence 47999999999999888744 568899999998888766
No 144
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=73.15 E-value=2.5 Score=48.98 Aligned_cols=52 Identities=27% Similarity=0.208 Sum_probs=42.1
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC---CCceeccch
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP---GCTVFVDDC 939 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p---~~~~~~~Di 939 (1522)
.-+++|+.||.|.++..+.+.+. .+.++|+|+.+++..+.+++ +..+..+|+
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~ 84 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDA 84 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECch
Confidence 45799999999999999998874 48899999999999888863 444555554
No 145
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=73.14 E-value=3.5 Score=50.82 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=60.9
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-------CCceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-------GCTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-------~~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
.-++|+|||=.||+|.-...+|. .-+.+||.+..|...-+.|+- ....+.+|+-++++....
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~---------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER---------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh----------
Confidence 34699999999999999999997 567799999999988888852 245678888887654321
Q ss_pred CCCCCcccEEEeCCCCCcccc
Q psy16462 959 LPRKGEVEMLCGGPPCQGFSG 979 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPCQgFS~ 979 (1522)
.....|||+--|| .|+.
T Consensus 287 --~g~~fDlIilDPP--sF~r 303 (393)
T COG1092 287 --RGEKFDLIILDPP--SFAR 303 (393)
T ss_pred --cCCcccEEEECCc--cccc
Confidence 1237999999999 4543
No 146
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=72.50 E-value=2.4 Score=52.10 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=34.0
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
+++||.||.|-+++.+...+-.-.+.++|.++.|++.-+.|.
T Consensus 231 ~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred eEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 799999999999888776542235789999999988887764
No 147
>KOG2904|consensus
Probab=72.49 E-value=4 Score=47.40 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=50.7
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC------CceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG------CTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~------~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
+..++|+++|.|.+|+++...--...+.|+|.++.|...-..|--. ..+++.+ +.++..+. ..+
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~--------me~d~~~~--~~l 218 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNI--------MESDASDE--HPL 218 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecc--------cccccccc--ccc
Confidence 4468999999999999876532235788999999999998888422 1111111 11221111 112
Q ss_pred CCCCcccEEEeCCCC
Q psy16462 960 PRKGEVEMLCGGPPC 974 (1522)
Q Consensus 960 p~~g~vDvL~GGPPC 974 (1522)
.-|..|+|++-||=
T Consensus 219 -~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 219 -LEGKIDLLVSNPPY 232 (328)
T ss_pred -ccCceeEEecCCCc
Confidence 23789999999994
No 148
>PRK03612 spermidine synthase; Provisional
Probab=72.34 E-value=28 Score=44.84 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=54.2
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC------------CCCceeccchHHHHHHhhcccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN------------PGCTVFVDDCNKILQRVIDNEVCD 953 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~------------p~~~~~~~Di~~l~~~v~~g~i~~ 953 (1522)
.-+++++-+|.|++..-+...+-.+-+.++|+|+..++..+.|+ |+..++.+|....+..
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-------- 369 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-------- 369 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--------
Confidence 45799999999998877665443367889999999999988742 4566677777665421
Q ss_pred cccccCCCCCcccEEEeCCCC
Q psy16462 954 DKKQKLPRKGEVEMLCGGPPC 974 (1522)
Q Consensus 954 ~~~~~lp~~g~vDvL~GGPPC 974 (1522)
..+..|+|+..+|-
T Consensus 370 -------~~~~fDvIi~D~~~ 383 (521)
T PRK03612 370 -------LAEKFDVIIVDLPD 383 (521)
T ss_pred -------CCCCCCEEEEeCCC
Confidence 12478999998764
No 149
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=71.54 E-value=3.6 Score=48.05 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=40.1
Q ss_pred ceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKI 851 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i 851 (1522)
-++||++||.||.++-+.+. +---.++|+|+++...+..+.|. .+..+.+.|...+
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~ 134 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF 134 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh
Confidence 46999999999999877542 11126999999999888777765 3345566665544
No 150
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=71.44 E-value=10 Score=43.68 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 964 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~ 964 (1522)
+.-++||+-||.|.++.-+....-...+.++|+++.+++..+.+.++...+..|+..+ +..+.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~-----------------~~~~~ 93 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASW-----------------QPPQA 93 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc-----------------CCCCC
Confidence 3458999999999998777654212457899999999999998888777666665432 12347
Q ss_pred ccEEEeCCCCC
Q psy16462 965 VEMLCGGPPCQ 975 (1522)
Q Consensus 965 vDvL~GGPPCQ 975 (1522)
+|+|+.....+
T Consensus 94 fD~v~~~~~l~ 104 (258)
T PRK01683 94 LDLIFANASLQ 104 (258)
T ss_pred ccEEEEccChh
Confidence 89999876443
No 151
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=71.26 E-value=4.4 Score=40.06 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=42.3
Q ss_pred ceEEeeecCCCcccccccc--cCCeeEEEEEcCCHHHHHHHHhcC------CCcceEeCch
Q psy16462 796 LRCLEVFAGAGGLSRGLDK--SGVARSTWAIEFDSAAAAAFKMNN------PGCTVFVDDC 848 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~--aG~~~~~~ave~d~~A~~ty~~N~------p~~~v~~~di 848 (1522)
-++|||=||.|.+++-+.+ .| . .+.++|+++.+.+..+.|. +...+++.|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~-~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPG-A-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTT-S-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCC-C-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 4789999999999999988 55 4 4999999999888888876 4556677777
No 152
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=69.71 E-value=5 Score=47.55 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=45.7
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----C--CcceEeCchhHHHHhh
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----P--GCTVFVDDCNKILQRV 855 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p--~~~v~~~di~~i~~~~ 855 (1522)
-++|||||=.||+|+-....| ..-+.+||.++.|.+.-+.|+ . ....+..|+.+.++..
T Consensus 125 krvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHH
Confidence 489999999999999988888 778999999999888777664 2 3456789999887753
No 153
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=69.38 E-value=8.4 Score=43.12 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=51.6
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccch-HHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDC-NKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di-~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-++||+.||.|.++..+....-...+.++|+++.+++.-+.|. ++..++..|+ ..+. ..+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-------------~~~ 107 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-------------DMF 107 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-------------HHc
Confidence 45799999999999888765422235889999999888777653 4455666776 3331 012
Q ss_pred CCCCcccEEEeCCCCC
Q psy16462 960 PRKGEVEMLCGGPPCQ 975 (1522)
Q Consensus 960 p~~g~vDvL~GGPPCQ 975 (1522)
..+.+|+|+..+|-+
T Consensus 108 -~~~~~D~V~~~~~~p 122 (202)
T PRK00121 108 -PDGSLDRIYLNFPDP 122 (202)
T ss_pred -CccccceEEEECCCC
Confidence 235789998776544
No 154
>PRK01581 speE spermidine synthase; Validated
Probab=68.76 E-value=1e+02 Score=38.08 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=47.4
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh------------CCCCceeccchHHHHHHhhcccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN------------NPGCTVFVDDCNKILQRVIDNEVCD 953 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N------------~p~~~~~~~Di~~l~~~v~~g~i~~ 953 (1522)
.-+++++=+|.|++...+....-..-+.+||+|+..++.-+.. .|...+..+|...++..
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-------- 222 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-------- 222 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--------
Confidence 3478888777666544444332235678999999988876641 24556667777665421
Q ss_pred cccccCCCCCcccEEEeCCC
Q psy16462 954 DKKQKLPRKGEVEMLCGGPP 973 (1522)
Q Consensus 954 ~~~~~lp~~g~vDvL~GGPP 973 (1522)
..+..|+|+..+|
T Consensus 223 -------~~~~YDVIIvDl~ 235 (374)
T PRK01581 223 -------PSSLYDVIIIDFP 235 (374)
T ss_pred -------cCCCccEEEEcCC
Confidence 1246899999865
No 155
>PRK14967 putative methyltransferase; Provisional
Probab=68.58 E-value=4.3 Score=46.02 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=40.4
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC----CcceEeCchhH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP----GCTVFVDDCNK 850 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p----~~~v~~~di~~ 850 (1522)
-++||++||.|.++.-+.+.| ...+.++|+++.+.+.-+.|.. ...+++.|+..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~ 95 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR 95 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh
Confidence 479999999999998887777 5578999999988876666542 23455555543
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=68.17 E-value=4.4 Score=47.61 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=46.2
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC--CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN--PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~--p~~~v~~~di~~i 851 (1522)
..-.+||+-||.|.++.-+.+.+ . .+.|+|+|+.+.+..+.|+ ++..++++|+..+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~-~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~ 99 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA-A-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV 99 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC-C-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence 44579999999999999998887 3 7899999999999888887 4566777776654
No 157
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=67.71 E-value=6.6 Score=43.35 Aligned_cols=69 Identities=7% Similarity=0.061 Sum_probs=45.1
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh-----CCCCceeccchHHHHHHhhcccccccccccCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N-----~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
..+++|+-||.|.++.-+...+-..-+.++|.++.+++..+.| .++..++.+|+.++ +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-----------------~ 105 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-----------------Q 105 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-----------------c
Confidence 5689999999998888765543223478999999877655544 23344455554332 1
Q ss_pred CCCcccEEEeC
Q psy16462 961 RKGEVEMLCGG 971 (1522)
Q Consensus 961 ~~g~vDvL~GG 971 (1522)
..+.+|+|+..
T Consensus 106 ~~~~fD~I~s~ 116 (181)
T TIGR00138 106 HEEQFDVITSR 116 (181)
T ss_pred ccCCccEEEeh
Confidence 23578988864
No 158
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=67.58 E-value=4.8 Score=51.56 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=49.9
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCCC------CceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPG------CTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p~------~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
..+++|++||.|.++..+... .. -.+.++|+++.|++.-+.|... ..++.+|+. + .
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~------------~----~ 201 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWF------------E----N 201 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchh------------h----h
Confidence 357999999999988876543 21 2578999999999998888421 222233321 1 1
Q ss_pred CCCCCcccEEEeCCCCCccc
Q psy16462 959 LPRKGEVEMLCGGPPCQGFS 978 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPCQgFS 978 (1522)
++ .+.+|+|+..||=-+.+
T Consensus 202 ~~-~~~fDlIvsNPPYi~~~ 220 (506)
T PRK01544 202 IE-KQKFDFIVSNPPYISHS 220 (506)
T ss_pred Cc-CCCccEEEECCCCCCch
Confidence 22 34799999999854443
No 159
>PRK14968 putative methyltransferase; Provisional
Probab=67.05 E-value=4.5 Score=43.91 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=49.6
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC-------CceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG-------CTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~-------~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
.-+++|+.||.|.++..+...| ..+.++|+++.+....+.|... ...+..|. . ..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~------------~----~~ 85 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL------------F----EP 85 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc------------c----cc
Confidence 3479999999999998887776 3567999999998888776421 22222221 1 11
Q ss_pred CCCCCcccEEEeCCCCCc
Q psy16462 959 LPRKGEVEMLCGGPPCQG 976 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPCQg 976 (1522)
++ .+.+|+|+..||.-.
T Consensus 86 ~~-~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 86 FR-GDKFDVILFNPPYLP 102 (188)
T ss_pred cc-ccCceEEEECCCcCC
Confidence 22 237999999999643
No 160
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=67.04 E-value=6.9 Score=43.56 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=40.2
Q ss_pred CCceEEeeecCCCcccccccc-cCCeeEEEEEcCCHHHHHHHHhcC------CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAAAAFKMNN------PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~-aG~~~~~~ave~d~~A~~ty~~N~------p~~~v~~~di~~i 851 (1522)
..-.++||.||+|.+++-+.. .+....+.++|+++.+.+.-+.|. .+..+++.|..++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 345799999999999988754 332347999999998887655552 2334455555443
No 161
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=66.49 E-value=5.9 Score=43.55 Aligned_cols=45 Identities=27% Similarity=0.176 Sum_probs=35.7
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
+.-++||+.||.|.++..+...+-..-+.++|+++.+++..+.|.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR 75 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 345899999999999988876542235789999999988887764
No 162
>KOG2187|consensus
Probab=65.83 E-value=10 Score=47.75 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=33.5
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N 928 (1522)
+-.++|+|||.|.+++.+++.- ..+..+|+++.|+.--+.|
T Consensus 384 ~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~n 424 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKN 424 (534)
T ss_pred CcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhc
Confidence 3467999999999998886642 5788999999998877776
No 163
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=65.47 E-value=5.5 Score=46.18 Aligned_cols=56 Identities=27% Similarity=0.236 Sum_probs=44.5
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC---CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN---PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~---p~~~v~~~di~~i 851 (1522)
+.-.+||+.||.|.++.-+.+.+ ..+.++|+|+.+++..+.++ ++..++++|+..+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence 45689999999999999998877 34999999999999888876 3445666666443
No 164
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=65.30 E-value=6 Score=44.28 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=43.4
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCch-hHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDC-NKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di-~~i 851 (1522)
..-.+|||-||.|.++..+.+..-...++++|+++.+++.-+.|. ++..+++.|+ ..+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l 103 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL 103 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH
Confidence 456899999999999998865432346999999998877665543 4566788888 443
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=65.21 E-value=6 Score=47.14 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=50.0
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC------CCCceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~------p~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-+++|+-||.|.++.-+...+. -+.|+|+|+.++...+.|+ ++..++.+|+... .+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~---------------~~ 99 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT---------------EF 99 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh---------------cc
Confidence 44789999999999887777653 4789999999999887764 3445666665332 11
Q ss_pred CCCCcccEEEeCCC
Q psy16462 960 PRKGEVEMLCGGPP 973 (1522)
Q Consensus 960 p~~g~vDvL~GGPP 973 (1522)
..+|++++.+|
T Consensus 100 ---~~~d~VvaNlP 110 (294)
T PTZ00338 100 ---PYFDVCVANVP 110 (294)
T ss_pred ---cccCEEEecCC
Confidence 24689999888
No 166
>PLN02672 methionine S-methyltransferase
Probab=63.95 E-value=5 Score=55.27 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
..+++||.||.|-+++.+...+-...+.|+|+++.|++.-+.|-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 34799999999999998876543236889999999999998884
No 167
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.34 E-value=8.4 Score=46.72 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=45.3
Q ss_pred CceEEeeecCCCcccccccc-cCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHHh
Q psy16462 795 PLRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQR 854 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~-aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~~ 854 (1522)
...++|-|||.|-=.+-+.. ++ ...++++|+++.|+++-+.|. -+..+++.|.+.++..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~ 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh
Confidence 67899999999954444433 33 338999999999999988875 2456788899999774
No 168
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=63.20 E-value=4.7 Score=50.49 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=41.8
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCC----cceEeCchhH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPG----CTVFVDDCNK 850 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~----~~v~~~di~~ 850 (1522)
.-++|||+||.||+++-+.+.+--..++|+|+++.+.+..+.|... ..+++.|+..
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~ 304 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD 304 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc
Confidence 3479999999999998887654124799999999998888877632 3455556554
No 169
>PRK07402 precorrin-6B methylase; Provisional
Probab=63.18 E-value=5.2 Score=44.36 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=39.5
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchH
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCN 940 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~ 940 (1522)
+.-+++|++||.|.++..+...+-..-+.++|+++.+++..+.|. .+..++.+|+.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~ 100 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAP 100 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchH
Confidence 345789999999999887764321135789999999999888774 23344455543
No 170
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=62.57 E-value=5.3 Score=47.53 Aligned_cols=42 Identities=36% Similarity=0.403 Sum_probs=37.9
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
-++||+=||.|=|+++..+.| ...+.|+|+|+.|.++=+.|.
T Consensus 163 ~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENA 204 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHH
Confidence 499999999999999999999 788999999999999888874
No 171
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=62.36 E-value=6.6 Score=46.48 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=35.4
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.+++||+||.|.+++.+.+..---.+.++|+++.|.+.-+.|.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 4799999999999999877532236899999999998777774
No 172
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=61.95 E-value=8 Score=43.50 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=44.2
Q ss_pred CceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchh
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCN 849 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~ 849 (1522)
.-++||+=||.|-+...|.+. + ...+.++|+++.|.+.-+.++++..+.+.|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~ 98 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLF 98 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeecc
Confidence 346999999999999999775 3 35799999999999999999887766665543
No 173
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=61.93 E-value=9.5 Score=42.08 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=39.7
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhc-----CCCcceEeCchhHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN-----NPGCTVFVDDCNKI 851 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N-----~p~~~v~~~di~~i 851 (1522)
..++||+-||.|-+++-+...+.-..+.++|.++.+.+..+.| .++..++++|+.++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~ 104 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF 104 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc
Confidence 4689999999999888776544223589999999766544433 34456667776654
No 174
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=61.84 E-value=7 Score=47.16 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=38.9
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i 851 (1522)
+.-.+||+|||.|++.+-+...| ..+.++|+++.+...-+.|. ++..+++.|+..+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l 242 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL 242 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC
Confidence 34579999999999976555555 36789999998877656554 2334555665543
No 175
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=61.79 E-value=8.5 Score=42.83 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=33.6
Q ss_pred CCCceeeeeeccCCCCccccc-CCCceEEEEEcccHHHHHHHHHh
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~-aG~~~~v~AvE~d~~A~~ty~~N 928 (1522)
+.-+++|++||.|.++..+.. .|-...+.++|+++.+++.-+.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 455899999999999887644 33224688999999998876655
No 176
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=61.41 E-value=4.2 Score=52.20 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=51.6
Q ss_pred CCCceeeeeeccCCCCcccccC--------CCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhccccccccc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKS--------GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKK 956 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~a--------G~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~ 956 (1522)
...+++|.+||+|++..++... +....++++|+|+.|+...+.|......+ +++ +..++......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~--~~~-----i~~~d~l~~~~ 103 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL--EIN-----VINFNSLSYVL 103 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC--Cce-----eeecccccccc
Confidence 3568999999999998877542 12245789999999999888874322100 110 01111000000
Q ss_pred ccC-CCCCcccEEEeCCCCCccc
Q psy16462 957 QKL-PRKGEVEMLCGGPPCQGFS 978 (1522)
Q Consensus 957 ~~l-p~~g~vDvL~GGPPCQgFS 978 (1522)
... ...+.+|+|+|-||=-...
T Consensus 104 ~~~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 104 LNIESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred cccccccCcccEEEeCCCccccC
Confidence 000 1235799999999966554
No 177
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=61.38 E-value=17 Score=41.74 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=49.3
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCcc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEV 965 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~v 965 (1522)
.-+++|+-||.|.++.-+...|. .+.++|+++.+++..+.+.+....+..|+..+ .+ ..+.+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~---------------~~-~~~~f 104 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDAADHYLAGDIESL---------------PL-ATATF 104 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCCEEEcCcccC---------------cC-CCCcE
Confidence 34799999999988877766663 57899999999999888876544445554321 11 23479
Q ss_pred cEEEeCC
Q psy16462 966 EMLCGGP 972 (1522)
Q Consensus 966 DvL~GGP 972 (1522)
|+|+...
T Consensus 105 D~V~s~~ 111 (251)
T PRK10258 105 DLAWSNL 111 (251)
T ss_pred EEEEECc
Confidence 9998654
No 178
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=61.32 E-value=6.9 Score=42.71 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=36.0
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
-++|||.||.|.++..+...|. .+.++|+++.+.+.-+.|.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~ 61 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENA 61 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHH
Confidence 4699999999999999998883 7999999999988777765
No 179
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=61.28 E-value=10 Score=37.95 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=32.8
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhc
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN 837 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N 837 (1522)
-+++||.||.|.++.-+.+...-..++++|+++.+.+.-+.|
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 62 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN 62 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH
Confidence 489999999999998776642124689999999988765554
No 180
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=61.01 E-value=7.8 Score=46.10 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=39.7
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
+..++||+=||.|-||.+....|. ..+.|+|+|+.|.++-+.|.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa 205 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENA 205 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHH
Confidence 466899999999999999999997 77889999999999988884
No 181
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=60.76 E-value=6.3 Score=46.68 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=37.6
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.-++||+.||.|.+++.+.+.| ...+.++|+++.|.+.-+.|.
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~ 202 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNA 202 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHH
Confidence 4689999999999999988888 578999999999988777774
No 182
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=60.74 E-value=7.8 Score=43.61 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=41.7
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCCCCceeccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDD 938 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~D 938 (1522)
.-++||+=||.|-+...+... +. ..+.++|+++.+++..+.++++..+..+|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~~~~~~~~~d 96 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYLPNINIIQGS 96 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhCCCCcEEEee
Confidence 447999999999998888765 33 35889999999999999988876655544
No 183
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=60.62 E-value=6.1 Score=46.72 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=37.9
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
+++||.||+|-+++++...+..-.++|+|+++.|.+.=+.|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA 154 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence 899999999999999999884558999999999999888875
No 184
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=60.44 E-value=7.9 Score=43.66 Aligned_cols=45 Identities=18% Similarity=0.023 Sum_probs=33.5
Q ss_pred CCCceeeeeeccCCCCcccccCCC-ceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~-~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
+.-++||+.||.|.++.-+....- .-.++++|+++.+.+.-+.|.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~ 122 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL 122 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 455899999999998876655321 123789999999888777664
No 185
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=59.91 E-value=7.4 Score=42.76 Aligned_cols=45 Identities=27% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
..-++|||.||.|.+++.+.+.+--..+.++|+++.+++.-+.|.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR 75 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 345799999999999998876542236899999999988777764
No 186
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=59.77 E-value=7.1 Score=44.91 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=29.8
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFK 835 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~ 835 (1522)
..-+++|+|||+|++++.+... ...++++|+++.....|+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHH
Confidence 5678999999999999998653 368899999998888777
No 187
>KOG2730|consensus
Probab=58.67 E-value=9.5 Score=43.18 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=44.5
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CC-cceEeCchhHHHHhh
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PG-CTVFVDDCNKILQRV 855 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~-~~v~~~di~~i~~~~ 855 (1522)
..-.+||-|||+||-.+-|..-| -.+.|||+|+.-..-=++|- |+ ...+++|.-++...+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH
Confidence 44568999999999998888777 47889999996555556663 33 355888988775533
No 188
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=58.55 E-value=9.1 Score=47.33 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=51.9
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----C--CcceEeCchhHHHHhhhc
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----P--GCTVFVDDCNKILQRVID 857 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p--~~~v~~~di~~i~~~~i~ 857 (1522)
.+|+|||=.||+|+-....| ..-+.+||+++.|...=+.|+ + ....++.|+-++++...+
T Consensus 220 rvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~ 286 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER 286 (393)
T ss_pred eEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh
Confidence 49999999999999999999 788999999999988877776 2 246789999999987765
No 189
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=58.51 E-value=20 Score=43.98 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=57.2
Q ss_pred CCceeeeeeccCCCCcccccCCCc--eEEEEEcccHHHHHHHHHhCCCC-----ceeccchHHHHHHhhccccccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVA--RSTWAIEFDSAAATAFKMNNPGC-----TVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~--~~v~AvE~d~~A~~ty~~N~p~~-----~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
.-+++|++|+.||=+.=+.+..-. .+++|+|.++.-.+..+.|-... .+...|-..+ ...
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~-------------~~~ 223 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL-------------AEL 223 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc-------------ccc
Confidence 468999999999988766665431 35799999999999999985322 2222221111 111
Q ss_pred CCCCCcccEEEeCCCCCccccccc
Q psy16462 959 LPRKGEVEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 959 lp~~g~vDvL~GGPPCQgFS~agr 982 (1522)
.+..+.+|-|.--+||.|.-...|
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr 247 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRR 247 (355)
T ss_pred ccccCcCcEEEECCCCCCCccccc
Confidence 222224999999999999888765
No 190
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=58.36 E-value=11 Score=47.81 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=56.3
Q ss_pred CCceeeeeeccCCCCcccccCC-CceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSG-VARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG-~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-++||++||.||-+.-+.+.- -.-.++|+|+++.-++..+.|.- ++.+.+.|...+. ..
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-------------~~- 179 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-------------AA- 179 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh-------------hh-
Confidence 4579999999999987665421 11258899999999999988843 3333444433321 11
Q ss_pred CCCCcccEEEeCCCCCccccccc
Q psy16462 960 PRKGEVEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 960 p~~g~vDvL~GGPPCQgFS~agr 982 (1522)
.++.+|.|+--+||.|--...|
T Consensus 180 -~~~~fD~ILvDaPCSG~G~~rk 201 (470)
T PRK11933 180 -LPETFDAILLDAPCSGEGTVRK 201 (470)
T ss_pred -chhhcCeEEEcCCCCCCccccc
Confidence 2356999999999988765543
No 191
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=58.23 E-value=9.2 Score=44.56 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=43.6
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC---CcceEeCchhHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP---GCTVFVDDCNKI 851 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p---~~~v~~~di~~i 851 (1522)
.-.+||+-||.|.++..+.+.+ ..+.++|+|+.+.+..+.++. +..++++|+..+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~ 87 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV 87 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC
Confidence 4579999999999999998876 368999999999888887763 345666666543
No 192
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=58.09 E-value=12 Score=43.19 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=45.9
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~i 851 (1522)
+.-++|||-||.|.++.-|.+..-...+.++|+++.+.+.-+.++++..++..|+..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~ 88 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASW 88 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc
Confidence 3458999999999999887664223478999999999998888888777777776543
No 193
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=57.23 E-value=11 Score=43.74 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=49.8
Q ss_pred ccCCCCCCCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHH----HHHhcC--CCcceEeCchhHHHHhh
Q psy16462 787 TEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAA----AFKMNN--PGCTVFVDDCNKILQRV 855 (1522)
Q Consensus 787 ~~~~~~~~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~----ty~~N~--p~~~v~~~di~~i~~~~ 855 (1522)
..|......-++|||-||+|.+++-+.+-----.+.+||+++.+.+ +.++|. ....++++|+..+.+..
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 3343334478899999999999988876521256889999997665 444443 45678999999997644
No 194
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=57.01 E-value=8.3 Score=44.65 Aligned_cols=44 Identities=30% Similarity=0.344 Sum_probs=37.4
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
..-++||+.||.|.+++.+.+.| ...+.++|+++.|.+.-+.|.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENA 162 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHH
Confidence 34579999999999999888888 456999999999998777775
No 195
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=56.71 E-value=11 Score=42.53 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=36.1
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP 839 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p 839 (1522)
+..++|||.||.|.++.-+...+ ..+.++|+++.+...-+.+.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH
Confidence 35689999999999998887766 368999999998887766653
No 196
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=56.70 E-value=8.8 Score=45.69 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=41.2
Q ss_pred CCCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 793 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 793 ~~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.+..++||+=||.|=|+++..+.| ..-+.|+|+|+.|.++=+.|.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa 205 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENA 205 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHH
Confidence 367789999999999999999999 788999999999999888875
No 197
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=56.21 E-value=11 Score=41.97 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=36.0
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
+..++||+-||.|.++.-|.+.|+ .+.++|+++.+++..+.+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIK 72 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH
Confidence 356899999999999999988886 5789999999988776653
No 198
>PRK10742 putative methyltransferase; Provisional
Probab=55.07 E-value=11 Score=43.85 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=36.5
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p 930 (1522)
..++||+|||.|..+.=+...|. + +.++|.++.++...+.|.-
T Consensus 89 ~p~VLD~TAGlG~Da~~las~G~-~-V~~vEr~p~vaalL~dgL~ 131 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASVGC-R-VRMLERNPVVAALLDDGLA 131 (250)
T ss_pred CCEEEECCCCccHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHHH
Confidence 45899999999998888888887 5 8899999999988887743
No 199
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=54.88 E-value=9.7 Score=44.25 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=36.4
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
+..+++|+.||.|.++.-+....--..+.++|+++.|.+.-+.|.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 346799999999999888876542346899999999988877775
No 200
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=54.29 E-value=14 Score=44.66 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N 928 (1522)
...++||+-||.|.++.-+...|. .++++|.++.+++..+.+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~ 172 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLH 172 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHH
Confidence 456899999999999988877775 578999999998887765
No 201
>KOG2078|consensus
Probab=54.21 E-value=12 Score=46.13 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=45.4
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCC-------cceEeCchhHHHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPG-------CTVFVDDCNKILQ 853 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~-------~~v~~~di~~i~~ 853 (1522)
.+-|+|||+|=+++-+.+-| -.++|+|.++.+.+.++.|.+- ..+++-|...+++
T Consensus 252 vv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 252 VVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred hhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 47899999999999998888 4799999999999999999853 3455666666654
No 202
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=53.78 E-value=12 Score=42.22 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=36.3
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p 930 (1522)
+..+++|+.||.|.++.-+...+. .+.++|+++.++..-+.+.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence 456899999999999888877664 57899999999988777653
No 203
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=53.49 E-value=13 Score=44.89 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=32.8
Q ss_pred CCCceeeeeeccCCCCccc--ccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGL--DKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~--~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
...++||+-+|+|++..-+ ...|. .+.|+|+|+.|++.-+.|.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHH
Confidence 4678999999999775433 33353 4679999999999888874
No 204
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=52.90 E-value=9.9 Score=45.55 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=35.5
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.++|||.||.|.+++.+....--..+.++|+++.|.+.-+.|.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4799999999999998876532346889999999999877774
No 205
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=52.50 E-value=15 Score=42.31 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=43.0
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchhH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNK 850 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~ 850 (1522)
.-++|||=||.|.++.-|...| ..+.++|+++.+.+.-+.+.+...+++.|+..
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~ 96 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDAADHYLAGDIES 96 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCCEEEcCccc
Confidence 4579999999999988777666 47899999999999888887655566666544
No 206
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=52.34 E-value=32 Score=38.90 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=32.7
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
.-+++|+.||.|.++.-+... |-.-.+.++|+++.+++..+.|.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~ 90 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKV 90 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 458999999999987766543 22125789999999887777664
No 207
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=52.25 E-value=12 Score=46.90 Aligned_cols=56 Identities=16% Similarity=0.327 Sum_probs=41.2
Q ss_pred ceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKI 851 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i 851 (1522)
-++||++||.||.++-+.+. +.--.+.|+|+++...+..+.|. .+..+++.|...+
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~ 315 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNL 315 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhc
Confidence 46999999999999887653 21237899999999888777764 3345666676554
No 208
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=52.06 E-value=10 Score=47.65 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=40.3
Q ss_pred ceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKI 851 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i 851 (1522)
-++||++||.||+++-+.+. +---.+.|+|+++.+.+..+.|. .+..+++.|+..+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~ 313 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKV 313 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc
Confidence 36999999999999887653 11237999999999988777764 2334555555443
No 209
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=51.78 E-value=16 Score=42.68 Aligned_cols=56 Identities=32% Similarity=0.370 Sum_probs=48.4
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC---CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN---PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~---p~~~v~~~di~~i 851 (1522)
+...+||+.+|.|.++.-|.+.+ .-+.++|+|+.-++.++..+ ++..++++|+..+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhcc
Confidence 67889999999999999998888 88999999999999999966 4667888887765
No 210
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=51.38 E-value=16 Score=41.89 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=32.1
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAA 832 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ 832 (1522)
.-.+||+-||.|||+.-+.+.| ...++|+|+++.-..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~ 112 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLA 112 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHH
Confidence 3479999999999999999988 788999999995444
No 211
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=50.98 E-value=20 Score=41.37 Aligned_cols=44 Identities=30% Similarity=0.323 Sum_probs=38.6
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p 930 (1522)
+.++++|+=||+|-||.-+.+.|+ .|.++|+++.++++-++.-.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~ 102 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHAL 102 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhh
Confidence 678999999999999999999995 67799999999998876543
No 212
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=50.59 E-value=11 Score=44.40 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=35.3
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.+++||+||.|.+++.+....--..+.++|+++.|.+.-+.|.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 4799999999999988877542236899999999998877774
No 213
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=50.15 E-value=34 Score=38.41 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=50.3
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC-CCceeccchHHHHHHhhcccccccccccCCCCCc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-GCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 964 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~ 964 (1522)
..++||+-||.|.++.-+...+....+.++|+++.+....+.+.+ +...+..|+... .+ ..+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------~~-~~~~ 98 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL---------------PL-EDSS 98 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC---------------CC-CCCc
Confidence 467999999999998888777653447899999999877776654 233344443221 11 2357
Q ss_pred ccEEEeCCCCC
Q psy16462 965 VEMLCGGPPCQ 975 (1522)
Q Consensus 965 vDvL~GGPPCQ 975 (1522)
+|+|+..-..+
T Consensus 99 fD~vi~~~~l~ 109 (240)
T TIGR02072 99 FDLIVSNLALQ 109 (240)
T ss_pred eeEEEEhhhhh
Confidence 99999765544
No 214
>PRK10742 putative methyltransferase; Provisional
Probab=49.94 E-value=16 Score=42.41 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=37.4
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
..++||+|||-|..++=+...| +. +.++|.++.++...+.|.
T Consensus 89 ~p~VLD~TAGlG~Da~~las~G-~~-V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASVG-CR-VRMLERNPVVAALLDDGL 130 (250)
T ss_pred CCEEEECCCCccHHHHHHHHcC-CE-EEEEECCHHHHHHHHHHH
Confidence 4599999999999999999999 56 999999999999888775
No 215
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=49.42 E-value=10 Score=37.08 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=45.3
Q ss_pred eeeeeeccCCCCcccccC---CCceEEEEEcccHHHHHHHHHhC----CCCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 889 CLEVFAGAGGLSRGLDKS---GVARSTWAIEFDSAAATAFKMNN----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 889 ~iDLFsG~GGls~G~~~a---G~~~~v~AvE~d~~A~~ty~~N~----p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
++||-||.|-....+... |....++++|+++.+.+..+.+. +.+..+..|+..+.. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~----------------~ 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF----------------S 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH----------------H
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc----------------c
Confidence 589989988877777654 43246889999999999888887 566777788766421 1
Q ss_pred CCcccEEEe
Q psy16462 962 KGEVEMLCG 970 (1522)
Q Consensus 962 ~g~vDvL~G 970 (1522)
.+.+|+++.
T Consensus 65 ~~~~D~v~~ 73 (101)
T PF13649_consen 65 DGKFDLVVC 73 (101)
T ss_dssp SSSEEEEEE
T ss_pred CCCeeEEEE
Confidence 347899987
No 216
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=48.89 E-value=7.3 Score=48.03 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=41.5
Q ss_pred CCCceeeeeeccC--CCCcccccCCCceEEEEEcccHHHHHHHHHhC------C-CCceeccchHHHH
Q psy16462 885 RPLRCLEVFAGAG--GLSRGLDKSGVARSTWAIEFDSAAATAFKMNN------P-GCTVFVDDCNKIL 943 (1522)
Q Consensus 885 ~~l~~iDLFsG~G--Gls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~------p-~~~~~~~Di~~l~ 943 (1522)
.+++++|.+||+| |+-.+.|-+|. .-++++|+|+.|++..+.|. . .+.+.+.|.+.++
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~-~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGV-DKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSE-CEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCC-CEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 4689999999999 66677776776 78999999999999999993 1 1345566777764
No 217
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=48.76 E-value=24 Score=39.28 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=45.8
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i~~ 853 (1522)
-.++|+=||+|++++=+..++-.-.++|+|.|+.|.++-+.|. ++..+..++.-+.|.
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 4799998888888876666676668999999999999999884 566666666666654
No 218
>KOG2133|consensus
Probab=48.55 E-value=13 Score=49.39 Aligned_cols=125 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred EEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEeccCCC
Q psy16462 585 SYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKK 664 (1522)
Q Consensus 585 ~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~~~~ 664 (1522)
..++..|.++|.|++.... ++||.|+-| |..+..+
T Consensus 140 s~~e~~y~~~~~l~~~v~~------------------------------------------~~p~lia~~---~~~~~~K 174 (1229)
T KOG2133|consen 140 SHDETLYDLRDSLFVEVSQ------------------------------------------PEPYLIAAI---CGFKYTK 174 (1229)
T ss_pred cccchhhhhhhhhhhhhcc------------------------------------------CCccccccc---cCccccc
Confidence 4567889999999998753 457776654 3333221
Q ss_pred CcCCCceEEEEEEeecccCCC-CC---------------cccccccCcceEEeeccc-eeeeccceeeeEEEeecCCccc
Q psy16462 665 NVSASDVFLTVKKFYRPENTH-RS---------------VEFTYQLDLNKLYWSDEE-EQVSLSDVQGKCFVVCEDNLQI 727 (1522)
Q Consensus 665 ~~~~~~~~v~V~wfYRPeDt~-~~---------------~~~~~~~D~rELf~S~e~-d~vpv~~I~GKC~V~~~~d~~~ 727 (1522)
. ...++++.-.++|++|+. .+ .......-.++||.|.-. .+-|.+|..|||++.+..|...
T Consensus 175 r--~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~sq~l~~s~l~~i~qppscp~gk~~~~~skd~~h 252 (1229)
T KOG2133|consen 175 R--DDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPLSQELFNSELQGITQPPSCPRGKGIAEYSKDVRH 252 (1229)
T ss_pred c--ccccccccccccccccCcccccccccCchhhhhccCCccCCCcchhhhhcccccCCCCCCcCCCCCceEEeeccccc
Confidence 1 145666777788888876 11 001112346788888876 8889999999999997776531
Q ss_pred ---cccccccCCCCeEEEeeeccCCCCceecCC
Q psy16462 728 ---STDRWSSRGPHRFYFNEAYNSKTEEFTNLP 757 (1522)
Q Consensus 728 ---~~~~~~~~~~d~Fyc~~~Yd~~~~~f~~lP 757 (1522)
..+... ..-++||+...|.+.++....++
T Consensus 253 ~~~~n~p~~-ld~~i~fk~agglpps~k~a~P~ 284 (1229)
T KOG2133|consen 253 GGNTNAPFS-LDNDIFFKCAGGLPPSTKPASPT 284 (1229)
T ss_pred CCccCCCCc-ccceeeeecccCCCCCCCCCCCc
Confidence 222222 44567888889988777665543
No 219
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=48.33 E-value=14 Score=46.64 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=38.3
Q ss_pred ceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcCC-----CcceEeCchhH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNNP-----GCTVFVDDCNK 850 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~p-----~~~v~~~di~~ 850 (1522)
-.+||++||.||.++-+.+. +..-.++|+|+++...+..+.|.. ...+.+.|...
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~ 312 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS 312 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc
Confidence 46999999999988766542 112379999999998887777652 23444555443
No 220
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=48.23 E-value=19 Score=35.19 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=41.2
Q ss_pred EEeeecCCCccccccccc---CCeeEEEEEcCCHHHHHHHHhcC----CCcceEeCchhHHH
Q psy16462 798 CLEVFAGAGGLSRGLDKS---GVARSTWAIEFDSAAAAAFKMNN----PGCTVFVDDCNKIL 852 (1522)
Q Consensus 798 ~ldLFaG~GGls~Gl~~a---G~~~~~~ave~d~~A~~ty~~N~----p~~~v~~~di~~i~ 852 (1522)
||||=||.|-....|... |.-..++++|+++.+.+..+.++ +....++.|+..+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~ 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc
Confidence 689999999998888764 42267999999999988777777 67788999998764
No 221
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=47.50 E-value=20 Score=43.62 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=32.6
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
++|||.||.|.++.-+.+.+--..+.++|+++.|.+.-+.|.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL 240 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 699999999999988876542235899999998777555543
No 222
>KOG2904|consensus
Probab=47.23 E-value=17 Score=42.43 Aligned_cols=44 Identities=25% Similarity=0.184 Sum_probs=35.8
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
...++|++||.|.+|+++-..----++-|+|..+.|...-..|-
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHH
Confidence 34799999999999999965432457899999999998777774
No 223
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=47.10 E-value=42 Score=36.86 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=68.9
Q ss_pred CCCceeeeeeccCCCCcccccCCC-ceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 963 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~-~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g 963 (1522)
+.+.+++|=.|.|-+......-|. .+.+.++|.+++-...+..-+|+..++++|.-.+...+ |+ + ...
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l--~e------~---~gq 116 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL--GE------H---KGQ 116 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH--hh------c---CCC
Confidence 578899999999999988888887 46789999999999999999999999999866552111 11 1 123
Q ss_pred cccEEEeCCCCCcccccc
Q psy16462 964 EVEMLCGGPPCQGFSGMN 981 (1522)
Q Consensus 964 ~vDvL~GGPPCQgFS~ag 981 (1522)
.+|.++-|-|--.|+..-
T Consensus 117 ~~D~viS~lPll~~P~~~ 134 (194)
T COG3963 117 FFDSVISGLPLLNFPMHR 134 (194)
T ss_pred eeeeEEeccccccCcHHH
Confidence 799999999998888754
No 224
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=46.86 E-value=26 Score=40.58 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=43.9
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC------CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN------PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~------p~~~v~~~di~~i 851 (1522)
.+.++||+-||.|.++.-|.+.| ..+.++|+++.+.+.-+.+. +...+++.|+.++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 45699999999999999998887 35789999998887766654 2345667777765
No 225
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=46.83 E-value=2e+02 Score=30.68 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.8
Q ss_pred eEEEEEEEcCeEEEecCeEEECCCC
Q psy16462 579 EYYNCVSYEGEQYKLKSCVYVNPDC 603 (1522)
Q Consensus 579 ~~y~~~~~~g~~Y~vgD~Vyl~p~~ 603 (1522)
.||.++-+.-+...|||.|=|.|..
T Consensus 1 i~y~GiflGAE~I~vGD~VRl~~~~ 25 (139)
T PF10383_consen 1 IYYRGIFLGAEMIWVGDAVRLKPLN 25 (139)
T ss_pred CeECeEEEeeEEEEeCCEEEECccC
Confidence 3888999999999999999997753
No 226
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=46.73 E-value=40 Score=42.70 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=50.1
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC---CCCceeccchHHHHHHhhcccccccccccCC-CC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDCNKILQRVIDNEVCDDKKQKLP-RK 962 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~---p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp-~~ 962 (1522)
-+++||.||.|.++..|...+ ..+.++|+++.+++.-+... ++..++..|+... .+| ..
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~---------------~~~~~~ 101 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSP---------------DLNISD 101 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccc---------------ccCCCC
Confidence 479999999999999988775 35789999999987544322 2333444443211 122 23
Q ss_pred CcccEEEeCCCCCccc
Q psy16462 963 GEVEMLCGGPPCQGFS 978 (1522)
Q Consensus 963 g~vDvL~GGPPCQgFS 978 (1522)
+.+|+|+...++.-++
T Consensus 102 ~~fD~I~~~~~l~~l~ 117 (475)
T PLN02336 102 GSVDLIFSNWLLMYLS 117 (475)
T ss_pred CCEEEEehhhhHHhCC
Confidence 5799999988755443
No 227
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=46.41 E-value=25 Score=42.56 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=34.9
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
..++|||-||.|.++.-|.+.| ..++++|+++.+.+..+.+.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHH
Confidence 4589999999999999888777 36899999998888776553
No 228
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=46.08 E-value=24 Score=40.86 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=42.6
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC------CCceeccchHHH
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKI 942 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p------~~~~~~~Di~~l 942 (1522)
...+++|+-||.|.++..+...|. -+.++|+++.+++..+.+.. +..++.+|+.++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 356899999999999999988885 46799999999888777642 334555665544
No 229
>KOG1500|consensus
Probab=45.92 E-value=25 Score=41.96 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=64.3
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 964 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~ 964 (1522)
..-.++|+=||.|-||.=..+||. +.++|+|-++-|..+-++--.+ .+.+-|. ++.|.+.+. .+ |.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N--~~~~rIt-----VI~GKiEdi---eL--PEk 243 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASN--NLADRIT-----VIPGKIEDI---EL--PEK 243 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcC--CccceEE-----EccCccccc---cC--chh
Confidence 344689999999999999999997 7889999887765554432211 1111111 233443321 33 468
Q ss_pred ccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEE
Q psy16462 965 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLL 1013 (1522)
Q Consensus 965 vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~Fvm 1013 (1522)
+|+|+--| ||- --.+..++..|+-.-+.++|.--++
T Consensus 244 ~DviISEP-------MG~------mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 244 VDVIISEP-------MGY------MLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred ccEEEecc-------chh------hhhhHHHHHHHHHHHhhcCCCCccc
Confidence 99999887 331 1122347778887778888864333
No 230
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=45.76 E-value=22 Score=39.47 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh-----CCCCceeccchHHHHHHhhcccccccccccCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N-----~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
.-++||+-||.|.++..+....-...+.++|+++.++..-+.| ..+..++.+|+..+... .+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~------------~~- 83 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDK------------FF- 83 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHh------------hC-
Confidence 4579999999999988877753223578999999876555443 34556677777665311 11
Q ss_pred CCCcccEEEeCCCCCc
Q psy16462 961 RKGEVEMLCGGPPCQG 976 (1522)
Q Consensus 961 ~~g~vDvL~GGPPCQg 976 (1522)
..+.+|.|+.-+|-.-
T Consensus 84 ~~~~~d~v~~~~pdpw 99 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPW 99 (194)
T ss_pred CCCceeEEEEECCCcC
Confidence 2347899998877443
No 231
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=45.73 E-value=8.3 Score=45.94 Aligned_cols=43 Identities=33% Similarity=0.363 Sum_probs=37.7
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
.-+++|+=||.|-|+++....|. +.+.|+|+|+.|+++-+.|.
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENA 204 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHH
Confidence 34899999999999999999997 67899999999999988883
No 232
>PRK14968 putative methyltransferase; Provisional
Probab=45.48 E-value=18 Score=39.28 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=35.1
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.-++||+.||.|.++..+...+ ..+.++|+++.+.+..++|.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHH
Confidence 3479999999999999887775 46789999999988777764
No 233
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=44.81 E-value=68 Score=36.91 Aligned_cols=77 Identities=14% Similarity=-0.004 Sum_probs=47.3
Q ss_pred CCCceeeeeeccCCCCccccc--CCCceEEEEEcccHHHHHHHHHhCC------CCceeccchHHHHHHhhccccccccc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDK--SGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKK 956 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~--aG~~~~v~AvE~d~~A~~ty~~N~p------~~~~~~~Di~~l~~~v~~g~i~~~~~ 956 (1522)
..-+++++.+|+|..++.+.. .+- -.+.++|+++.+++.-+.|+. ...++.+|..+.+..+..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~-------- 138 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN-------- 138 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh--------
Confidence 455899999999974443332 221 257899999999988888763 234556666555432211
Q ss_pred ccCCCCCcccEEEeCC
Q psy16462 957 QKLPRKGEVEMLCGGP 972 (1522)
Q Consensus 957 ~~lp~~g~vDvL~GGP 972 (1522)
. +..+.+|+++...
T Consensus 139 -~-~~~~~fD~VfiDa 152 (234)
T PLN02781 139 -N-DPKPEFDFAFVDA 152 (234)
T ss_pred -C-CCCCCCCEEEECC
Confidence 0 1134688887643
No 234
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=44.74 E-value=11 Score=44.60 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=36.9
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
.-+++|+.||.|.++..+...|. ..+.++|+++.|++.-+.|.
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~ 202 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNA 202 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHH
Confidence 35799999999999988888775 57889999999998888774
No 235
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=43.87 E-value=19 Score=43.31 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p 930 (1522)
+..++||+.||.|.++.-+...|. .+.++|+++.+++.-+.|.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence 356899999999999999988885 57899999999988777754
No 236
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=43.87 E-value=21 Score=44.85 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=40.4
Q ss_pred ceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcCC-----CcceEeCchhHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNNP-----GCTVFVDDCNKI 851 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~p-----~~~v~~~di~~i 851 (1522)
-++||++||.||.++-+... +---.++|+|+++...+..+.|.. +..+.+.|...+
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l 300 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL 300 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh
Confidence 47999999999998766542 112379999999999888877752 334556666554
No 237
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=43.74 E-value=14 Score=43.03 Aligned_cols=74 Identities=30% Similarity=0.355 Sum_probs=54.5
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC---CCCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~---p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
....+||+.+|.|.++.-|...| +-+.++|+|+..++.++..+ ++..++.+|...+. . ...+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~-------~----~~~~-- 94 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD-------L----YDLL-- 94 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC-------G----GGHC--
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc-------c----HHhh--
Confidence 46689999999999999998888 57889999999999999965 45667777754431 0 0001
Q ss_pred CCcccEEEeCCC
Q psy16462 962 KGEVEMLCGGPP 973 (1522)
Q Consensus 962 ~g~vDvL~GGPP 973 (1522)
......++|..|
T Consensus 95 ~~~~~~vv~NlP 106 (262)
T PF00398_consen 95 KNQPLLVVGNLP 106 (262)
T ss_dssp SSSEEEEEEEET
T ss_pred cCCceEEEEEec
Confidence 235678888887
No 238
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=43.62 E-value=30 Score=38.50 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=32.3
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N 928 (1522)
..+++|+-||+|.+++-+....-...+.++|.++.+++..+.|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~ 88 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV 88 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH
Confidence 5689999999999888776422113578999999887766655
No 239
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=43.62 E-value=21 Score=40.26 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=36.5
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
+..++||+.||.|.++..|.+.| .. +.++|+++.+.+.-+.++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~-~~-v~~~D~s~~~i~~a~~~~ 105 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG-AK-VVASDISPQMVEEARERA 105 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC-CE-EEEEECCHHHHHHHHHHH
Confidence 45689999999999999998887 34 899999999888777765
No 240
>PRK05785 hypothetical protein; Provisional
Probab=43.59 E-value=54 Score=37.51 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=57.3
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCC-CCc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR-KGE 964 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~-~g~ 964 (1522)
.-++|||-||.|-++.-+...+ ..-+.++|+++.+++.-+... ..+.+|. ..+|. .+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~-----------------~~lp~~d~s 110 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD---DKVVGSF-----------------EALPFRDKS 110 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc---ceEEech-----------------hhCCCCCCC
Confidence 4589999999998887777662 135789999999988755432 1222222 12332 367
Q ss_pred ccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEE
Q psy16462 965 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLE 1014 (1522)
Q Consensus 965 vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmE 1014 (1522)
+|+|+.+.-.+.+ .| ...++.++.|+ ++|...++|
T Consensus 111 fD~v~~~~~l~~~-----------~d-~~~~l~e~~Rv---Lkp~~~ile 145 (226)
T PRK05785 111 FDVVMSSFALHAS-----------DN-IEKVIAEFTRV---SRKQVGFIA 145 (226)
T ss_pred EEEEEecChhhcc-----------CC-HHHHHHHHHHH---hcCceEEEE
Confidence 9999987632221 11 23355555555 457665665
No 241
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=43.32 E-value=13 Score=42.84 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=29.1
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHH
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKM 927 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~ 927 (1522)
.-+++|+|||+|++++.+...+ ..++++|+++.....+++
T Consensus 21 ~~~~vepF~G~g~V~~~~~~~~--~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 21 HKTYVEPFAGGGSVFLNLKQPG--KRVIINDINPDLINFWKA 60 (260)
T ss_dssp -SEEEETT-TTSHHHHCC---S--SEEEEEES-HHHHHHHHH
T ss_pred CCEEEEEecchhHHHHHhcccc--cceeeeechHHHHHHHHH
Confidence 5578999999999998887644 467899999999888873
No 242
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=43.30 E-value=23 Score=42.31 Aligned_cols=56 Identities=27% Similarity=0.264 Sum_probs=43.8
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC------CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN------PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~------p~~~v~~~di~~i 851 (1522)
..-.+||+-||.|.++.-+.+.+ ..++|+|+|+.+++..+.++ ++..++++|+..+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 34579999999999998887765 35899999999888777664 3456778887654
No 243
>PRK06922 hypothetical protein; Provisional
Probab=43.16 E-value=23 Score=46.42 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC----CCceeccchHHHHHHhhcccccccccccCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p----~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp 960 (1522)
+..++||+.||.|.++..+....-..-+.++|+++.+++..+.+.+ +..++.+|+..+ ...+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL-------------p~~f- 483 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL-------------SSSF- 483 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-------------cccc-
Confidence 4568999999999887766543211356799999999888877643 223344444322 0012
Q ss_pred CCCcccEEEeCCCCC
Q psy16462 961 RKGEVEMLCGGPPCQ 975 (1522)
Q Consensus 961 ~~g~vDvL~GGPPCQ 975 (1522)
.++.+|+++.+++-+
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 246799999887644
No 244
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=42.99 E-value=20 Score=40.46 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.3
Q ss_pred CceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchh
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCN 849 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~ 849 (1522)
.-++||+.||.|.++.-+.+. |.--.+.++|+++.+.+.-+.|. ++..+++.|+.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 106 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM 106 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh
Confidence 357999999999998877653 32236899999998877666554 23444555544
No 245
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=42.81 E-value=18 Score=41.26 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=34.4
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
..+++|+.||.|.+..-+.+..--..+.++|+++.+.+.-+.|.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA 131 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 35799999999999888876532236889999998888666654
No 246
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=42.13 E-value=75 Score=33.81 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=30.4
Q ss_pred eeeEEEECCEEEecCCEEEEecCC----------CCCCCcEEEEEEEeccc
Q psy16462 402 YYKSALIGGEEVKVGDYVMVESDD----------PNNPPPVGKVCYMYEDM 442 (1522)
Q Consensus 402 ~Y~~~~v~g~~~~vGD~V~V~~~d----------~~~p~~IarIe~m~e~~ 442 (1522)
||..+.++-|.|.|||.|-|.+.. ...-.-|..|..|....
T Consensus 2 ~y~GiflGAE~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~~ 52 (139)
T PF10383_consen 2 YYRGIFLGAEMIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLRL 52 (139)
T ss_pred eECeEEEeeEEEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEec
Confidence 899999999999999999995432 22234567777776654
No 247
>PRK04266 fibrillarin; Provisional
Probab=42.10 E-value=33 Score=39.39 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=37.1
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC---CCcceEeCch
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN---PGCTVFVDDC 848 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~---p~~~v~~~di 848 (1522)
.-++||+-||+|+++..+....---.++|+|+++.+.+....+. ++...+.+|+
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~ 129 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA 129 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC
Confidence 35899999999999988876311237999999997766554432 3334444444
No 248
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=41.79 E-value=12 Score=41.32 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=30.1
Q ss_pred CCceEEeeecCCCcccccccc--cCCe-------eEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDK--SGVA-------RSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~--aG~~-------~~~~ave~d~~A~~ty~~N~ 838 (1522)
+.-.++|.|||+|.+-+=... ..+. ...+++|+++.|.+.-+.|.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~ 81 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL 81 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence 345799999999999743322 2211 12889999999988777775
No 249
>KOG2078|consensus
Probab=41.65 E-value=25 Score=43.48 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=43.7
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC-------CceeccchHHHH
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG-------CTVFVDDCNKIL 943 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~-------~~~~~~Di~~l~ 943 (1522)
=.+.|+|||+|-+++-+..-|. .++|+|.++.+.+-++.|.+- ..+++.|-..++
T Consensus 251 evv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 251 EVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred chhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 3567999999999998888884 688999999999999999763 344555655553
No 250
>PRK03612 spermidine synthase; Provisional
Probab=41.40 E-value=39 Score=43.60 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=47.1
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC------------CCcceEeCchhHHHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN------------PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~------------p~~~v~~~di~~i~~ 853 (1522)
+-++++|-+|.|++..-+.+.+....+.++|+|+...+.-+.|+ |...++++|....++
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~ 368 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR 368 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH
Confidence 34799999999999877766553478999999999999877742 566788889888765
No 251
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=40.99 E-value=12 Score=47.12 Aligned_cols=58 Identities=28% Similarity=0.288 Sum_probs=39.3
Q ss_pred CCCceeeeeeccCCCCcccccCC----CceEEEEEcccHHHHHHHHH----hC--CCCceeccchHHH
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSG----VARSTWAIEFDSAAATAFKM----NN--PGCTVFVDDCNKI 942 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG----~~~~v~AvE~d~~A~~ty~~----N~--p~~~~~~~Di~~l 942 (1522)
....++|+=||-|.|+.-..+|| ...-++|||.++.|..+.+. |. ..+.++.+|++++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 35678999999999997666665 23678999999999988742 31 2345566665544
No 252
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=40.91 E-value=18 Score=43.04 Aligned_cols=43 Identities=23% Similarity=0.243 Sum_probs=30.4
Q ss_pred CCceeeeeeccCCCCcccccC-------CCceEEEEEcccHHHHHHHHHh
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-------GVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-------G~~~~v~AvE~d~~A~~ty~~N 928 (1522)
.-+++|.+||.|+|-..+... .....++++|+++.++..-+.|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHH
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhh
Confidence 447899999999987766541 1125678999999998876665
No 253
>PRK00811 spermidine synthase; Provisional
Probab=40.82 E-value=42 Score=39.78 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=50.2
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCC----------CCceeccchHHHHHHhhccccccc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP----------GCTVFVDDCNKILQRVIDNEVCDD 954 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p----------~~~~~~~Di~~l~~~v~~g~i~~~ 954 (1522)
.-++|+|.+|.|++..-+... +. .-+.++|+|+..++..+.+++ +..++.+|...++..
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~-~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--------- 146 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSV-EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--------- 146 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCC-CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---------
Confidence 347899999999887766554 54 568899999998888887654 345566776655321
Q ss_pred ccccCCCCCcccEEEeCC
Q psy16462 955 KKQKLPRKGEVEMLCGGP 972 (1522)
Q Consensus 955 ~~~~lp~~g~vDvL~GGP 972 (1522)
..+..|+|+.-.
T Consensus 147 ------~~~~yDvIi~D~ 158 (283)
T PRK00811 147 ------TENSFDVIIVDS 158 (283)
T ss_pred ------CCCcccEEEECC
Confidence 134789999854
No 254
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=40.78 E-value=14 Score=42.80 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=37.4
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
+.-+++|+.||.|.++..+...|. ..+.++|+++.|++.-+.|.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENA 162 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHH
Confidence 345899999999999998888886 45889999999999888875
No 255
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=40.71 E-value=12 Score=41.77 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=57.4
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 964 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~ 964 (1522)
...+|+||.||.|-.+..-..+|. .-+++.|+++.+.+....|-....+ .|. +. ....+-.++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv---~i~----------~~--~~d~~g~~~~ 142 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGV---SIL----------FT--HADLIGSPPA 142 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccc---eeE----------Ee--eccccCCCcc
Confidence 678999999999999999999997 6678999999999999988532111 000 00 0011124568
Q ss_pred ccEEEeCCCCCcccccc
Q psy16462 965 VEMLCGGPPCQGFSGMN 981 (1522)
Q Consensus 965 vDvL~GGPPCQgFS~ag 981 (1522)
+|+|..|-=|=..+.+-
T Consensus 143 ~Dl~LagDlfy~~~~a~ 159 (218)
T COG3897 143 FDLLLAGDLFYNHTEAD 159 (218)
T ss_pred eeEEEeeceecCchHHH
Confidence 99999998776666543
No 256
>PRK00811 spermidine synthase; Provisional
Probab=40.49 E-value=41 Score=39.87 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=44.7
Q ss_pred CceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC----------CCcceEeCchhHHHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN----------PGCTVFVDDCNKILQ 853 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~----------p~~~v~~~di~~i~~ 853 (1522)
+-++|+|-+|.|++..-+.+. + ...+.+||+|+...+.-+.++ |...++.+|...++.
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA 145 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh
Confidence 347999999999998776554 5 678999999998777776655 345678888887754
No 257
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=40.43 E-value=21 Score=44.60 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=34.5
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
+++||.||.|-+++.+.+...-..+.++|+++.|.+.-+.|.
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 799999999999988765422346899999999999888775
No 258
>PRK04148 hypothetical protein; Provisional
Probab=40.34 E-value=41 Score=35.61 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=40.8
Q ss_pred CceEEeeecCCCc-ccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchh
Q psy16462 795 PLRCLEVFAGAGG-LSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCN 849 (1522)
Q Consensus 795 ~~~~ldLFaG~GG-ls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~ 849 (1522)
..+++++=+|.|. ++.-|.+.| .-+.|+|+++.|++..+.+. ..+..+|+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~--~~~v~dDlf 68 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLG--LNAFVDDLF 68 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhC--CeEEECcCC
Confidence 4679999999876 888888888 47889999999999888874 455566654
No 259
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=40.32 E-value=67 Score=35.72 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=34.5
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N 928 (1522)
..++||+=||.|.++.-+.+.|. .+.++|+++.|++..+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDM 71 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHH
Confidence 45899999999999988888885 578999999998876654
No 260
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=39.94 E-value=29 Score=41.81 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=36.9
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP 839 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p 839 (1522)
..++|||-||.|.+++-|.+.| ..+.++|+++.+.+.-+.|.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH
Confidence 4689999999999999998887 368999999999887777754
No 261
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=39.76 E-value=23 Score=43.75 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=35.5
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
-++|||.||.|-+++-+.+.+---.+.++|+++.|.+.-+.|.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3799999999999988876542346899999999988877775
No 262
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=39.47 E-value=65 Score=37.27 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=61.4
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCcc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEV 965 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~v 965 (1522)
.-++||+-||.|.++.-+....-...+.++|+++.+++.-+.+ +......|+.. ++..+.+
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~-----------------~~~~~~f 90 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--GVDARTGDVRD-----------------WKPKPDT 90 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--CCcEEEcChhh-----------------CCCCCCc
Confidence 4579999999999888776652112478999999998876654 34444444322 1223579
Q ss_pred cEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEEecch
Q psy16462 966 EMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRN 1018 (1522)
Q Consensus 966 DvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmENV~g 1018 (1522)
|+|+.....+-+.. ...++. ++.+.++|.-.++=++++
T Consensus 91 D~v~~~~~l~~~~d------------~~~~l~---~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 91 DVVVSNAALQWVPE------------HADLLV---RWVDELAPGSWIAVQVPG 128 (255)
T ss_pred eEEEEehhhhhCCC------------HHHHHH---HHHHhCCCCcEEEEEcCC
Confidence 99999876554321 112333 345567787555434554
No 263
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=39.28 E-value=34 Score=38.02 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=41.6
Q ss_pred CCceEEeeecCCCcccccccccCCe-eEEEEEcCCHHHHHHHHhcCC---CcceEeCchh
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVA-RSTWAIEFDSAAAAAFKMNNP---GCTVFVDDCN 849 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~-~~~~ave~d~~A~~ty~~N~p---~~~v~~~di~ 849 (1522)
+...+||+.||.|+++.-+.+.+.- ..+.++|+++.++..-+.+++ ...+...|+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE 98 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh
Confidence 4578999999999999888776621 368999999999888877764 2334444444
No 264
>KOG3191|consensus
Probab=38.70 E-value=48 Score=36.83 Aligned_cols=75 Identities=28% Similarity=0.267 Sum_probs=49.6
Q ss_pred CceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHH----HHHhCCCCceeccchHHHHHHhhcccccccccccCCC
Q psy16462 887 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATA----FKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 961 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~t----y~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~ 961 (1522)
.-++++=||.|-.|.-+.+. |-.-..+|.|+|+.|+++ .+.|.-+..++..|...-+ .
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-----------------~ 107 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-----------------R 107 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-----------------c
Confidence 34678888888877665552 212577899999999865 4556555555555433221 2
Q ss_pred CCcccEEEeCCCCCccc
Q psy16462 962 KGEVEMLCGGPPCQGFS 978 (1522)
Q Consensus 962 ~g~vDvL~GGPPCQgFS 978 (1522)
++.||+|+--||=-+-|
T Consensus 108 ~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 108 NESVDVLVFNPPYVPTS 124 (209)
T ss_pred cCCccEEEECCCcCcCC
Confidence 36899999999965544
No 265
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=38.62 E-value=36 Score=37.83 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=37.1
Q ss_pred CCCceeeeeeccCCCCcccccCCCc-eEEEEEcccHHHHHHHHHhCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVA-RSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~-~~v~AvE~d~~A~~ty~~N~p 930 (1522)
+..+++|+.||.|.++.-+...+.. .-+.++|.++.++..-+.+.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 4578999999999998877776542 257899999999988888764
No 266
>PRK06202 hypothetical protein; Provisional
Probab=38.54 E-value=36 Score=38.76 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=34.6
Q ss_pred CCCceeeeeeccCCCCccccc----CCCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDK----SGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~----aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
...+++||-||.|+++..+.. .|..--+.++|+++.+++.-+.+.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc
Confidence 346899999999998877653 343235889999999998877764
No 267
>KOG1633|consensus
Probab=38.34 E-value=17 Score=48.52 Aligned_cols=47 Identities=17% Similarity=0.067 Sum_probs=41.4
Q ss_pred cccccccccccCCCCCCccccccccccCCCCccchhhhcccCCccccc
Q psy16462 302 KKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQ 349 (1522)
Q Consensus 302 ~~rc~~c~~c~~~~cg~c~~c~~~~kf~g~~~~~~~c~~r~c~~~~~~ 349 (1522)
..+|..|..|.+.+|+.|..|.+|.++|++|..+ +|..+.|......
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P-~~~i~~~~~p~~~ 574 (776)
T KOG1633|consen 528 ATESKKDFSRVRGDSANCDDKRDVLKEGETGLIP-AGPIHAVLTPVDS 574 (776)
T ss_pred hhhccccchhcccccccCCCccccccCCCcccCC-CCccccccccccc
Confidence 3489999999999999999999999999999999 8888888665443
No 268
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=37.70 E-value=36 Score=38.17 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=41.2
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC-CcceEeCchhH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP-GCTVFVDDCNK 850 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p-~~~v~~~di~~ 850 (1522)
+.++|||-||.|.++.-+.+.+....+.++|+++.+...-+.+.+ ...++..|+..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEK 91 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhh
Confidence 467999999999999888877643458999999988876666654 23444555543
No 269
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=37.65 E-value=25 Score=41.52 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=33.4
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N 928 (1522)
++||+-||.|..+.-+...|+ -+.|+|+++.|++..+.|
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~ 161 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEI 161 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHH
Confidence 799999999999988888885 478999999998876655
No 270
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=37.59 E-value=44 Score=39.24 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=47.8
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC---------CceeccchHHHHHHhhccccccccccc
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG---------CTVFVDDCNKILQRVIDNEVCDDKKQK 958 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~---------~~~~~~Di~~l~~~v~~g~i~~~~~~~ 958 (1522)
++++|.+|.|++..-+...+-...+.++|+|+...+..+.+++. ..+..+|...+++.
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~------------- 141 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD------------- 141 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-------------
Confidence 89999999999876665544235678999999998888777643 23334444443210
Q ss_pred CCCCCcccEEEeCCC
Q psy16462 959 LPRKGEVEMLCGGPP 973 (1522)
Q Consensus 959 lp~~g~vDvL~GGPP 973 (1522)
..+..|+|+..++
T Consensus 142 --~~~~yDvIi~D~~ 154 (270)
T TIGR00417 142 --TENTFDVIIVDST 154 (270)
T ss_pred --CCCCccEEEEeCC
Confidence 1247999998764
No 271
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=37.52 E-value=34 Score=38.08 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=35.5
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.-++||+=||.|.++.-|.+.| + .+.++|+++.|.+..+.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g-~-~V~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANG-F-DVTAWDKNPMSIANLERIK 72 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCC-C-EEEEEeCCHHHHHHHHHHH
Confidence 4689999999999999998888 3 6899999999888766553
No 272
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=37.30 E-value=32 Score=39.02 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=33.8
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAF 834 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty 834 (1522)
.-++||+.||.|--+.-|...| + .|.|+|+++.|++..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G-~-~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQG-H-RVLGVELSEIAVEQF 72 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCC-C-eEEEEeCCHHHHHHH
Confidence 3589999999999999999989 3 599999999999975
No 273
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=37.13 E-value=22 Score=40.13 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=38.5
Q ss_pred ceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchhHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKI 851 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~i 851 (1522)
-++|||=||.|+++.-+.+. |..-.+.|+|+++ ..+.|+..++++|+...
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~------~~~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP------MDPIVGVDFLQGDFRDE 103 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc------ccCCCCcEEEecCCCCh
Confidence 47999999999999877553 3234899999988 23457788888888764
No 274
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=36.48 E-value=34 Score=38.54 Aligned_cols=45 Identities=18% Similarity=0.034 Sum_probs=33.3
Q ss_pred CCceEEeeecCCCcccccccccC-CeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSG-VARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG-~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
+.-++|||.||.|.++.-|.+.. .--.++++|+++.+.+.-+.|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~ 122 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL 122 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 44589999999999998776542 1124899999998777655553
No 275
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=35.97 E-value=24 Score=39.90 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHH--HHhhcccccccccccCCCC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKIL--QRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~--~~v~~g~i~~~~~~~lp~~ 962 (1522)
.-++|||-||.|+++.-+.+. |-.-.+.|+|+++ ..+.|+..++++|+.... ..+. ..+ ..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~------~~~~~~v~~i~~D~~~~~~~~~i~---------~~~-~~ 115 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP------MDPIVGVDFLQGDFRDELVLKALL---------ERV-GD 115 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc------ccCCCCcEEEecCCCChHHHHHHH---------HHh-CC
Confidence 447999999999998766553 3224688999988 234577778888876531 1110 012 13
Q ss_pred CcccEEEeCC
Q psy16462 963 GEVEMLCGGP 972 (1522)
Q Consensus 963 g~vDvL~GGP 972 (1522)
+.+|+|+..+
T Consensus 116 ~~~D~V~S~~ 125 (209)
T PRK11188 116 SKVQVVMSDM 125 (209)
T ss_pred CCCCEEecCC
Confidence 5799999854
No 276
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=35.84 E-value=56 Score=38.34 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=41.7
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC---------CcceEeCchhHHHH
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP---------GCTVFVDDCNKILQ 853 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p---------~~~v~~~di~~i~~ 853 (1522)
++|+|.+|.|++..-+.+.+....+.++|+|+...+..+.+++ ...++..|...+++
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~ 140 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA 140 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH
Confidence 8999999999988766555435678999999988777777653 33455566666544
No 277
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=35.78 E-value=25 Score=35.11 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=32.9
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N 928 (1522)
..+++||.||.|.++.-+.+..-...+.++|.++.+++.-+.|
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 62 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN 62 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH
Confidence 4489999999999988776542113578999999988876665
No 278
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=35.67 E-value=27 Score=40.20 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=37.1
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGC 932 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~ 932 (1522)
...+++|+.||.|+++.-+.+.|. ..++|+|.++.....-..+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~~~~v 121 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQDERV 121 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhcCCCe
Confidence 345799999999999999999985 77899999997666544444543
No 279
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=35.37 E-value=27 Score=39.21 Aligned_cols=44 Identities=20% Similarity=0.076 Sum_probs=34.1
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p 930 (1522)
+..+++|+.||.|.++.-+...+ ..+.++|.++.+.+..+.|+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~ 121 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLK 121 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHH
Confidence 45789999999999887555554 257899999998887777653
No 280
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=34.74 E-value=29 Score=43.48 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=34.5
Q ss_pred ceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 796 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
-++||++||.||.++-+.+. + --.++|+|+++...+..+.|.
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~ 282 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENL 282 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHH
Confidence 47999999999999877553 2 237999999999988888875
No 281
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=34.54 E-value=31 Score=41.67 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=30.5
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHH
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAT 923 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ 923 (1522)
.-+++|+-||.|.++..+...|. ..+.++|.++....
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~ 159 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLC 159 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHH
Confidence 45899999999999988888886 55889999987554
No 282
>PRK04266 fibrillarin; Provisional
Probab=34.53 E-value=32 Score=39.42 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=38.5
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh---CCCCceeccch
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDC 939 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N---~p~~~~~~~Di 939 (1522)
+.-+++|+.||.|+++..+...--.-.++|+|+++.+.+....+ .++...+.+|+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~ 129 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA 129 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC
Confidence 45589999999999998887641123689999999877755443 34555555554
No 283
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=34.26 E-value=47 Score=38.23 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=85.1
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-------CCCceeccchHHHHHHhhcccccccccc
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-------PGCTVFVDDCNKILQRVIDNEVCDDKKQ 957 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-------p~~~~~~~Di~~l~~~v~~g~i~~~~~~ 957 (1522)
+.-+++|-|-|.|=.+.-....|. ..+..+|.|++..+.-..|= +...++.+|+-++.+.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~------------ 200 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD------------ 200 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc------------
Confidence 356899998887777776667786 56778999998887777762 2346677787766432
Q ss_pred cCCCCCcccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEEecchhh-hccchhHHHHHHHhhh
Q psy16462 958 KLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFV-AFKNSMVLKMTMRCLT 1036 (1522)
Q Consensus 958 ~lp~~g~vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmENV~g~l-s~~~~~~~~~~~~~l~ 1036 (1522)
++ ...+|+|+--|| -||.||. .++ -.++.++.|+ ++|.-=+|-=|-+=- ..+.-+..+.+++.|+
T Consensus 201 -~~-D~sfDaIiHDPP--RfS~Age----LYs---eefY~El~Ri---LkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr 266 (287)
T COG2521 201 -FD-DESFDAIIHDPP--RFSLAGE----LYS---EEFYRELYRI---LKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR 266 (287)
T ss_pred -CC-ccccceEeeCCC--ccchhhh----HhH---HHHHHHHHHH---cCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence 22 236999999998 6888874 221 2456666665 455433443332211 1222257778889999
Q ss_pred hccccc
Q psy16462 1037 QIGYQC 1042 (1522)
Q Consensus 1037 ~~gy~~ 1042 (1522)
+.||.+
T Consensus 267 ~vGF~~ 272 (287)
T COG2521 267 RVGFEV 272 (287)
T ss_pred hcCcee
Confidence 999864
No 284
>PRK06202 hypothetical protein; Provisional
Probab=34.24 E-value=47 Score=37.82 Aligned_cols=46 Identities=33% Similarity=0.437 Sum_probs=35.8
Q ss_pred CCCceEEeeecCCCcccccccc----cCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 793 ARPLRCLEVFAGAGGLSRGLDK----SGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 793 ~~~~~~ldLFaG~GGls~Gl~~----aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.+..++|||-||.|+++..|.+ .|.--.+.++|+++.+.+.-+.+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc
Confidence 3456899999999999887753 343236899999999998777765
No 285
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=34.09 E-value=42 Score=39.82 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=56.0
Q ss_pred CCceeeeeeccCCCCcccccCCC-ceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHHHhhcccccccccccC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~-~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
.-+++|++||.||-+.-+.+.-. .-.++|+|+++..+...+.|.- +..+...|...+....
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~------------- 152 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK------------- 152 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH-------------
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc-------------
Confidence 34599999999998865555321 2357899999999999887742 3333344544442111
Q ss_pred CCCCcccEEEeCCCCCccccccc
Q psy16462 960 PRKGEVEMLCGGPPCQGFSGMNR 982 (1522)
Q Consensus 960 p~~g~vDvL~GGPPCQgFS~agr 982 (1522)
....+|.|.--+||.|.-...|
T Consensus 153 -~~~~fd~VlvDaPCSg~G~i~r 174 (283)
T PF01189_consen 153 -PESKFDRVLVDAPCSGLGTIRR 174 (283)
T ss_dssp -HTTTEEEEEEECSCCCGGGTTT
T ss_pred -cccccchhhcCCCccchhhhhh
Confidence 1125899999999999866655
No 286
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=33.94 E-value=32 Score=38.22 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=31.9
Q ss_pred CCCCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHH
Q psy16462 792 IARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAF 834 (1522)
Q Consensus 792 ~~~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty 834 (1522)
+.+.=.|||.|||.|-......+.| +--.++|+++..++.-
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIA 229 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHh
Confidence 4445679999999999999999999 6688999999888753
No 287
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=33.42 E-value=53 Score=36.65 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=39.3
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC-----CCCceeccchHHH
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKI 942 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~-----p~~~~~~~Di~~l 942 (1522)
-.++|+=||+|+++.=+..+|-.--++|+|-++.|+++.+.|. ++..+..+|..+.
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 3678987777766665554465556889999999999999994 4445555554443
No 288
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.76 E-value=54 Score=40.08 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=42.0
Q ss_pred CCceeeeeeccC--CCCcccccCCCceEEEEEcccHHHHHHHHHhCC-----CCceeccchHHHHH
Q psy16462 886 PLRCLEVFAGAG--GLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQ 944 (1522)
Q Consensus 886 ~l~~iDLFsG~G--Gls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p-----~~~~~~~Di~~l~~ 944 (1522)
..+++|-|||.| |+....+. |. .-++++|+++.|+++.+.|.- +..+++.|.+.++.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~ 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-Cc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH
Confidence 567899999988 44444433 33 378999999999999998842 45567788888853
No 289
>PLN02244 tocopherol O-methyltransferase
Probab=32.33 E-value=40 Score=41.02 Aligned_cols=43 Identities=30% Similarity=0.333 Sum_probs=32.9
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhc
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN 837 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N 837 (1522)
..-++|||-||.|+++.-|.+.. --.+.++|+++.+.+.-+.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANAL 160 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHH
Confidence 34579999999999998887642 13678999999877755544
No 290
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=32.30 E-value=54 Score=36.42 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=43.2
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHh-----cCCCcceEeCchhHHHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKM-----NNPGCTVFVDDCNKILQ 853 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~-----N~p~~~v~~~di~~i~~ 853 (1522)
.-.+|||-||.|.++..+.+..--..+.++|+++.+.+.-+. +..+..+++.|+.+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~ 80 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD 80 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH
Confidence 347999999999999888775423468999999876543322 24566778888887753
No 291
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=31.94 E-value=43 Score=37.25 Aligned_cols=56 Identities=18% Similarity=0.051 Sum_probs=38.2
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNK 850 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~ 850 (1522)
..++|||=||+|.+++-+......-.+.++|.++.+.+.-+.|. ++..+++.|+.+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~ 106 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE 106 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh
Confidence 56899999999999887765322347999999987666544442 234445555544
No 292
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=31.60 E-value=45 Score=38.96 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=32.8
Q ss_pred CceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhc
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMN 837 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N 837 (1522)
.-++|||-||.|.++.-+.+. |..-.+.++|+++...+.-+.+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r 117 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASR 117 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 458999999999998776543 4223789999999887766544
No 293
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=31.53 E-value=32 Score=38.62 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
.-++||+.||.|.++.-+.+. +-...+.++|+++.+++.-+.|.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l 117 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI 117 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 357999999999987655442 21125789999999877666654
No 294
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=30.99 E-value=37 Score=43.68 Aligned_cols=55 Identities=18% Similarity=0.076 Sum_probs=39.5
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC------CcceEeCchh
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP------GCTVFVDDCN 849 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p------~~~v~~~di~ 849 (1522)
..++|||.||.|.+++.+...---..+.++|+++.|.+.-+.|.. ...+++.|+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~ 199 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWF 199 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchh
Confidence 357999999999999887643112368999999999988777742 2344556653
No 295
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=30.75 E-value=44 Score=37.55 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=36.2
Q ss_pred CCCceeeeeeccCCCCcccccCCC-ceEEEEEcccHHHHHHHHHhCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~-~~~v~AvE~d~~A~~ty~~N~p 930 (1522)
+..+++|+.||.|.++.-+...+- ...+.++|.++.+.+.-+.|..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 356899999999999887766652 2467899999998888777754
No 296
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=30.63 E-value=7.9 Score=47.59 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred EEEEEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhhcccccccCCCCCCCCCceeeEEEEEEecc
Q psy16462 582 NCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKK 661 (1522)
Q Consensus 582 ~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yrk~~~~~~GsN~~~~~p~~IgrI~~I~~~~ 661 (1522)
..+.+.+..+++|+.+.+.+.. ......++.+..+|...
T Consensus 268 ~~~~i~~~~~~~~~~~~~~~~~-----------------------------------------~~~~p~~~~~~~~~~~~ 306 (371)
T COG5076 268 ESVLITNSQAHVGAWPFLRPVS-----------------------------------------DEEVPDYYKDIRDPMDL 306 (371)
T ss_pred hhhcccccccccccccccccCC-----------------------------------------cccccchhhhhhccccc
Q ss_pred CCCCcCCCceEEEEEEeecccCCCCCcccccccCcceEEeeccceeeeccceeeeEEEeecCCc
Q psy16462 662 GKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNL 725 (1522)
Q Consensus 662 ~~~~~~~~~~~v~V~wfYRPeDt~~~~~~~~~~D~rELf~S~e~d~vpv~~I~GKC~V~~~~d~ 725 (1522)
. ...+.-++|||||+.+.......+. .+++.+....+...+....+.|+|.+..++
T Consensus 307 ~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (371)
T COG5076 307 S------TKELKLRNNYYRPEETFVRDAKLFF--DNCVMYNGEVTDYYKNANVLEDFVIKKTRL 362 (371)
T ss_pred c------cchhhhhcccCCCccccccccchhh--hcccccchhhhhhhhhccchhhhHhhhhhh
No 297
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=30.13 E-value=45 Score=38.96 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=32.5
Q ss_pred CCCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHh
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N 928 (1522)
+.-++||+.||.|.++.-+... |..-.+.++|+++.+.+..+.+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r 117 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASR 117 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3458999999999987655442 3223578999999998877654
No 298
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=29.35 E-value=52 Score=39.74 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=30.5
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAA 832 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ 832 (1522)
-++|||=||.|.++..+...| ...+.++|.++....
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~ 159 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLC 159 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHH
Confidence 479999999999999998888 566999999986443
No 299
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=29.13 E-value=50 Score=37.66 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=33.6
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHH
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFK 835 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~ 835 (1522)
-++||+.||.|--++-|.+.| + .|.|||+++.|++.+.
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G-~-~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQG-H-EVLGVELSELAVEQFF 76 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCC-C-eEEEEccCHHHHHHHH
Confidence 489999999999999998888 3 5999999999999753
No 300
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=28.74 E-value=37 Score=38.16 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=36.9
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p 930 (1522)
+..++||+.||.|.++..+...|. + +.++|+++.+++..+.+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~-~-v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA-K-VVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHHH
Confidence 456899999999999998888875 4 8899999999888777653
No 301
>PLN02244 tocopherol O-methyltransferase
Probab=28.49 E-value=48 Score=40.32 Aligned_cols=42 Identities=31% Similarity=0.412 Sum_probs=32.8
Q ss_pred CCCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHh
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N 928 (1522)
+.-++||+.||.|+++.-+... |. -+.++|+++.+++.-+.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~--~v~gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA--NVKGITLSPVQAARANAL 160 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC--EEEEEECCHHHHHHHHHH
Confidence 3457999999999999877764 43 567999999987766554
No 302
>PRK04148 hypothetical protein; Provisional
Probab=28.16 E-value=52 Score=34.85 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=38.2
Q ss_pred CCceeeeeeccCC-CCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccch
Q psy16462 886 PLRCLEVFAGAGG-LSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDC 939 (1522)
Q Consensus 886 ~l~~iDLFsG~GG-ls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di 939 (1522)
..+++++=+|.|. ++.-|.+.|+ -+.|+|+++.|++..+.+. ...+.+|+
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~--~~~v~dDl 67 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLG--LNAFVDDL 67 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhC--CeEEECcC
Confidence 3679999889775 7878888886 5779999999999887773 34444554
No 303
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=28.10 E-value=35 Score=43.92 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=35.6
Q ss_pred CCceEEeeecCCCccccccccc--------CCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKS--------GVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~a--------G~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
...+++|.+||+|+|-..+... ++-..++++|+|+.|....+.|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 4578999999999999887532 22246899999999999877774
No 304
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=28.07 E-value=44 Score=39.13 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=38.5
Q ss_pred CceeeeeeccCCCCcccccCCC---ceEEEEEcccHHHHHHHHHhCCCCceeccc
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGV---ARSTWAIEFDSAAATAFKMNNPGCTVFVDD 938 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~---~~~v~AvE~d~~A~~ty~~N~p~~~~~~~D 938 (1522)
.+++|+-||.|.++..+....- .-.+.++|+++.+++.-+.+.|+......|
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d 141 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVAS 141 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEee
Confidence 4689999999988777654311 024689999999999888888876655554
No 305
>PRK08317 hypothetical protein; Provisional
Probab=28.02 E-value=64 Score=36.05 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=33.5
Q ss_pred CCCceeeeeeccCCCCcccccCC-CceEEEEEcccHHHHHHHHHh
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSG-VARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG-~~~~v~AvE~d~~A~~ty~~N 928 (1522)
+..+++|+.||.|.++..+.... -...+.++|+++.....-+.+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 45689999999999888776542 123578999999887776665
No 306
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=27.92 E-value=67 Score=36.03 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=34.3
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
...+++|+.||.|.+..-+.+.|. + +.++|.++.++...+.|.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~-v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-N-VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-e-EEEEeCCHHHHHHHHHHH
Confidence 467899999999998887777775 4 779999998877766653
No 307
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=27.86 E-value=69 Score=37.02 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=32.4
Q ss_pred CCceeeeeeccCCCCccccc----CCCceEEEEEcccHHHHHHHHHhC
Q psy16462 886 PLRCLEVFAGAGGLSRGLDK----SGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~----aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
.-+++|+-||.|.+...+.. .+ -.+.++|+++.+++.-+.|.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~ 102 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHI 102 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHH
Confidence 45799999999998766644 23 25779999999998887775
No 308
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=27.72 E-value=78 Score=35.87 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=34.6
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
+..++||+.||.|.++.-+...|. .+.++|.++.++..-+.|.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHH
Confidence 456899999999999888877774 3788999999887766654
No 309
>KOG1270|consensus
Probab=27.72 E-value=58 Score=38.16 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=36.7
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhc
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN 837 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N 837 (1522)
+++||+=||.|-||.-|.+.| ..+.++|..+.+.++++..
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHh
Confidence 559999999999999999999 6889999999999998876
No 310
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=27.59 E-value=58 Score=41.25 Aligned_cols=58 Identities=28% Similarity=0.266 Sum_probs=42.5
Q ss_pred CCceEEeeecCCCcccccccccC----CeeEEEEEcCCHHHHHHHHh----c-C-CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSG----VARSTWAIEFDSAAAAAFKM----N-N-PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG----~~~~~~ave~d~~A~~ty~~----N-~-p~~~v~~~di~~i 851 (1522)
+...|+|+=||-|.|+.-.-+|| ....++|||.++.|..+.+. | + ....|+++|++++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 45789999999999997665554 36789999999999988732 3 3 3467788888877
No 311
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=27.59 E-value=60 Score=36.48 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=36.9
Q ss_pred CCceEEeeecCCCcccccccccCC-eeEEEEEcCCHHHHHHHHhcCC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAAAAFKMNNP 839 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~-~~~~~ave~d~~A~~ty~~N~p 839 (1522)
+..++||+-||.|+++.-+...+. ...+.++|+++.+.+.-+.++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 347899999999999988876652 3578999999988887777753
No 312
>PRK08317 hypothetical protein; Provisional
Probab=27.37 E-value=69 Score=35.76 Aligned_cols=44 Identities=25% Similarity=0.164 Sum_probs=33.2
Q ss_pred CCceEEeeecCCCcccccccccC-CeeEEEEEcCCHHHHHHHHhc
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSG-VARSTWAIEFDSAAAAAFKMN 837 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG-~~~~~~ave~d~~A~~ty~~N 837 (1522)
...++||+-||.|+++..+.... ....+.++|+++...+.-+.+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 45689999999999998886542 234688999999876655554
No 313
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=27.31 E-value=90 Score=37.43 Aligned_cols=58 Identities=21% Similarity=0.096 Sum_probs=43.8
Q ss_pred CCceeeeeeccCCCCcccccCCC-ceEEEEEcccHHHHHHHHHhCC---CCceeccchHHHH
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNP---GCTVFVDDCNKIL 943 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~-~~~v~AvE~d~~A~~ty~~N~p---~~~~~~~Di~~l~ 943 (1522)
.-.+||.-+|.||.|..+....- .-.+.|+|.|+.|.+..+.+.. ....+.+|...+.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLK 81 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHH
Confidence 34789999999999999987641 1358899999999998876642 3456667766654
No 314
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=27.31 E-value=1e+02 Score=35.90 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCC-----CceeccchHHHHHHhhcccccccccccC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQKL 959 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~-----~~~~~~Di~~l~~~v~~g~i~~~~~~~l 959 (1522)
+..++||+.||.|-+++.+....-.--+.++|+++.....-+....+ ...+.+|...+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L----------------- 113 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL----------------- 113 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----------------
Q ss_pred CCCC-cccEEEeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEE
Q psy16462 960 PRKG-EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLE 1014 (1522)
Q Consensus 960 p~~g-~vDvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmE 1014 (1522)
|.+. .+|++.-+. +-..-......+.++.|+++.-- ++.++|
T Consensus 114 Pf~D~sFD~vt~~f------------glrnv~d~~~aL~E~~RVlKpgG-~~~vle 156 (238)
T COG2226 114 PFPDNSFDAVTISF------------GLRNVTDIDKALKEMYRVLKPGG-RLLVLE 156 (238)
T ss_pred CCCCCccCEEEeee------------hhhcCCCHHHHHHHHHHhhcCCe-EEEEEE
No 315
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=27.27 E-value=72 Score=35.27 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=35.0
Q ss_pred ceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcceEeCchh
Q psy16462 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCN 849 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~ 849 (1522)
-++|||-||.|.+..-+.+.+ ...++++|+++.+.+..+.+ +..+++.|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~--~~~~~~~d~~ 65 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR--GVNVIQGDLD 65 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc--CCeEEEEEhh
Confidence 479999999999987775543 22458999999877765543 2334444443
No 316
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=27.16 E-value=1.2e+02 Score=35.37 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=34.6
Q ss_pred CCCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhCC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP 930 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~p 930 (1522)
+..++||+-||.|+++.-+... |. .+.++|+++.++..-+.+.+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~--~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGA--HVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCC--EEEEEECCHHHHHHHHHHcC
Confidence 5678999999999988766442 43 57899999999888877754
No 317
>PRK06922 hypothetical protein; Provisional
Probab=27.11 E-value=61 Score=42.74 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=39.4
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCC----CcceEeCchhH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP----GCTVFVDDCNK 850 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p----~~~v~~~di~~ 850 (1522)
..++||+.||.|.++.-+.+...-..+.++|+++.+.+..+.+.+ ...++++|+..
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~d 478 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAIN 478 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHh
Confidence 458999999999998777653212467899999998887776542 23445566554
No 318
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=26.55 E-value=46 Score=34.48 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=36.0
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
++||+-||.|-+++.+.+.+.-..++++|.++.+.+.++.|+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH
Confidence 479999999999999988773348999999999998888875
No 319
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=26.24 E-value=57 Score=38.30 Aligned_cols=52 Identities=29% Similarity=0.258 Sum_probs=42.7
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC---CCCceeccch
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDC 939 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~---p~~~~~~~Di 939 (1522)
.=++|++=.|.|+|..-+.+.+. .+.|+|+|+.-+..++..+ ++..++.+|+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da 85 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDA 85 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCch
Confidence 34689999999999999999885 4889999999999998876 3455666664
No 320
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=26.03 E-value=41 Score=36.64 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCceEEeeecCCCcccccccccC-CeeEEEEEcCCHHHHHHHHhcCCCcceEeCch
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSG-VARSTWAIEFDSAAAAAFKMNNPGCTVFVDDC 848 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG-~~~~~~ave~d~~A~~ty~~N~p~~~v~~~di 848 (1522)
...++|||-|+.||++.-+.+.+ ....++|+|+.+. ...+....+.+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~ 72 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDI 72 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeeccc
Confidence 56899999999999998887765 4578999999886 2234445555555
No 321
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=26.03 E-value=83 Score=37.71 Aligned_cols=60 Identities=22% Similarity=0.107 Sum_probs=46.7
Q ss_pred CCceEEeeecCCCcccccccccCC-eeEEEEEcCCHHHHHHHHhcCC---CcceEeCchhHHHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAAAAFKMNNP---GCTVFVDDCNKILQ 853 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~-~~~~~ave~d~~A~~ty~~N~p---~~~v~~~di~~i~~ 853 (1522)
+.-.+||.=||.||.+..+-+..- --.+.|+|.|+.|.+.-+.+.. ...+++.|..++..
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE 82 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence 345899999999999999977631 1369999999999987776652 45678888888754
No 322
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=25.90 E-value=1.1e+02 Score=41.80 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=86.1
Q ss_pred CceEEEEEEEcCeEEEecCeEEECCCCccccCCCccccccCCCCCcCccchhhhhh-cccccccCCCC---CCCCCceee
Q psy16462 577 THEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYR-KLSDYMKGSNA---YTPAPFGIG 652 (1522)
Q Consensus 577 ~~~~y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~de~~ype~yr-k~~~~~~GsN~---~~~~p~~Ig 652 (1522)
.-+.|+++.+|+++|.+||.|.|--+.-.- .|- ++++.....|. ...-...-|
T Consensus 439 ~g~iye~~~in~~~ys~g~dv~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~y~l~kg 495 (1164)
T PTZ00112 439 DGVIYESIQINDVEYSIGDDVLIFCTGNGN-----------------------TYNGKSGTKKNQNNKNIKENIYQLRKG 495 (1164)
T ss_pred CceEEEEEEEcceeeccCCcEEEEEcCCCC-----------------------ccccccCccccccccchhhhhheeccc
Confidence 356799999999999999999885442100 000 01111111111 001123457
Q ss_pred EEEEEEeccCCCCcCCCceEEEEEEeecccCCCCCcc----------cc----cc-cCcceEEeec--cceeeeccceee
Q psy16462 653 YIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVE----------FT----YQ-LDLNKLYWSD--EEEQVSLSDVQG 715 (1522)
Q Consensus 653 rI~~I~~~~~~~~~~~~~~~v~V~wfYRPeDt~~~~~----------~~----~~-~D~rELf~S~--e~d~vpv~~I~G 715 (1522)
+|..++...++ ..+...|+-||--.|...... +. +. .+.++.|+-- +...+....|.-
T Consensus 496 ~is~fy~~~~~-----~~~~~e~c~y~d~~d~~~i~~~~~~~~~rr~~~~f~~~~d~~~~~~~llgni~f~~~~~~~i~k 570 (1164)
T PTZ00112 496 KISSFYKNTNS-----NQVEAEVCIYYDQHDAQYIKELEEKQKSRRCKADFEVFLDDDTKNFYLLGNIHFKILDAKMILK 570 (1164)
T ss_pred ccchhhhcCCC-----ceeeEEEEEEEccccHHHHHHHHHHHHhhhhhhhhhHhcccccceeEEecceeEEEechHhhhh
Confidence 89898877654 778899999997665321000 00 01 1234444433 345666667777
Q ss_pred eEEEeecCCccccccccccCCCCeEEEeeeccCCCCceecCC
Q psy16462 716 KCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLP 757 (1522)
Q Consensus 716 KC~V~~~~d~~~~~~~~~~~~~d~Fyc~~~Yd~~~~~f~~lP 757 (1522)
|-+|..-....... .-...+.|-|.|.+.--.+...+-.++
T Consensus 571 ki~~~ne~~~~~~d-~~~~~g~~kflc~~~~k~~~~~~~~~~ 611 (1164)
T PTZ00112 571 KIYVYNEKELYDED-KTAKQGKDKFLCTHYLKEREERICFIQ 611 (1164)
T ss_pred hheeecchhhcccc-hhhhcccchhhhhHhhhcchhheeecc
Confidence 87776655443212 333357788999876666666666665
No 323
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=25.84 E-value=74 Score=35.65 Aligned_cols=43 Identities=30% Similarity=0.334 Sum_probs=34.2
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
...++|||-||.|.+..-+.+.+ .. +.++|.++.+....+.+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-~~-v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-AN-VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-Ce-EEEEeCCHHHHHHHHHHH
Confidence 35689999999999988887776 44 889999998777666553
No 324
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=25.75 E-value=71 Score=37.42 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=43.0
Q ss_pred CCceEEeeecCCCcccccccccCC---eeEEEEEcCCHHHHHHHHhcCCCcceEeCchhH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGV---ARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNK 850 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~---~~~~~ave~d~~A~~ty~~N~p~~~v~~~di~~ 850 (1522)
..-.+||+=||.|.+...|.+... ...+.++|+++.|.+.-+.++|+..+...|+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~ 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHR 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeeccc
Confidence 345799999999999888765321 125799999999998888888877766666544
No 325
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=25.73 E-value=59 Score=39.24 Aligned_cols=38 Identities=18% Similarity=0.063 Sum_probs=30.8
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHH
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 924 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~t 924 (1522)
.-+++|+=||.|.+...+...|. ..+.++|.++.....
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q 159 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQ 159 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHH
Confidence 45899999999999888888886 567899999876544
No 326
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=25.61 E-value=57 Score=37.05 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHH
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFK 926 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~ 926 (1522)
+.-++||+.||.|--+.-|...|+ -|.|+|+++.|++...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFF 73 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHH
Confidence 346899999999999999999997 5789999999999753
No 327
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=25.50 E-value=66 Score=33.55 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=35.2
Q ss_pred CCCCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHH
Q psy16462 792 IARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAA 833 (1522)
Q Consensus 792 ~~~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~t 833 (1522)
..+..++|||=||.|.+...+.+.| + .+.++|+++.+...
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG-F-EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT-S-EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC-C-EEEEEECCHHHHhh
Confidence 3556799999999999999999999 4 78899999999887
No 328
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=25.42 E-value=49 Score=40.25 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=57.9
Q ss_pred CceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCc-c
Q psy16462 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE-V 965 (1522)
Q Consensus 887 l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~-v 965 (1522)
=.++|=|||.||+-.-...-|. + +.++|++...+.--+.|.-.-.+ .|.. +..+ . +...+|.++. +
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G~-~-viG~Did~~mv~gak~Nl~~y~i--~~~~-----~~~~--~--Da~~lpl~~~~v 265 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMGA-R-VIGSDIDERMVRGAKINLEYYGI--EDYP-----VLKV--L--DATNLPLRDNSV 265 (347)
T ss_pred CEeecCcCCccHHHHhhhhcCc-e-EeecchHHHHHhhhhhhhhhhCc--Ccee-----EEEe--c--ccccCCCCCCcc
Confidence 3689999999999776666665 4 45679999999999998643210 0000 0001 0 1123444444 9
Q ss_pred cEEEeCCCCCccccccccCccccccchhhhHHHHHHHHH
Q psy16462 966 EMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 1004 (1522)
Q Consensus 966 DvL~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~ 1004 (1522)
|-|+.-|| .||... -....-..|+..+++.+.
T Consensus 266 daIatDPP------YGrst~-~~~~~l~~Ly~~~le~~~ 297 (347)
T COG1041 266 DAIATDPP------YGRSTK-IKGEGLDELYEEALESAS 297 (347)
T ss_pred ceEEecCC------CCcccc-cccccHHHHHHHHHHHHH
Confidence 99999999 343211 111223567777665443
No 329
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=25.34 E-value=75 Score=28.36 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=25.8
Q ss_pred EecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecc
Q psy16462 413 VKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQ 459 (1522)
Q Consensus 413 ~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~ 459 (1522)
|++||.|.+.+..+.. -|.+.-....... -|+.++||--..
T Consensus 1 f~~GDvV~LKSGGp~M-----TV~~v~~~~~~~~-~~v~C~WFd~~~ 41 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRM-----TVTEVGPNAGASG-GWVECQWFDGHG 41 (53)
T ss_pred CCCCCEEEEccCCCCe-----EEEEccccccCCC-CeEEEEeCCCCC
Confidence 5789999999987643 2333322210222 789999997543
No 330
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=25.20 E-value=50 Score=39.30 Aligned_cols=46 Identities=24% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCCceEEeeecCCCccccccccc-------CCeeEEEEEcCCHHHHHHHHhc
Q psy16462 792 IARPLRCLEVFAGAGGLSRGLDKS-------GVARSTWAIEFDSAAAAAFKMN 837 (1522)
Q Consensus 792 ~~~~~~~ldLFaG~GGls~Gl~~a-------G~~~~~~ave~d~~A~~ty~~N 837 (1522)
....-+++|.+||.|||-..+.+. ..-..++++|+++.++..=+.|
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHH
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhh
Confidence 344567999999999998776541 1135789999999998765555
No 331
>COG5475 Uncharacterized small protein [Function unknown]
Probab=24.80 E-value=2e+02 Score=26.01 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=25.8
Q ss_pred EEEecCCEEEEecCCCCCCCcEEEEEEEecccCCCeeeEEEEEEeeecc
Q psy16462 411 EEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQ 459 (1522)
Q Consensus 411 ~~~~vGD~V~V~~~d~~~p~~IarIe~m~e~~~~G~~k~~h~~Wf~R~~ 459 (1522)
.++++||.|.|....+.. |..=+.+ +| |+.++||-+..
T Consensus 3 ~~FstgdvV~lKsGGP~M------tvs~~ss--~G---my~C~Wf~g~g 40 (60)
T COG5475 3 MSFSTGDVVTLKSGGPRM------TVSGYSS--DG---MYECRWFDGYG 40 (60)
T ss_pred ceeecCcEEEeecCCceE------EEecccc--CC---eEEEEEecCCC
Confidence 578999999999887532 1221222 34 69999998854
No 332
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=24.73 E-value=31 Score=38.30 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=30.0
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHH
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAF 925 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty 925 (1522)
.|||.|+|.|....+..+.|. -..++|+++..++.-
T Consensus 194 iVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 194 IVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIA 229 (231)
T ss_dssp EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHH
T ss_pred eeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHh
Confidence 589999999999999999994 567999999998764
No 333
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.49 E-value=71 Score=37.53 Aligned_cols=55 Identities=29% Similarity=0.247 Sum_probs=46.9
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC---CCcceEeCchhHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN---PGCTVFVDDCNKI 851 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~---p~~~v~~~di~~i 851 (1522)
.=.+|++=+|.|+|..-|-+.+ ..+.|+|+|+.-+..++..+ .+..++++|+-.+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcC
Confidence 5679999999999999998887 35999999999999988876 4567788888766
No 334
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=24.27 E-value=77 Score=35.83 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=33.7
Q ss_pred CCCceeeeeeccCCCCcccccC-CCceEEEEEcccHHHHHHHHHhC
Q psy16462 885 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN 929 (1522)
Q Consensus 885 ~~l~~iDLFsG~GGls~G~~~a-G~~~~v~AvE~d~~A~~ty~~N~ 929 (1522)
+.-+++|+.||.|.++.-+... |-.-.+.++|+++..++.-+.|.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4458999999999988655443 32236789999999888777764
No 335
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=24.23 E-value=54 Score=36.77 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=32.6
Q ss_pred CceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
.-++||+.||.|.++.-+.+. +....++++|+++.+.+.-+.|+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l 117 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI 117 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 357999999999998766543 21236999999998776555554
No 336
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=23.92 E-value=72 Score=38.67 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=32.9
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
...++|||=||+|++..-+...-.--.+.|+|+|+.|++.-+.|.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 457899999999988755533211135789999999988777764
No 337
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=23.83 E-value=91 Score=35.89 Aligned_cols=63 Identities=14% Similarity=-0.053 Sum_probs=43.7
Q ss_pred CCCceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcCC------CcceEeCchhHHHHhh
Q psy16462 793 ARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNNP------GCTVFVDDCNKILQRV 855 (1522)
Q Consensus 793 ~~~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~p------~~~v~~~di~~i~~~~ 855 (1522)
...-++||+.+|+|.-++.+..+ +.--.+.++|+++.+.+.-+.|+. ...++.+|+.+++...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 34558999999999855544332 112279999999998887777752 3456778888776543
No 338
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=23.66 E-value=79 Score=35.81 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=34.3
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
+...+|||.||.|.++.-+.+.| . .+.++|+++.+...-+.|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~-~-~v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG-A-DVTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC-C-eEEEEcCCHHHHHHHHHHH
Confidence 45679999999999998887777 3 4788999998877655554
No 339
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=23.63 E-value=70 Score=37.08 Aligned_cols=48 Identities=27% Similarity=0.272 Sum_probs=40.1
Q ss_pred CCCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcc
Q psy16462 793 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCT 842 (1522)
Q Consensus 793 ~~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~ 842 (1522)
...+++||+=||.|-||.-+.+.| -.|.++|+.+.+.++=+..-.+..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~g 105 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESG 105 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcc
Confidence 457899999999999999999999 678899999999987776554433
No 340
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=23.18 E-value=75 Score=35.11 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCcc
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEV 965 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~v 965 (1522)
.-+++|+.||.|.+..-+...+. ..++++|.++.++...+.+ +...+..|+...+ ..+ ..+.+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~--~~~~~~~d~~~~l-------------~~~-~~~sf 76 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR--GVNVIQGDLDEGL-------------EAF-PDKSF 76 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc--CCeEEEEEhhhcc-------------ccc-CCCCc
Confidence 34799999999998877754433 2357999999888776543 2344444442210 011 13579
Q ss_pred cEEEeCCCCC
Q psy16462 966 EMLCGGPPCQ 975 (1522)
Q Consensus 966 DvL~GGPPCQ 975 (1522)
|+|+.....+
T Consensus 77 D~Vi~~~~l~ 86 (194)
T TIGR02081 77 DYVILSQTLQ 86 (194)
T ss_pred CEEEEhhHhH
Confidence 9999876544
No 341
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=22.28 E-value=72 Score=38.16 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=45.9
Q ss_pred ceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC----CCC-ceeccchHHHHHHhhcccccccccccCCCC
Q psy16462 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN----PGC-TVFVDDCNKILQRVIDNEVCDDKKQKLPRK 962 (1522)
Q Consensus 888 ~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~----p~~-~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~ 962 (1522)
+++||-||.|-++.-+....-..-+..+|+|..|++.-+.|- +.. .++..|+-+ +-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~------------------~v~ 222 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE------------------PVE 222 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc------------------ccc
Confidence 899999999988776666442234567999998888777663 333 333333211 123
Q ss_pred CcccEEEeCCC
Q psy16462 963 GEVEMLCGGPP 973 (1522)
Q Consensus 963 g~vDvL~GGPP 973 (1522)
+++|+|+--||
T Consensus 223 ~kfd~IisNPP 233 (300)
T COG2813 223 GKFDLIISNPP 233 (300)
T ss_pred ccccEEEeCCC
Confidence 48999999998
No 342
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=22.17 E-value=91 Score=37.67 Aligned_cols=37 Identities=22% Similarity=0.096 Sum_probs=30.8
Q ss_pred CceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHH
Q psy16462 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAA 832 (1522)
Q Consensus 795 ~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ 832 (1522)
.-++||+=||.|.+...+...| ...+.++|.++....
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~ 158 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLC 158 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHH
Confidence 3589999999999999988888 567899999986443
No 343
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=21.96 E-value=80 Score=36.47 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=37.9
Q ss_pred ceEEeeecCCCcccccccc--cCCeeEEEEEcCCHHHHHHHHhcCC------CcceEeCchhH
Q psy16462 796 LRCLEVFAGAGGLSRGLDK--SGVARSTWAIEFDSAAAAAFKMNNP------GCTVFVDDCNK 850 (1522)
Q Consensus 796 ~~~ldLFaG~GGls~Gl~~--aG~~~~~~ave~d~~A~~ty~~N~p------~~~v~~~di~~ 850 (1522)
-++|||=||.|.+...+.+ ..---.+.++|+++.+.+.-+.|.. ...+++.|+.+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~ 120 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 120 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh
Confidence 5799999999998877654 1112368999999988877666642 23445555543
No 344
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=21.80 E-value=84 Score=40.08 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=42.1
Q ss_pred CCceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC-----CCcceEeCchhHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKI 851 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~-----p~~~v~~~di~~i 851 (1522)
+.-+|||++||.||=+.-+... +.--.++|+|+++.-.+..+.|. .+..+.+.|...+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~ 176 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF 176 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence 3457999999999999877542 11127999999999888887774 4455666666554
No 345
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=21.45 E-value=90 Score=34.73 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=35.6
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhc
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN 837 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N 837 (1522)
.+.++||+=||.|-++.-|.+.| . .+.++|+++.|.+..+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g-~-~V~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG-Y-DVRAWDHNPASIASVLDM 71 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC-C-eEEEEECCHHHHHHHHHH
Confidence 34689999999999999998888 3 689999999998876654
No 346
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=20.87 E-value=99 Score=28.88 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=37.7
Q ss_pred EeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcCCCcc--eEeCchhH
Q psy16462 799 LEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCT--VFVDDCNK 850 (1522)
Q Consensus 799 ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~p~~~--v~~~di~~ 850 (1522)
|||=||.|-++..|.+.+ ...++++|+++.+.+.-+.+..... +.+.|+..
T Consensus 1 LdiG~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG-GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHTT-TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTS
T ss_pred CEecCcCCHHHHHHHhcc-CCEEEEEeCCHHHHHHHHhcccccCchheeehHHh
Confidence 688899999998888884 5789999999999998888876544 44444433
No 347
>PLN02823 spermine synthase
Probab=20.83 E-value=4.5e+02 Score=32.20 Aligned_cols=122 Identities=11% Similarity=0.186 Sum_probs=0.0
Q ss_pred cCCCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhC---------CCCceeccchHHHHHHhhccccccc
Q psy16462 884 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---------PGCTVFVDDCNKILQRVIDNEVCDD 954 (1522)
Q Consensus 884 ~~~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~---------p~~~~~~~Di~~l~~~v~~g~i~~~ 954 (1522)
...-+++.|=.|.|++..-+....-.+-+.++|+|+...+.-+.++ |+..++.+|...+++.
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~--------- 172 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK--------- 172 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh---------
Q ss_pred ccccCCCCCcccEEEeCC--C---CCccccccccCccccccchhhhHHHHHH--HHHhhCCCEEEEEecchhhhccchhH
Q psy16462 955 KKQKLPRKGEVEMLCGGP--P---CQGFSGMNRFNQRQYSAFKNSLIVSYLS--YCDYYRPRFFLLENVRNFVAFKNSMV 1027 (1522)
Q Consensus 955 ~~~~lp~~g~vDvL~GGP--P---CQgFS~agr~~~~~~~d~rn~L~~~~lr--~I~~~rPk~FvmENV~g~ls~~~~~~ 1027 (1522)
..+..|+|+.-. | .+++....+ +|++ +.+.++|.-+++=|+.....+.+...
T Consensus 173 ------~~~~yDvIi~D~~dp~~~~~~~~Lyt~---------------eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~ 231 (336)
T PLN02823 173 ------RDEKFDVIIGDLADPVEGGPCYQLYTK---------------SFYERIVKPKLNPGGIFVTQAGPAGILTHKEV 231 (336)
T ss_pred ------CCCCccEEEecCCCccccCcchhhccH---------------HHHHHHHHHhcCCCcEEEEeccCcchhccHHH
Q ss_pred HHHHHHhh
Q psy16462 1028 LKMTMRCL 1035 (1522)
Q Consensus 1028 ~~~~~~~l 1035 (1522)
+..+++.+
T Consensus 232 ~~~i~~tl 239 (336)
T PLN02823 232 FSSIYNTL 239 (336)
T ss_pred HHHHHHHH
No 348
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=20.66 E-value=80 Score=37.35 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=34.1
Q ss_pred eEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 797 ~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
++|||=||.|.++.-|.+.| + .+.|+|+++.|.+..+.|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g-~-~V~avD~s~~ai~~~~~~~ 162 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLG-F-DVTAVDINQQSLENLQEIA 162 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCC-C-EEEEEECCHHHHHHHHHHH
Confidence 79999999999999988878 3 5789999999988766553
No 349
>KOG1270|consensus
Probab=20.64 E-value=94 Score=36.52 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=36.8
Q ss_pred CCceeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHh
Q psy16462 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 928 (1522)
Q Consensus 886 ~l~~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N 928 (1522)
..+++|+=||+|-||.=|.+.|. .|.++|..+.++++++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHh
Confidence 45799999999999999999995 678999999999998875
No 350
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=20.52 E-value=1.2e+02 Score=34.22 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=34.1
Q ss_pred CCceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcC
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNN 838 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~ 838 (1522)
+.-++||+.||.|.++.-+.+. |.-..++++|+++...+.-+.|.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 3468999999999999776543 32247999999998777666654
No 351
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=20.48 E-value=83 Score=29.39 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=32.1
Q ss_pred eeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCc
Q psy16462 890 LEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCT 933 (1522)
Q Consensus 890 iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~ 933 (1522)
||+=||.|-.+..+...+. .-++++|+++.+.+..+.+.....
T Consensus 1 LdiG~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~~~~~~~~~~ 43 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG-ASVTGIDISEEMLEQARKRLKNEG 43 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT-CEEEEEES-HHHHHHHHHHTTTST
T ss_pred CEecCcCCHHHHHHHhccC-CEEEEEeCCHHHHHHHHhcccccC
Confidence 5777788878888887733 578899999999999998876543
No 352
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=20.32 E-value=1.3e+02 Score=35.21 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=35.2
Q ss_pred CCCceEEeeecCCCccccccccc-CCeeEEEEEcCCHHHHHHHHhcCC
Q psy16462 793 ARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAAAAFKMNNP 839 (1522)
Q Consensus 793 ~~~~~~ldLFaG~GGls~Gl~~a-G~~~~~~ave~d~~A~~ty~~N~p 839 (1522)
.+..++|||=||.|+++.-+... | -.+.++|+++.+.+.-+.+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcC
Confidence 34568999999999998777543 4 268999999998887777664
No 353
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=20.14 E-value=63 Score=35.52 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred ccccCCCceeeeeeccCCCCcccccCC-CceEEEEEcccHHHHHHHHHhCCCCceeccchHH----------HHHHhhcc
Q psy16462 881 PSIARPLRCLEVFAGAGGLSRGLDKSG-VARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNK----------ILQRVIDN 949 (1522)
Q Consensus 881 ~~~~~~l~~iDLFsG~GGls~G~~~aG-~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~----------l~~~v~~g 949 (1522)
..+.+.-++||+-||.|+++.-+.... -...++++|+++.. ..++..++..|+.+ +
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~------- 94 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERV------- 94 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHh-------
Q ss_pred cccccccccCCCCCcccEEEeCCCC
Q psy16462 950 EVCDDKKQKLPRKGEVEMLCGGPPC 974 (1522)
Q Consensus 950 ~i~~~~~~~lp~~g~vDvL~GGPPC 974 (1522)
..+.+|+++..+++
T Consensus 95 -----------~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 95 -----------GDDKVDVVMSDAAP 108 (188)
T ss_pred -----------CCCCccEEEcCCCC
No 354
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=20.09 E-value=1e+02 Score=34.72 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=32.3
Q ss_pred CCceEEeeecCCCcccccccccCCeeEEEEEcCCHHHHHHH
Q psy16462 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAF 834 (1522)
Q Consensus 794 ~~~~~ldLFaG~GGls~Gl~~aG~~~~~~ave~d~~A~~ty 834 (1522)
++-++|||=||-|.=++=|.+.| + .|.|+|+++.|.+..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G-~-~VtAvD~s~~al~~l 68 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG-F-DVTAVDISPVALEKL 68 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC-C-eEEEEECCHHHHHHH
Confidence 46789999999999999999999 4 589999999998743
Done!