RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16462
(1522 letters)
>gnl|CDD|240062 cd04711, BAH_Dnmt1_II, BAH, or Bromo Adjacent Homology domain,
second copy present in DNA
(Cytosine-5)-methyltransferases from Bilateria, Dnmt1
and similar proteins. DNA methylation, or the covalent
addition of a methyl group to cytosine within the
context of the CpG dinucleotide, has profound effects on
the genome. These effects include transcriptional
repression via inhibition of transcription factor
binding, the recruitment of methyl-binding proteins and
their associated chromatin remodeling factors, X
chromosome inactivation, imprinting, and the suppression
of parasitic DNA sequences. DNA methylation is also
essential for proper embryonic development and is an
important player in both DNA repair and genome
stability. BAH domains are found in a variety of
proteins playing roles in transcriptional silencing and
the remodeling of chromatin. It is assumed that in most
or all of these instances the BAH domain mediates
protein-protein interactions.
Length = 137
Score = 173 bits (440), Expect = 4e-50
Identities = 72/136 (52%), Positives = 88/136 (64%), Gaps = 1/136 (0%)
Query: 623 DEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIF-KKKGKKNVSASDVFLTVKKFYRP 681
DE+LYPE YRK SDY+KGSN P PF IG I IF K+ + SD+ L + KFYRP
Sbjct: 1 DEDLYPEYYRKSSDYIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRP 60
Query: 682 ENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFY 741
ENTH+ + TY D+N LYWSDEE V S VQG+C V ++L S +S GP RFY
Sbjct: 61 ENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGEDLPESVQEYSGGGPDRFY 120
Query: 742 FNEAYNSKTEEFTNLP 757
F EAYN+KT+ F + P
Sbjct: 121 FLEAYNAKTKSFEDPP 136
>gnl|CDD|221394 pfam12047, DNMT1-RFD, Cytosine specific DNA methyltransferase
replication foci domain. This domain is part of a
cytosine specific DNA methyltransferase enzyme. It
functions non-catalytically to target the protein
towards replication foci. This allows the DNMT1 protein
to methylate the correct residues. This domain targets
DMAP1 and HDAC2 to the replication foci during the S
phase of mitosis. They are thought to have some
importance in conversion of critical histone lysine
moieties.
Length = 143
Score = 116 bits (292), Expect = 5e-30
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 56 IDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEG-GIPVK- 113
D+ P ++T F++YD +G LC +T ++KNV L SG +K I ++P+ EG G+ K
Sbjct: 1 EDERPQRKLTNFALYDSDGELCSLETLPIKKNVDLFISGVIKPIYDDEPSLEGKGVRDKG 60
Query: 114 ---EVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVI 170
+G I W I+G D GE I L+TDF+ L++PS+ Y P + V EK + V+
Sbjct: 61 LEIFLGRIKEWTISGGDDGE-PIIWLSTDFAWYKLLKPSKSYAPLYEPVFEKARVTVEVL 119
Query: 171 E-LCREDENA--TFEDLLNTLQT 190
+ L R + EDLL +
Sbjct: 120 KFLKRNPRVPDLSLEDLLARVLR 142
>gnl|CDD|240107 cd04760, BAH_Dnmt1_I, BAH, or Bromo Adjacent Homology domain, first
copy present in DNA (Cytosine-5)-methyltransferases from
Bilateria, Dnmt1 and similar proteins. DNA methylation,
or the covalent addition of a methyl group to cytosine
within the context of the CpG dinucleotide, has profound
effects on the genome. These effects include
transcriptional repression via inhibition of
transcription factor binding, the recruitment of
methyl-binding proteins and their associated chromatin
remodeling factors, X chromosome inactivation,
imprinting, and the suppression of parasitic DNA
sequences. DNA methylation is also essential for proper
embryonic development and is an important player in both
DNA repair and genome stability. BAH domains are found
in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 124
Score = 114 bits (288), Expect = 8e-30
Identities = 52/126 (41%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 410 GEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDP 469
GEE++ GD V V+ DDP P + +V YM++D K H WF RG +TVL E SDP
Sbjct: 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGK--MFHAHWFCRGSDTVLGETSDP 58
Query: 470 QELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYD 529
ELFL++ C+D++L+++ V + SENW+M+GG + + +D ++F+Y++ YD
Sbjct: 59 LELFLVDECEDMALSSIHGKVNVIYKAPSENWSMEGGMDEEDEIFE-DDGKTFFYQKWYD 117
Query: 530 PLHARF 535
P ARF
Sbjct: 118 PECARF 123
Score = 42.8 bits (101), Expect = 1e-04
Identities = 6/53 (11%), Positives = 12/53 (22%), Gaps = 10/53 (18%)
Query: 298 EGPRKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQD 350
+ K C+ D T + + C + A+
Sbjct: 32 DSIGGKMFHAHWFCRGSDTVLGE----------TSDPLELFLVDECEDMALSS 74
>gnl|CDD|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication,
recombination, and repair].
Length = 328
Score = 94.0 bits (234), Expect = 2e-20
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQR 945
++ +++FAG GGLS G +++G +A E D A +K N P I+
Sbjct: 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP--------HGDIILG 53
Query: 946 VIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDY 1005
I + RK +V++L GGPPCQ FS +R Y + SL + ++ +
Sbjct: 54 DIKELDGEAL-----RKSDVDVLIGGPPCQDFSIAG--KRRGYDDPRGSLFLEFIRLIEQ 106
Query: 1006 YRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1052
RP+FF+LENV+ ++ K + L ++GY F L A +
Sbjct: 107 LRPKFFVLENVKGLLSSKGQ-TFDEIKKELEELGYGVEFNILNAADY 152
Score = 79.0 bits (195), Expect = 2e-15
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 1341 GLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILE 1400
G Y RL + T G R +HP + R ++VRE AR QGFPD F G+ +
Sbjct: 245 GSYIRLHPDKPAPTVRG-----GGNERFIHPLEDRELTVREAARLQGFPDDFVFPGSKTD 299
Query: 1401 KHRQVGNAVPPPMGEALGREIKRALAEKE 1429
++RQ+GN+VPP + EA+ + I + L EK
Sbjct: 300 QYRQIGNSVPPLLAEAIAKAILKKLNEKN 328
Score = 57.1 bits (138), Expect = 3e-08
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1071 KNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGH 1130
+ SL + ++ + RP+FF+LENV+ ++ K + L ++GY F L A
Sbjct: 93 RGSLFLEFIRLIEQLRPKFFVLENVKGLLSSKGQ-TFDEIKKELEELGYGVEFNILNAAD 151
Query: 1131 FGVSQTRRRAIVLA 1144
+GV Q+R R ++
Sbjct: 152 YGVPQSRERVFIVG 165
Score = 39.3 bits (92), Expect = 0.011
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN 837
++ +++FAG GGLS G +++G +A E D A A +K N
Sbjct: 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKAN 44
>gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.
Length = 320
Score = 92.4 bits (230), Expect = 7e-20
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 40/200 (20%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
+ +++FAG GG GL+++G A E D +AA ++ N P +V
Sbjct: 1 FKFIDLFAGIGGFRLGLEQAGF-ECVAANEIDKSAAKTYEANFP--------------KV 45
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS---GMNRFNQRQYSAFKNSLIVSYLSYC 1003
++ + +P ++++L GG PCQ FS F + +L +
Sbjct: 46 PIGDITLIDIKDIP---DIDILTGGFPCQDFSIAGKQKGFEDTR-----GTLFFEIIRII 97
Query: 1004 DYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTP-----CY 1058
+P+ FLLENV+ ++ N L + + L ++GY ++ L A + P +
Sbjct: 98 KEKKPKAFLLENVKGLLSHDNGNTLNVILETLEELGYSVSWKVLNASDYG-VPQNRERVF 156
Query: 1059 CIGCCTRGSSAFKNSLIVSY 1078
+G +N LI+++
Sbjct: 157 IVG--------IRNDLILNF 168
Score = 78.9 bits (195), Expect = 2e-15
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 1356 ITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGE 1415
+GK G P+ R ++ RECAR QGFPD F G+ + ++Q+GNAVP P+ E
Sbjct: 253 APKTGILGKNGERFRPKNIRRLTPRECARLQGFPDDFIFPGSKTQLYKQIGNAVPVPVAE 312
Query: 1416 ALGREIKR 1423
A+ + IK+
Sbjct: 313 AIAKAIKK 320
Score = 57.3 bits (139), Expect = 2e-08
Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 37/216 (17%)
Query: 1071 KNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGH 1130
+ +L + +P+ FLLENV+ ++ N L + + L ++GY ++ L A
Sbjct: 86 RGTLFFEIIRIIKEKKPKAFLLENVKGLLSHDNGNTLNVILETLEELGYSVSWKVLNASD 145
Query: 1131 FGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYR 1190
+GV Q R R ++ + V +
Sbjct: 146 YGVPQNRERVFIVGI-----RNDLILNFPVPEFDFPKP-------------------STA 181
Query: 1191 TITVRDVMSDLPEIQNG-----CKMEELPYKENALSHFQ--------REMRKHVEKPTII 1237
T T+RD++ + +N +E ++ R VE+
Sbjct: 182 TDTIRDLLEEPSLDENKYNLSDKFVENHERRKPTTKAPGGGYPTYLLRNRIDKVEEGKGP 241
Query: 1238 SDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVR 1273
S K GE +++ + R
Sbjct: 242 SFTYRKSGRGEAPKTGILGKNGERFRPKNIRRLTPR 277
Score = 41.5 bits (98), Expect = 0.002
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP 839
+ +++FAG GG GL+++G A E D +AA ++ N P
Sbjct: 1 FKFIDLFAGIGGFRLGLEQAGF-ECVAANEIDKSAAKTYEANFP 43
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases;
Methyl transfer reactions play an important role in many
aspects of biology. Cytosine-specific DNA methylases are
found both in prokaryotes and eukaryotes. DNA
methylation, or the covalent addition of a methyl group
to cytosine within the context of the CpG dinucleotide,
has profound effects on the mammalian genome. These
effects include transcriptional repression via inhibition
of transcription factor binding or the recruitment of
methyl-binding proteins and their associated chromatin
remodeling factors, X chromosome inactivation, imprinting
and the suppression of parasitic DNA sequences. DNA
methylation is also essential for proper embryonic
development and is an important player in both DNA repair
and genome stability.
Length = 275
Score = 91.1 bits (227), Expect = 7e-20
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 36/199 (18%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG GL+K+G A E D +AA ++ N P + D KI
Sbjct: 1 LRVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNKLIE-GDITKI---- 54
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQRQYSAFKNSLIVSYLSYCD 1004
D+K +P ++++L GG PCQ FS G ++ + + +L +
Sbjct: 55 -------DEKDFIP---DIDLLTGGFPCQPFSIAG----KRKGFEDTRGTLFFEIIRILK 100
Query: 1005 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTP-----CYC 1059
+P++FLLENV+ + N LK+ + L ++GY + L A + P +
Sbjct: 101 EKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYG-VPQNRERVFI 159
Query: 1060 IGCCTRGSSAFKNSLIVSY 1078
IG + LI+++
Sbjct: 160 IG--------IRKDLILNF 170
Score = 65.7 bits (161), Expect = 2e-11
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1369 LHPEQHRVVSVRECARSQGFPDHHKFHG-TILEKHRQVGNAVPPPMGEALGREIKR 1423
R ++ RECAR QGFPD +F G ++ + +RQ+GN+VP P+ EA+ + IK
Sbjct: 220 GKESNIRRLTPRECARLQGFPDDFEFPGKSVTQAYRQIGNSVPVPVAEAIAKAIKE 275
Score = 59.6 bits (145), Expect = 3e-09
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 1071 KNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGH 1130
+ +L + +P++FLLENV+ + N LK+ + L ++GY + L A
Sbjct: 88 RGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASD 147
Query: 1131 FGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYR 1190
+GV Q R R ++ + P+ S+ T+ K + + +P
Sbjct: 148 YGVPQNRERVFIIGI-----RKDLILNFFSPFPKPSEKKKTL--KDILRIRDPDEPSP-- 198
Query: 1191 TIT 1193
T+T
Sbjct: 199 TLT 201
Score = 43.8 bits (104), Expect = 4e-04
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP 839
LR +++FAG GG GL+K+G A E D +AA ++ N P
Sbjct: 1 LRVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP 43
>gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain.
Length = 121
Score = 85.8 bits (213), Expect = 1e-19
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 636 DYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLD 695
D++ P+ IG I IF+ K + V+ FYRPE T D
Sbjct: 6 DFVLVEPDDADEPYYIGRIEEIFETKKNSE----SKMVRVRWFYRPEETVLEK--AALFD 59
Query: 696 LNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTN 755
N+++ SDE + V LSD+ GKC V+ + + S P F+ AY+ + F
Sbjct: 60 KNEVFLSDEYDTVPLSDIIGKCNVLYKSDYPGLRPEGSIGEPDVFFCESAYDPEKGSFKK 119
Query: 756 LP 757
LP
Sbjct: 120 LP 121
Score = 82.0 bits (203), Expect = 3e-18
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 412 EVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEE--LSDP 469
+ VGD+V+VE DD + P +G++ ++E KN +++ + WF R +ETVLE+ L D
Sbjct: 1 TISVGDFVLVEPDDADEPYYIGRIEEIFETKKNSESKMVRVRWFYRPEETVLEKAALFDK 60
Query: 470 QELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYD 529
E+FL + D V L+ + C V + P + F+ YD
Sbjct: 61 NEVFLSDEYDTVPLSDIIGKCNVLYKSDYPGL---------RPEGSIGEPDVFFCESAYD 111
Query: 530 PLHARFCDVP 539
P F +P
Sbjct: 112 PEKGSFKKLP 121
>gnl|CDD|202085 pfam02008, zf-CXXC, CXXC zinc finger domain. This domain contains
eight conserved cysteine residues that bind to two zinc
ions. The CXXC domain is found in a variety of
chromatin-associated proteins. This domain binds to
nonmethyl-CpG dinucleotides. The domain is characterized
by two CGXCXXC repeats. The RecQ helicase has a single
repeat that also binds to zinc, but this has not been
included in this family. The DNA binding interface has
been identified by NMR.
Length = 47
Score = 78.2 bits (193), Expect = 7e-18
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 301 RKKRCGVCEACQQP-DCGTCTACLDMVKFGGTGKAKQACIKRRC 343
+++RCGVCE CQ+P DCG C+ C DM KFGG GK KQ C RRC
Sbjct: 4 KRRRCGVCEGCQRPEDCGQCSFCRDMKKFGGPGKKKQKCRLRRC 47
>gnl|CDD|216495 pfam01426, BAH, BAH domain. This domain has been called BAH (Bromo
adjacent homology) domain and has also been called ELM1
and BAM (Bromo adjacent motif) domain. The function of
this domain is unknown but may be involved in
protein-protein interaction.
Length = 120
Score = 80.5 bits (199), Expect = 9e-18
Identities = 44/131 (33%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 411 EEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETV--LEELSD 468
E VGD+V+VE DD PP VG++ ++ED K H+ WF R +ETV L +
Sbjct: 1 ETYSVGDFVLVEPDDAGEPPYVGRIEEIFEDKDGSK--MVHVRWFYRPEETVHRLGRAFN 58
Query: 469 PQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTY 528
E+FL + CDDV L + C V S+ QP D F+ Y
Sbjct: 59 KDEVFLSDECDDVPLEDIIGKCNVIIK--SDPE-----SLQPRKINGEPDV--FFCELLY 109
Query: 529 DPLHARFCDVP 539
DP F +P
Sbjct: 110 DPERGSFKKLP 120
Score = 78.9 bits (195), Expect = 3e-17
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 636 DYMKGSNAYTPAPFGIGYIVAIFK-KKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQL 694
D++ P +G I IF+ K G K V V+ FYRPE T + +
Sbjct: 7 DFVLVEPDDAGEPPYVGRIEEIFEDKDGSKMVH-------VRWFYRPEETVHRLGRAFNK 59
Query: 695 DLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFT 754
D ++ SDE + V L D+ GKC V+ + + + R + P F+ Y+ + F
Sbjct: 60 DE--VFLSDECDDVPLEDIIGKCNVIIKSDPESLQPRKINGEPDVFFCELLYDPERGSFK 117
Query: 755 NLP 757
LP
Sbjct: 118 KLP 120
>gnl|CDD|233085 TIGR00675, dcm, DNA-methyltransferase (dcm). All proteins in this
family for which functions are known are DNA-cytosine
methyltransferases. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 315
Score = 75.8 bits (187), Expect = 2e-14
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 891 EVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNE 950
++FAG GG+ G +++G +A E D A ++ N V D KI
Sbjct: 3 DLFAGIGGIRLGFEQAGFK-CVFASEIDKYAQKTYEANFGN-KVPFGDITKI-------- 52
Query: 951 VCDDKKQKLPRKGEVEMLCGGPPCQGFS---GMNRFNQRQYSAFKNSLIVSYLSYCDYYR 1007
+P + ++L GG PCQ FS F + +L + +
Sbjct: 53 ----SPSDIP---DFDILLGGFPCQPFSIAGKRKGFEDTR-----GTLFFEIVRILKEKK 100
Query: 1008 PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1052
P+FFLLENV+ V+ K+ + L ++GY+ + L A F
Sbjct: 101 PKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDF 145
Score = 66.6 bits (163), Expect = 2e-11
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1334 NRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGR-VLHPEQHRVVSVRECARSQGFPDHH 1392
+ + L G+ + V+HP + R ++ RECAR QGFPD
Sbjct: 227 YNRESKSSIIRTLSARGYTFVKGGKSVLIVPHKSTVVHPGRIRRLTPRECARLQGFPDDF 286
Query: 1393 KFHGTILEKHRQVGNAVPPPMGEALGREI 1421
KF + + ++Q GNAV P+ EA+ ++I
Sbjct: 287 KFPVSDSQLYKQAGNAVVVPVIEAIAKQI 315
Score = 48.5 bits (116), Expect = 2e-05
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 1085 YRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 1144
+P+FFLLENV+ V+ K+ + L ++GY+ + L A FGV Q R R ++
Sbjct: 99 KKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVG 158
Query: 1145 AAPGEVLPKYPEPWTVFSPRT------SQLNVTISKKTYVSTCKW 1183
+ + P ++ + L+V + +K Y+S K
Sbjct: 159 FRDFDDKLNFEFPKPIYVAKKKRIGDLLDLSVDLEEKYYLSEEKK 203
Score = 36.9 bits (86), Expect = 0.060
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 800 EVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKI 851
++FAG GG+ G +++G +A E D A ++ N V D KI
Sbjct: 3 DLFAGIGGIRLGFEQAGFK-CVFASEIDKYAQKTYEANFGN-KVPFGDITKI 52
>gnl|CDD|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called
ELM1 and BAM for Bromo Adjacent Motif). BAH domains have
first been described as domains found in the polybromo
protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure
of Chromatin). They also occur in mammalian DNA
methyltransferases and the MTA1 subunits of histone
deacetylase complexes. A BAH domain is also found in
Yeast Sir3p and in the origin receptor complex protein 1
(Orc1p), where it was found to interact with the
N-terminal lobe of the silence information regulator 1
protein (Sir1p), confirming the initial hypothesis that
BAH plays a role in protein-protein interactions.
Length = 123
Score = 67.8 bits (166), Expect = 2e-13
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 410 GEEVKVGDYVMVESDD--PNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETV--LEE 465
G +VGD V VE DD ++PP + ++ ++ED +++ + WF R +ET L
Sbjct: 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNG--SKQVKVRWFYRPEETPKGLSP 58
Query: 466 LSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYR 525
+ +ELFL + D++ + ++ C+V E + ++ D F+ R
Sbjct: 59 FALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEGLKQRP---------NKIDTDDFFCR 109
Query: 526 QTYDP 530
YDP
Sbjct: 110 LAYDP 114
Score = 64.3 bits (157), Expect = 4e-12
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 8/127 (6%)
Query: 627 YPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHR 686
S Y++ ++ P I I +++ + V+ FYRPE T
Sbjct: 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN------GSKQVKVRWFYRPEETP- 53
Query: 687 SVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAY 746
+ +L+ SD +++ + + GKC V+ + R + F+ AY
Sbjct: 54 -KGLSPFALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAY 112
Query: 747 NSKTEEF 753
+ T+EF
Sbjct: 113 DPTTKEF 119
>gnl|CDD|240059 cd04708, BAH_plantDCM_II, BAH, or Bromo Adjacent Homology domain,
second copy present in DNA
(Cytosine-5)-methyltransferases (DCM) from plants. DNA
methylation, or the covalent addition of a methyl group
to cytosine within the context of the CpG dinucleotide,
has profound effects on the genome. These effects
include transcriptional repression via inhibition of
transcription factor binding, the recruitment of
methyl-binding proteins and their associated chromatin
remodeling factors, X chromosome inactivation,
imprinting, and the suppression of parasitic DNA
sequences. DNA methylation is also essential for proper
embryonic development and is an important player in both
DNA repair and genome stability. BAH domains are found
in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 202
Score = 66.3 bits (162), Expect = 4e-12
Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 51/237 (21%)
Query: 586 YEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYT 645
Y+G Y + +YV+PD F EE A K G N
Sbjct: 3 YDGVTYSVGDFLYVSPDAF------------------AEEERERATFK-----AGRNVGL 39
Query: 646 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEE 705
A F + ++ I +K K + + V++FYRPE+ S E Y D+ ++Y+S++
Sbjct: 40 KA-FVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDV--SPEKAYASDIREVYYSEDT 96
Query: 706 EQVSLSDVQGKCFVVCEDNLQISTDRWSSRGP----HRFYFNEAYNSKTEEFTNLPT--E 759
V + V+GKC V +D S P H F+ Y+ LP +
Sbjct: 97 LTVPVEAVEGKCEVR------KKSDLPDSDAPVIFEHVFFCELLYDPAKGSLKQLPPNIK 150
Query: 760 ALFLGSVS--------KGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGL 808
+ + KGKGKG ++++ E L L++FAG GGL
Sbjct: 151 EEAYSTGASDSALRKRKGKGKGDSESDSEAPVKAPKE-----NRLATLDIFAGCGGL 202
>gnl|CDD|240063 cd04712, BAH_DCM_I, BAH, or Bromo Adjacent Homology domain, as
present in DNA (Cytosine-5)-methyltransferases (DCM) 1.
DNA methylation, or the covalent addition of a methyl
group to cytosine within the context of the CpG
dinucleotide, has profound effects on the genome. These
effects include transcriptional repression via
inhibition of transcription factor binding, the
recruitment of methyl-binding proteins and their
associated chromatin remodeling factors, X chromosome
inactivation, imprinting, and the suppression of
parasitic DNA sequences. DNA methylation is also
essential for proper embryonic development and is an
important player in both DNA repair and genome
stability. BAH domains are found in a variety of
proteins playing roles in transcriptional silencing and
the remodeling of chromatin. It is assumed that in most
or all of these instances the BAH domain mediates
protein-protein interactions.
Length = 130
Score = 61.3 bits (149), Expect = 5e-11
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)
Query: 408 IGGEEVKVGDYVMVESDDPNNP----------PPVGKVCYMYEDMKNFKTRKCHILWFAR 457
I G ++VGD V VE DD ++ P V V YM + + ++ H W R
Sbjct: 1 IHGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKK--GSDGSKMFHGRWLYR 58
Query: 458 GQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDRE 517
G +TVL ++ +ELFL C + L+ ++ + H +W+ +
Sbjct: 59 GCDTVLGNYANERELFLTNECTCLELDLLSTEIKGVH---KVDWSGTP---------WGK 106
Query: 518 DERSFYYRQTYD 529
F+ RQ+Y
Sbjct: 107 GLPEFFVRQSYY 118
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 53.2 bits (127), Expect = 1e-06
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E K+ E +K E KKKA+E K+ EE +K E + EE + DE + EE + DE
Sbjct: 1494 EAKKKADEAKKAAEAKKKADE--AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
K+ ++ KK E + K E+ K+ + + A ++ +E A+E +
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Score = 52.8 bits (126), Expect = 2e-06
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPI---QEDEKEGNEEVMRE 1476
E + E +KK EE KKAEE+ K E +K EE +K E + + +EK+ EE+ +
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA 1724
Query: 1477 DE----------NKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+E + +D+KK E E K+++ ++ K + ++E
Sbjct: 1725 EEENKIKAEEAKKEAEEDKKKAE-EAKKDEEEKKKIAHLKKEEE 1767
Score = 51.3 bits (122), Expect = 5e-06
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPI------QEDEKE 1468
EA E + AE+ KK EE+KK E+ K+ EE+K EE +K E +E +K
Sbjct: 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
Query: 1469 GNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
++ E+ K +D KK K+E +E K +E +E +E A+E K
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEA-EEAKKAEELKKKEAEEKKKAEELK 1722
Score = 50.9 bits (121), Expect = 6e-06
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ---EDEKEGNEEVMRE 1476
E+K+A A K+K E KKKAEE K+ +E +K EE +K + + E+ K+ E +
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEE--KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+E K+ D+ KK E K+ D + K+ E A ++ DE A E K
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEE--AKKKADEAKKAAEAK 1509
Score = 50.9 bits (121), Expect = 6e-06
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 14/115 (12%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEES-VKQTEEEQKGKEETEKEEPI---QEDEKEGNEEVMR 1475
++K+ AE++KK EE KKAEEE+ +K EE +K +E+ +K E +EDEK+ E + +
Sbjct: 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
Query: 1476 EDE---------NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
E E KE +++KK E K E+ + K+ E + E ++ A+E K
Sbjct: 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE-EDKKKAEEAK 1750
Score = 50.5 bits (120), Expect = 9e-06
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E K+ E +K E KKKAEE K ++K +E + E + + + +E +E
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQ 1509
E ++KK E + K + K+ + AD+
Sbjct: 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
Score = 50.5 bits (120), Expect = 9e-06
Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEE-EQKGKEETEKEEPIQEDEKEGN--EEVMRE 1476
E+K+ AE++KK EE KKAEEE+ + EE +++ +E+ +K E ++DE+E + +E
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+E K + RK+ E +EE +E++ D++I ++
Sbjct: 1766 EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
Score = 50.5 bits (120), Expect = 9e-06
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK--EEPIQEDEKEGNEE 1472
EA E K+ E +KK EE KKA+E K+ EE +K + +K EE + E E
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAK-KKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
DE + +++ + + KEE K+ +++ A +E ADE K
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA----EEKKKADEAK 1397
Score = 49.8 bits (118), Expect = 1e-05
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EA + A++ KK EE KKA+E K+ EE +K E + EE + DE + EE+
Sbjct: 1501 EAKKAAEAKKKADEAKKAEEAKKADE--AKKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ +E K+ ++ KK E EDK ++ + ++ + + I+EVM E
Sbjct: 1559 KAEEKKKAEEAKKAE-EDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
Score = 49.8 bits (118), Expect = 1e-05
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E + E +KK EE KKA+E K+ EE +K +E +K + K+ +E + +E
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAK-KKAEEAKKKADEAKK----AAEAKKKADEAKKAEEA 1521
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEI---DEVMTADETK 1521
K+ D+ KK E K ++ K K+ E E+ +E+ A+E K
Sbjct: 1522 KKADEAKKAEEAKKADEAK--KAEEKKKADELKKAEELKKAEEKK 1564
Score = 49.8 bits (118), Expect = 1e-05
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 1420 EIKRALAEKEKKVEEKKKAEE-----ESVKQTEEEQKGKEETEKEEPI----QEDEKEGN 1470
E + E +KK EE KKAEE E K+ +E +K EE +K + +E +K+ +
Sbjct: 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1500
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSAD-QEIDEVMTADETK 1521
E + K+ D+ KK E K ++ K+ + ++ + + ++ +E ADE K
Sbjct: 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Score = 49.4 bits (117), Expect = 2e-05
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E K+ E +KK +E KKA E K+ +E +K +E + +E + +E + +E + +E
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAK-KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
K+ D+ KK E K E+ K+ + ++ + + + + A+E K
Sbjct: 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
Score = 49.4 bits (117), Expect = 2e-05
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E + E +KK EE KK +E+ K E ++K E + EE + DE + EE + DE
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
Query: 1480 KENDDRKKGEIEDKEED---GKENKSSETSADQEIDEVM 1515
K+ +++KK + K E+ +E K +E + E D+ M
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNM 1578
Score = 48.2 bits (114), Expect = 4e-05
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 1422 KRALAEKEKKVEEKKKAEE-----ESVKQTEEEQKGKEETEK---EEPIQEDEKEGNEEV 1473
++A A ++KK E KKKA+ E K+ +E +K EE +K E K+ +E
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423
Query: 1474 MREDENKENDD--RKKGEIEDKEEDGK---ENKSSETSADQEIDEVMTADETK 1521
++ E K+ D +KK E K ++ K E A ++ +E ADE K
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
Score = 48.2 bits (114), Expect = 4e-05
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
L E K+ AE+ KK EE K EE +K+ EEE+K E+ +K+E +EK+ EE+ +
Sbjct: 1600 LYEEEKKMKAEEAKKAEEAKIKAEE-LKKAEEEKKKVEQLKKKE---AEEKKKAEELKKA 1655
Query: 1477 DEN----------KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+E K +D+KK E K E+ + K + + +E +E A+E K
Sbjct: 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEE--DEKKAAEALKKEAEEAKKAEELK 1708
Score = 48.2 bits (114), Expect = 4e-05
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E+K+A E + K EE KK EE K+ EE +K +EE +K ++++E++ EE+ +E E
Sbjct: 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
Query: 1480 ------KENDDRKKGEIEDKEEDGKEN 1500
E D++++ E++ K +D +N
Sbjct: 1780 VIEEELDEEDEKRRMEVDKKIKDIFDN 1806
Score = 47.8 bits (113), Expect = 5e-05
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE----TEKEEPIQEDEKEGN 1470
EAL +E AE+ KK EE KK E E K+ EE +K +EE E+ + E++K+
Sbjct: 1692 EALKKE-----AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
EE +++E K+ K E E K E+ ++ K E ++E+DE
Sbjct: 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK--EAVIEEELDE 1787
Score = 47.4 bits (112), Expect = 6e-05
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 1426 AEKEKKVEEKKKAEE----ESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
A++ KK EEKKKA+E E K+ +E +K EE +K + ++ +E ++ + K+
Sbjct: 1280 ADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKA--DAAKKK 1337
Query: 1482 NDDRKK-GEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
++ KK E E + +++ E E + K
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 47.4 bits (112), Expect = 6e-05
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
A++ KK EE KKA+E K+ EE++K E + EE + +EK+ EE + +E+K R
Sbjct: 1524 ADEAKKAEEAKKADE--AKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
Query: 1486 KKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
K E + E E + E E ++ M A+E K
Sbjct: 1582 KAEEAKKAE----EARIEEVMKLYEEEKKMKAEEAK 1613
Score = 47.1 bits (111), Expect = 9e-05
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 1426 AEKEKKVEEKKKAEE---------ESVKQTEE----EQKGKEETEKEEPIQEDEKEGNEE 1472
AE++KK EE KKAEE E K+ EE E E EK+ +E +K +
Sbjct: 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ E+ K +++KK E K+E ++ K+ E +E +++ A+E K
Sbjct: 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
Score = 46.7 bits (110), Expect = 1e-04
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKE----ETEKEEPIQEDEKEGNEEVMR 1475
K+ E +K E K E + + E ++ E + E+ + + K+ EE +
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Query: 1476 EDENK---ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
DE K E D +K E++ K K+ E A ++ +E ADE K
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKK--KADE--AKKKAEEKKKADEAK 1437
Score = 46.3 bits (109), Expect = 1e-04
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E K+A K+K E+KKKA+E +K+ +K +E +K+ E++K+ +E + +E
Sbjct: 1389 EKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKK---AEEKKKADEAKKKAEEA 1443
Query: 1480 KENDD-RKKGEIEDKEEDGK---ENKSSETSADQEIDEVMTADETK 1521
K+ D+ +KK E K E+ K E A ++ +E ADE K
Sbjct: 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
Score = 45.9 bits (108), Expect = 2e-04
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 26/120 (21%)
Query: 1426 AEKEKKVEEKKKAEE----ESVKQTEE----EQKGKEETEKE------EPIQEDEKEGNE 1471
A++ KK EEKKKA+E E +K+ EE E+ K E +K E ++ E+ E
Sbjct: 1536 ADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
Query: 1472 EVMR----------EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
EVM+ E+ K + + K E K E+ E K E +E +E A+E K
Sbjct: 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE--EKKKVEQLKKKEAEEKKKAEELK 1653
Score = 45.1 bits (106), Expect = 3e-04
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK--EEPIQEDE-KEGNEEVMRE 1476
E K+ E +KK EE KKA+E K+ EE K EE +K EE + DE K+ EE +
Sbjct: 1428 EEKKKADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA 1485
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
DE K+ + K + ++ ++ + K ++ + E E ADE K
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE--EAKKADEAK 1528
Score = 44.0 bits (103), Expect = 7e-04
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
AE KK E KKAEE K EE +K +EE EE + +E R+ K + R
Sbjct: 1220 AEDAKKAEAVKKAEEAK-KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
Query: 1486 KKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
K E++ EE K +++ + ++ DE E
Sbjct: 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
Score = 44.0 bits (103), Expect = 8e-04
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 9/104 (8%)
Query: 1426 AEKEKKVEEKKKAEE----ESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
AE+ KK +E KKAEE + +K+ EE +K EE +K E ++ E++ N + + +E K+
Sbjct: 1530 AEEAKKADEAKKAEEKKKADELKKAEELKKA-EEKKKAEEAKKAEEDKNMALRKAEEAKK 1588
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQE----IDEVMTADETK 1521
++ + E+ E+ K+ K+ E +E +E+ A+E K
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
Score = 42.8 bits (100), Expect = 0.002
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR--ED 1477
E +A AE E + + E+ ++ +EE K K + K+ + +EK+ +E + E+
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK---KAEEKKKADEAKKKAEE 1402
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEI----DEVMTADETK 1521
+ K+ D+ KK K+ D + K+ E E +E ADE K
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
Score = 41.3 bits (96), Expect = 0.005
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEE----ESVKQTEEEQKGKEETEKEEPIQ-EDEKEG 1469
EA + + AE+ +K E+ +KAE E ++ EE +K ++ + E + E+ K+
Sbjct: 1179 EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKD 1238
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
EE + +E + N++ +K E + + + ++ DE+ A+E K
Sbjct: 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK 1290
Score = 40.5 bits (94), Expect = 0.008
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 1427 EKEKKVEEKKKAEEESVKQT---EEEQKGKEETEKEEPIQE-DEKEGNEEVMREDENKEN 1482
E E KAEE +T EE +K +E +K E ++ +E E+ + +E ++
Sbjct: 1089 ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA 1148
Query: 1483 DDRKKGEIEDKEEDGKENKSSETSAD-QEIDEVMTADETK 1521
+D K+ EI K ED ++ + + + D ++ + A+E +
Sbjct: 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR 1188
Score = 38.6 bits (89), Expect = 0.039
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 1426 AEKEKKVEEKKKAEE----ESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR-EDENK 1480
AE +K EE +KAEE E ++ E +K +EE + EE + ++ + E V + E+ K
Sbjct: 1178 AEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ ++ KK E E E+ ++ + + + + A+E +
Sbjct: 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
Score = 37.0 bits (85), Expect = 0.10
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EA E + AE +K EE +KAE+ ++ EE +K ++ E + ++ EE
Sbjct: 1113 EARKAEEAKKKAEDARKAEEARKAED--ARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
Query: 1475 R-EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ ED K RK E+ EE K + + A ++ +E A+E +
Sbjct: 1171 KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR 1218
Score = 36.7 bits (84), Expect = 0.12
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEE----------ESVKQTEEEQKGKEETEKEEPIQE 1464
EA + AE+ +K E+ +KAEE E ++ E+ +K +E + E+ +
Sbjct: 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178
Query: 1465 DEKEGNEEVMREDE-NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ EEV + +E K D RK EE+ K ++ + ++ + V A+E K
Sbjct: 1179 EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK 1236
Score = 35.5 bits (81), Expect = 0.30
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKG--KEETEKEEPIQE-DEKEGNEEVMREDENKEN 1482
AE+E+ EE +K EE + Q EE K + +++ +EK+ +E + +E K+
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA 1304
Query: 1483 DDRKKGEIEDKEED-----GKENKSSETSADQEIDEVMTADETK 1521
D+ KK E K+ D +E K +A ++ +E A E
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
Score = 35.5 bits (81), Expect = 0.31
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 1427 EKEKKVEEKKKAEE----------ESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
E +K E+ +KAEE E+ ++ EE +K +E + E+ + + EE +
Sbjct: 1155 EIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+E ++ +D KK E K E+ K++ A++E
Sbjct: 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEE 1248
Score = 35.1 bits (80), Expect = 0.36
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
KE ++ A EE+ + EE +K + +E E+ K+ E+ + +E ++ +D +
Sbjct: 1083 AKEDNRADE--ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR 1140
Query: 1487 KGEIEDKEEDGKENKSSETSAD-QEIDEVMTADETK 1521
K E K ED K + + + D ++ +E A++ K
Sbjct: 1141 KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK 1176
Score = 32.8 bits (74), Expect = 2.2
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR--EDENKEND 1483
+ K+ + K+ + + TEE EE +K E + +E EE + ED K +
Sbjct: 1075 SYKDFDFDAKEDNRAD--EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE 1132
Query: 1484 DRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
RK + EE K + ++ ++ A+E +
Sbjct: 1133 ARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
>gnl|CDD|240070 cd04719, BAH_Orc1p_animal, BAH, or Bromo Adjacent Homology domain,
as present in animal homologs of Saccharomyces
cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin
recognition complex. The Orc1p BAH doman functions in
epigenetic silencing. In vertebrates, a similar ORC
protein complex exists, which has been shown essential
for DNA replication in Xenopus laevis. BAH domains are
found in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 128
Score = 47.4 bits (113), Expect = 4e-06
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 413 VKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCH--ILWFARGQE---TVLEELS 467
++VGD+V++E +D + P V ++ ++YED N + WF+R E + L
Sbjct: 4 IEVGDFVLIEGEDADG-PDVARILHLYED-GNEDDDPKRAIVQWFSRPSEVPKNKRKLLG 61
Query: 468 ---DPQELFLLE--ACD-DVSLNAVANLCQVKHFPISEN 500
QE+F +CD D+ + +V+ +
Sbjct: 62 REPHSQEVFFYSRSSCDNDIDAETIIGKVRVEPVEPKTD 100
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 46.6 bits (111), Expect = 2e-05
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
E +KK +E + E+ K+ EE+QK K + +K + ++ +K+ ++ + ++K
Sbjct: 58 TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDD---KKDDKSEKKD 114
Query: 1486 KKGEIEDKEEDGKENKSSETSADQ 1509
+K E +++ KS +
Sbjct: 115 EK---EAEDKLEDLTKSYSETLST 135
Score = 32.0 bits (73), Expect = 1.3
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
E + + K+KK ++K K +++ E++ KE +K E + + E +
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDK-KDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 48.6 bits (116), Expect = 2e-05
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
G + + L E KK+++ K E +T+ ++ + + ++E+ QE+ ++ +E ED
Sbjct: 364 GDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADED 423
Query: 1478 ENKENDDRKKG 1488
+ K D +K
Sbjct: 424 KEKRQKDERKK 434
Score = 44.8 bits (106), Expect = 3e-04
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ---EDEKEGNEEVMREDENKENDDR 1485
+K+ E K+ ++ T++ + K+ET+ E + ++EK EE E + KE D
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEE--NEKKQKEQADE 422
Query: 1486 KKGEIEDKEEDGK 1498
K E K+E K
Sbjct: 423 DK-EKRQKDERKK 434
Score = 35.2 bits (81), Expect = 0.28
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
+ E + + K EEK K EE KQ E+ + KE+ +K+E
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Score = 30.5 bits (69), Expect = 8.2
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 1448 EEQKGKEETEKEEPIQEDEKEGNEEVMREDEN-----KENDDRKKGEIEDKEEDGK--EN 1500
EE K + ++ QE KE N+++ + E D ++ E + KEE K EN
Sbjct: 354 EEVKSNTDLSGDK-RQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEEN 412
Query: 1501 KSSETSADQEIDEVMTADETKD 1522
+ + E E DE K
Sbjct: 413 EKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This protein,
which interacts with both microtubules and TRAF3 (tumour
necrosis factor receptor-associated factor 3), is
conserved from worms to humans. The N-terminal region is
the microtubule binding domain and is well-conserved; the
C-terminal 100 residues, also well-conserved, constitute
the coiled-coil region which binds to TRAF3. The central
region of the protein is rich in lysine and glutamic acid
and carries KKE motifs which may also be necessary for
tubulin-binding, but this region is the least
well-conserved.
Length = 506
Score = 48.7 bits (116), Expect = 2e-05
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 1418 GREIKRALAEKEKKVEEK--KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
G A K K + K EE+ +Q +EE+K K+E KEEP KE +E
Sbjct: 83 GGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Query: 1476 EDENKENDDRKKGEIEDKEEDGKENKSSETSA 1507
E ++ ++K E D+EE+ K + S
Sbjct: 143 PKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Score = 44.9 bits (106), Expect = 3e-04
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E K+ EK K+ + +K +EE+ ++ ++K KE+ +K E ++ E+E E +R
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ KK K+E +E K + + +
Sbjct: 175 PKK-PPKKKPPNKKKEPPEEEKQRQAAREAV 204
Score = 43.0 bits (101), Expect = 0.001
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ-EDEKEGNEEVMREDENK 1480
K + E++KK +EK K E + K EE ++ + EKE+ + + E+ + E ++ E
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
R K + K + K+ E Q
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQA 199
Score = 42.6 bits (100), Expect = 0.002
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
K EKE+ EEKKK +E+ K+ +++K KEE +E EKE +E E+
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKP-KEEPKDRKPKEE--AKEKRPPKEKEKEKEKKVEE 156
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+++K+ + K K K + +E E
Sbjct: 157 PRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPE 192
Score = 39.1 bits (91), Expect = 0.017
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 1426 AEKEKKV-EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE---GNEEVMREDENKE 1481
EKEK+ +E+KK ++E K+ +++K KEE +++ P +E EKE EE +E K+
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + K K + ++E
Sbjct: 166 RERVRAKSRPKKPPKKKPPNKKKEPPEEE 194
Score = 38.3 bits (89), Expect = 0.030
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE-TEKEEPIQEDEKEGNEEVMRED 1477
++ K K++K +E+ K + ++ +E++K EE ++EE + + R
Sbjct: 120 KKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKS---RPK 176
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + K + +EE ++ E
Sbjct: 177 KPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPE 209
Score = 37.9 bits (88), Expect = 0.037
Identities = 19/92 (20%), Positives = 43/92 (46%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+ KR EKEK+ E+K + + ++ + E+ + K+ P ++ + E E +
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQ 196
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + KG+ E+ + + + K + D+E
Sbjct: 197 RQAAREAVKGKPEEPDVNEEREKEEDDGKDRE 228
Score = 37.9 bits (88), Expect = 0.037
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 1400 EKHRQVGNAVPPPMGEALGREIKR-ALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK 1458
EK ++ V P E KR + K + + KK K+ EE+K ++ +
Sbjct: 145 EKEKEKEKKVEEPRDRE--EEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAARE 202
Query: 1459 EEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTAD 1518
+ +E + NEE +E+++ ++ + +E+ E S +S+ + + +
Sbjct: 203 AVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSM 262
Query: 1519 E 1519
Sbjct: 263 A 263
Score = 37.2 bits (86), Expect = 0.064
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 1416 ALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKE-ETEKEEPIQEDEKEGNEEVM 1474
A + ++ +K K A + + + + GKE E EKE+ +E +K+ +
Sbjct: 67 AESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKE 126
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ K ++ K+ ++E KE K E D+E
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKE-KKVEEPRDRE 161
Score = 35.2 bits (81), Expect = 0.25
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
++K +EK+K EE + EE+K +E + ++ K+ +E +E +
Sbjct: 141 RPPKEKEKEKEKKVEEP--RDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQ 198
Query: 1486 KKGEIED-KEEDGKENKSSETSADQEID 1512
E K E+ N+ E D D
Sbjct: 199 AAREAVKGKPEEPDVNEEREKEEDDGKD 226
Score = 33.7 bits (77), Expect = 0.81
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 1431 KVEEKKKAEEESVKQTEE-EQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGE 1489
K E K + +E+VK+ E+ KG K + + G EE +++ KE ++KK +
Sbjct: 65 KCAESKLSSDEAVKRVEKGGSKGPAAKTKPAK-EPKNESGKEEEKEKEQVKE--EKKKKK 121
Query: 1490 IEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ KEE E + E E K
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Score = 32.6 bits (74), Expect = 2.0
Identities = 20/124 (16%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 1400 EKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE 1459
+ + A + +E ++ + E + EEKK+ + + ++ K K +K+
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKK 188
Query: 1460 EPIQEDEKEG--NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
EP +E+++ E V + E + + ++ + ED +D + S + ++
Sbjct: 189 EPPEEEKQRQAAREAVKGKPEE-PDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISR 247
Query: 1518 DETK 1521
+
Sbjct: 248 RSSS 251
>gnl|CDD|240065 cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homology domain, as
present in mammalian BAHCC1 and similar proteins. BAHCC1
stands for BAH domain and coiled-coil containing 1. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 121
Score = 43.5 bits (103), Expect = 7e-05
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 410 GEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVL-EELSD 468
E ++VGD V+ +S + P V ++ ++ED + + W+ R +ET + +
Sbjct: 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNM--VVRVKWYYRPEETKGGRKPNH 58
Query: 469 -PQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQ- 526
+ELF + D+ S+ + + C V F +E + +P VD FYY
Sbjct: 59 GEKELFASDHQDENSVQTIEHKCYVLTF--AEYERLARVKKKPQDGVD------FYYCAG 110
Query: 527 TYDP 530
TY+P
Sbjct: 111 TYNP 114
Score = 30.4 bits (69), Expect = 2.3
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 651 IGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTH--RSVEFTYQLDL-NKLYWSDEEEQ 707
+ I ++++ ++ + VK +YRPE T R +L+ SD +++
Sbjct: 23 VARIESLWEDPE------GNMVVRVKWYYRPEETKGGRK-----PNHGEKELFASDHQDE 71
Query: 708 VSLSDVQGKCFVV 720
S+ ++ KC+V+
Sbjct: 72 NSVQTIEHKCYVL 84
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family. Prothymosin
alpha and parathymosin are two ubiquitous small acidic
nuclear proteins that are thought to be involved in cell
cycle progression, proliferation, and cell
differentiation.
Length = 106
Score = 43.0 bits (101), Expect = 9e-05
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
L EK++ VEEK+ + E E+ G +E + E +E+ E +EE E E +E ++
Sbjct: 16 LKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEE 75
Query: 1485 RKKGE------IEDKEEDGKENKSSETSAD 1508
++ E + EED E K +T D
Sbjct: 76 EEETEGATGKRAAEDEEDDAETKKQKTDED 105
Score = 39.9 bits (93), Expect = 9e-04
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGE 1489
K ++EKK+ EE G E E +DE E EEV +DE +E + ++
Sbjct: 14 KDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEG 73
Query: 1490 IEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
E++E +G K +A+ E D+ T + D
Sbjct: 74 EEEEETEGATGKR---AAEDEEDDAETKKQKTD 103
Score = 34.6 bits (79), Expect = 0.072
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKA-EEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
+E K + EKE E E E + + +EE E +E +E+E EG EE E+
Sbjct: 17 KEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEE 76
Query: 1478 ENKENDDRKKG-EIEDKEEDGKENKSSETS 1506
E E K+ E E+ + + K+ K+ E
Sbjct: 77 EETEGATGKRAAEDEEDDAETKKQKTDEDD 106
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S rRNAs,
demonstrating that 5'-end processing also has a redundant
pathway. Nop25 binds late pre-60S ribosomes, accompanying
them from the nucleolus to the nuclear periphery; and
there is evidence for both physical and functional links
between late 60S subunit processing and export.
Length = 134
Score = 42.7 bits (101), Expect = 2e-04
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE-EPIQEDEKEGNEEVMRED-EN 1479
KR ++K EE K+ E E ++ EE ++ +EE ++E E ++ KE + + E+ +
Sbjct: 29 KRKQQRRKKAQEEAKEKERE--ERIEERKRIREERKQELEKQLKERKEALKLLEEENDDE 86
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
++ + ++ED E +G + ++ IDE
Sbjct: 87 EDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDE 120
Score = 34.6 bits (80), Expect = 0.11
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 1415 EALGREIKRALAEKEKKV-EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
E + + E+ K++ EE+K+ E+ +K+ +E K EE +E ++ E E E+V
Sbjct: 40 EEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDE--EDAETEDTEDV 97
Query: 1474 MREDENK-ENDDRKKGEIEDKEEDG 1497
++ E E +ED
Sbjct: 98 EDDEWEGFPEPTVTDYEEEYIDEDK 122
Score = 31.5 bits (72), Expect = 1.4
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
E EK+++E+K+A + ++ ++E+ + E ++ E E V +E ++D+
Sbjct: 63 QELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDK 122
Query: 1486 KKGEIEDKEED 1496
K + +E D
Sbjct: 123 YKTTVTVEELD 133
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 45.8 bits (108), Expect = 2e-04
Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 1403 RQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTE--------------- 1447
R P E E AE+E + E K + E E E
Sbjct: 644 RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Query: 1448 EEQKGKEETEKEEPIQEDEKEGNE---EVMREDENKENDDRKKGEIEDKEEDGKENKSSE 1504
+ KG+ E E+ E E E EG E E+ +E +E +D +GE E K E E E
Sbjct: 704 ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKE 763
Query: 1505 TSADQEIDEVMTADE 1519
T + E + DE
Sbjct: 764 TEHEGETEAEGKEDE 778
Score = 43.4 bits (102), Expect = 0.001
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE--GNEEVMRED 1477
E K A + E + EE + E + TE+E + + E EE E E E G EV E
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ KE + + E E KE++ + + + + DE
Sbjct: 760 DRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
Score = 41.1 bits (96), Expect = 0.005
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
P ALG K +AE E E+ E E + E E + E E+ + + K
Sbjct: 620 PVAKVMALGDLSKGDVAEAEHT-GERTGEEGERPTEAEGENGEESGGEAEQEGETETKGE 678
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGK-ENKSSETSADQEIDEVMTADE 1519
NE ++ + +GEIE KE D K E ++ E + E + T DE
Sbjct: 679 NESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDE 729
Score = 38.1 bits (88), Expect = 0.045
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEE-QKGKEETEKEEPIQEDE---KEG 1469
GE G E E E + E +K E E +T+ + + K+ET ++E E++ K+
Sbjct: 789 GEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD 848
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTAD 1518
+ V + D ++ E E++EE+ +E + E ++E +E ++ +
Sbjct: 849 EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
Score = 35.4 bits (81), Expect = 0.32
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE---KEEPIQEDEKEGN 1470
GEA G+ ++++ E + E + E E + E+ E E + E EG
Sbjct: 747 GEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGE 806
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E +DE++ + + + E K+E G++ ++E + + DE
Sbjct: 807 TEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDE 849
Score = 35.4 bits (81), Expect = 0.33
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 1412 PMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTE-EEQKGKEETEKEEPIQEDEKEGN 1470
G EI+ +E + E + +AE + +TE + ++ + E E E +EDE EG
Sbjct: 723 AEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE 782
Query: 1471 EEVMREDENKEND-DRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ + E K ++ K E E + E G++++ S Q D + +
Sbjct: 783 IQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDET 832
Score = 34.6 bits (79), Expect = 0.60
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 1414 GEALGREIKRALAEKEKKVE-EKKKAEEESVKQTEE--EQKGKEETEKEEPIQEDEKEGN 1470
+ E R E E + E E K+ E+E Q E E KG E E + + + + G
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGE 811
Query: 1471 EEVMREDENKENDDR----KKGEIEDKEEDGKENKSSETSADQE 1510
++ + DD + GE E E+ E K E D
Sbjct: 812 KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGG 855
Score = 33.4 bits (76), Expect = 1.1
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
EE+++ EEE ++ EEE++ +EE E EEP+ + E
Sbjct: 865 EEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPE 900
Score = 33.4 bits (76), Expect = 1.3
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE--EPIQEDEKEGNEEVMREDENKENDD 1484
+ + E K E + E E + E+ E E Q D+ E +E ++ N EN
Sbjct: 784 QAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQG 843
Query: 1485 RKK--------------GEIEDKEEDGKENKSSETSADQEIDE 1513
K G+ E++EE+ +E + E ++E +E
Sbjct: 844 EAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEE 886
Score = 31.5 bits (71), Expect = 4.5
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKA--EEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+A E+K E+E E + +A +E+ V G E E+EE E+E+E EE
Sbjct: 822 QADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEE---EEEEEEEEE 878
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKE 1499
E+E +E ++ + +E E K+
Sbjct: 879 EEEEEEEEEEENEEPLSLEWPETRQKQ 905
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 45.2 bits (107), Expect = 2e-04
Identities = 19/107 (17%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 1416 ALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
LG E K + +KK ++ KK E + ++E++ + E E + E ++ +++
Sbjct: 139 ILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSE--ESAEDDSDDEEE 196
Query: 1476 EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
ED + E+ + G + D ++ + ++ + +++ E + + +
Sbjct: 197 EDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSE 243
Score = 40.2 bits (94), Expect = 0.008
Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 1396 GTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE 1455
+I+E ++ ++ K++ K+K+ +E ++E ++E+E K +E
Sbjct: 130 ESIMEGLDKILGIETKAKKGKAKKKTKKS---KKKEAKESSDKDDEEESESEDESKSEES 186
Query: 1456 TEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
E + +E+E +E+ + D D + E E+ +SE+ +D+ E+
Sbjct: 187 AEDDSDDEEEEDSDSEDYSQYD-GMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEI 244
Score = 35.2 bits (81), Expect = 0.29
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
+ K+ E K +E++ E+ K E + ++ E+E+ + E + M D
Sbjct: 156 KKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED--SDSEDYSQYDGMLVD 213
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ E + + I E+ E++S E+ ++
Sbjct: 214 SSDEEEGEEAPSINYNEDTS-ESESDESDSEISESR 248
Score = 34.4 bits (79), Expect = 0.52
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
+ + L + K + K K + + K+ E ++ ++ ++E+
Sbjct: 136 LDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKD--------DEEES------------ 175
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
E++D K E +++ E + S D + M D + +
Sbjct: 176 ESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDE 217
Score = 30.6 bits (69), Expect = 8.1
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKG--KEETEKEEPIQEDEKEGNEEVMREDEN 1479
AE + EE++ ++ E Q + EE +E P ++ +E E ++
Sbjct: 183 SEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDS 242
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETS 1506
+ ++ R + E+ K+ K +TS
Sbjct: 243 EISESRSVSDSEESSPPSKKPKEKKTS 269
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 46.1 bits (109), Expect = 2e-04
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 1404 QVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ 1463
Q N+ PPP E L L EKE V + E+ + + +E K + + EK+EP+Q
Sbjct: 3974 QENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDM-EAADENKEEADAEKDEPMQ 4032
Query: 1464 E----------DEKEGNEEV--MREDENKENDDRKKGEIEDKEEDGKENKSSETSADQ 1509
+ DE ++ + ED+ K N+D + +++ EE ++ S+ +Q
Sbjct: 4033 DEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQ 4090
Score = 42.3 bits (99), Expect = 0.002
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE------------DEKEG- 1469
+AL +K+++ +E ++ + V ++E + + +P E DEKEG
Sbjct: 3943 KALEDKDRQEKEDEEEMSDDVGI-DDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGD 4001
Query: 1470 -NEEVMRED-------ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+++ ED ENKE D +K E E+ +EN + + Q+ + D+ K
Sbjct: 4002 VSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEK 4061
Score = 39.2 bits (91), Expect = 0.026
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKK 1487
+E +E ++K+ E+S E + KE+ K +D +E +E D+ +D+ +
Sbjct: 3913 EEDLLETEQKSNEQSAANNESDLVSKEDDNKA-LEDKDRQEKEDEEEMSDDVGIDDEIQP 3971
Query: 1488 GEIEDKEEDGKENKSSETSADQEIDE 1513
E+ + EN+ + D ++DE
Sbjct: 3972 DIQENNSQPPPENEDLDLPEDLKLDE 3997
Score = 35.0 bits (80), Expect = 0.43
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
+ ++ K+A E+ +Q + E ++ I E E +D
Sbjct: 4150 QVQEDTSTPKEAMSEADRQYQSLGDHLREWQQANRIHEWEDLT-----ESQSQAFDDSEF 4204
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
ED+EED + ++E + ID +A++ D
Sbjct: 4205 MHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPD 4240
Score = 34.6 bits (79), Expect = 0.55
Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 31/119 (26%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEE------EQKGKEETEKEEP----------IQEDEKE 1468
L E E+K E+ A ES ++E E K ++E E EE IQ D +E
Sbjct: 3916 LLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Query: 1469 GNEEVMREDEN-----------KENDDRKKGEIEDKE-EDGKENKSSETSADQEIDEVM 1515
N + E+E+ KE D K ++ED + E ENK AD E DE M
Sbjct: 3976 NNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKE---EADAEKDEPM 4031
Score = 33.8 bits (77), Expect = 0.87
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 24/119 (20%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEE---------QKGKEETEKEEPIQEDEKEG 1469
I E + + +E VK+ EEE + + +++E ++
Sbjct: 4183 NRIHEWEDLTESQSQAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSM 4242
Query: 1470 NEEVMREDENKE------------NDDRKKGEIEDKEEDG---KENKSSETSADQEIDE 1513
N + EDE E +D ++ GE E G + K E S D++I++
Sbjct: 4243 NSTNIAEDEADEVGDKQLQDGQDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIED 4301
Score = 33.8 bits (77), Expect = 0.89
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE----GNEEVMREDE---- 1478
E EE + +EE E+ E +EP +ED E NE+ +E
Sbjct: 3877 ENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLV 3936
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+KE DD K E +D++E + E S D ID+ + D ++
Sbjct: 3937 SKE-DDNKALEDKDRQE---KEDEEEMSDDVGIDDEIQPDIQEN 3976
Score = 32.7 bits (74), Expect = 2.1
Identities = 12/92 (13%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE---GNEEVMREDENKENDDR 1485
++K + + + +++ ++E E N+ + E E +E +
Sbjct: 3804 QEKSNSGELESGTGLGSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESD 3863
Query: 1486 KKGEIED---KEEDGKENKSSETSADQEIDEV 1514
G +D E + +++ D+E++++
Sbjct: 3864 MNGVTKDSVVSENENSDSEEENQDLDEEVNDI 3895
Score = 31.9 bits (72), Expect = 3.9
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKG--------KEETEKEEPIQEDEKE----GNEEVM 1474
E E+ E+ K++EE + E + + T E+ + G E +
Sbjct: 4073 ENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEEL 4132
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
E++ + GE E +ED K + + AD++ +
Sbjct: 4133 GEEDGVRGNGTADGEFEQVQEDTSTPKEAMSEADRQYQSL 4172
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional.
Length = 482
Score = 45.3 bits (108), Expect = 2e-04
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
A K+ K +K ++ ++ E+++K +KEE +E++++ EE E+E
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 1481 ENDDRKKGEIEDK 1493
E + ++ E + K
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 44.9 bits (107), Expect = 3e-04
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
G + +K + EKK+ EE+ K+ + K+E E+EE ++ E+E EE
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 1477 DENKENDDRKKGE 1489
+E KE ++ KK +
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 43.0 bits (102), Expect = 0.001
Identities = 21/84 (25%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
EI+ K+ + KK E+ + + E++ KE+ +K ++ E+E EE +++E
Sbjct: 398 EIEFLTGSKKATKKIKKIVEK---AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 1480 KENDDRKKGEIEDKEEDGKENKSS 1503
KE ++ + E +++EE+ K+ +++
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 41.1 bits (97), Expect = 0.004
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 1425 LAEKEKK-VEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
L E+E + + KKA ++ K E+ +K +EE +KE +K+ +++E +E +
Sbjct: 394 LTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKE------KKKKAFAGKKKEEEEEEE 447
Query: 1484 DRKKGEIEDKEEDGKENKSSETSAD 1508
KK E +++EE+ E + E
Sbjct: 448 KEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 38.4 bits (90), Expect = 0.033
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
E E K+ +K ++K++ EEE ++ EEE++ +EE +EE +E+EK+
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 37.6 bits (88), Expect = 0.057
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
E E+EKK ++KK + ++ EEE+K K+E EKEE +E E+E EE ++ +
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Query: 1479 NK 1480
Sbjct: 476 QA 477
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the maturation
of the 18S rRNA and for 40S ribosome production.
Length = 809
Score = 45.4 bits (108), Expect = 3e-04
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 1422 KRAL-AEKEKKVEEKKKAEEESVKQTEEEQ----KGKEETEKEEPIQEDEKEGNEEVMRE 1476
+RA ++ K EE K E E +K+ E E+ +G+EE ++EE ED KE +++ +
Sbjct: 249 RRAQPTDRTKTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEE---EDSKESADDL--D 303
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
DE + +DD G + +E++ +E + +++ D+
Sbjct: 304 DEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDD 340
Score = 45.0 bits (107), Expect = 3e-04
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 1423 RALAEKEKKVEEK---KKAEEESVKQTEEEQKGKEETEKEEPIQED-------------- 1465
R E+E EE KK E E +++ E++ EE E + +D
Sbjct: 256 RTKTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFG 315
Query: 1466 -----EKEGNEEVMREDENKENDDR-KKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
E E EE +DE++E+DD + E ED + +E + +D E DE +E
Sbjct: 316 LGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEE 375
Query: 1520 TK 1521
+
Sbjct: 376 KE 377
Score = 36.9 bits (86), Expect = 0.089
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
++ + + EEE+ G ++ E EE +D +E E+V DE ++ +D + +D
Sbjct: 310 DDDNFGLGQGEEDEEEEEDGVDD-EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDD 368
Query: 1493 KEEDGKE----NKSSETSADQEI 1511
+EE+ +E K S S E+
Sbjct: 369 EEEEEEEKEKKKKKSAESTRSEL 391
Score = 30.7 bits (70), Expect = 6.8
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 1426 AEKEKKVEEKKKAEEESVKQ--------------TEEEQKGKEETEKEEPIQEDEKEGNE 1471
+ EEK ++ V++ TEEE KEE E+ +++ E E
Sbjct: 225 PKPPMTPEEKDDEYDQRVRELTFDRRAQPTDRTKTEEELA-KEEAER---LKKLEAERLR 280
Query: 1472 EVMREDENKENDDRKKGEIEDKEE----DGKENKSSETSADQEIDEVMTADETKD 1522
+ E+E+ E ++ K +D ++ D +N + E +E + +D
Sbjct: 281 RMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDE-EEEEDGVDDED 334
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with merozoites)
proteins. Variation among SPAM alleles is the result of
deletions and amino acid substitutions in non-repetitive
sequences within and flanking the alanine heptad-repeat
domain. Heptad repeats in which the a and d position
contain hydrophobic residues generate amphipathic
alpha-helices which give rise to helical bundles or
coiled-coil structures in proteins. SPAM is an example of
a P. falciparum antigen in which a repetitive sequence
has features characteristic of a well-defined structural
element.
Length = 164
Score = 42.5 bits (100), Expect = 3e-04
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E E +EK++ +EE ++ EEE + E+ E EE I EDE+E E+ E++N + D +
Sbjct: 39 ENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEED---EEDNVDLKDIE 95
Query: 1487 KGEIEDKEEDGKENK 1501
K I D +++
Sbjct: 96 KKNINDIFNSTQDDN 110
Score = 40.6 bits (95), Expect = 0.002
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 1439 EEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGK 1498
E E VK ++E +EE E EE I+E E +EE + EDE +E +D + E
Sbjct: 39 ENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKN 98
Query: 1499 ENKSSETSADQE 1510
N ++ D
Sbjct: 99 INDIFNSTQDDN 110
Score = 37.9 bits (88), Expect = 0.015
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E + +E + EK++ EE+++ +EE +++ E+ + EE E+ +E+E E + V
Sbjct: 34 EDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIE--DEEEIVEDEEEEEEDE-EDNVD 90
Query: 1475 REDENKEN---------DDRKKGEIEDKEEDGKENKSS 1503
+D K+N DD + I + +++K +
Sbjct: 91 LKDIEKKNINDIFNSTQDDNAQNLISKNYKKNEKSKKT 128
Score = 35.2 bits (81), Expect = 0.11
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 1429 EKKVEEKKKAEE--ESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE--DENKENDD 1484
EKK EE+KK E E VK T KE+ KE NE+V E ++++E ++
Sbjct: 10 EKKPEEEKKDENLLEHVKIT---SWDKEDIIKE----------NEDVKDEKQEDDEEEEE 56
Query: 1485 RKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ EIE+ E+ E + E ++E DE D
Sbjct: 57 EDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKD 93
>gnl|CDD|240061 cd04710, BAH_fungalPHD, BAH, or Bromo Adjacent Homology domain, as
present in fungal proteins containing PHD domains. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 135
Score = 41.6 bits (98), Expect = 4e-04
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 648 PFGIGYIVAIFKKKGKKNV------SASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYW 701
P+ IG I+ K + AS + + +YRP + R V +L LY
Sbjct: 28 PYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRVVADSRL----LYA 83
Query: 702 SDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAY 746
S + + V+GKC V D + + + R P+ FYF++ +
Sbjct: 84 SMHSDICPIGSVRGKCTVRHRDQI-PDLEEYKKR-PNHFYFDQLF 126
Score = 30.0 bits (68), Expect = 3.6
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 39/151 (25%)
Query: 406 ALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHIL------------ 453
L GE +KV D++ + S+ P P +G++ M+ +
Sbjct: 5 VLKNGELLKVNDHIYMSSEPPGEPYYIGRI------MEFVPKHEFPSGIHARVFPASYFQ 58
Query: 454 ----WFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKH---FPISENWAMQGG 506
W+ R ++ ++D + L+ D + +V C V+H P E + +
Sbjct: 59 VRLNWYYRPRDISRRVVADSRLLYASMHSDICPIGSVRGKCTVRHRDQIPDLEEYKKRPN 118
Query: 507 CPQPTPPVDREDERSFYYRQTYDPLHARFCD 537
FY+ Q +D R+ D
Sbjct: 119 H--------------FYFDQLFDRYILRYYD 135
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK motif.
Length = 189
Score = 42.4 bits (100), Expect = 6e-04
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1426 AEKEKKVEEK--KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
A+K K+EEK ++ + E+ ++ EE+K EE + E +E+E E E E K+ +
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELE------EEREKKKEE 58
Query: 1484 DRKKGEIEDKEEDGKENK--SSETSADQEIDEVMTADE 1519
+ +K E ++ +E + S ++E + ++ADE
Sbjct: 59 EERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADE 96
Score = 39.7 bits (93), Expect = 0.004
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVK-QTEEEQKGKEETEKEEPIQED-------- 1465
E E K+ ++E + +E+++ EEE K + EEE+K +EE ++E QE+
Sbjct: 25 EEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKE--QEEYEKLKSSF 82
Query: 1466 --EKEGNEEVMREDENKE 1481
E+EG +++ ++E+ E
Sbjct: 83 VVEEEGTDKLSADEESNE 100
Score = 35.4 bits (82), Expect = 0.11
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 1417 LGREIKRALAEKEKKVE----EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+G + + L EK+ + + E+++ EE + + E + KEE E EE E EK+ EE
Sbjct: 3 IGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEE---EREKKKEEE 59
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+E E + ++E+ ++ KSS ++ D++ +E+
Sbjct: 60 ERKEREEQA---------RKEQEEYEKLKSSFVVEEEGTDKLSADEESN 99
Score = 35.1 bits (81), Expect = 0.13
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
RE + E+ KK+EEK++ E + ++ EEE++ K+E E+ + +E ++ EE +
Sbjct: 21 REAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKS 80
Query: 1479 ----NKENDDRKKGEIEDKE 1494
+E D+ + E E
Sbjct: 81 SFVVEEEGTDKLSADEESNE 100
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 43.9 bits (104), Expect = 7e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 1415 EALGREIKRALAEKEKKVEE-----------KKKAEE--ESVKQTEEEQKGKEETEKEEP 1461
E RE++ + E +K++EE K+KAEE + + EE E EK
Sbjct: 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLS 317
Query: 1462 IQEDEKEGNEEVMREDENKENDDRKKGEIEDKEE 1495
E+E G EE ++E E KE + E++ K +
Sbjct: 318 RLEEEINGIEERIKELEEKE---ERLEELKKKLK 348
Score = 38.5 bits (90), Expect = 0.037
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQED-----EKEG 1469
+ IK L EKE+++EE KK +E K+ EE ++ E E+ + +E+ ++
Sbjct: 324 NGIEERIKE-LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLT 382
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
+ ++ E ++ K EIE++ +EI E+ A
Sbjct: 383 GLTPEKLEKELEELEKAKEEIEEEISKITARIG---ELKKEIKELKKA 427
Score = 37.7 bits (88), Expect = 0.057
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 1420 EIKRALAEKEK---KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
E+K + E EK +E K+ EE +++ EE + ++ +E ++E KE E ++E
Sbjct: 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE--LEEKVKELKE--LKE 290
Query: 1477 DENKENDDRK-KGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ + E D+ + ++ S I+E + E K
Sbjct: 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
Score = 36.6 bits (85), Expect = 0.14
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
REI ++ + ++ E+ + E+ VK+ EE ++ EE EKE E K EE +RE E
Sbjct: 207 REINE-ISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELE 265
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSAD 1508
+ + K EIE+ EE KE K + A+
Sbjct: 266 ERIEE--LKKEIEELEEKVKELKELKEKAE 293
Score = 36.2 bits (84), Expect = 0.16
Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE-EPIQEDEKEGNEEV 1473
E I+ + E E+K E ++ +++ +E EK E ++E + EE
Sbjct: 320 EEEINGIEERIKELEEKEERLEELKKK-----------LKELEKRLEELEERHEL-YEEA 367
Query: 1474 MREDENKENDDRKKG--EIEDKEEDGKENKSSETSADQEIDEV 1514
+ E E ++ E E++ +E + ++ ++EI ++
Sbjct: 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKI 410
Score = 35.8 bits (83), Expect = 0.22
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 1417 LGREIKRALAEKEKKVE-EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV-- 1473
L EIK E EK E +KK AE E EE+ + E EE E +E E +
Sbjct: 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
Query: 1474 MREDENKENDDRK-KGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ N+ + + + E+E +E++ K+ + A +E+ E E
Sbjct: 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLE 643
Score = 35.8 bits (83), Expect = 0.22
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK-EEPIQEDEKEGNEEVMREDE 1478
E+K A E E++ +E KK EEE K EE + ++ E+ + ++E EK+ +EE E E
Sbjct: 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE---EYE 662
Query: 1479 NKENDDRKKG-EIEDKEEDGKENKSSETSADQEIDE 1513
+ + E+ + +E + + +++
Sbjct: 663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEK 698
Score = 34.3 bits (79), Expect = 0.71
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+I + E +K+++E KKA EE ++ KGK E +E KE EE E +
Sbjct: 408 SKITARIGELKKEIKELKKAIEEL-----KKAKGKCPVCGRELTEEHRKELLEEYTAELK 462
Query: 1479 NKENDDRKKGEIEDKEEDGKENK 1501
E + EIE+KE ++
Sbjct: 463 RIEKE---LKEIEEKERKLRKEL 482
Score = 33.1 bits (76), Expect = 1.6
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTE--EEQKGKEETEKEEPIQE-DEKEGNEEVMRED---- 1477
L E K+++ + + E+ +K+TE EE ++E E EE ++E +E +RE+
Sbjct: 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL 226
Query: 1478 -ENKENDDRKKGEIEDKEEDGKENKSSETSA 1507
+ + + K EIE+ E KE +S E S
Sbjct: 227 EKEVKELEELKEEIEELE---KELESLEGSK 254
Score = 32.7 bits (75), Expect = 1.9
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 1415 EALGREIKRALAEKEKKVEE--KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
E +E+K+ E +K EE + + E +++ EE + K E+ E ++E+ E + E
Sbjct: 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE 674
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
+ E ++++ EI+ E KE A +E+
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
Score = 31.2 bits (71), Expect = 5.5
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 1417 LGREIKRALAEKE---KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
L RE+ AE E K+ EE KK E+ ++ EE +K K+E EK E E +E E+V
Sbjct: 671 LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKV 730
Query: 1474 MR-EDENKENDDRKKGEI 1490
+ + KE K GEI
Sbjct: 731 KKYKALLKERALSKVGEI 748
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 43.6 bits (104), Expect = 8e-04
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE-----EPIQEDEKEGNEEV 1473
E KR L E +K+ E KK K EE K + E EKE +Q+ EK ++
Sbjct: 38 EEAKRILEEAKKEAEAIKKEALLEAK--EEIHKLRNEFEKELRERRNELQKLEKRLLQKE 95
Query: 1474 MREDENKENDDRKKGEIEDKEEDGK------ENKSSE-----TSADQEIDEV--MTADET 1520
D E ++++ E+E KE++ + E K E QE++ + +TA+E
Sbjct: 96 ENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA 155
Query: 1521 K 1521
K
Sbjct: 156 K 156
Score = 33.2 bits (77), Expect = 1.3
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 1430 KKVEEKK--KAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM--REDENKENDDR 1485
KK+ E K +AEEE+ + EE +K E +KE E EE+ R + KE +R
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA-----LLEAKEEIHKLRNEFEKELRER 80
Query: 1486 KKGEIEDKEE 1495
+ E++ E+
Sbjct: 81 RN-ELQKLEK 89
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus spores
are protected by a protein shell consisting of over 50
different polypeptides, known as the coat. This family of
proteins has an important morphogenetic role in coat
assembly, it is involved in the assembly of at least 5
different coat proteins including CotB, CotG, CotS, CotSA
and CotW. It is likely to act at a late stage of coat
assembly.
Length = 185
Score = 41.7 bits (98), Expect = 9e-04
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
I + EKE EEK+ ++E + EE++ EE EKE+ E E+E E ++E
Sbjct: 32 IIKKADEKE---EEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIA 88
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ +++++ + K+++ K + + ++E
Sbjct: 89 QEEEKEEEAEDVKQQEVFSFKRKKPFKEMNLEE 121
Score = 31.0 bits (70), Expect = 3.5
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 1442 SVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENK 1501
K E+E++ + E + +E++K EE +E E E + E ++KEE +E +
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 1502 SSETSADQEIDEV 1514
E + D + EV
Sbjct: 93 KEEEAEDVKQQEV 105
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part of
a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 43.5 bits (103), Expect = 0.001
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 1413 MGEALGREIK--RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
E L RE++ E+E + KK E++ + + K+E E +++
Sbjct: 393 EIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKE 452
Query: 1471 EEVMREDENKENDDRKKGEI------------EDKEEDGKENKSSETSADQEIDE 1513
+ E E++E +K E++EE +EN +T++
Sbjct: 453 SDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSA 507
Score = 35.8 bits (83), Expect = 0.23
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQK-GKEETEKEEPIQEDEKEGNEEVMRED 1477
EI+ E E + E ++ EE K+ +K G E EKE ++ +KE E
Sbjct: 392 AEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEF---K 448
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E KE+D+ + E+ED+EE E +++ E
Sbjct: 449 EKKESDE--EEELEDEEEAKVEKVANKLLKRSE 479
Score = 33.9 bits (78), Expect = 0.74
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK---EGNEEVMREDE--NK 1480
AE KK E + EE + EE+ +EE E+ + N E E + K
Sbjct: 382 AEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKK 441
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
EN + K + E EE+ E++ +
Sbjct: 442 ENKNEFKEKKESDEEEELEDEEEAKVEKVANKLL 475
Score = 33.9 bits (78), Expect = 0.85
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEEKK---KAEEESVKQTEEEQKG-KEETEKEEPIQED 1465
P + + LG+ + E+ + K +AE ++ + E + + E E EE E+
Sbjct: 351 PWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEE 410
Query: 1466 EKEGNE--EVMRE---DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADET 1520
E E V R EN E + K ++ + + KE K S+ + E +E ++
Sbjct: 411 ENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKV 470
Query: 1521 KD 1522
+
Sbjct: 471 AN 472
Score = 33.1 bits (76), Expect = 1.4
Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK-EEPIQEDEKEG------ 1469
G+ + +++ EE+ + ++E E +++ K +E ++E G
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKF 378
Query: 1470 --NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQ 1509
E +++EN + + E+E +EE +E + +
Sbjct: 379 MQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNV 420
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 42.5 bits (100), Expect = 0.001
Identities = 18/93 (19%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
R++ ++ E+ +E + A+ E E+E KE+ + ++ E+E+ G+ + + ED
Sbjct: 200 RDMLSSMDMAEELGDEPESADSE---DNEDEDDPKEDEDDDQ--GEEEESGSSDSLSEDS 254
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
+ +++ +E E + E + +T +
Sbjct: 255 DASSEE-----MESGEMEAAEASADDTPDSDDA 282
Score = 35.2 bits (81), Expect = 0.25
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 1406 GNAVPPPMGE--ALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ 1463
G A P + L R A K+ ++++ + + + EE
Sbjct: 156 GRAPPSSAEKLVDLWRPWIEDKAGKDLDRLAACVDDQQAFARVVRDMLSSMD-MAEELGD 214
Query: 1464 EDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
E E +E+ ED+ KE++D +GE E+ ++ S+ S+++ M A E
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAE 270
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1, of
polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 42.9 bits (101), Expect = 0.001
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKK 1487
+KK +EKK+ +E S +EE + EE+ K + I EDE + +++ E++ +
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESE--EESGKRDVILEDESAEPTGL--DEDEDEDEPKPS 277
Query: 1488 GEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
GE D EE+ +E + + + + ++M ++ +
Sbjct: 278 GERSDSEEETEEKEKEK---RKRLKKMMEDEDEDE 309
Score = 36.4 bits (84), Expect = 0.12
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQK----GKEETEKE-EPIQEDEKEGNEEVMREDENKE 1481
E V+E+ + E E++ G +E E E EP E+ +EE E E ++
Sbjct: 235 ASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEK 294
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMT 1516
KK ED++ED + E+ E +E
Sbjct: 295 RKRLKKMM-EDEDEDEEMEIVPES--PVEEEESEE 326
Score = 36.0 bits (83), Expect = 0.15
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE--DEKEGNEEVMREDENKEND 1483
A K+ KK S + + ++K +++ E ++E +E+ G +V+ EDE+ E
Sbjct: 204 AASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPT 263
Query: 1484 DRKKGEIED-KEEDGKENKSSETSADQE 1510
+ E ED + G+ + S E + ++E
Sbjct: 264 GLDEDEDEDEPKPSGERSDSEEETEEKE 291
Score = 35.2 bits (81), Expect = 0.24
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
++++ +E K + E S + E E+K KE+ ++ + + EDE E E + + E ++
Sbjct: 265 LDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEES 324
Query: 1486 KKGEIEDKEEDGKENKSSETSADQE 1510
++ E + +E + S D
Sbjct: 325 EEPEPPPLPKKEEEKEEVTVSPDGG 349
Score = 34.0 bits (78), Expect = 0.65
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 1411 PPMGEALGREIKRALAEKEKKVEEKK--------KAEEESVKQTEEE---QKGKEETEKE 1459
+ +E + ++E + E K AE + + E+E + E ++ E
Sbjct: 225 KTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSE 284
Query: 1460 EPIQEDEKEGNEEV--MREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
E +E EKE + + M EDE+++ + E +EE+ +E + +E E +T
Sbjct: 285 EETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTV 344
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 42.3 bits (99), Expect = 0.001
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 1411 PPMGEALGREIKRALAEKEKKVEEKKKAEEESVK-QTEEEQKGKEETEKEEPIQEDEKEG 1469
PP + E E+E+ E + EEE + ++ +G E +EE + + +
Sbjct: 168 PPAQPDVDNE------EEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDD 221
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
E+V+ D E D+K+GE E+ EE+ E + +EV +E
Sbjct: 222 GEDVV--DYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEES 271
Score = 41.5 bits (97), Expect = 0.002
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQED-EKEGNEEVMRED 1477
E + E+ VE + AE+ V + E+ ++ P Q D + E E + D
Sbjct: 128 VEEPSEKVD-EEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESD 186
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEID 1512
+E +D + G E + + N+ E A+ D
Sbjct: 187 GREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDD 221
Score = 39.6 bits (92), Expect = 0.008
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 1398 ILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE 1457
I+ + + + PP + E +R ++ EE ++ +S + E +EE E
Sbjct: 156 IVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEE 215
Query: 1458 KEEPIQEDEKEGNEEVMREDENKENDDRKKGE----IEDKEEDGKENKSSETSADQE 1510
E D+ E + E +K+ + ++ E + E +E+ S E + E
Sbjct: 216 AE---GSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNE 269
Score = 39.2 bits (91), Expect = 0.012
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQ----KGKEETEKEEPIQEDEKEGNEEV 1473
R + + + ++ + V EEE+ G+EE E EE + EGN E+
Sbjct: 149 PRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNREL 208
Query: 1474 MRE-DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
E +E E D + ++ + E + + E ++E+ + + ++
Sbjct: 209 NEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEE 258
Score = 33.4 bits (76), Expect = 0.80
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
E +++ E++ EEE+ + E E E+ + Q +E+E EEV+ E + ++
Sbjct: 202 GEGNRELNEEE--EEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEES 259
Query: 1486 KKGEIEDKEEDGKENKSSET 1505
E+ E+ K
Sbjct: 260 PSEEVPRNNEESPAKKQKVE 279
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 41.6 bits (98), Expect = 0.001
Identities = 15/84 (17%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 1436 KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG-----NEEVMREDENKENDDRKKGEI 1490
+++ + + E ++ +ET + E ++E+EKE E+ ++ E + + E
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Query: 1491 EDKEEDGKENKSSETSADQEIDEV 1514
+++ D E ++ E + E+
Sbjct: 99 DEESSDENEKETEEKTESNVEKEI 122
Score = 40.5 bits (95), Expect = 0.003
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKK 1487
+ KK ++++ AE E VK EEE++ +KE+ ++ EDE E ++ ++
Sbjct: 50 EAKKSDDQETAEIEEVK--EEEKEAANSEDKEDKGDAEK---------EDEESEEENEEE 98
Query: 1488 GEIEDKEEDGKENKSSETSADQEI 1511
E E + + + +E++ ++EI
Sbjct: 99 DEESSDENEKETEEKTESNVEKEI 122
Score = 39.3 bits (92), Expect = 0.008
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E K++ ++ ++EE K+ E+E+ ++E KG E E EE +E+E+E E E+E
Sbjct: 50 EAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEES-SDENEK 108
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSET-SADQEIDEVMTADET 1520
+ + E E N S + +Q MT D
Sbjct: 109 ETE-----EKTESNVEKEITNPSWKPVGTEQTGPHAMTFDSG 145
Score = 37.8 bits (88), Expect = 0.022
Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGK-EETEKEEPIQEDEKEGNEEVMREDENK 1480
A E++ ++ E +++ +EE+K +KE+ ++++ E E+E +
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESE--EENEEE 98
Query: 1481 ENDDRKKGEIEDKEEDGKEN 1500
+ + + E KE + K
Sbjct: 99 DEESSDENE---KETEEKTE 115
Score = 36.6 bits (85), Expect = 0.062
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 1443 VKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKS 1502
+ +Q +E E + + E EEV E++ N + K+ + + ++ED + +
Sbjct: 36 FPSSPSDQAAADEQE-AKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Query: 1503 SETSADQEIDEVMTADETKD 1522
+E ++ DE E K
Sbjct: 95 NEEEDEESSDENEKETEEKT 114
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner membrane
complex of itself with TolQ and TolR to the outer
membrane complex of TolB and OprL (also called Pal). Most
of the length of the protein consists of low-complexity
sequence that may differ in both length and composition
from one species to another, complicating efforts to
discriminate TolA (the most divergent gene in the tol-pal
system) from paralogs such as TonB. Selection of members
of the seed alignment and criteria for setting scoring
cutoffs are based largely conserved operon struction.
//The Tol-Pal complex is required for maintaining outer
membrane integrity. Also involved in transport (uptake)
of colicins and filamentous DNA, and implicated in
pathogenesis. Transport is energized by the proton motive
force. TolA is an inner membrane protein that interacts
with periplasmic TolB and with outer membrane porins
ompC, phoE and lamB [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 346
Score = 42.5 bits (100), Expect = 0.001
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE-----KEEPIQEDEKEGNEEVM 1474
+ + + K+ EEK+K EE+ + E K K E E KEE ++ E+E +
Sbjct: 102 KAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAA 161
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENK 1501
E + K + +KK E E K + + K
Sbjct: 162 AEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 41.7 bits (98), Expect = 0.002
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE-KEEPIQEDEKEGNEEVMREDENKE 1481
RA AEK K E+ + E ++ EE K K+ E K + E EK+ EE ++ E +E
Sbjct: 97 RAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAE-EE 155
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ E + K + K+ +E A E A+E K
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKA 196
Score = 39.4 bits (92), Expect = 0.010
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPI---------------- 1462
+E ++ L ++ ++ E+++ AE+ K+ E+ ++ ++ E
Sbjct: 67 QERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKA 126
Query: 1463 -QEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENK 1501
Q E + E E + KE + +K+ E E K + E K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKE-EAKKQAEEEAKAKAAAEAK 165
Score = 39.0 bits (91), Expect = 0.014
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 1423 RALAEKEKK--VEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
+ AE + K E +KKA+EE+ KQ EEE K K E ++ E +K+ E + E K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK 186
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
K E + K E K ++E +A E + A
Sbjct: 187 AK--AKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAA 221
Score = 38.3 bits (89), Expect = 0.024
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 1420 EIKRALAEKEKKVEEKK-KAEEESVKQTE--EEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
+ + EK+K+ EE K K E+ + E E+K KEE +K+ + K E +
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168
Query: 1477 DENK---ENDDRKKGEIEDK---EEDGKENKSSETSADQE 1510
E K E + + K E + K EE + ++++ A E
Sbjct: 169 AEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Score = 37.9 bits (88), Expect = 0.035
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 1422 KRALAEKEKKVEE-KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
+A AE +KK E KKKAE E+ + E + K K E K + K E + +
Sbjct: 158 AKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEA 217
Query: 1481 ENDDRK 1486
Sbjct: 218 AAAAAA 223
Score = 34.0 bits (78), Expect = 0.62
Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEE--KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK 1467
P G I+ L + ++ + + +++ + E+E++ K E + EE ++
Sbjct: 27 VKPEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAA 86
Query: 1468 EGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEID 1512
E + E K+ E K+ + K+ ++ E A Q +
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 41.3 bits (97), Expect = 0.001
Identities = 16/78 (20%), Positives = 41/78 (52%)
Query: 1436 KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEE 1495
+K +++ + EE KE KEE ++E EE+ +E+ +++++ + +IE+ ++
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 1496 DGKENKSSETSADQEIDE 1513
+ + K + E++
Sbjct: 62 ENNKLKEENKKLENELEA 79
Score = 39.7 bits (93), Expect = 0.006
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
E E K E+K K E+ ++ E+E+ ++ E E E+ K+ N ++ E++ EN+
Sbjct: 20 ENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENE 76
Score = 39.4 bits (92), Expect = 0.006
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 1451 KGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + + K E ++ED + NE ++E+K ++ + E +KEE ++++ S +E
Sbjct: 2 EKECKDAKHENMEEDCCKENEN---KEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEE 58
Query: 1511 IDEVMTA--DETK 1521
+ + +E K
Sbjct: 59 LKDENNKLKEENK 71
Score = 31.3 bits (71), Expect = 3.1
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E+ ++ + +EE +EE EE EKEE I++ E+ + EV E+ EN
Sbjct: 12 NMEEDCCKENENKEEDKG--KEEDLEFEEIEKEEIIEDSEE--SNEVKIEELKDEN---N 64
Query: 1487 KGEIEDK 1493
K + E+K
Sbjct: 65 KLKEENK 71
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 41.9 bits (98), Expect = 0.002
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 1420 EIKRALAEKEKKVE-------EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
K+ +++KK E K+ AE+E +KQ E+E+ +E +K+ E + + ++
Sbjct: 73 SAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQK 132
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSAD 1508
E K ++KK K + E + +A+
Sbjct: 133 QQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAE 168
Score = 41.5 bits (97), Expect = 0.003
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 1399 LEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEE-EQKGKEETE 1457
E+ ++ A EA +A AE +KK EE KA EE+ + E K K E E
Sbjct: 143 AEQKKKAEAAKAKAAAEA---AKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAE 199
Query: 1458 ----KEEPIQEDEKEGNEEVMREDENKEN---DDRKKGEIEDKEEDGKENKSSETSADQE 1510
E+ E E + E E +E + +K ++ K++E A
Sbjct: 200 AKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAA 259
Score = 38.4 bits (89), Expect = 0.027
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 1420 EIKRALAEKEKKVEEK-KKAEEESVKQTEEEQ--------KGKEETEKEEPIQEDEKEGN 1470
E ++ E EK+ + + K+ EE++ K E++ K E K + E +K+
Sbjct: 115 EQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAE 174
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
E +E K K K++ E K++ A E + A++
Sbjct: 175 EAAKAAEEAK----AKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKA 221
Score = 38.0 bits (88), Expect = 0.031
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 1420 EIKRALAEKEK---KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE-KEGNEEVMR 1475
+A AE K E KKKAEE + EE K K E + E E K E+
Sbjct: 152 AKAKAAAEAAKLKAAAEAKKKAEEA--AKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKA 209
Query: 1476 EDENKENDDRK-KGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
E E K ++K + E+K K+ +++ AD+ A+
Sbjct: 210 EAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAER 254
Score = 32.2 bits (73), Expect = 2.2
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 1433 EEKKKAEEESVKQTE---EEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGE 1489
KK E++ K+ E EE K K+ E +E +++ EKE + ++ + +E + + + E
Sbjct: 72 SSAKKGEQQRKKKEEQVAEELKPKQAAE-QERLKQLEKERLKAQEQQKQAEEAEKQAQLE 130
Query: 1490 IEDKEE 1495
+ +EE
Sbjct: 131 QKQQEE 136
Score = 31.1 bits (70), Expect = 5.7
Identities = 20/87 (22%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 1437 KAEEESVKQTEEEQKGKEETEKEE--PIQEDEKEGNEEVMREDENKENDDRKKGEIEDKE 1494
++++ S K+ E+++K KEE EE P Q E+E ++ + ++ K + +K+ E +K+
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQ-LEKERLKAQEQQKQAEEAEKQ 126
Query: 1495 EDGKENKSSETSADQEIDEVMTADETK 1521
++ + E + ++ A+ K
Sbjct: 127 AQLEQKQQEEQARKAAAEQKKKAEAAK 153
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide independent.
Length = 171
Score = 39.7 bits (92), Expect = 0.003
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 1409 VPPPMGEALGREIKRALAEKEKKVEEKKKAEE-------ESVKQTEEEQKGKEETEKEEP 1461
P G E R LAEK ++ E+++ EE E + EE K + E+
Sbjct: 12 GKPTAGTTDAEEATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRR 71
Query: 1462 IQEDEKEGNEEVMREDENK--ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+E ++ E ++E + ++ +K E E++E K+ + +E A +E + +
Sbjct: 72 EEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERM 126
Score = 37.0 bits (85), Expect = 0.027
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E + E+ ++ EE++ E+E + + E++ K+E E++E IQ+ +KE E RE+
Sbjct: 66 EERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQK-QKEEAEARAREEAE 124
Query: 1480 KENDDRKKGEIEDKEE 1495
+ +R+K + ++E
Sbjct: 125 RMRLEREKHFQQIEQE 140
Score = 34.3 bits (78), Expect = 0.27
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 1422 KRALAEKEKKVEE---KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+R E+++ E ++ AEE + EEE + +EE E ++ +++ EE +E E
Sbjct: 46 RREQEEQDRLEREELKRRAAEERL--RREEEARRQEEERAREKEEKAKRKAEEEEKQEQE 103
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSE 1504
+E ++K E E + + E E
Sbjct: 104 EQERIQKQKEEAEARAREEAERMRLE 129
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 41.9 bits (98), Expect = 0.003
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 1411 PPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
+ E E+ K +E K E+ + K K E E+E + D + N
Sbjct: 178 KLIEETENLAELIIDLEELKL-QELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLN 236
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
EE + + D++++ E +E + +E ++ + + +E
Sbjct: 237 EERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEE 279
Score = 41.5 bits (97), Expect = 0.005
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
E +A E+E + E++ EE + + E+ +EE KEE ++E E EE E
Sbjct: 794 EEKLKAQ-EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 852
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+E +R + EI +E + E +Q++ +
Sbjct: 853 AEEELERLEEEITKEELLQELLLKEEELEEQKLKD 887
Score = 40.3 bits (94), Expect = 0.011
Identities = 20/94 (21%), Positives = 46/94 (48%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
+ + L E EK++++ +K ++ ++ EE +K +E E + +E+E+E E++ + E
Sbjct: 312 DDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQ 371
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E + K ++E + E + +E
Sbjct: 372 LEEELLAKKKLESERLSSAAKLKEEELELKNEEE 405
Score = 40.0 bits (93), Expect = 0.012
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E + ++ + E+EK+ + ++ EE + EEE+ E + E +DE++ E
Sbjct: 265 EEILAQVLKENKEEEKEKKLQE--EELKLLAKEEEELKSELLKLERRKVDDEEKLKES-- 320
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
E E K+ + K E E+ EE KE K E + E +E
Sbjct: 321 -EKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEE 359
Score = 38.8 bits (90), Expect = 0.025
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EA+ + E+ E +K +EE K+ EEE+ + KE E +
Sbjct: 927 EAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKE----ELGNVNLMAIA 982
Query: 1475 REDENKENDDRKKGEIEDKEE 1495
+E +E ++ + + E EE
Sbjct: 983 EFEEKEERYNKDELKKERLEE 1003
Score = 38.4 bits (89), Expect = 0.040
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+E + ++ +K EE + K+ E+E+K +EE K E+E + +
Sbjct: 247 LRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKL---LAKEEEELKSEL 303
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
+ E ++ DD +K + +KE + E ++E
Sbjct: 304 LKLERRKVDDEEKLKESEKE---LKKLEKELKKEKEE 337
Score = 38.0 bits (88), Expect = 0.045
Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+ + L K+ EE K + ++ ++++ +E+EKE E E + +E + E E
Sbjct: 283 KLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELE 342
Query: 1479 N-KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+ + K+ E++EE ++ + ++E+
Sbjct: 343 KELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAK 379
Score = 37.6 bits (87), Expect = 0.057
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV- 1473
E L E ++ E++ K EK+ + E + E+E+ + E E +E + E E EE
Sbjct: 302 ELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQ 361
Query: 1474 MREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + + K + + E+ K++ E SS +E
Sbjct: 362 LEKLQEKLE--QLEEELLAKKKLESERLSSAAKLKEE 396
Score = 37.3 bits (86), Expect = 0.081
Identities = 22/113 (19%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEET----EKEEPIQED--------- 1465
+++++ L ++++++EE +K +E + E E++ +E+ EK E ++E+
Sbjct: 325 KKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLES 384
Query: 1466 -----EKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ EE + +E + + E+ ++EED + + E E E
Sbjct: 385 ERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELE 437
Score = 35.3 bits (81), Expect = 0.28
Identities = 16/107 (14%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKG----KEETEKEEPIQEDEKEGNEEVM 1474
E+K K K+ +K + ++ E E++ EE I ++ +E
Sbjct: 194 EELKLQE-LKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQE 252
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ +K+ ++++ + ++ KE + + ++E+ + +E
Sbjct: 253 EIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEEL 299
Score = 34.2 bits (78), Expect = 0.70
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN---- 1482
EK KK E KK EE+ E +E +E ++E K+ E +++ +
Sbjct: 168 EKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENL 227
Query: 1483 --DDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
D K E + + + + + E+ +E
Sbjct: 228 LYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILA 269
Score = 33.8 bits (77), Expect = 0.85
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEE--EQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
E+ A++++K E+ K+ EEE K+ E+ G +E E+ N++ +++
Sbjct: 939 EELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKK 998
Query: 1477 DENKENDDRKKGEIEDKEE 1495
+ +E EI ++
Sbjct: 999 ERLEEEKKELLREIIEETC 1017
Score = 33.0 bits (75), Expect = 1.8
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKA--EEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
E +++K L KE+K +E+KK EE EE++ + E E K +
Sbjct: 877 EEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYES 936
Query: 1471 EEVM-----REDENKENDDRKKGEIEDK------EEDGKEN 1500
E +++ KE D++++ E +K EE G N
Sbjct: 937 EPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVN 977
Score = 31.5 bits (71), Expect = 4.1
Identities = 11/72 (15%), Positives = 25/72 (34%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E + K+ + + +EE+ K+E +KE +E ++ E + +
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQR 1019
Query: 1480 KENDDRKKGEIE 1491
+ I
Sbjct: 1020 FKEFLELFVSIN 1031
Score = 31.1 bits (70), Expect = 5.8
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESV------KQTEEEQKGKEETEKEEPIQEDEKEGN 1470
G +++ K E + + EEE+ K+ E +K EETE + D +E
Sbjct: 141 QGGKVEIIAM---MKPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELK 197
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKEN 1500
+ ++ E + + ++++K E +EN
Sbjct: 198 LQELKLKE-QAKKALEYYQLKEKLELEEEN 226
>gnl|CDD|240066 cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Homology domain, as
present in the Schizosaccharomyces pombe homolog of
Saccharomyces cerevisiae Orc1p and similar proteins.
Orc1 is part of the Yeast Sir1-origin recognition
complex, the Orc1p BAH doman functions in epigenetic
silencing. BAH domains are found in a variety of
proteins playing roles in transcriptional silencing and
the remodeling of chromatin. It is assumed that in most
or all of these instances the BAH domain mediates
protein-protein interactions.
Length = 159
Score = 39.4 bits (92), Expect = 0.003
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 390 WQGEGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRK 449
+GEG + +Y+S G E ++ D V V + D P +GK+ +YE + +K
Sbjct: 7 KRGEGGKKKDGQFYRSFTYDGVEYRLYDDVYVHNGDSE--PYIGKIIKIYETAIDSGKKK 64
Query: 450 CHILWFARGQETVLEELSDPQ----ELFLLEACDD 480
++WF R E +E +P+ E+FL AC
Sbjct: 65 VKVIWFFRPSEIRMELKGEPKRHINEVFL--ACGR 97
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA;
Provisional.
Length = 387
Score = 40.9 bits (96), Expect = 0.004
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE-NKENDD 1484
AE+++K +E+++AEE KQ E+++ K+ ++ QE +K+ E + K+ ++
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136
Query: 1485 RKKGEIED-KEEDGKENKSSETSADQEIDE 1513
K + E K + +A + E
Sbjct: 137 AAAKAAAAAKAKAEAEAKRAAAAAKKAAAE 166
Score = 38.6 bits (90), Expect = 0.025
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE-----KEEPIQEDEKEGNEEVMRE 1476
+A AE ++ KKA E+ K+ E E K E + E + E ++ E
Sbjct: 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
Query: 1477 DENK-ENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ K + +KK E K K ++ +A++
Sbjct: 207 AKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKA 241
Score = 35.6 bits (82), Expect = 0.18
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
L +K+ +E+ K E+ +E++K EE K+ +++ + E + +
Sbjct: 92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEA 151
Query: 1485 RKKGEIEDK---EEDGKENKSSETSADQEID 1512
K + K+ +E + +
Sbjct: 152 EAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
Score = 35.2 bits (81), Expect = 0.25
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE- 1478
+K+ E+ E+KK+AEE + KQ +QK EE + + + E R
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAA-KQAALKQKQAEEAAAKAA-AAAKAKAEAEAKRAAAA 159
Query: 1479 -NKENDDRKKGEIEDKEEDGKENKSSETSA 1507
K + KK + + + A
Sbjct: 160 AKKAAAEAKKKAEAEAAKKAAAEAKKKAEA 189
Score = 34.8 bits (80), Expect = 0.34
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 1424 ALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN---K 1480
A+ E+ + ++++K S K+ EE++K KE+ + EE Q+ E +E +++ E
Sbjct: 59 AVVEQYNRQQQQQK----SAKRAEEQRKKKEQQQAEELQQKQAAE--QERLKQLEKERLA 112
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ +K+ E K+ K+ ++ E +A A+
Sbjct: 113 AQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEA 151
Score = 33.2 bits (76), Expect = 1.1
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEE-EQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
++ + A E+ K++E+++ A +E KQ EE ++ + ++ E + +
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAE 152
Query: 1478 ENKENDDRKKGEIEDK---EEDGKENKSSETSADQEIDEVMTADE 1519
+ KK E K E + + ++E E + A
Sbjct: 153 AKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAA 197
Score = 30.2 bits (68), Expect = 9.8
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 1415 EALGREIKRALAEKE--KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
E L + K LA +E K+ EE K KQ EE K + E ++
Sbjct: 101 ERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA 160
Query: 1473 VMREDENK---ENDDRKKGEIEDKEEDGKENK 1501
E K E + KK E K++ E
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAA 192
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 41.6 bits (98), Expect = 0.004
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
E ++ + E + ++EE ++ EE ++ E ++ EE E E + + E E +E
Sbjct: 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN--ELEE 320
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+E + K +IE +E+ +E ++ +Q + E+ A E
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361
Score = 41.2 bits (97), Expect = 0.005
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
EI E+ E ++ EE + E+ + KEE E+ E + E+ ++ E+ E
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361
Query: 1479 NKEND-DRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADET 1520
E E+E+ E +E + + EI + +
Sbjct: 362 ELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404
Score = 40.5 bits (95), Expect = 0.009
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E L E++ E E+ E ++ EEE E K KEE E+ E ++ +E EE+
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799
Query: 1475 RE-DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
E +E + D + E+E E+ + + ++EI+E+
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840
Score = 39.3 bits (92), Expect = 0.019
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E++ L E+ + + K+ EE ++ + Q+ EE E+E ++E E+ + +
Sbjct: 762 ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEE--LEEAERRLDALERELESL 819
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
++ +R + EIE+ EE+ +E + ++E++E+
Sbjct: 820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEEL 854
Score = 38.5 bits (90), Expect = 0.029
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQK--GKEETEKEEPIQEDEKEGNEEVMRED 1477
E++ A E E+K+ + EE + EE E E ++E ++E R +
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVM 1515
E + K E+++ E + +E ++ ++E++E+
Sbjct: 415 RLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452
Score = 38.2 bits (89), Expect = 0.047
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+ +K L E +EE ++ EE + + E+ +E EE +++ + E +E
Sbjct: 691 KSLKNELRSLEDLLEELRRQLEE--LERQLEELKRELAALEEELEQLQSRLEELEEELEE 748
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+E + + +E+ EE+ + + + +EI+E+
Sbjct: 749 LEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784
Score = 37.8 bits (88), Expect = 0.063
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ-EDEKEGNEEVMRE- 1476
+ L + ++EE K+ EE + EE + E +EE + E E + E
Sbjct: 343 ETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEEL 402
Query: 1477 ----DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+ +E +R +ED +E+ KE ++ E++E+
Sbjct: 403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEEL 444
Score = 37.0 bits (86), Expect = 0.11
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM---R 1475
E++R L E E+++EE K+ ++ E+ Q EE E+E E+E E +E +
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764
Query: 1476 EDENKENDDRK--KGEIEDKEEDGKENKSSETSADQEIDEV 1514
E+ + K EIE+ EE + + ++E++E
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEA 805
Score = 36.6 bits (85), Expect = 0.12
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
L ++K E E+ EE + EEE EE Q+ EE EKE I+E + E E
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEEL----EELQEELEEAEKE--IEELKSELEELREEL 283
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+E +E K EIE+ E + + + E++E+ E
Sbjct: 284 EELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326
Score = 36.2 bits (84), Expect = 0.19
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
R ++ L E +++EE ++ EE + E +E + + ++E E+E E +E
Sbjct: 698 RSLEDLLEELRRQLEELERQLEE--LKRELAALEEELEQLQSRLEELEEELEELEEELEE 755
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
+E + + E+E EE + K +++ +
Sbjct: 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794
Score = 34.7 bits (80), Expect = 0.45
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 1396 GTILEK-HRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKE 1454
G ++E G + A RE+K L E+ ++E + + EE +K + E +
Sbjct: 643 GDLVEPSGSITGGSRNKRSSLAQKRELK-ELEEELAELEAQLEKLEEELKSLKNELR--- 698
Query: 1455 ETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E+ ++E ++ E + +E K + E+E + +E + ++E++E
Sbjct: 699 --SLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755
Score = 34.3 bits (79), Expect = 0.70
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQK---GKEETEKEEPIQEDEKEGNE 1471
E L E+K EKE+ EE ++ E E + EE +K EE E + E E E
Sbjct: 873 EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELE 932
Query: 1472 EVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVM 1515
E + E+ + + EIE EE+ + A +E +EV
Sbjct: 933 EELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVE 976
Score = 33.5 bits (77), Expect = 1.0
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 1425 LAEKEKKVEEKKKA-----EEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
L E+ ++++EK +A EE E EQ E E +E ++E EE+ E
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEA 380
Query: 1480 -KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+E + E+ + + +E K S ++ ++ + E
Sbjct: 381 LREELAELEAELAEIRNELEELKREIESLEERLERLSERLE 421
Score = 33.1 bits (76), Expect = 1.6
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG------NEE 1472
RE L K +++E + EE + EEE + ETE E I+ E+E N
Sbjct: 911 RERLEELEAKLERLEVELPELEEEL---EEEYEDTLETELEREIERLEEEIEALGPVNLR 967
Query: 1473 VMRE-DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVM 1515
+ E +E +E + K + ED EE ++ D+E E
Sbjct: 968 AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERF 1011
Score = 32.8 bits (75), Expect = 1.8
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR--E 1476
E L E+ +++EEK++A +E +++ EEE EE E+ E E E E+ E
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEE---LEEAERRLDALERELESLEQRRERLE 827
Query: 1477 DENKENDDRK---KGEIEDKEEDGKENKSSETSADQEIDE 1513
E +E ++ + ++++ EE+ +E + +E++E
Sbjct: 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867
Score = 32.4 bits (74), Expect = 2.2
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
E++ + E E+K++E ++ EE +++ EE K + E + E + +++ E +E+
Sbjct: 831 EELEEEIEELEEKLDELEEELEE-LEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889
Query: 1479 NKENDD--RKKGEIEDKEEDGKENKSSETSADQEIDEVM 1515
+E + + E++++ E + E A E EV
Sbjct: 890 EEELRELESELAELKEEIEK-LRERLEELEAKLERLEVE 927
Score = 32.4 bits (74), Expect = 2.4
Identities = 21/95 (22%), Positives = 48/95 (50%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E + AE+ ++++ + + E ++ + ++ KE E EE + E+E E +E
Sbjct: 206 ERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA 265
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
++ + K E+E+ E+ +E + +EI+E+
Sbjct: 266 EKEIEELKSELEELREELEELQEELLELKEEIEEL 300
Score = 32.4 bits (74), Expect = 2.8
Identities = 20/98 (20%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
AL E+++ L + +++EE+ + EE +++ +E + EE ++ E+ +
Sbjct: 726 AALEEELEQ-LQSRLEELEEELEELEEELEELQERLEELEEE-----LESLEEALAKLKE 779
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEID 1512
+E +E + E+E+ EE+ +E + + ++E++
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817
Score = 31.2 bits (71), Expect = 5.3
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 1415 EALGR--EIKRALAEKEKKVEEKKKA---EEESVKQTEEEQKGKEE-TEKEEPIQEDEKE 1468
EA + + L E +EE +K E ++ E Q+ K E E E + + +
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLK 235
Query: 1469 GNEEVMREDENKENDDRK-----KGEIEDKEEDGKENKSSETSADQEIDEV 1514
+ + E E + + + + E+E+ E++ +E KS +E++E+
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286
Score = 30.8 bits (70), Expect = 6.5
Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEE-----SVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E+++ L E ++++EE + +EE + E+E+ +E E E + E ++E +
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRE 912
Query: 1475 REDENKENDDRKKGEIEDKEED--GKENKSSETSADQEIDE 1513
R +E + +R + E+ + EE+ + + ET ++EI+
Sbjct: 913 RLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953
Score = 30.5 bits (69), Expect = 9.6
Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKG-----KEETEKEEPIQEDEKEG 1469
+AL RE++ +E+ +E ++ EEE +++ EE+ +E ++ E ++E+ +E
Sbjct: 810 DALERELESLEQRRERLEQEIEELEEE-IEELEEKLDELEEELEELEKELEELKEELEEL 868
Query: 1470 NEEVMR-EDENKENDDRKK---GEIEDKEEDGKENKSSETSADQEIDE 1513
E EDE KE ++ K+ E+ + E + E K + ++E
Sbjct: 869 EAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal DNA
during the process of transcription.
Length = 193
Score = 39.7 bits (93), Expect = 0.004
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 1401 KHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
+ G P LG E + + E KVE++ + EEE K E+K K+E +KE+
Sbjct: 112 RFFPTGYGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKK----EKKKKKEVKKEK 167
Query: 1461 PIQEDEKEGNEEVMREDENKENDDRKK 1487
++D+K E+++ +K+ +KK
Sbjct: 168 KEKKDKK---EKMVEPKGSKKKKKKKK 191
Score = 30.5 bits (69), Expect = 4.4
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
+ +E E+ ++ + KE +EE + EK+ +EV + E KE D+K+ +E
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEE--KKEKKKKKEV--KKEKKEKKDKKEKMVEP 180
Query: 1493 KEEDGKENKSSET 1505
K K+ K +
Sbjct: 181 KGSKKKKKKKKKK 193
>gnl|CDD|236696 PRK10458, PRK10458, DNA cytosine methylase; Provisional.
Length = 467
Score = 40.8 bits (96), Expect = 0.005
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 42/179 (23%)
Query: 888 RCLEVFAGAGGLSRGLDKSG---VARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNK 941
R +++FAG GG+ RG + G V S W + A +K N +P F +D
Sbjct: 90 RFIDLFAGIGGIRRGFEAIGGQCVFTSEW----NKHAVRTYKANWYCDPATHRFNEDIRD 145
Query: 942 I----LQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQRQYSAFKNSL 995
I + V D E + +Q +P + ++L G PCQ FS G+++ KNSL
Sbjct: 146 ITLSHKEGVSDEEAAEHIRQHIP---DHDVLLAGFPCQPFSLAGVSK---------KNSL 193
Query: 996 IVSYLSYCDYY--------------RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGY 1040
++ C+ RP F+LENV+N + ++ M+ L ++GY
Sbjct: 194 GRAHGFECETQGTLFFDVARIIDAKRPAIFVLENVKNLKSHDKGKTFRIIMQTLDELGY 252
Score = 37.0 bits (86), Expect = 0.071
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 1358 NPEPMGKQGRVLHPEQHRVVSVRECARSQGF--PDHHKFHGTI--LEKHRQVGNAVPPPM 1413
+PE + R L P RECAR GF P KF + + +RQ GN+V P+
Sbjct: 393 DPENQQHRPRRLTP--------RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPV 444
Query: 1414 GEALGR----EIKRALAEKEKK 1431
A+ + +IK+A+A ++++
Sbjct: 445 FAAVAKLLEPKIKQAVALRQQE 466
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein (DUF2052).
This entry is of sequences of two conserved domains
separated by a region of low complexity, spanning some
200 residues. The function is unknown.
Length = 178
Score = 38.9 bits (91), Expect = 0.006
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQT-------EEEQKGKEETEKEEPIQEDEKEGNEEV 1473
I + L E+E++ + K E + EE + E ++EE E E+E + E
Sbjct: 34 IGQFLTEEEREARGRAKRWSEGLSGVLESSLDREEARLELLEQQEEEESAE-EEEEDPEE 92
Query: 1474 MREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E+E +E GE E EEDG T ++E
Sbjct: 93 ENEEEEEEYQRGPFGEEE--EEDGDSYDELPTPEERE 127
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with the
process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli synthesizes
cobalamin only when it is supplied with the precursor
cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with a
MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The other
two subunits are the P. denitrificans CobS (TIGR01650)
and CobN (pfam02514 CobN/Magnesium Chelatase) proteins.
To avoid potential confusion with the nonhomologous
Salmonella typhimurium/E.coli cobT gene product, the P.
denitrificans gene symbol is not used in the name of this
model [Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 600
Score = 40.7 bits (95), Expect = 0.007
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 1419 REIKRALAEKEK-----KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
RE+ R++ E+ + E+++ +++ + E+E++G+ E E +E E E +
Sbjct: 191 REMLRSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRE 250
Query: 1474 MREDENKENDDRKKGEIEDKEED------GKENKSSETSADQEID-EVMTA--DETKD 1522
E + + ++ ++D G TS E D +V T DET D
Sbjct: 251 SESGEEEMVQSDQDDLPDESDDDSETPGEGARPARPFTSTGGEPDYKVFTTAFDETVD 308
Score = 38.8 bits (90), Expect = 0.028
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 21/132 (15%)
Query: 1412 PMGEALGREIKRAL--------AEK-----EKKVEEKKKAEEESVKQTEEEQKGKEETEK 1458
PM EAL ++ L A+ +E K + + + ++Q+ +
Sbjct: 132 PMAEALALMVREKLTGDAPPHSAKALVDLWRNDIEAKAGKDLDRLSAAIDDQQAFARVVR 191
Query: 1459 E--------EPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E E + +D + +EE +D+ EN+ ++GE E + ++G + SE + +
Sbjct: 192 EMLRSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRES 251
Query: 1511 IDEVMTADETKD 1522
++
Sbjct: 252 ESGEEEMVQSDQ 263
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 40.4 bits (95), Expect = 0.007
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
++ K A K KKK ++E + E+K + + + +D N+ +D+
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDD 136
Query: 1479 NKENDDRKKGEIEDKEEDGKENKS---SETSADQEIDEVMTADETKD 1522
+ ++D +D +++ + D+E E ++ D
Sbjct: 137 DDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Score = 37.7 bits (88), Expect = 0.051
Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE----GNEEVMR 1475
+ + + EKK K + VK + + ++ + ++ D+ + ++E
Sbjct: 98 DELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDD 157
Query: 1476 EDENKENDDRKKGE-IEDKEEDGKENKSSETSADQEIDE------VMTADETKD 1522
ED++ ++ D + E E KE + + + + + T D
Sbjct: 158 EDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATAD 211
Score = 32.3 bits (74), Expect = 2.5
Identities = 14/110 (12%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ + + + ++ +++ + + + +E + E+ +D + +EE
Sbjct: 114 KDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173
Query: 1475 REDENKENDDRKKGEIED--KEEDGKENKSSETSADQEIDEVMTADETKD 1522
E ++ D ++ E + K ++ +A TAD K
Sbjct: 174 EAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTA--------TADPVKA 215
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 40.8 bits (96), Expect = 0.007
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 1415 EALGREIKRALAEKEK---KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE 1471
E L REI+ ++K + E K+ E+ + EE K ET E +D +E E
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE---LKDYREKLE 395
Query: 1472 EVMRE-DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
++ RE +E K DR + E++ E+ + ++ + +I+E+ E K
Sbjct: 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
Score = 38.1 bits (89), Expect = 0.046
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE-D 1477
++R++AEKE E + AEE K E K E E+ E E+E++ +++ E
Sbjct: 304 ASLERSIAEKE---RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA 360
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
E KE + + E+E+ +++ E + ++++++
Sbjct: 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397
Score = 35.4 bits (82), Expect = 0.30
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EA REI++ L + E +K +E +Q + ++ + EKE +KE EE +
Sbjct: 811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
Query: 1475 REDENKENDDRK-----KGEIEDKEEDGKENKSSETSADQEIDE 1513
E E D K E ++ E +E + + +I++
Sbjct: 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
Score = 34.7 bits (80), Expect = 0.53
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1415 EALGREIKRALAEK---EKKVEEKKKAEEESVKQTEEEQK------GKEETEKEEPIQED 1465
E L RE+ +E E +++E + ++ ++ E +K +EE KE E+
Sbjct: 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER--LEE 741
Query: 1466 EKEGNEEVMREDENKEND-DRKKGEIEDKEED 1496
+E + +E EN +++ + IE+ EED
Sbjct: 742 LEEDLSSLEQEIENVKSELKELEARIEELEED 773
Score = 34.3 bits (79), Expect = 0.71
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 1419 REIKRALAEKE---KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN----- 1470
+++ + + K++E + + EE + + EE E I E + E +
Sbjct: 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEE 806
Query: 1471 ----EEVMREDENKENDDRKKGEIEDKEEDGKEN-----KSSETSADQEIDE 1513
E +RE E K N + E +KE + K S ++EI+
Sbjct: 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
Score = 33.9 bits (78), Expect = 0.79
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 1419 REIKRALAEKEKKV-----------EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK 1467
E++ L E E + +E+ + E + + + ++ + + EK+ + K
Sbjct: 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
Query: 1468 EGNEEVMREDENKENDDRKKGEIEDKEED 1496
E + E+E E +D K + E EE+
Sbjct: 924 AKLEAL--EEELSEIEDPKGEDEEIPEEE 950
Score = 33.9 bits (78), Expect = 0.92
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 1415 EALGREIKRALAEK--EKKVEEKKKAEEESVKQ----TEEEQKGKEETEKEEPIQEDEKE 1468
EAL +++ L+ + E K EEE + E EQK T ++E E E +
Sbjct: 779 EALN-DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE-YLEKEIQ 836
Query: 1469 GNEEVMREDENKENDDRK-----KGEIEDKEEDGKE 1499
+E + + + K G+ E+ EE+ +E
Sbjct: 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
Score = 33.5 bits (77), Expect = 1.1
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ L E E E E EE + E + K+ EK E ++ + E E+
Sbjct: 353 DKLTEEYAELKEELEDLRAE---LEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
Query: 1475 REDENKENDDRK----KGEIEDKEEDGKENKSSETSADQEIDE 1513
R E + + I E E + + EI +
Sbjct: 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
Score = 33.1 bits (76), Expect = 1.5
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 1423 RALAEKEKKVE-----EKKKAEEESVKQTEEEQKGKEE--TEKEEPIQEDEKEGNE-EVM 1474
+AL +++++ E ++K+A E + E + EE + E I E EK E E +
Sbjct: 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E+ NK+ D + E +E E ++ S ++ I E
Sbjct: 274 LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAE 312
Score = 31.6 bits (72), Expect = 4.5
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EA RE++R + E E ++E+K+K E +K E + E +E E+P EDE+ EE +
Sbjct: 895 EAQLRELERKIEELEAQIEKKRKRLSE-LKAKLEALEE-ELSEIEDPKGEDEEI-PEEEL 951
Query: 1475 REDENKENDDRKKGEIEDKEE 1495
++ + R + EI E
Sbjct: 952 SLEDVQAELQRVEEEIRALEP 972
Score = 31.2 bits (71), Expect = 6.2
Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 1422 KRALAEKEKKVEEKK---KAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
R+ + +++ E+ K E S++ + E + + + ++ E+ +E E
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIE-NRLDELSQELSDASRK-IGEIEKEIE 726
Query: 1479 NKENDDRK-KGEIEDKEEDGKENKSSETSADQEIDEV 1514
E ++ K K +E+ EED + + E+ E+
Sbjct: 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
>gnl|CDD|240068 cd04717, BAH_polybromo, BAH, or Bromo Adjacent Homology domain, as
present in polybromo and yeast RSC1/2. The human
polybromo protein (BAF180) is a component of the SWI/SNF
chromatin-remodeling complex PBAF. It is thought that
polybromo participates in transcriptional regulation.
Saccharomyces cerevisiae RSC1 and RSC2 are part of the
15-subunit nucleosome remodeling RSC complex. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 121
Score = 37.6 bits (88), Expect = 0.008
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 410 GEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEE--LS 467
G + +VGD V V + + + P + ++ +++D + WF R +ET E
Sbjct: 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDG--EKFFFGCWFYRPEETFHEPTRKF 58
Query: 468 DPQELFLLEACDDVSLNAVANLCQVKHF 495
E+F + V + + C V
Sbjct: 59 YKNEVFKSPLYETVPVEEIVGKCAVMDV 86
Score = 36.8 bits (86), Expect = 0.016
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 633 KLSDYMKGSNAYTPAPFGIGYIVAIFK-KKGKKNVSASDVFLTVKKFYRPENT-HRSVEF 690
++ D + +N P+ I I ++K + G+K F FYRPE T H
Sbjct: 5 RVGDCVYVANPEDPSKPIIFRIERLWKDEDGEK-------FFFGCWFYRPEETFHEPTRK 57
Query: 691 TYQLDLNKLYWSDEEEQVSLSDVQGKCFV 719
Y+ N+++ S E V + ++ GKC V
Sbjct: 58 FYK---NEVFKSPLYETVPVEEIVGKCAV 83
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 40.3 bits (94), Expect = 0.008
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E+E+ VEE+++ EEE ++ +E ++ + E E+EE E + EE+ E + +
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEP 499
Query: 1487 KGEIEDKEEDGKENKS-SETSADQ 1509
+ ED E E S S Q
Sbjct: 500 E---EDAERRNSEMAGISRMSEGQ 520
Score = 39.5 bits (92), Expect = 0.017
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
R + A ++E EEE+ +EE E+EE +E+E+E EE ED
Sbjct: 416 SRSSDPSKASSTSGESPSMASQES-----EEEESVEEEEEEEEEEEEEEQESEEE-EGED 469
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E +E + E++ E E +++
Sbjct: 470 EEEEEEVEADNGSEEEMEGSSEGDGDGEEPEED 502
Score = 38.7 bits (90), Expect = 0.024
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 1426 AEKEKKVEE----KKKAEEESVKQTEEEQKGKEETEK-EEPIQEDEKEGNEEVMREDENK 1480
A K+ EE K++ E + K + E P ++ EE + E+E +
Sbjct: 392 AMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEE 451
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTAD 1518
E ++ ++ + ++EE E + E AD +E M
Sbjct: 452 EEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGS 489
Score = 35.7 bits (82), Expect = 0.22
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK-ENDDRKKGEIE 1491
E +++ E ++ EEE++ +E+ +EE +++E+E E E + E G+ E
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGE 497
Query: 1492 DKEEDGKENKSS 1503
+ EED + S
Sbjct: 498 EPEEDAERRNSE 509
Score = 33.7 bits (77), Expect = 0.93
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 1434 EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDK 1493
++ + EE ++ EEE++ +EE ++ E + +++E EEV E +N ++ + +
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEV--EADNGSEEEMEGS--SEG 492
Query: 1494 EEDGKENKSSETSADQEIDEVMTADE 1519
+ DG+E + + E+ + E
Sbjct: 493 DGDGEEPEEDAERRNSEMAGISRMSE 518
Score = 31.0 bits (70), Expect = 5.6
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK-----EGNEE 1472
+E + + +E++ EE+++ EEE + EE + +EE E E +E+ EG+ +
Sbjct: 436 SQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGD 495
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSAD 1508
+E+ E + + I E + SS
Sbjct: 496 GEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPES 531
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher plants
contain two giant open reading frames designated ycf1 and
ycf2. Although the function of Ycf1 is unknown, it is
known to be an essential gene.
Length = 832
Score = 40.4 bits (95), Expect = 0.009
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 1435 KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKE 1494
KK E ++ EEE + ET E + E+EG+ E ++E +D K E DK
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 1495 EDGKENKSSE 1504
E KE K E
Sbjct: 284 EILKEKKDEE 293
Score = 35.0 bits (81), Expect = 0.34
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKK 1487
KE E+++ E + +T E KG ++ E+E +ED +E E E+ + +
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQ-EQEGSTEEDPSLFSE----EKEDPDKTEDLD 281
Query: 1488 GEIEDKEEDGKE 1499
KE+ +E
Sbjct: 282 KLEILKEKKDEE 293
Score = 33.1 bits (76), Expect = 1.5
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E E++ EE E + + +Q+ + TE++ + +EKE ++ D+ + ++K
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKK 290
Query: 1487 KGEI 1490
E+
Sbjct: 291 DEEL 294
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit
G; Reviewed.
Length = 197
Score = 38.9 bits (90), Expect = 0.010
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
R +K+ +K+K + +++ E++ ++ EE ++ E +EE I E RED+
Sbjct: 108 RSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDE----------REDQ 157
Query: 1479 NKENDDRKKGEIEDKEEDGK----ENKSSETSADQEIDE 1513
++ +R++ IE++ +D + E SET +D + E
Sbjct: 158 EEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTE 196
Score = 37.0 bits (85), Expect = 0.041
Identities = 22/88 (25%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
K++L +++++E+ ++ EE ++ E E++ +E+ ++ E +E E+E E+ + E +
Sbjct: 118 KKSLIIRQEQIEKARQEREELEERMEWERR-EEKIDEREDQEEQEREREEQTIEE----Q 172
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQ 1509
+DD E E E+D E +S + ++
Sbjct: 173 SDD---SEHEIIEQDESETESDDDKTEK 197
Score = 30.0 bits (67), Expect = 7.3
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
++ + +++ +K+ + +E+ EK +E+ +E E RE++ E +D+ E+
Sbjct: 105 DQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQ-----EE 159
Query: 1493 KEEDGKENKSSETSADQEIDEVMTADETK 1521
+E + +E E S D E E++ DE++
Sbjct: 160 QEREREEQTIEEQSDDSE-HEIIEQDESE 187
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 40.0 bits (93), Expect = 0.010
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Query: 1380 RECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAE 1439
RE R + F + LE+ ++ R ++ + + VEE++K E
Sbjct: 66 REERRDERFSE-------ALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEE 118
Query: 1440 EESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKE 1499
++ EE +G ++E++ ++ E+ EE E E +E R E + E +
Sbjct: 119 SREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHK 178
Query: 1500 NKSSETSADQEIDEVMTADETKD 1522
K +E + + E + K+
Sbjct: 179 LKHTENTFSRGGAEGAQVEAGKE 201
Score = 38.9 bits (90), Expect = 0.018
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 1401 KHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
K + N E A E K+ E+ K+ ++E+ + EE +K +EE K
Sbjct: 178 KLKHTENTFSRGGAEG-------AQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVL 230
Query: 1461 PIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSS 1503
+E+++ EE R+ +E R K EIE + + E +
Sbjct: 231 E-EEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQK 272
Score = 37.3 bits (86), Expect = 0.054
Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 8/147 (5%)
Query: 1360 EPMGKQGRVLHPEQH-----RVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMG 1414
+ Q PE + S+ E T +
Sbjct: 143 DAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEF 202
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E L ++ + A E E E KKK EE EEEQ+ K+E + +E+EK +E +
Sbjct: 203 EKLKQKQQEAALELE---ELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEI 259
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENK 1501
+ + R+K + ED K K
Sbjct: 260 ERRRAEAAEKRQKVPEDGLSEDKKPFK 286
Score = 33.5 bits (76), Expect = 0.91
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ RE + + E E + ++K + ++ ++E+K E E+E+P + +E N E M
Sbjct: 116 KEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFM 175
Query: 1475 REDENKENDDRKKGEIEDKE-EDGKEN---KSSETSADQEIDEVMTADETK 1521
+ +G E + E GKE K + A E++E+ E +
Sbjct: 176 THKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREER 226
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 40.2 bits (94), Expect = 0.010
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE-EPIQEDEKEGNEEVMREDENKEND 1483
L+ EK++E+K + E+ +K+ E+ K+E E+E E ++E E+ E+ +E +
Sbjct: 520 LSALEKELEQKNEHLEKLLKEQEKL---KKELEQEMEELKERERNKKLELEKEAQEALKA 576
Query: 1484 DRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+K E+E + KE K + + I++++ ETK
Sbjct: 577 LKK--EVESIIRELKEKKIHKAKEIKSIEDLVKLKETK 612
Score = 33.3 bits (76), Expect = 1.2
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
AL +E+++ EK ++E++K ++E ++ EE ++ + + E EKE E +
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLEL-----EKEAQEALK 575
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+ E+ R+ E K KE KS E + +
Sbjct: 576 ALKKEVESIIRELKEK--KIHKAKEIKSIEDLVKLKETKQ 613
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 37.0 bits (86), Expect = 0.010
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ EI+ A E E+ ++E ++ E +++ EEE E +E ++E +E
Sbjct: 17 ISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEA----EKLAQEILEEAREEA----- 67
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVM 1515
E+E +E + E E K E +A E ++
Sbjct: 68 -EEEAEEILAEAEKEASAILSKAAEGKVVE-AALSEFLAIL 106
Score = 29.7 bits (67), Expect = 3.4
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 1453 KEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEID 1512
K E +E I+E ++E + + +E + + ++ E E ++ + + + A++E +
Sbjct: 14 KAEISADEEIEEAKEEAEQII-KEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAE 72
Query: 1513 EVMTADETKD 1522
E++ A+ K+
Sbjct: 73 EIL-AEAEKE 81
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of the
RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 39.7 bits (93), Expect = 0.011
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 1399 LEKHRQVGNAVPPPMGEALGREIK---RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE 1455
L + R V + + P + E ++ R + KE K+ +K++A + + E + E+
Sbjct: 319 LRRRR-VNDVIRPLVREHNNDQLNVKLRNPSTKESKMRDKRRARLDPIDFEEVD----ED 373
Query: 1456 TEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
++EE + DE E E E+E ++ + E E+K+ + SA E
Sbjct: 374 EDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 30.1 bits (68), Expect = 9.7
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 1446 TEEEQKGKEETEKE-EPIQEDEKEGNEEVMREDENK-ENDDRKKGEIEDKEEDGK---EN 1500
+ +E K +++ +PI +E + ++E + +D+ ++ E ED EE+G E+
Sbjct: 348 STKESKMRDKRRARLDPIDFEE----VDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSRED 403
Query: 1501 KSSETSADQEIDEVMTADE 1519
SSE+S+D D AD+
Sbjct: 404 GSSESSSDVGSDSESKADK 422
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 38.5 bits (90), Expect = 0.011
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE-DENKENDDR 1485
+KE+K EE E E +++EEE+ +EE +EE E+E++ E+ + +E K+ R
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEA-EEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Query: 1486 KKGEIE 1491
+ E E
Sbjct: 62 AQAEFE 67
Score = 35.8 bits (83), Expect = 0.092
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 1442 SVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENK 1501
S K+ + E+ EETE+ E +E+E E E E + + ++ EI + E +E K
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEP-----EEENELEEEQQEIAELEAQLEELK 56
Query: 1502 SSETSADQEID 1512
A E +
Sbjct: 57 DKYLRAQAEFE 67
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 38.0 bits (89), Expect = 0.011
Identities = 16/73 (21%), Positives = 41/73 (56%), Gaps = 12/73 (16%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
+++ L +K+ EE+++ E E V++ +EE++ E EKE ++ ++ +
Sbjct: 90 VRKLLGLDKKEKEEEEEEEVE-VEELDEEEQIDELLEKE-----------LAKLKREKRR 137
Query: 1481 ENDDRKKGEIEDK 1493
EN+ ++K ++++
Sbjct: 138 ENERKQKEILKEQ 150
Score = 32.3 bits (74), Expect = 0.91
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ LG + K E+E++VE ++ EEE + + E++ K + EK + +KE +E M
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQM 151
Query: 1475 R 1475
+
Sbjct: 152 K 152
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein. This
family represents Cwf15/Cwc15 (from Schizosaccharomyces
pombe and Saccharomyces cerevisiae respectively) and
their homologues. The function of these proteins is
unknown, but they form part of the spliceosome and are
thus thought to be involved in mRNA splicing.
Length = 241
Score = 38.9 bits (91), Expect = 0.013
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 1401 KHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
K+RQ G E R+++ L E E+ + KK+ K E+ +
Sbjct: 42 KYRQPGQGTE---DELRKRDLRAELEEAERAHKSKKEN-----KLAIEDADKSTNLDASN 93
Query: 1461 PIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADET 1520
ED+ E +E + E + D + ++ SS+ +D + E DET
Sbjct: 94 EGDEDDDEEDEIKRKRIEEDARN-----SDADDSDSSSDSDSSDDDSDDDDSE----DET 144
Query: 1521 K 1521
Sbjct: 145 A 145
Score = 33.2 bits (76), Expect = 0.94
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 1415 EALGRE---IKRALAEKEKKVEEKKKAEEESVKQTE 1447
AL RE IK+ AE++++ EE+K AEEE ++ E
Sbjct: 145 AALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 39.6 bits (92), Expect = 0.013
Identities = 22/155 (14%), Positives = 35/155 (22%), Gaps = 16/155 (10%)
Query: 1373 QHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPP-------------PMGEALGR 1419
Q R H K HG E+ + P A+
Sbjct: 4 QRRKAKRSRHTLRSSCRGHCKRHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAE 63
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ-EDEKEGNEEVMREDE 1478
+ R + EE + E+E Q G E P +E + E+
Sbjct: 64 QGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENT 123
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ + + A E
Sbjct: 124 SGSSPESPASHSPPPSPPSHPGPHEP--APPESHN 156
Score = 34.2 bits (78), Expect = 0.55
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 9/100 (9%)
Query: 1420 EIKRALAEKEKKVEEKKKAE-------EESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
E AE+ + E++++ + ESV G E E+ + E
Sbjct: 70 ESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE 129
Query: 1473 VMREDENKENDDRKKGEIED--KEEDGKENKSSETSADQE 1510
+ G E E +S Q
Sbjct: 130 SPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQP 169
Score = 31.5 bits (71), Expect = 4.2
Identities = 8/93 (8%), Positives = 16/93 (17%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E + +Q ++ EE E D
Sbjct: 132 ASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPG 191
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ E + + + A
Sbjct: 192 PPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPS 224
Score = 30.3 bits (68), Expect = 8.6
Identities = 10/73 (13%), Positives = 24/73 (32%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E EE + E + + + T P ++ G + + + ++
Sbjct: 170 SHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQ 229
Query: 1487 KGEIEDKEEDGKE 1499
E ED+ + +
Sbjct: 230 AVEHEDEPTEPER 242
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1 protein
homologues. SDA1 is a Saccharomyces cerevisiae protein
which is involved in the control of the actin
cytoskeleton. The protein is essential for cell viability
and is localised in the nucleus.
Length = 317
Score = 38.9 bits (91), Expect = 0.017
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
L EK K+ E KKK E+ ++ +++ +EE E EE D++ +V + E + +D
Sbjct: 74 LLEKWKEEERKKKEAEQGLESDDDD-DEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDS 132
Query: 1485 RKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
ED+EE + K ++ +D+E+ E + ++
Sbjct: 133 ------EDEEEKDEAAKKAKEDSDEELSEEDEEEAAEE 164
Score = 35.4 bits (82), Expect = 0.18
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQED--------EKEGNEEVMRE 1476
L + +++ +KK+AE+ +++++ +EE E EE D E + E
Sbjct: 75 LEKWKEEERKKKEAEQGL--ESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDS 132
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
++ +E D+ K ED +E+ E E + ++E +
Sbjct: 133 EDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEA 169
Score = 35.0 bits (81), Expect = 0.28
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 1426 AEKEKKVEEKKKAEEESVK----------QTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
A + EKK EE V + +EE++ K+E E+ +D+ + EE
Sbjct: 48 ASMGLEAGEKKGYGEEEVVDGIPGLELLEKWKEEERKKKEAEQGLE-SDDDDDEEEEWEV 106
Query: 1476 EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E++ +D+ GE D E D + S S D+E +
Sbjct: 107 EEDEDSDDE---GEWIDVESDKEIE--SSDSEDEEEKD 139
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 36.4 bits (84), Expect = 0.017
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E++ +EI E+E +++E K EE K+TEEE E +E EK+ E +
Sbjct: 20 ESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAVEII- 78
Query: 1475 REDENKENDDRKKGEIEDKE 1494
++ K+ K +I + E
Sbjct: 79 --NKAKQEASLIKLKISEDE 96
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and 214
amino acids in length.
Length = 125
Score = 36.9 bits (86), Expect = 0.018
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ + + I + A+ EKK EEKK E+ K + EE+ E + E+ ++E E E +
Sbjct: 11 KEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARREL 70
Query: 1475 REDENK 1480
+ + K
Sbjct: 71 KAEAKK 76
Score = 30.3 bits (69), Expect = 3.1
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK--EGNEEVMREDENKENDDRKK 1487
+ EEK ++E V + ++K K E ++EE E EK + + E E E + +K
Sbjct: 1 EPEEEKTFTDKE-VDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAE---EKAEYELEKLEK 56
Query: 1488 GEIEDKEEDGKENK 1501
E+E+ E + +
Sbjct: 57 -ELEELEAELARRE 69
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 39.0 bits (91), Expect = 0.019
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 1455 ETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENK 1501
E EKE P +E+E+E E + +E K E D+EE+ +E K
Sbjct: 30 EVEKEVPDEEEEEEK-----EEKKEEEEKTTDKEEEVDEEEEKEEKK 71
Score = 35.1 bits (81), Expect = 0.34
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN------EEVMREDE 1478
EKE + E + EEE ++ +EE++ + E+E +E+++E +E E E
Sbjct: 26 WVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Query: 1479 --NKEND--DRKKGEIEDKE 1494
NK R ++ +E
Sbjct: 86 LLNKTKPIWTRNPKDVTKEE 105
Score = 32.0 bits (73), Expect = 2.9
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 1437 KAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEED 1496
K E+ V EEE++ +E+ E+EE + E EEV E+E +E + K E E
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKE----EEVDEEEEKEEKKKKTKKVKETTTEW 84
Query: 1497 GKENK 1501
NK
Sbjct: 85 ELLNK 89
Score = 31.7 bits (72), Expect = 4.0
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 1448 EEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSA 1507
E++ KE ++EE +++EK+ EE D+ +E D+ + E +E+ K K ET+
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEE-KTTDKEEEVDEEE----EKEEKKKKTKKVKETTT 82
Query: 1508 DQE 1510
+ E
Sbjct: 83 EWE 85
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit of
transcription factor IIF (TFIIF), which is essential for
accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 39.2 bits (91), Expect = 0.019
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 25/133 (18%)
Query: 1406 GNAVPPPMGEALGREIKRALAEKEKKVEEKKKA-EEESVKQTEEEQK----------GKE 1454
+ L + K+ +K+ K A E +S +E ++ G +
Sbjct: 237 DEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGND 296
Query: 1455 ETEKEE-PIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEE-------------DGKEN 1500
E+E+ E + E + E E + ++ K+ D ++
Sbjct: 297 PEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDS 356
Query: 1501 KSSETSADQEIDE 1513
S + S D +ID
Sbjct: 357 DSGDDSDDSDIDG 369
Score = 36.9 bits (85), Expect = 0.090
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 1447 EEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETS 1506
E++ E K E Q+++ E +EE E+E + KK + +++G + S++
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSG 359
Query: 1507 ADQEIDEVMTAD 1518
D + ++ D
Sbjct: 360 DDSDDSDIDGED 371
Score = 36.5 bits (84), Expect = 0.13
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
+ + E K + E K E EQ E +EE +E+ + + + K K
Sbjct: 294 GNDPEEREDKLSPEIPAKP-EIEQDEDSEESEEEKNEEEGGLSKKG-KKLKKLKG----K 347
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
K ++ + D S+ S D V K
Sbjct: 348 KNGLDKDDSD--SGDDSDDSDIDGEDSVSLVTAKK 380
Score = 36.1 bits (83), Expect = 0.16
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
K A +K+ ++K K + + G +E +E+ I + GN+ RED+
Sbjct: 247 KLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSP 306
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ K EIE E+ + + + + K
Sbjct: 307 -EIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKG 346
Score = 35.7 bits (82), Expect = 0.20
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
RE K + K E+ + EES ++ EE+ G + K+ + +K G ++ +
Sbjct: 299 EREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDK--DDS 356
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEID 1512
++ ++ D + ED K E ++ +D
Sbjct: 357 DSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVD 391
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked with
mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of it
enhances mitochondrial movement. The activity appears to
be mediated through binding the mitochondria to the actin
intermediate filaments (IFs).
Length = 349
Score = 38.7 bits (91), Expect = 0.020
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE--EVMRED 1477
E +R +KEK+ EK++ +++ +++ EEQ ++E +E E+E E E ED
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAED 271
Query: 1478 ENKE 1481
E E
Sbjct: 272 EELE 275
Score = 38.0 bits (89), Expect = 0.032
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK--EEPIQEDEKEGNEE 1472
+ L EI E+ ++ EE+K+ E E + E Q+ K E E+ E +E ++E E
Sbjct: 124 KKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKERE 183
Query: 1473 VMREDENKENDDRKKGEIE 1491
V R +E + ++ E++
Sbjct: 184 VARLRAQQEEAEDEREELD 202
Score = 35.7 bits (83), Expect = 0.20
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKKAEEES---VKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
E + I+R E E + +EK++ +++ + + EE+ ++E EKE +E+ K
Sbjct: 98 REQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELK--I 155
Query: 1471 EEVMRE-DENKENDDRKKGEIEDKEE 1495
E RE E +E + ++ E ++++E
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKE 181
Score = 34.1 bits (79), Expect = 0.52
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE--KEGNEEVMRE 1476
+ + + K+ EE+++ +Q EE +K ++E E EE +QE E E E + E
Sbjct: 53 KALAEEEERERKRKEERREGRAVLQEQIEEREKRRQE-EYEERLQEREQMDEIIERIQEE 111
Query: 1477 DENKENDDRKK 1487
DE + + R+K
Sbjct: 112 DEAEAQEKREK 122
Score = 33.0 bits (76), Expect = 1.4
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1419 REIKRA----LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+E++RA + EKE++++E++ EE ++ E+Q EE E+E E + E
Sbjct: 233 QELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQEN--AEKRRMKRLEHR 290
Query: 1475 RE-----DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
RE +E +E R+ E E++ E+G+ + E I+E
Sbjct: 291 RELEQQIEEKEE---RRAAEREEELEEGERLREEEAERQARIEEE 332
Score = 31.8 bits (73), Expect = 2.5
Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEE--QKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
+ EK++ E+K+ E + EEE + EE E+E +E+ +EG + +++ +E
Sbjct: 26 IEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVL--QEQIEER 83
Query: 1483 DDRKKGEIEDKEEDGKE 1499
+ R++ E E++ ++ ++
Sbjct: 84 EKRRQEEYEERLQEREQ 100
Score = 31.8 bits (73), Expect = 2.6
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE--DEKEGNEEVMRE 1476
E + L E+E+ E ++ +EE + +E+++ +++ +E I E +E+ +E +E
Sbjct: 89 EEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREE--IDEFNEERIERKEEEKE 146
Query: 1477 DENKEN----------DDRKKGEIEDKEEDGKE 1499
E +E +R++ ++ E +E
Sbjct: 147 REREEELKILEYQREKAEREEEREAERRERKEE 179
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 39.0 bits (90), Expect = 0.023
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
EK+K ++ +E+ESV+ EEE G + E+E + E +E N +D ++ D +
Sbjct: 420 EKQKYMDMLDGSEDESVEDNEEEHSG-DANEEELSVDEHVEEHNA----DDSGEQQSDDE 474
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDEVM---TADE 1519
GE + E +E +E + + +++ T DE
Sbjct: 475 SGEHQSVNEIVEEQSVNEHVEEPTVADIVEQETVDE 510
Score = 35.1 bits (80), Expect = 0.35
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKG 1488
E+ VEE ++ EE+V++ EE + + E E I+E+ +E EE + E+ + ++ ++
Sbjct: 1039 EENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEEN 1098
Query: 1489 EIEDKEEDGKENKSSETSADQEIDE 1513
E+ EE+ +EN +E +A++ +E
Sbjct: 1099 VEENVEENAEEN--AEENAEENAEE 1121
Score = 33.2 bits (75), Expect = 1.4
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1427 EKEKKVEEKKKAE-EESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
E E+ EE + EE++++ +EE + E EE I+E+ +E EE + E E ++
Sbjct: 1044 EIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENV 1103
Query: 1486 KKGEIEDKEEDGKENKSSETSADQEIDE 1513
++ E+ EE+ +EN +E D+ +E
Sbjct: 1104 EENAEENAEENAEEN--AEEYDDENPEE 1129
Score = 32.8 bits (74), Expect = 1.9
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE--DENKENDDRK 1486
E+ VEE ++ EE++++ EE + E EE ++E+ +E EE E +EN E D +
Sbjct: 1066 EENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDE 1125
Query: 1487 KGEIEDKEED 1496
E ++E D
Sbjct: 1126 NPEEHNEEYD 1135
Score = 32.5 bits (73), Expect = 2.6
Identities = 21/86 (24%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKG 1488
E+ +EE + +E + EE + + E E I+E+ +E EE + E+ + +++ +
Sbjct: 1012 EENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEE 1071
Query: 1489 EIEDKEEDGKENKSSETSADQEIDEV 1514
E+ EE+ +EN E + ++ ++E+
Sbjct: 1072 IEENIEENIEEN--VEENVEENVEEI 1095
Score = 32.1 bits (72), Expect = 3.1
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 1429 EKKVEE--KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E+ VEE ++ EE + EE + E EE I+E+ +E EE + E+ + +++
Sbjct: 968 EENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENV 1027
Query: 1487 KGEIEDKEEDGKENKSS-ETSADQEIDE 1513
+ E+ EE +EN E +A++ ++E
Sbjct: 1028 EEVEENVEEYDEENVEEIEENAEENVEE 1055
Score = 31.7 bits (71), Expect = 3.7
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 1415 EALGREIKRALAEKEKKVEEK-KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
E + I+ E +++EE ++ EE+V++ EE + E EE ++E+ +E EE
Sbjct: 1055 ENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEEN 1114
Query: 1474 MREDENKENDDRKKGEIEDKEE 1495
E+ + +D+ + E+ +E
Sbjct: 1115 AEENAEEYDDENPEEHNEEYDE 1136
Score = 31.7 bits (71), Expect = 4.6
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 1429 EKKVEEK-KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE-DENKENDDRK 1486
E+ VEE ++ EE+V++ EE + + E E ++E+ +E +EE + E +EN E + +
Sbjct: 996 EENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEE 1055
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDE 1513
E +E D + + E + ++ I+E
Sbjct: 1056 NIEENIEEYDEENVEEIEENIEENIEE 1082
Score = 30.9 bits (69), Expect = 6.3
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE-DENKENDDRKK 1487
E+ E ++ +EE+V++ EE + E EE I+E ++E EE+ +EN E + +
Sbjct: 1028 EEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEEN 1087
Query: 1488 GE--IEDKEEDGKEN--KSSETSADQEIDE 1513
E +E+ EE+ +EN +++E +A++ +E
Sbjct: 1088 VEENVEEIEENVEENVEENAEENAEENAEE 1117
Score = 30.5 bits (68), Expect = 9.5
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1439 EEESVKQTEEEQKGKEETEKE---EPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEE 1495
EE+SV + EE + E+E E ++E + NEE DE+ E + +E++
Sbjct: 486 EEQSVNEHVEEPTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEIS 545
Query: 1496 DGKEN---KSSETSADQEIDEVMTADETK 1521
+E+ +S+ D E + +T
Sbjct: 546 TAEEHIEEPASDVQQDSEAAPTIEIPDTL 574
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 37.5 bits (87), Expect = 0.027
Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 1430 KKVEE---KKKAEEESVKQTEEE---------------QKGKEETEKEEPIQEDEKEGNE 1471
K ++E K+ ESV + ++ +K +K+ + +K+ +
Sbjct: 15 KTLDEIRAHVKSTTESVDKVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEK 74
Query: 1472 EVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
E + E +E D ++ E DK+ D + K T+A+ ++V+ + K
Sbjct: 75 EEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLK 124
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes MND1
from S. cerevisiae. The mnd1 protein forms a complex with
hop2 to promote homologous chromosome pairing and meiotic
double-strand break repair.
Length = 188
Score = 37.2 bits (87), Expect = 0.030
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE---DEKEGNEEVM 1474
++K L + +K++EE K+ E Q E+ +KG+EETE+ + E ++ +++
Sbjct: 64 LNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLK 123
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSS 1503
E E E +D ++ IE +E+ K K +
Sbjct: 124 AELEKYEKNDPER--IEKLKEETKVAKEA 150
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits in
yeasts and in human cells. Twelve of these are akin to
RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34
and Rpc82 form a cluster of enzyme-specific subunits that
contribute to transcription initiation in S.cerevisiae
and H.sapiens. There is evidence that these subunits are
anchored at or near the N-terminal Zn-fold of Rpc1,
itself prolonged by a highly conserved but RNA polymerase
III-specific domain.
Length = 221
Score = 37.4 bits (87), Expect = 0.030
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN--D 1483
EK +E+K K E +EE + EE E+EE ++++ + +++ +D N EN D
Sbjct: 150 DEKLSMLEKKLKELEAEDV--DEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAENYFD 207
Query: 1484 DRKKGEIEDKEEDG 1497
+ GE +D ++D
Sbjct: 208 N---GEDDDYDDDE 218
Score = 36.3 bits (84), Expect = 0.071
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
E+E E+ E++ + E+ ++E ++EE E+E+E +E +D++ ++DD
Sbjct: 145 EEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEE---EEEEEEEDEDFDDDDDDDDDD 199
Score = 35.9 bits (83), Expect = 0.091
Identities = 17/58 (29%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
E+E+ ++EK E+ +K+ E E +E+ + EE +E+E+E +E+ +D++ ++D
Sbjct: 143 TEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE-DEDFDDDDDDDDDD 199
Score = 32.8 bits (75), Expect = 0.97
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 1422 KRALAEKEKKVE---EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+ LA + K + ++ E+ K + E+K KE ED E +E+ E+E
Sbjct: 127 GKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEA------EDVDEEDEKDEEEEE 180
Query: 1479 NKENDDRKKGEIEDKEED 1496
+E +D + +D ++D
Sbjct: 181 EEEEEDEDFDDDDDDDDD 198
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 35.5 bits (82), Expect = 0.030
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 1398 ILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEK--KKAEEESVKQTEEEQKGKEE 1455
I++ ++ + EA ++I R E+ KK+EE+ KKAEEE+ ++ E++K + E
Sbjct: 8 IVKAEKEAEERIEKAKEEA--KKIIRKAKEEAKKIEEEIIKKAEEEA-QKLIEKKKKEGE 64
Query: 1456 TEKEEPIQEDEKEGNEEVMREDENKEN 1482
E ++ ++E EKE E ++ +EN E
Sbjct: 65 EEAKKILEEGEKEIEELKVKAEENFET 91
Score = 32.8 bits (75), Expect = 0.24
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 1420 EIKRALAEKEKKVEEK-KKAEEESVKQTEEEQKGKEETEK--EEPIQEDEKEGNEEVMRE 1476
++ + + + EK+ EE+ +KA+EE+ K K KEE +K EE I++ E+E + +
Sbjct: 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIR---KAKEEAKKIEEEIIKKAEEEAQKLI--- 56
Query: 1477 DENKENDDRKKGEIEDK---EEDGKENKSSETSADQEIDEVMTA 1517
E K +K+GE E K EE KE + + A++ + ++
Sbjct: 57 -EKK----KKEGEEEAKKILEEGEKEIEELKVKAEENFETAVSE 95
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit.
This is a family of proteins which are subunits of the
eukaryotic translation initiation factor 3 (eIF3). In
yeast it is called Hcr1. The Saccharomyces cerevisiae
protein eIF3j (HCR1) has been shown to be required for
processing of 20S pre-rRNA and binds to 18S rRNA and eIF3
subunits Rpg1p and Prt1p.
Length = 242
Score = 37.7 bits (88), Expect = 0.030
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
E E+K EEK K ++ + + K +E+ + + +E EE EDE E
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRL 99
Query: 1486 KKGEIE 1491
+K + E
Sbjct: 100 RKLQEE 105
Score = 31.9 bits (73), Expect = 2.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQED-EKE 1468
+ K A K KK K K EE+ + E+E+KG E E++ P E EK
Sbjct: 49 KAKVAAKAKAKK-ALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
Score = 30.8 bits (70), Expect = 4.8
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 1400 EKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE 1459
EK + + K A+ E+K + K++ EE+ +++ EE+ E EK
Sbjct: 44 EKEEEKAKVAAKA------KAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 36.6 bits (85), Expect = 0.034
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 1421 IKRALAEKEKKV--------EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
IK + ++ ++ E++KKA E +K E + KEE +K I E+ K E
Sbjct: 30 IKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKK---IVEEYKSKAEN 86
Query: 1473 VMRE---DENKEND---DRKKGEIEDKEEDGKE 1499
V E + ++E D +R K E + ++E +
Sbjct: 87 VYEEIVKEAHEEADLIIERAKLEAQREKEKAEY 119
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together with
Snu17p and a newly identified factor, Pml1p/Ylr016c, form
a novel trimeric complex. called The RES complex,
pre-mRNA retention and splicing complex. Subunits of this
complex are not essential for viability of yeasts but
they are required for efficient splicing in vitro and in
vivo. Furthermore, inactivation of this complex causes
pre-mRNA leakage from the nucleus. Bud13 contains a
unique, phylogenetically conserved C-terminal region of
unknown function.
Length = 141
Score = 36.1 bits (84), Expect = 0.036
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEET---EKEEPIQEDEKEGNEEVM 1474
GR I +EK+ E++++ EE+ K+ +E++ GK E+E+ ++E EK N+ +
Sbjct: 9 GRIIDI----EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLA 64
Query: 1475 REDENKENDDRKKGEI 1490
R ++++ D+ K +
Sbjct: 65 RYADDEDYDEELKEQE 80
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 38.0 bits (88), Expect = 0.036
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E + + +++ ++++ +A+ + ++ E +ETE +E + +E+E EE ++
Sbjct: 120 EEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQA 179
Query: 1480 KENDDRKKGEIEDK-----------EEDGKENKSSETSADQEIDEVMTADE 1519
K ++DK E E +++ D D E
Sbjct: 180 TREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSE 230
Score = 36.9 bits (85), Expect = 0.10
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
EK+KK + AE E + +E K + +++ EE +ED+++ +++ E D K
Sbjct: 262 EKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVK 321
Query: 1487 KGEIEDKEEDGKENKSSETSADQEI 1511
E + D + K + ++
Sbjct: 322 LDEPVLEGVDLESPKELSSFEKRQA 346
Score = 36.1 bits (83), Expect = 0.16
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGK-------------------EETEKEEPIQEDE 1466
E++K EE+ E+ESV+Q E+K +EE DE
Sbjct: 159 DEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDE 218
Query: 1467 KEGNEEVMREDENKENDDRKKGEIEDKEEDGKEN 1500
+ + + E+ + DD G ED+E+D + N
Sbjct: 219 DDFEDYFQDDSEDGK-DDEDFGSGEDEEDDEEGN 251
Score = 34.6 bits (79), Expect = 0.47
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
E+ + +E K+ + + + ++E + E+ +DE+E E M + + E
Sbjct: 276 EDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESP 335
Query: 1493 KEEDGKENKSSE 1504
KE E + ++
Sbjct: 336 KELSSFEKRQAK 347
Score = 33.8 bits (77), Expect = 0.79
Identities = 17/91 (18%), Positives = 36/91 (39%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKG 1488
+K VE E V ++ + E+ + ++ +EE EDE+ E++
Sbjct: 76 QKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDE 135
Query: 1489 EIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ D + + + + + E DE +E
Sbjct: 136 DEADLFNESESSLEDLSDDETEDDEEKKMEE 166
Score = 31.9 bits (72), Expect = 3.1
Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
L + E + ++ +S ++E++ +E+ E+ + +DE E + E ++
Sbjct: 92 AKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDL 151
Query: 1483 DDRKKGEIEDKEED---GKENKSSETSADQE 1510
D + + E+K+ + E K S A +E
Sbjct: 152 SDDETEDDEEKKMEEEEAGEEKESVEQATRE 182
Score = 31.5 bits (71), Expect = 4.4
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE----------PIQE 1464
EA E + AL + E E+ + + E K E+ G++E + EE P ++
Sbjct: 205 EATEAEEEAALGD-EDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEK 263
Query: 1465 DEKE--GNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
D+K+ G++ + +DE + +K+ + + +EED ++++ + ++E E D
Sbjct: 264 DKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLD 323
Score = 30.3 bits (68), Expect = 9.0
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQED------EKEGNEEVMREDENKE 1481
++++ +E+ E E +E+ K K+ + E ++ +KE + + EDE +
Sbjct: 242 EDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDD 301
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ + E E E + K E + E
Sbjct: 302 EQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLE 333
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are RNase
Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in turnover
of yitJ riboswitch [Transcription, Degradation of RNA].
Length = 514
Score = 38.0 bits (89), Expect = 0.041
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 23/127 (18%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQT-----EEEQKGKEETEKEEPIQEDE--KEGNE 1471
+++ A ++ +EE KK E K+ EE K + E E+E + +E +
Sbjct: 25 KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR 84
Query: 1472 EVMRED--ENKENDDRKKGEIEDKEEDGKENKSS-----ETSADQEIDEV---------M 1515
+ RE+ + K KK E +K+E NK E ++ I E +
Sbjct: 85 LLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGL 144
Query: 1516 TADETKD 1522
T +E K+
Sbjct: 145 TQEEAKE 151
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil domain
of unknwon function.
Length = 126
Score = 35.7 bits (83), Expect = 0.045
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
+R + E + ++ K+ EE ++ E ++ +EE EK+E ++ ++ ++E+E K
Sbjct: 6 RREMEEVQLALDAKR---EEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR 62
Query: 1482 NDDRKKGEIE-----DKEEDGKENKSSETSADQEIDEVM 1515
KK E E +KEE+ KE K+ EI+++
Sbjct: 63 RRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLE 101
>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 36.4 bits (85), Expect = 0.050
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 888 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAATAFKMN------NPGCTVFV 936
R L++FAG+G L SRG A +E D A K N V
Sbjct: 46 RVLDLFAGSGALGLEALSRG------AARVVFVEKDRKAVKILKENLKALGLEGEARVLR 99
Query: 937 DDCNKILQRVIDNEVCD 953
+D + L+++ E D
Sbjct: 100 NDALRALKQLGTREPFD 116
Score = 36.4 bits (85), Expect = 0.057
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 17/75 (22%)
Query: 797 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAAAAFKMN------NPGCTVFV 845
R L++FAG+G L SRG A +E D A K N V
Sbjct: 46 RVLDLFAGSGALGLEALSRG------AARVVFVEKDRKAVKILKENLKALGLEGEARVLR 99
Query: 846 DDCNKILQRVIDNEV 860
+D + L+++ E
Sbjct: 100 NDALRALKQLGTREP 114
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components
[Intracellular trafficking and secretion].
Length = 94
Score = 34.7 bits (80), Expect = 0.052
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 1411 PPMGEALG---REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK 1467
P G LG RE K+A ++ + +++E+ K EE K+ E + + E+ + + + K
Sbjct: 26 PEAGRDLGKAIREFKKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQLASELK 85
Query: 1468 E 1468
E
Sbjct: 86 E 86
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 37.7 bits (88), Expect = 0.053
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
I + + +E++++ + EE + + EE + EE + + + E +E +E
Sbjct: 808 IDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEA---EEEI 864
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+N + K E + + D K+ + D I V+++DE K
Sbjct: 865 QNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIK 905
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes the
fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p
is localised exclusively to the nucleolus and binds near
or at the enhancer region of rRNA-encoding DNA repeating
units.
Length = 784
Score = 37.9 bits (88), Expect = 0.054
Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
I L E K ++ E E EE++ EET+ +E ++ + + E++
Sbjct: 628 ILDVLKADENKSRHQQLFEGE-----EEDEDDLEETDDDE---DECEAIED-----SESE 674
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSET---SADQEIDEVMTADETK 1521
D + GE +++E+D + N+ + + + +V+ +
Sbjct: 675 SESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDAL 718
Score = 30.6 bits (69), Expect = 8.5
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
GE + + E + E + +E ES +++ E ++E E + E ++ V
Sbjct: 647 GEEEDEDDLEETDDDEDECEAIEDSESES--ESDGEDGEEDEQEDDAEANEGVVPIDKAV 704
Query: 1474 MRE-DENKENDDRKKGEIEDKEED 1496
R + D G + EE
Sbjct: 705 RRALPKVLNLPDALDGGDSEDEEG 728
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 35.1 bits (81), Expect = 0.054
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 797 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN-----PGCTVFVDDCNKI 851
R L++ G G L+ L AR T ++ A + V D ++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVT-GVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 852 L 852
Sbjct: 60 P 60
Score = 34.3 bits (79), Expect = 0.10
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 888 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKI 942
R L++ G G L+ L AR T ++ A + V D ++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVT-GVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 943 L 943
Sbjct: 60 P 60
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 37.7 bits (87), Expect = 0.057
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 1400 EKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKG--KEETE 1457
+ + E REI++A E +K EE KA++ ++E K KE +
Sbjct: 262 KPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAED 321
Query: 1458 KEEPIQEDEKEGNEEVMREDENKENDDRKKGE 1489
KE Q+ + E++ + E E
Sbjct: 322 KELEAQKKREPVAEDLQKTKPQVEAQPTSLNE 353
Score = 36.5 bits (84), Expect = 0.11
Identities = 18/102 (17%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 1425 LAEKEKKVEEKKK--AEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
L E+E + + K+ +EE K+ + K +++ + + + +++ + +E +N
Sbjct: 203 LKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPK 262
Query: 1483 DDRKKGEIEDK---EEDGKENKSSETSADQEIDEVMTADETK 1521
EDK E +E + ++ + +E + A + K
Sbjct: 263 PADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHK 304
Score = 35.4 bits (81), Expect = 0.27
Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 1398 ILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE 1457
+ E+ Q + E L ++ A + ++K + + ++ + ++Q+ +
Sbjct: 203 LKERESQEDAKRAQQLKEELDKKQIDA-DKAQQKADFAQDNADKQRDEVRQKQQEAKNLP 261
Query: 1458 KEEPIQE--DEKEGNEEVMREDENKENDDRKKGEIEDKEED------GKENKSSETSADQ 1509
K ++K+ E RE E + + +K E K +D +E+K+SE A+
Sbjct: 262 KPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAED 321
Query: 1510 EIDEVMT 1516
+ E
Sbjct: 322 KELEAQK 328
Score = 34.6 bits (79), Expect = 0.41
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 1422 KRALAEKEKK-VEEKKKAEEES-----VKQTEEEQKGKEETEKE-EPIQEDEKEGNEEVM 1474
+ A+K++ V +K++ + +E+++ E ++E E Q + K+ +EE +
Sbjct: 239 AQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEAL 298
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ ++K D +++ + +KE E+K E +E
Sbjct: 299 KAKDHKAFDLKQESKASEKEA---EDKELEAQKKRE 331
Score = 34.2 bits (78), Expect = 0.55
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESV-KQTEEEQKGKEETEKEEPIQEDEK-EGNEEVMRE 1476
E+++ E K + + KQ E QK + E + E + DE+ ++
Sbjct: 248 DEVRQKQQE-AKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAF 306
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADET 1520
D +E+ +K E EDKE + ++ + Q+ + A T
Sbjct: 307 DLKQESKASEK-EAEDKELEAQKKREPVAEDLQKTKPQVEAQPT 349
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 36.9 bits (86), Expect = 0.061
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ-EDEKEGNEEVMR---EDENKEN 1482
+E+ +E K+ EE+ + E + EE KEE ++ DE E ++ E E +E
Sbjct: 49 LREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEW 108
Query: 1483 DDRKKGEIEDKEEDGKE 1499
++ + IE+ + +G E
Sbjct: 109 EEELERLIEEAKAEGYE 125
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 37.8 bits (88), Expect = 0.061
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 1411 PPMGEALGREIKRALAEKEKKVEEKKKAEE---ESVKQTEEEQKGKEETEKEEPIQEDEK 1467
E+L I+R + E + + +KKK E E++ Q K + EK E + K
Sbjct: 829 NGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRA--KKLDTAEKLEELYILAK 886
Query: 1468 EGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSE 1504
+ E +E N++ + GK ++
Sbjct: 887 KEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGT 923
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 36.8 bits (85), Expect = 0.063
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEE-QKGKEETEK----EEPIQEDEKEGNEEVM 1474
E E + ++ AE+ +Q E K EETE EE E K+ +E
Sbjct: 122 EEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKA 181
Query: 1475 REDEN------KENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E EN E +R K E +D E+ + + + + I E
Sbjct: 182 SEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKE 226
Score = 34.1 bits (78), Expect = 0.44
Identities = 15/104 (14%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 1420 EIKRALAEKEKKVEEKKKA---EEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
+K + E+ + EE + + +QK +EE +++ ++ +++
Sbjct: 66 GLKEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDG 125
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADET 1520
+ D K + + +D +E + +E ++ +ET
Sbjct: 126 PGKEPQLDEDKFLLAEDSDDRQETLEAGK-VHEETEDSYHVEET 168
Score = 33.8 bits (77), Expect = 0.51
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQ---KGKEETEKEEPIQEDEKEGNEEVMREDE 1478
K L KEK E EE+ EEE K + + EE ++E + E++
Sbjct: 62 KVLLGLKEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKI----V 117
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ ++ G+ E + ++ K + ++ QE E E
Sbjct: 118 VSKQEEDGPGK-EPQLDEDKFLLAEDSDDRQETLEAGKVHE 157
Score = 31.8 bits (72), Expect = 2.1
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 1401 KHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
K + PP E + LA ++ K+K EEE VK+ + K K+E
Sbjct: 68 KEKSTSEPTVPPEEAEPHAEEEGQLAVRK----TKQKVEEE-VKEQLQSLLEKIVVSKQE 122
Query: 1461 P---IQEDEKEGNEEVMREDENKENDDRKKGEI-EDKEEDGKENKSSETSADQEIDEVMT 1516
+E + + ++ ++ ED + + + G++ E+ E+ +++ Q++ E +
Sbjct: 123 EDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKAS 182
Query: 1517 ADETKD 1522
E +D
Sbjct: 183 EQENED 188
Score = 31.1 bits (70), Expect = 3.5
Identities = 15/88 (17%), Positives = 38/88 (43%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E + E E ++ A E+ + +E+ +E + +EP+++ E+ E +E+
Sbjct: 151 EAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEED 210
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSA 1507
+ +D + + +E+ + E
Sbjct: 211 YDEEDNPVEDSKAIKEELAKEPVEEQQE 238
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly related
to archaeal Holliday junction resolvase [Nucleotide
transport and metabolism].
Length = 175
Score = 35.9 bits (83), Expect = 0.068
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 1419 REIKRALAEKEKKVEE--KKKAEEESVKQT----EEEQKGKEETEK-EEPIQEDEKEGNE 1471
R ++ + K +++EE +K E V + EEE K KE EK E +ED +
Sbjct: 25 RSLQGKVESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEAREDAVRKSR 84
Query: 1472 EVMR 1475
V+
Sbjct: 85 AVIL 88
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 37.1 bits (86), Expect = 0.069
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 22/125 (17%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
M E G + A++E +++ E+ + G+EE+E + +EDE E +
Sbjct: 218 MAEETGDDGIEEDADEED-------GDDDQPDNNEDSEAGREESEGSDESEEDEAEATDG 270
Query: 1473 VMREDENKENDDRKKGEIEDKEED----GKENKSSETSAD-----------QEIDEVMTA 1517
E E + + E ++ +ED G++ + + + +E DE++ A
Sbjct: 271 EGEEGEMDAAEASEDSESDESDEDTETPGEDARPATPFTELMEEVDYKVFTREFDEIVLA 330
Query: 1518 DETKD 1522
+E D
Sbjct: 331 EELCD 335
Score = 34.8 bits (80), Expect = 0.42
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQK----------GKEETEKEEPIQ 1463
G+A + L ++E+K + + + ++Q+ G + +E
Sbjct: 166 GDAPPDSAGKVLDLWRDEIEDKAGEDLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDD 225
Query: 1464 EDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
E++ +EE +D+ N+D + G E + D E +E + + + M A E +
Sbjct: 226 GIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASE 284
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 37.5 bits (88), Expect = 0.070
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 1420 EIKRALAEKEKKVEEKKKAE--EESVKQTEEEQKGKEETEKE--EPIQEDEKEGNEEV-- 1473
E K AE K EK K E E+ K EEE K EE EKE + I+E +KE +E +
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592
Query: 1474 MREDENKENDDRKKGEIEDK 1493
+R+ + K E+ +
Sbjct: 593 LRQLQKGGYASVKAHELIEA 612
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 36.8 bits (86), Expect = 0.071
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 1422 KRALAEKEKKVEEKKKAEEESV-KQTEEEQKGKEETEKE 1459
+R +EKK E+KK+ E + K + EEQ+ EE E++
Sbjct: 279 ERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Score = 33.8 bits (78), Expect = 0.74
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1423 RALAEKE-KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
R E++ K E+++ EE ++ +EE+K +E K + +E+ EE R+ + +
Sbjct: 265 REEEEEKILKAAEEERQEEA--QEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Score = 32.6 bits (75), Expect = 1.6
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK-ENDDRK 1486
K + +++ EE+ +K EEE++ + + +KEE +E+ + ++ E++ K E +RK
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 1487 KGE 1489
K
Sbjct: 318 KQA 320
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 36.5 bits (85), Expect = 0.073
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 1423 RALAEKEKKVEEKKKAEE---------ESVKQTEEEQKGKEE--TEKEEPIQEDEK--EG 1469
R +EK E +K+AE+ ++ EE+ + EE E ++E EK +
Sbjct: 16 RLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATALEKLEEAEKAADE 75
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+E + EN+ D +K +E E KE K AD++ +EV
Sbjct: 76 SERGRKVLENRSLKDDEK--MEQLEAQLKEAKEIAEEADRKYEEV 118
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 36.6 bits (85), Expect = 0.082
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
I AL ++ +++K + + E E G +E + EE +++ E+E E+ E E++
Sbjct: 245 IGAALEAIKEVIKKKGG---DFKVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDE 301
Query: 1481 ENDDRKKGEIEDKEEDGK 1498
+ +D + E ED +E K
Sbjct: 302 DEEDEDEEEEEDDDEGDK 319
Score = 31.2 bits (71), Expect = 4.8
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1440 EESVKQTEE--EQKGKEETEKEEP-IQEDEKEGNEEVMREDENKENDDRKKGEIEDKEED 1496
+++ +E ++KG + K EP + ++E EE++ + E +E +D + E++
Sbjct: 246 GAALEAIKEVIKKKGGDFKVKGEPEVVGGDEEDLEELLEKAEEEEEED--DYSESEDEDE 303
Query: 1497 GKENKSSETSADQE 1510
E++ E D+
Sbjct: 304 EDEDEEEEEDDDEG 317
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function of
this family is unknown.
Length = 417
Score = 36.8 bits (84), Expect = 0.082
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE------EV 1473
E + E+EK+ EK+ E + + E++K K E EK++ QE +K N E+
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIEL 211
Query: 1474 MREDENKENDDRK-----KGEIEDKEEDGKEN 1500
+E + EN+ + K I++ E++ +EN
Sbjct: 212 EQEKQKTENEKQDLIKEQKDFIKEAEQNCQEN 243
Score = 35.6 bits (81), Expect = 0.19
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E++K +EK+K E+E ++ + K ++E +K E EK+ E+ ++ N N +
Sbjct: 154 EEQKTEQEKQKTEKEGIELANSQIKAEQEKQK----TEQEKQKTEQEKQKTSNIANKNAI 209
Query: 1487 KGEIEDKEEDGKENKSSETSAD 1508
+ E E ++ + ++ + D
Sbjct: 210 ELEQEKQKTENEKQDLIKEQKD 231
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 36.9 bits (86), Expect = 0.086
Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 17/139 (12%)
Query: 1381 ECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVE-EKKKAE 1439
E A+++ + I + E + + +VE
Sbjct: 493 EEAKTEFGEEKELLEELIEKLEEVRKEL----------EEELEEVEKLLDEVELLTGANS 542
Query: 1440 EESVKQTEEEQKGKEETEKE--EPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDG 1497
E + + P +E + E +EV + K D G E +D
Sbjct: 543 GGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAVDEVKFLKKKKGILD--AGAFESTLKDK 600
Query: 1498 KENKSSETSAD--QEIDEV 1514
K E + DEV
Sbjct: 601 KNKVLPEAKKRKLKLGDEV 619
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 34.9 bits (81), Expect = 0.088
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 1415 EALGREIKRA---LAEKEKKVEEKKKAEEESVK------QTEEEQKGKEETEKEEPIQED 1465
EAL +E + + E+K+EE K+ EE K +T EE K + E E I+E
Sbjct: 35 EALYKENEELKEEIERLEEKLEEYKELEETLQKTLVVAQETAEEVKANAQKEAELIIKEA 94
Query: 1466 EKEGNEEVMREDENKENDDRKKGEIED 1492
E + V ++ E + E ++
Sbjct: 95 EAKAERIV---NDANEEAKKLATEYDE 118
>gnl|CDD|240064 cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homology domain,
plant-specific sub-family with unknown function. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 146
Score = 35.1 bits (81), Expect = 0.089
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 393 EGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHI 452
G+ K +Y S G + ++ D V++ +D + P + + +Y+ + K +
Sbjct: 1 TGKGKKKKCHYTSFEKDGNKYRLEDCVLLVPED-DQKPYIAIIKDIYKQEEGSL--KLEV 57
Query: 453 LWFARGQETVLE-----ELSDPQELFLLEACDDVSLNAVANLCQVKHFP 496
W R +E + + DP+ELF D+V +V + C+V P
Sbjct: 58 QWLYRPEEIEKKKGGNWKAEDPRELFYSFHRDEVPAESVLHPCKVAFVP 106
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle pole
microtubules during metaphase. In Xenopus, it has been
shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 32.7 bits (75), Expect = 0.091
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE 1457
R KRA E +KK+EEK+KA E ++ E QK +EE
Sbjct: 6 RAEKRA--EFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 34.5 bits (79), Expect = 0.095
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
L R + R LA E KKA ++ + +EE + EE EK E + E +KE +
Sbjct: 28 LARSLGRGLA-------EFKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKA 80
Query: 1477 DEN----KENDDRKKGEIEDKEEDGKEN 1500
+E+ + + K DG +
Sbjct: 81 EEDQAPKPKGAGEPPATVASKAGDGAKA 108
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 35.8 bits (83), Expect = 0.099
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 1406 GNAVPPPMGEALGREI---KRALAEKEKKVEEKKKAEEESVKQ---TEEEQKGKEETEKE 1459
N + +AL ++ K K EK EEE ++Q +EE+ E +
Sbjct: 2 SNIINEDRDDALPFQVIEFKDLANAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQ 61
Query: 1460 EPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E I+E +EG EE + + ++G+ E + + E++
Sbjct: 62 EGIEEGAREGYEEGFQLG---YEEGFEEGQEEGRVL--ERLAKLIAEFQAELEA 110
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 36.8 bits (86), Expect = 0.100
Identities = 14/113 (12%), Positives = 40/113 (35%)
Query: 1407 NAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE 1466
E A + E++ E+ + + +K ++ + +P ++
Sbjct: 74 AEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKP 133
Query: 1467 KEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
K + + + R++G +++ K+ + + + I E +T E
Sbjct: 134 KRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPETITVAE 186
Score = 34.8 bits (81), Expect = 0.44
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
LG K L EK K++ + K+ +V EEE+ KEE ++E + +
Sbjct: 13 LGVSSKELL-EKLKELGIEVKSHSSTV---EEEEARKEEAKREAEEEAKAEAEEAAAAEA 68
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+E + + E+ E +++ A+ E
Sbjct: 69 EEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDE 102
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding protein
(GBP) is induced by interferon-gamma during macrophage
induction. This family contains GBP1 and GPB2, both
GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 36.1 bits (84), Expect = 0.11
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQ--------KGKEETEKEEPIQE-----DEK 1467
K AE E+++ +K+ EEE + + +E K E E+E+ + E + K
Sbjct: 211 AKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHK 270
Query: 1468 EGNEEVMREDENKENDDRKKGEIED 1492
+E + ++ K + + EI+D
Sbjct: 271 LQEQEELLKEGFKTEAESLQKEIQD 295
Score = 35.3 bits (82), Expect = 0.21
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
+AL KEK +E ++ E + + E + E+ ++EE + E ++ +E +++ K
Sbjct: 197 QALTAKEKAIEAERAKAEAAEAEQELLR---EKQKEEEQMMEAQERSYQEHVKQLIEKME 253
Query: 1483 DDRKK 1487
+R+K
Sbjct: 254 AEREK 258
Score = 32.6 bits (75), Expect = 1.5
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 1434 EKKKAEEESVKQT-----------EEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
K+A EE++ QT E E+ E E E+ + ++++ E++M E +E
Sbjct: 183 NSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMM---EAQER 239
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 36.7 bits (85), Expect = 0.11
Identities = 13/71 (18%), Positives = 32/71 (45%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
E + E + Q EEE+ + E E+ ++ E+ + +RE D+ + + +
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438
Query: 1493 KEEDGKENKSS 1503
+ + +E ++
Sbjct: 439 EAQPEEEEEAR 449
Score = 34.4 bits (79), Expect = 0.46
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGE 1489
K E + E++ Q+ +EE + E + E E + E E D R + E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAE-------QAERAEEDARLR-E 422
Query: 1490 IEDKEEDGKENKSSETSADQEIDEV 1514
+ ED E++ A E +E
Sbjct: 423 LYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 34.4 bits (79), Expect = 0.48
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
AE K E + EEE Q E E+ + E E+ E +ED + + EDE
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEE--RLEAEQAERAEEDARLRELYPLPEDE--FE 432
Query: 1483 DDRKKGEIEDKEEDGKE 1499
D+ + E + +EE+
Sbjct: 433 DEDELEEAQPEEEEEAR 449
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 36.3 bits (84), Expect = 0.11
Identities = 17/90 (18%), Positives = 32/90 (35%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ + + E ++++ E E+ K E EKE E + +
Sbjct: 78 KEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNT 137
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSE 1504
E K+ ++ K E E + K +S E
Sbjct: 138 AEIIEKKRENNKNEERLKFENEKKLEESLE 167
Score = 31.3 bits (71), Expect = 4.5
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQT-EEEQKGKEETEKEEPIQ-EDEKEGNE- 1471
E L E + L EK+++E K ++ ++ T E +K +E + EE ++ E+EK+ E
Sbjct: 106 ELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEES 165
Query: 1472 -----EVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E E ++ N D + E E ++ + K + + E
Sbjct: 166 LELEREKFEEQLHEANLDLEFKENE-EQRESKWAILKK---LKRRAE 208
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is a
family of conserved fungal proteins of unknown function.
Length = 169
Score = 35.1 bits (81), Expect = 0.11
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
EI L E+E K E+ +AEEE E + D KE ++ +
Sbjct: 61 EIHALLRERELK--EEAEAEEEG-----EVDASPDAGAVAGESSADRKEAEQQGAAQKRK 113
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSAD 1508
D +K + + S+ S D
Sbjct: 114 SCRDKERKSAKDPRGGTQDVVDKSQASLD 142
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754).
This is a eukaryotic protein family of unknown function.
Length = 90
Score = 33.5 bits (77), Expect = 0.11
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1431 KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEI 1490
V++KKK +++ K EE KEE EK + D KEG E+ E +E D E
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSA-ESDLKEGEEDEDNEKIEQEEDGMNLTEA 76
Query: 1491 E 1491
E
Sbjct: 77 E 77
Score = 28.9 bits (65), Expect = 5.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
K+KK ++ K EE ++ EEE+ E KE ED ++ +E
Sbjct: 23 KKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEE 68
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 36.7 bits (85), Expect = 0.12
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
L + +E EK + EE ++ EE + K E + E +E ++ NEE +
Sbjct: 626 NELEEAEEELESELEKL--NLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQL 683
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
E E ++ + E+E E+ +E +Q I+E+
Sbjct: 684 E--EKLEELEQLEEELEQLREELEELLKKLGEIEQLIEEL 721
Score = 36.7 bits (85), Expect = 0.13
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEE---SVKQTEEEQKGKEETEKEEPIQEDEKEGN- 1470
E E++ L E+ + +E+ + EE K+ E ++ E + E ++E E
Sbjct: 477 ELYELELEE-LEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKL 535
Query: 1471 EEVMREDENKENDDRK------KGEIEDKEEDGKENKSSETSADQE 1510
E++ E E K K E+ E+ +E K
Sbjct: 536 EKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL 581
Score = 35.9 bits (83), Expect = 0.20
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKG-KEETEKEEPIQEDEKEGNEEV 1473
E L +K + E + K+EE + E ++ E+ + +EE ++ + ++E ++E EE
Sbjct: 170 EKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEE 229
Query: 1474 MREDENKENDDRKKGEIEDKE-EDGKENKSSETSADQEIDE 1513
+ ++ + + E E + E+ K S + E +
Sbjct: 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALK 270
Score = 35.5 bits (82), Expect = 0.24
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE--KEEPIQEDEKE-------GN 1470
E++ E + +E ++ +EE ++ E+ + EE E KE+ + KE
Sbjct: 509 ELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL 568
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+E+ E +K E+E+ E KE K ++ + ++
Sbjct: 569 QELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL 612
Score = 35.1 bits (81), Expect = 0.36
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
L ++ AL E E+KVEE + +++ E E++ +E+ E+ E ++E+ ++ EE+
Sbjct: 646 AELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREEL- 704
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E +K GEIE E+ + K+ +E+++
Sbjct: 705 ------EELLKKLGEIEQLIEELESRKAELEELKKELEK 737
Score = 34.7 bits (80), Expect = 0.45
Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE--GNEEVMRED 1477
++K L + E +++E K+ EE +++ +E E+ + +++ KE + E
Sbjct: 556 QLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615
Query: 1478 ENKENDDRKKGEIEDKEEDGKENK 1501
+ E+E+ EE+ +
Sbjct: 616 LQSLELSEAENELEEAEEELESEL 639
Score = 33.2 bits (76), Expect = 1.3
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 1415 EALGREIK---------RALAEKEKKVEEKKKAEEESVKQTEEEQKG-KEETEKEEPIQE 1464
E L REI+ RAL E+ +++ EK K+ EE +++ EE+ + + E E+ +
Sbjct: 294 EELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353
Query: 1465 DEKEGNEEVMREDENKEN--DDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ + EE ++E E + + + +E ++ + + + + + E +
Sbjct: 354 ELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELE 413
Score = 32.0 bits (73), Expect = 2.8
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EAL + EKE+ E K + E + E + +EE + E + E+ +E E +
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ E + + + E+ E + + +E
Sbjct: 295 ELEREIEELEEELEGLRALLEE-LEELLEKLKSLEE 329
Score = 32.0 bits (73), Expect = 3.2
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E L +I+R L E E+++EE ++ E EE ++ E+ + E E +E E++
Sbjct: 284 EELEEKIER-LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLE 342
Query: 1475 RE----DENKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
E E K + E + E+ E E E
Sbjct: 343 SELEELAEEKNELAKLLEERLKELEERLEELEKELEKALER 383
Score = 31.3 bits (71), Expect = 4.8
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED-- 1477
EI+ E K EE+ + E +++ EE+ + EE E+E I+E E+E +
Sbjct: 260 EIESLELEALKIREEELRELERLLEELEEKIERLEELERE--IEELEEELEGLRALLEEL 317
Query: 1478 -----------ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E E + K ++E + E+ E K+ +E +
Sbjct: 318 EELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK 364
Score = 31.3 bits (71), Expect = 5.2
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEET-------EKEEPIQEDEKEGNEEVMREDEN 1479
E EK++ E + E E ++ EE + KEE E E+ ++E E+E E + E+
Sbjct: 470 EHEKELLELYELELEELE--EELSREKEEAELREEIEELEKELRELEEELIELLELEEAL 527
Query: 1480 KENDDRKKGEIEDKEE--DGKENKSSETSADQEIDE 1513
KE + K ++E+ E + + K +E+ +
Sbjct: 528 KEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQ 563
Score = 30.9 bits (70), Expect = 6.4
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E L EI+R L E EE+ + + E ++Q EEE + E+ E + + E + +
Sbjct: 664 EELEAEIRRELQRIEN--EEQLEEKLEELEQLEEELEQLR--EELEELLKKLGEIEQLIE 719
Query: 1475 REDENKENDDRKKGEIEDKEE 1495
+ K + K E+E E+
Sbjct: 720 ELESRKAELEELKKELEKLEK 740
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 35.3 bits (82), Expect = 0.12
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 1413 MGEALGREIKRALAEKE-KKVEEKKKAEEESVKQTEEEQKGKEETEK--EEPIQEDEKEG 1469
M +AL E ++ E+E KK+EE+K+ E+ V + E + E EK EE Q +EK
Sbjct: 112 MRKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAK---LEAIEKREEEERQIEEKRH 168
Query: 1470 NEEVMREDENKENDDRKKGEIE 1491
+E+ K+ + + K ++E
Sbjct: 169 ADEI---AFLKKQNQQLKSQLE 187
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold many
proteins. Hsp70 assisted folding involves repeated cycles
of substrate binding and release. Hsp70 activity is ATP
dependent. Hsp70 proteins are made up of two regions: the
amino terminus is the ATPase domain and the carboxyl
terminus is the substrate binding region.
Length = 598
Score = 36.4 bits (85), Expect = 0.12
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 1411 PPMGEALGREIKRALAEKEK-KVEEKKKAEEESVKQTEEE----QKGKEETEKEEPIQED 1465
EI+R + + E+ E+KK+ E K EE + + E ++ + D
Sbjct: 496 TASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEAD 555
Query: 1466 EKEGNEEVMREDENKENDDRKKGEIEDKEED 1496
+K+ E + E E +D K EIE K E+
Sbjct: 556 KKKVEEAIEWLKEELEGED--KEEIEAKTEE 584
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin binding
protein sp32 sequences. sp32 is a sperm specific protein
which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved in
packaging the acrosin zymogen into the acrosomal matrix.
Length = 243
Score = 35.8 bits (82), Expect = 0.13
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 1395 HGTILEKHRQVGNAVPPPMGEAL---GREIKRALAEKEKKVEEKKKAEEESVKQTE-EEQ 1450
+ + ++ N V + +L G +A K++++ K + + K E + Q
Sbjct: 162 NQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQ 221
Query: 1451 KGKEETEKEEPIQEDEKEGNEE 1472
+ +EE E EE +++E +G ++
Sbjct: 222 EEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 36.2 bits (83), Expect = 0.13
Identities = 17/66 (25%), Positives = 41/66 (62%)
Query: 1448 EEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSA 1507
EE++G ++ E+E+ E+ +E E + E+E +++D +K + ++ + +G EN+ +
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYI 159
Query: 1508 DQEIDE 1513
+E+D+
Sbjct: 160 IEEVDD 165
Score = 32.3 bits (73), Expect = 1.9
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 1437 KAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEED 1496
K EEE Q EEE E+ + EE + +E E EE +DE+ E DD K
Sbjct: 98 KNEEERGTQKEEE----EDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEK---------- 143
Query: 1497 GKENKSS--ETSADQEIDEV 1514
+ + E + + I+EV
Sbjct: 144 ESDAEGDENELAGEYIIEEV 163
Score = 32.3 bits (73), Expect = 1.9
Identities = 17/76 (22%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
I + E+ + EE++ + E +++ EE + +EE + +E ++D+++ + + E
Sbjct: 96 IVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKES-----DAEGD 150
Query: 1481 ENDDRKKGEIEDKEED 1496
EN+ + IE+ ++D
Sbjct: 151 ENELAGEYIIEEVDDD 166
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in association
with pfam07719, pfam00515. There is a single completely
conserved residue L that may be functionally important.
NARP1 is the mammalian homologue of a yeast N-terminal
acetyltransferase that regulates entry into the G(0)
phase of the cell cycle.
Length = 516
Score = 36.1 bits (84), Expect = 0.14
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKG-KEETEKEEP 1461
R+ +R +K +K E +K A ++ + ++ KG ET+K +P
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDP 458
Score = 33.4 bits (77), Expect = 0.98
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
+R K+++ EKK +EE+ K +++ + + P E +K
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 32.2 bits (74), Expect = 2.2
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 1424 ALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
L+ E+K KK+ + E + EE +K + +K E + K + E + D
Sbjct: 405 NLSPAERKKLRKKQRKAEKKAEKEEAEKAAAK-KKAEAAAKKAKGPDGETKKVDP 458
Score = 30.3 bits (69), Expect = 8.4
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN--KENDD 1484
E+KK + KQ + E+K ++E ++ ++ + ++ D K + D
Sbjct: 409 AERKKLRK---KQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 36.6 bits (85), Expect = 0.15
Identities = 21/106 (19%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 1419 REIKRALA-----EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
RE++ AL E +++EE ++ +E+ ++ EE +E E++ ++E E
Sbjct: 223 RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK--LEELRLE----- 275
Query: 1474 MREDENKENDDRKK-----GEIEDKEEDGKENKSSETSADQEIDEV 1514
+ E E + + +K+ EI E+ + + + +++++E+
Sbjct: 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
Score = 35.4 bits (82), Expect = 0.26
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E E+++ALAE K++EE ++ E+ + E E+ ++ + + + E E +
Sbjct: 690 EEKIAELEKALAELRKELEELEEELEQ--LRKELEELSRQISALRKDLARLEAEVEQLEE 747
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
R + + + EIE+ EE +E + A+ EI+E+
Sbjct: 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
Score = 32.7 bits (75), Expect = 1.9
Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 1416 ALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
AL EI R +K+ E E + + + ++ + + + E +E E +
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK------LDELAEELAELEEK 345
Query: 1476 EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+E KE + + E+E+ E + +E +S +++++ +
Sbjct: 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
Score = 32.3 bits (74), Expect = 2.3
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE--------TEKEEPIQEDE 1466
L EI+ E+ EE +AE E + + ++ KEE E +
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
Query: 1467 KEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+E R + + + +ED EE +E S EI+E
Sbjct: 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 34.6 bits (80), Expect = 0.15
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 1409 VPPPMGEALG---REIKRALAEKEKKVEEKKKAEEESVKQTEE-EQKGKE-----ETEKE 1459
V P+ +AL +I LAE E+ EE + E ++ EE ++ E + E E
Sbjct: 27 VWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAE 86
Query: 1460 EPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKE 1499
+ +E + E EE+ + KE + EIE ++E E
Sbjct: 87 QIAEEIKAEAEEEL---ERIKEAA---EAEIEAEKERALE 120
>gnl|CDD|167284 PRK01833, tatA, twin arginine translocase protein A; Provisional.
Length = 74
Score = 32.9 bits (75), Expect = 0.15
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 1413 MGEALGREIK---RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE 1455
+G LG +K +A+A+ + K E +K E + TE++ K KE+
Sbjct: 28 LGTDLGESVKGFKKAMADDKPKDAEFEKVEAKEAASTEQKAKEKEQ 73
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 36.0 bits (83), Expect = 0.18
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
+ +I R L + ++ EE+ + ++ E+E +G E K + + EG+EEV
Sbjct: 473 IFFKIIRPLERRRREREEELAKQAHLREEQEDEVEG--ELIKLDDLVGGINEGDEEVSNA 530
Query: 1477 DENKENDDR 1485
+ ++
Sbjct: 531 ELRAMAKEK 539
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 34.8 bits (80), Expect = 0.18
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 1374 HRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVE 1433
H + V + A ++ + KF EK +V NA + +A K AL E EKKV
Sbjct: 84 HLLGGVAKGAFTEAQAEA-KFEAWKEEKEGKV-NAKKDKLSKAKKAAKKAAL-EAEKKVN 140
Query: 1434 EK-------KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
E KKA E + EE +EE +E P +E E + E
Sbjct: 141 EARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 35.8 bits (83), Expect = 0.18
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1415 EALGREI---KRALAEKEKKVEE-KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
E L E KR L E ++++E+ + + E + ++ +K +E ++ I+ EKE
Sbjct: 432 ERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491
Query: 1471 EEVMREDE 1478
E+ R +E
Sbjct: 492 EKKKRVEE 499
Score = 34.7 bits (80), Expect = 0.41
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 1412 PMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE 1471
P+ EAL + E+E+ E++ EEE E K + EE ++ E+E +E
Sbjct: 389 PLAEALSKVK-----EEERPREKEGTEEEERR---EITVYEKRIKKLEETVERLEEENSE 440
Query: 1472 ---EVMREDENKENDDRKKGEIEDKEEDGKENKSSETSA-DQEIDE 1513
E+ E + + +E K K E A D+ I+
Sbjct: 441 LKRELEELKREIEKLESELERF-RREVRDKVRKDREIRARDRRIER 485
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 35.8 bits (83), Expect = 0.19
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 1419 REIKRALAEKEKKV-----EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
+E++ ALAE K++ +EK EE + + ++ ++ + E I E+ +E
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAE--IDRLEELLDELE 59
Query: 1474 MREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ + E ++ E E K E + D +E D
Sbjct: 60 AKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKALSTGTD 108
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 35.5 bits (82), Expect = 0.19
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKK 1487
+++ E++ KAE++ + E+K E+ E ++ EG E +D +E+DD
Sbjct: 199 LQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESA 258
Query: 1488 GEIEDKEEDGKENK 1501
E + E +
Sbjct: 259 WEGFESEYEPINKP 272
Score = 33.1 bits (76), Expect = 1.0
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKK--------AEEESVKQTEEEQKGKEETEKEEPIQED 1465
+ + E KR ++ ++VEEKK +E + EE E E ++ E
Sbjct: 204 EKEVKAEKKR---QELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDD---ES 257
Query: 1466 EKEGNEEVMREDENKENDDRKKGEIEDKEEDGKE 1499
EG E RK +KE+ KE
Sbjct: 258 AWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKE 291
Score = 31.6 bits (72), Expect = 3.6
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
K + + K KA+ K+ +E ++ + + EK+ + + +E+ +E KE +
Sbjct: 270 NKPVRPKRKTKAQRNKEKRRKELER-EAKEEKQLKKKLAQLARLKEIAKEVAQKEKARAR 328
Query: 1487 KGEIEDKEEDGKENK 1501
K E + + K+ K
Sbjct: 329 KKEQRKERGEKKKLK 343
Score = 31.2 bits (71), Expect = 4.8
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
R + KE+K +KK A+ +K+ +E KE+ + Q E+ +++ R
Sbjct: 288 RRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRR 345
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 34.6 bits (80), Expect = 0.20
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
+ E+ EE ++ E E + E E++ EE + E + E++ + E + DE +E R
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRL 63
Query: 1487 KGEIED-KEEDGKENKSSETSADQEI 1511
+ + E+ K KEN+++E Q +
Sbjct: 64 QADFENYKRRIQKENEAAEKYRAQSL 89
Score = 29.6 bits (67), Expect = 8.2
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 1446 TEEEQKGK---EETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKS 1502
E+ ++ + EETE EE ++++ +E E E E + + K E+E + D E +
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELE-AKLDELEERY 60
Query: 1503 SETSADQE 1510
AD E
Sbjct: 61 LRLQADFE 68
>gnl|CDD|214017 cd12924, iSH2_PIK3R1, Inter-Src homology 2 (iSH2) helical domain of
Class IA Phosphoinositide 3-kinase Regulatory subunit 1,
PIK3R1, also called p85alpha. PI3Ks catalyze the
transfer of the gamma-phosphoryl group from ATP to the
3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives.
They play an important role in a variety of fundamental
cellular processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, immune cell
activation and apoptosis. They are classified according
to their substrate specificity, regulation, and domain
structure. Class IA PI3Ks are heterodimers of a p110
catalytic (C) subunit and a p85-related regulatory (R)
subunit. The R subunit down-regulates PI3K basal
activity, stabilizes the C subunit, and plays a role in
the activation downstream of tyrosine kinases. All R
subunits contain two SH2 domains that flank an
intervening helical domain (iSH2), which binds to the
N-terminal adaptor-binding domain (ABD) of the catalytic
subunit. In addition, p85alpha, also called PIK3R1,
contains N-terminal SH3 and GAP domains. p85alpha carry
functions independent of its PI3K regulatory role. It can
independently stimulate signaling pathways involved in
cytoskeletal rearrangements. Insulin-sensitive tissues
express splice variants of the PIK3R1 gene, p50alpha and
p55alpha, which may play important roles in insulin
signaling during lipid and glucose metabolism. Mice
deficient with PIK3R1 die perinatally, indicating its
importance in development.
Length = 161
Score = 34.3 bits (78), Expect = 0.22
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 1392 HKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQK 1451
H+++ EK R+ + L E R E + K +A E++K EE+ +
Sbjct: 11 HEYNTQFQEKSREY---------DRLYEEYTRTSQEIQMK-RTAIEAFNETIKIFEEQCQ 60
Query: 1452 GKEETEKEEPIQEDEKEGNE-EVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+E KE I++ ++EGNE E+ R N E + EI D +E+ + + +E
Sbjct: 61 TQERYSKEY-IEKFKREGNEKEIQRIMHNYEKLKSRISEIVDSRRRLEEDLKKQAAEYRE 119
Query: 1511 IDEVMTA 1517
ID+ M +
Sbjct: 120 IDKRMNS 126
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 33.2 bits (76), Expect = 0.23
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 21/112 (18%)
Query: 886 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAA------TAFKMNNPGCTVFVDDC 939
R L+ AG+G ++G +E D AA A P V V D
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 940 NKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAF 991
++L+ G +++ G PP +G + N+ Y F
Sbjct: 61 RELLEL---------------PDGSFDLVLGNPPYGPRAGDPKDNRDLYDRF 97
Score = 32.8 bits (75), Expect = 0.39
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAA------FKMNNPGCTVFVDDC 848
R L+ AG+G ++G +E D AAA P V V D
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 849 NKILQ 853
++L+
Sbjct: 61 RELLE 65
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 35.4 bits (82), Expect = 0.26
Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 1420 EIKRALAEKEK---KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
EI+ + E +K K+EEK + E +++ EEE + + ++ ++ K+ + +
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEA 151
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ K ++ + + N SS S ++ ++ T
Sbjct: 152 LKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFS 194
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but not
all members of the Firmicutes (formerly called low-GC
Gram-positives). The C-terminal region of these proteins
is poorly conserved.
Length = 185
Score = 34.2 bits (79), Expect = 0.28
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV---MREDE 1478
+ +L + + +KK+ + EE + E + E+ ++E+ ++V + ED
Sbjct: 56 ESSLIIENEIESKKKEIQASQRAYILEEYAKQLEKQVEKKLKEEYGVKVKDVEVEIDEDL 115
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
N D K+ + KEE ++ KS +
Sbjct: 116 ESNNFDIKEVNVTLKEESKEKQKSKVEPVVIDTQT 150
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is thought
to translocate protons through membrane (inner membrane
in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1) subunits.
This domain should not be confused with the ab CF(1)
proteins (in the head of the ATP synthase) which are
found in pfam00006.
Length = 132
Score = 33.4 bits (77), Expect = 0.28
Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 1421 IKRALAEKEKKVEEK-KKAEE---ESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
+ + L E+++K+ K+AEE ++ E ++ + E E +E +
Sbjct: 24 LGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAE--ASEIINNAKKEAQKL 81
Query: 1477 DENKENDDRKKGE--IEDKEED-GKENKSSETSADQEIDEV 1514
E + +K E +E + +E + + Q++ +
Sbjct: 82 KEEILAEAQKDAERLLESARAEIEQEKEQALAELRQQVAAL 122
Score = 29.9 bits (68), Expect = 4.3
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
I A E +K EE ++ ++ E + + E EKE+ + E ++
Sbjct: 69 EIINNAKKEAQKLKEEILAEAQKDAERLLESARAEIEQEKEQALAELRQQ 118
>gnl|CDD|214019 cd12926, iSH2_PIK3R2, Inter-Src homology 2 (iSH2) helical domain of
Class IA Phosphoinositide 3-kinase Regulatory subunit 2,
PIK3R2, also called p85beta. PI3Ks catalyze the transfer
of the gamma-phosphoryl group from ATP to the 3-hydroxyl
of the inositol ring of D-myo-phosphatidylinositol
(PtdIns) or its derivatives. They play an important role
in a variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation, and apoptosis. They
are classified according to their substrate specificity,
regulation, and domain structure. Class IA PI3Ks are
heterodimers of a p110 catalytic (C) subunit and a
p85-related regulatory (R) subunit. The R subunit
down-regulates PI3K basal activity, stabilizes the C
subunit, and plays a role in the activation downstream of
tyrosine kinases. All R subunits contain two SH2 domains
that flank an intervening helical domain (iSH2), which
binds to the N-terminal adaptor-binding domain (ABD) of
the catalytic subunit. p85beta, also called PIK3R2,
contains N-terminal SH3 and GAP domains. It is expressed
ubiquitously but at lower levels than p85alpha. Its
expression is increased in breast and colon cancer,
correlates with tumor progression, and enhanced invasion.
During viral infection, the viral nonstructural (NS1)
protein binds p85beta specifically, which leads to PI3K
activation and the promotion of viral replication. Mice
deficient with PIK3R2 develop normally and exhibit
moderate metabolic and immunological defects.
Length = 161
Score = 33.9 bits (77), Expect = 0.28
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1437 KAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE-EVMREDENKENDDRKKGEIEDKEE 1495
+A E++K EE+ + +E+ KE ++ +EGNE E+ R N E + EI +
Sbjct: 46 EAFNETIKIFEEQGQTQEKCSKEY-LERFRREGNEKEMQRILLNSERLKSRIAEIHESRT 104
Query: 1496 DGKENKSSETSADQEIDEVMTA 1517
+++ ++ S ++EID+ M +
Sbjct: 105 KLEQDLRAQASDNREIDKRMNS 126
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 35.0 bits (80), Expect = 0.30
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 1400 EKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGK------ 1453
E++R+ A+P + +RA A + K K + E ++ EE+K K
Sbjct: 39 EENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAA 98
Query: 1454 -EETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEID 1512
K + + ++EG EEV E++ + K K + K ++ +
Sbjct: 99 AAAKAKAAALAKQKREGTEEVTEEEKAAA---KAKAAAAAKAKAAALAKQKREGTEEVTE 155
Query: 1513 EVMTADETK 1521
E D+ K
Sbjct: 156 EEEETDKEK 164
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 33.5 bits (77), Expect = 0.31
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 1415 EALGREIKRALAEKEKKVEE---KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE 1471
E E ++ EK++K EE KK+A+ + KQ ++K K++ +K +E E +
Sbjct: 62 ETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQ---KKKKKKKAKKGNKKEEKEGSKSS 118
Query: 1472 EVMREDENKENDDRKKGEIEDKEE 1495
E ++E + +D+++ +E E+
Sbjct: 119 EESSDEEEEGEEDKQEEPVEIMEK 142
Score = 29.6 bits (67), Expect = 6.0
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK--------EEPIQEDEKEGN 1470
RE +R L ++K +++ + EE K+ E+++K +E+T K ++ ++ +K
Sbjct: 47 REYER-LELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKK 105
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E E ++ + E D+EE+G+E+K E E
Sbjct: 106 GNKKEEKEGSKSSE----ESSDEEEEGEEDKQEEPVEIME 141
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 34.0 bits (78), Expect = 0.31
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 1420 EIKRALAEKEKKVEEKKKA---EEESVKQTEEEQKGKEETEKE-----EPIQEDEKEGNE 1471
E +A+ EK+ + K+ EE + + ++ +EE + E + +++++ +E
Sbjct: 89 EEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDE 148
Query: 1472 EVMREDENKEND-DRKKGEIEDKEED 1496
V E+ E D D E E+ EED
Sbjct: 149 IVEILIEDDEVDEDEDDDEDEEDEED 174
Score = 30.9 bits (70), Expect = 2.8
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 1442 SVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENK 1501
+ + +EE + E + + +D++ E EDE ++D K+ E +D+ + +
Sbjct: 83 PLDEIDEEIQAMTEKKDIK--AKDKEVDAFEEGDEDELDYDED-KEEEEDDEVDSLDDEN 139
Query: 1502 SSETSADQEIDEVMTADETKD 1522
E D EI E++ D+ D
Sbjct: 140 DDEDEDDDEIVEILIEDDEVD 160
Score = 30.5 bits (69), Expect = 4.2
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
++E + +KK + K+ + ++G E+ + + ++ E+E ++EV D+ +++D
Sbjct: 88 DEEIQAMTEKKDIKAKDKEVDAFEEGDED--ELDYDEDKEEEEDDEVDSLDDENDDEDED 145
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDE 1513
EI + + E E + E DE
Sbjct: 146 DDEIVEILIEDDEVDEDEDDDEDEEDE 172
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 35.3 bits (81), Expect = 0.31
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 1408 AVPPPMGEALGREI-KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE 1466
P EA G+ + K A ++ +A KQ +E KG + E + E
Sbjct: 766 EYPRMYEEASGKSVRKVNTAVLSTTIKAAARA-----KQKPKE-KGPNDKEIKIESPSVE 819
Query: 1467 KEGNEEVMREDENKENDDRKKGEIEDKEEDGKEN 1500
EG +++ E K D ++ K+ +N
Sbjct: 820 TEGERCTIKQREEKGIDAPAILNVKKKKPYKVDN 853
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component TAF4
family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 34.7 bits (80), Expect = 0.31
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 1398 ILEKHRQVGNAVPPPMGEA--LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE 1455
+L +HR+ G P + R+++ LA+K+K+ EE++ + + EQ ++
Sbjct: 90 VLSRHRRDGIKSDPNYEIRSDVRRQLRF-LAQKQKEEEERRVERRRELGLEDPEQLRLKQ 148
Query: 1456 TEKEEPIQEDEK 1467
KEE E E+
Sbjct: 149 KAKEEQKAESEE 160
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 35.1 bits (81), Expect = 0.33
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+ E L ++ E E+ + E E +EE E+EE +EDE EG +
Sbjct: 352 LWETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEE-EEEDEDEGPSK 410
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKS 1502
+DE E DD E K ED N S
Sbjct: 411 EHSDDEEFEEDDV-----ESKYEDSDGNSS 435
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 34.9 bits (81), Expect = 0.34
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 25/95 (26%)
Query: 1416 ALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
L +EI RAL E EE VK+ +E+ K E E E E + ++
Sbjct: 54 ELSKEIGRALKRGEDDAEELIAE----VKELKEKLKELEAALDEL-----EAELDTLLLT 104
Query: 1476 --------------EDENKENDDRKKGEIEDKEED 1496
ED+N E R+ GE D
Sbjct: 105 IPNIPHESVPVGKDEDDNVEV--RRWGEPPVFVFD 137
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 34.9 bits (80), Expect = 0.34
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 22/144 (15%)
Query: 524 YRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDKAEEEEALSTP-------NLRNLTEQGT 576
QT P+ F + + + + + + LS P N +Q
Sbjct: 93 RLQTSTPIVEIFKNNKDAVDPPNHTRSSGNNLSNANVKTLSAPVGEHSRSNNPPNLDQNL 152
Query: 577 THEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPE------- 629
E + +S GE S ++ + + +N K ++ +L
Sbjct: 153 DTEPESSISQWGELQLNPSGKTLSS-----QPSRKPTSENPKSESDNSKLPTSVNSPLPD 207
Query: 630 ---AYRKLSDYMKGSNAYTPAPFG 650
R LS++ N+Y P
Sbjct: 208 KSLLKRTLSNFWAERNSYNWKPLV 231
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein). This
family consists of several brain acid soluble protein 1
(BASP1) or neuronal axonal membrane protein NAP-22. The
BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 34.4 bits (78), Expect = 0.36
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
+K+KK E EE + K+ EE Q E TE +E +E + ++ + E KE + K
Sbjct: 20 DKDKKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGE--K 77
Query: 1487 KGEIEDKEEDGKENKSSETSAD 1508
+ +E E + +E +A+
Sbjct: 78 EAAAAKEEAPKAEPEKTEGAAE 99
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 34.1 bits (78), Expect = 0.36
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
+ A+ K KA+E S+K E E K + E + +E EG ++
Sbjct: 146 KEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this family
was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 34.5 bits (79), Expect = 0.37
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKE-------------EPIQEDEKEGNEEVMRE 1476
++EE+ ++ EE +++EEE++ E + E IQE E+E +E E
Sbjct: 5 LELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALE 64
Query: 1477 DENKENDDRKKGE----IEDKEEDGKENKSSETSADQEIDEVMTADET 1520
+E K + +K E +E++ + E K T + ID+V T DE
Sbjct: 65 EEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDEN 112
Score = 33.7 bits (77), Expect = 0.59
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAE----EESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
E + K E ++K EE+K+ EE VK+ E +K E + + E
Sbjct: 54 EREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDENE 113
Query: 1471 EE------------VMREDENKENDDRKKGEIE 1491
EE + R+ E +E +R+K EIE
Sbjct: 114 EEEYEAWKLRELKRIKRDREEREEMEREKAEIE 146
Score = 32.6 bits (74), Expect = 1.2
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEE---------EQKGKEETEKEEPIQEDEKE- 1468
++ + + E+E++ ++K EEE+ ++ EE E++ K+E E ++ E
Sbjct: 44 KKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANI 103
Query: 1469 GNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV--MTADETKD 1522
+ + E+E +E + K E++ + D +E + E EI+++ MT +E +
Sbjct: 104 DDVDTDDENEEEEYEAWKLRELKRIKRDREEREEMERE-KAEIEKMRNMTEEERRA 158
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 34.5 bits (79), Expect = 0.37
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
++K E ++K+EE +K +EE +K+ EE + EE ++ E E EE++++
Sbjct: 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191
Query: 1480 KENDDRKK-GEIEDKEE 1495
+ D +K+ E+E E
Sbjct: 192 EVYDLKKRWDELEPGVE 208
Score = 29.9 bits (67), Expect = 9.5
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 1415 EALGREIKRALA-------EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE-EPIQEDE 1466
E + +E+K AL ++ + + K+ EE ++ EE QK KEE KE E ++ +
Sbjct: 106 ELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEY 165
Query: 1467 KEGNEEVMR-EDEN---KENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+E E + R E EN +E + GE+ D ++ E + ++E
Sbjct: 166 EEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is a
family of fungal proteins whose function is not known.
Length = 126
Score = 33.0 bits (76), Expect = 0.38
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1415 EALGRE-IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
+A+ R ++ L E +++ E ++ +EE K EEE K + E KE + ++K+
Sbjct: 75 DAIARSRVQPVLDEIDERAEAQRARDEEK-KLDEEEAKRQHEEAKER--EREKKK 126
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 34.9 bits (80), Expect = 0.41
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKG 1488
E+++E KKK EE++ ++ ++ K ++ E + +Q + V ++ E K RK+
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQK-EAKAKLQAQQASDGTNVPKKSEKKS---RKRD 70
Query: 1489 EIEDKEED 1496
++ ED
Sbjct: 71 VEDENPED 78
Score = 31.0 bits (70), Expect = 6.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
L K+KK E+ K+ E + +K ++E K K + ++ K+ ++ + D EN
Sbjct: 18 LERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDEN 75
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 33.7 bits (77), Expect = 0.46
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E EK++ ++ EE+ V ++ + E E+ Q ++ + + E + K
Sbjct: 3 EVEKEINKE---EEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQK------ 53
Query: 1487 KGEIEDKEEDGKE 1499
++ KE + +E
Sbjct: 54 ---LQQKEVEAQE 63
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 32.9 bits (75), Expect = 0.46
Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE------- 1471
+E ++ AE+E+ E+K K +++ G+E+T+ EE ++
Sbjct: 44 KEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPSAVPQWGKKA 103
Query: 1472 -----EVMREDENKENDDRKKGEIEDKEEDGKE 1499
+V+R+ + + ++ + +D++ED +E
Sbjct: 104 RKRQRKVIRKLL-EAEEQLREDQYDDEDEDIEE 135
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 33.6 bits (77), Expect = 0.47
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
K +KEK EE+KK E + +TEE + + E+ QE + + +++ +
Sbjct: 67 KSKKKDKEKLTEEEKKPESDD-DKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMD 125
Query: 1482 NDDRK 1486
+ D K
Sbjct: 126 DSDLK 130
Score = 33.2 bits (76), Expect = 0.67
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
+K++ +K A + K+ ++E K E+++P +D+K E END
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKE---KLTEEEKKPESDDDK---------TEENENDPDN 99
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDE 1513
E D +E N S+ + ++D+
Sbjct: 100 NEESGDSQESASANSLSDIDNEDDMDD 126
Score = 29.7 bits (67), Expect = 8.4
Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
++ K+ K ++K+K EE K ++ ++TE+ E ++ +E + N
Sbjct: 60 RKPATTKKSKKKDKEKLTEEEKKPESDD----DKTEENENDPDNNEESGDSQESASANSL 115
Query: 1482 NDDRKKGEIEDKE 1494
+D + +++D +
Sbjct: 116 SDIDNEDDMDDSD 128
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded proton
translocating A0 complex. It is unclear precisely where
AhaH fits into these complexes.
Length = 85
Score = 31.7 bits (72), Expect = 0.49
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 1419 REIKRALAEKEKKVEEKKKAEE-------ESVKQTEEEQKGKEETEKEEPIQEDEKEGNE 1471
EIK+A + E+ +EE ++ + E ++ EE + + EE I+E E+E
Sbjct: 2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEI-- 59
Query: 1472 EVMREDENKENDDRKKGEIEDKEEDGKEN 1500
E E ++ + + EIE + KE
Sbjct: 60 ----EKEAEKIREEGEKEIEAMKSKAKEK 84
Score = 28.7 bits (64), Expect = 5.8
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 1432 VEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIE 1491
+EE KKAEE++ + EE E E+++ I E +E E + E+ +E + I+
Sbjct: 1 LEEIKKAEEDAEELIEE-----AEEERKQRIAEAREEARE--LLEEAEEEASKLGEEIIK 53
Query: 1492 DKEEDG-KENKSSETSADQEIDEVMTADETK 1521
+ EE+ KE + ++EI+ + + + K
Sbjct: 54 EAEEEIEKEAEKIREEGEKEIEAMKSKAKEK 84
>gnl|CDD|220719 pfam10368, YkyA, Putative cell-wall binding lipoprotein. YkyA is a
family of proteins containing a lipoprotein signal and a
hydrolase domain. It is similar to cell wall binding
proteins and might also be recognisable by a host immune
defence system. It is thus likely to belong to pathways
important for pathogenicity.
Length = 205
Score = 33.5 bits (77), Expect = 0.53
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM--REDENKENDDRK 1486
EK E++K EEE K E E+K +E ++ I + K+ NE + + D R+
Sbjct: 26 EKAAEQEKPFEEEQKKLEELEKKEQELYDQ---IIQLGKDDNEAIKKLSDQALANVDKRE 82
Query: 1487 K---GEIEDKEEDGKENKSSETSADQEIDEVM 1515
K E E E+ +E KS++ ++ D+ +
Sbjct: 83 KLLKKEKESIEKSEEEFKSAKKYIEKIEDKKL 114
>gnl|CDD|227468 COG5139, COG5139, Uncharacterized conserved protein [Function
unknown].
Length = 397
Score = 34.3 bits (78), Expect = 0.53
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 7/115 (6%)
Query: 1412 PMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQK------GKEETEKEEPIQED 1465
P + G + +K EE E +V+ E ++K ++ +
Sbjct: 43 PQETSKGTSNDTKDPDNGEKNEEAAIDENSNVEAAERKRKHISTDFSDMSLLRKRKNDQS 102
Query: 1466 EKEGNEEVMREDENKENDDRKKGEIEDK-EEDGKENKSSETSADQEIDEVMTADE 1519
+ E + D ++ + + GE+ D + K +S +++ E +
Sbjct: 103 LQPTREPMDSRDSGQDFTEAQSGELGDTGDRQLKAPAASRARRKEDLLEQTVDEI 157
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region [General
function prediction only].
Length = 303
Score = 33.9 bits (77), Expect = 0.54
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 1422 KRALAEKEKKVEEKKK-AEEESVKQTEEEQKGKEETEKEEPIQEDEK-EGNEEVMREDEN 1479
+A E+EK+ +EK++ EEE TE E + +++ ++ EK G+++ M E+
Sbjct: 187 NKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSES 246
Query: 1480 KENDDRKKGEIEDKEEDGK 1498
+E + + ED++ED K
Sbjct: 247 EEEESSESESDEDEDEDNK 265
Score = 30.8 bits (69), Expect = 6.3
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 1427 EKEKKVEEKKKAEE-ESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
+ EK+ +KK E+ Q+ E + +EE E EDE E N+ +R+ + +
Sbjct: 220 DSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKS 279
Query: 1486 KKGEIEDKEEDGKENKSSETSADQ 1509
+K I + E +EN+
Sbjct: 280 RKPHIHIEYEQERENEKIPAVQHS 303
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 33.6 bits (77), Expect = 0.55
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
E E E+ K E K KE+ + E+ ++ + + + + +
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPK-----PKPKPKPKPKVKP 113
Query: 1487 KGEIEDKEEDGKENKSSETSAD 1508
+ + + + +
Sbjct: 114 QPKPKKPPSKTAAKAPAAPNQP 135
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This family
includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 34.3 bits (77), Expect = 0.58
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE---ND 1483
EK KK EKKKA+++ K E EQK + E+ + E E + +E+E+K+
Sbjct: 68 EKVKK-SEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQ 126
Query: 1484 DRKKGEIEDKEEDGKE 1499
+R + E E KE D K+
Sbjct: 127 ERIQKEQEKKEADLKK 142
Score = 32.7 bits (73), Expect = 1.6
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQK--GKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
E E+KV KK AE+E+ + E +K +EE K+ +++ + +E D K +
Sbjct: 87 EAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAE 146
Query: 1485 RKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+KK + E+ K K+ + S ++E
Sbjct: 147 KKKEKAVKAEKAEKAEKTKKASTPAPVEE 175
Score = 32.0 bits (71), Expect = 2.6
Identities = 21/92 (22%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E ++ + K+ +E ++AE E+ K+ +E++ K+ ++E IQ+++++ ++ +
Sbjct: 87 EAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAE 146
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
K+ + K E +K E K+ S+ ++EI
Sbjct: 147 KKKEKAVKAEKAEKAEKTKK-ASTPAPVEEEI 177
>gnl|CDD|215643 PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.
Length = 1315
Score = 34.5 bits (79), Expect = 0.59
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 333 KAKQACIKRRCPNKAVQDAEDSDIELDGDEVEEKVVKATTKPSWKIKVTGS---GKKQIE 389
K +KRRCPN + D DIE D + + A GS Q+E
Sbjct: 86 KQAARLLKRRCPNVDLVVFSDRDIESDRERFAAALDGADV-------FFGSLLFDYDQVE 138
Query: 390 W-QGEGEEMDSKLYYKSALIGGEEVKVGDYVMVE--SDDPNNPPPVGK 434
W + E++ +L ++SAL VG + M PPP K
Sbjct: 139 WLRARLEKVPPRLVFESALELMSCNSVGSFSMKAAPGGKKAGPPPAVK 186
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 34.0 bits (78), Expect = 0.61
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEE--EQKGKEETEKEEPIQEDEK 1467
P RE+K LAE E +V K +Q E EQ +EE + E + K
Sbjct: 256 PAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAK 315
Query: 1468 EGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQ 1509
MR + +K+ E+E +E N + + ++
Sbjct: 316 ALEAREMRVGLIER---QKETELEPQERSYFINAAQRQAQEE 354
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 32.7 bits (75), Expect = 0.63
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 1422 KRALAEKEKKVEEKKKAEEESV-KQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
+R + +K+ EK+K +EE K E +K + E EK++ + + +++M D +
Sbjct: 73 RRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKK-AEAKLMKEEKKIMFADTSS 131
Query: 1481 ENDDRK 1486
+ +++
Sbjct: 132 LSPEQR 137
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of
this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded and
aggregated proteins [Protein fate, Protein folding and
stabilization].
Length = 852
Score = 34.2 bits (79), Expect = 0.68
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 1420 EIKRALAEKEKKVEEKKKAE--EESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
EI+R +KEK K++ E E+ + + EEE EE + EK + +
Sbjct: 418 EIEREALKKEKDEASKERLEDLEKELAELEEEYADLEE------QWKAEKAAIQGI---Q 468
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSE 1504
+ KE ++ + E+E E +G K++E
Sbjct: 469 QIKEEIEQVRLELEQAEREGDLAKAAE 495
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869). This
family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 34.2 bits (78), Expect = 0.68
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEE-QKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
+ + E + +E + K E K +E+ ++E EKE ++ E+ + E E
Sbjct: 653 KCMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAE 712
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + + EE+ K + E +A E
Sbjct: 713 QE---ENMQKLDEEEQKIKQEKEIAAAAE 738
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary structure
consisting of four alpha helices, three of which (H2, H3,
H4) form an L-like configuration. Helix H2 runs
antiparallel to helices H3 and H4, packing closely
against helix H4, whilst helix H1 reposes in the concave
surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 31.9 bits (73), Expect = 0.69
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 1411 PPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE 1459
P+ + + + E+E K + +++ + + TEEE++ K+ +E
Sbjct: 61 VPLDDVGDGDEE-DEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 32.6 bits (74), Expect = 0.70
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 1413 MGEALG---REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
M + +G +++K L KE + +E EE+ EE Q+ E E+E + + E
Sbjct: 5 MKQMVGNQLKDVKGMLGGKEDEGDESDAEEED-----EEIQEALREAEEERKAKHRKMEE 59
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKE 1499
EVMR+ R K I+ KEED +E
Sbjct: 60 EREVMRQ------GIRDKYGIKKKEEDEEE 83
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 33.9 bits (77), Expect = 0.71
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 33/130 (25%)
Query: 1415 EALGREIKRALAEKEKK-------VEEKKKAEEESVKQTE---------------EEQKG 1452
E + +++ L + K +EK+ A +E V E +++K
Sbjct: 203 EEVEKKVDDLLEKDMKAESVSVVLKDEKELARQERVSSWENFKEEPGEPLSRPALKKEKQ 262
Query: 1453 KEETEKEEPIQEDE------KEGNEEVMRED-----ENKENDDRKKGEIEDKEEDGKENK 1501
E E EE + E++ + N+EV D E EN + K E++ D +
Sbjct: 263 GAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEE 322
Query: 1502 SSETSADQEI 1511
E ++E
Sbjct: 323 KEEDDENEEN 332
Score = 32.4 bits (73), Expect = 1.9
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG--NEEVMREDENKENDDRKKGEI 1490
E K+ E +Q +EE + E ++E ++ G EE +EN+ + + E+
Sbjct: 284 IENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADEL 343
Query: 1491 EDKEEDGKENKSSETSADQEI 1511
+ E+ +E + SA I
Sbjct: 344 NELEKGIEEKRRQMESATNPI 364
Score = 31.6 bits (71), Expect = 3.7
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 1412 PMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE---EPIQEDEKE 1468
P +K+ E++ EE E+ V E E K E +KE E ++ E
Sbjct: 248 PGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAH 307
Query: 1469 GNEEVMREDENKENDDRKKGEIEDKEED--GKENKSSETSADQEIDEVMTADETK 1521
E + + + E+KEED +EN+ E++E+ E K
Sbjct: 308 KEEV---QSDRPD------EIGEEKEEDDENEENERHTELLADELNELEKGIEEK 353
Score = 30.4 bits (68), Expect = 8.1
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 1411 PPMGEALGREIKRALAEKEKKVEEKK------KAEEESVKQTEEEQKGKEETEKEEPIQE 1464
P AL +E + A E E+ + E+ + E + V + ++EQ+ +E E +E
Sbjct: 251 PLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEE 310
Query: 1465 DEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + +E E KE DD + E E E + + +E
Sbjct: 311 VQSDRPDE---IGEEKEEDDENE-ENERHTELLADELNELEKGIEE 352
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827). This
family consists of several plant proteins of unknown
function. Several sequences in this family are described
as being "myosin heavy chain-like".
Length = 484
Score = 33.8 bits (77), Expect = 0.72
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 1415 EALGREIKRALAEKEK--KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
E E +L + K E++ KA E+ V+ + Q+ E E+ E +E +
Sbjct: 303 EGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRK 362
Query: 1473 VMREDENKEN---DDRKKGEIEDKEEDGKENKSSETSADQEI 1511
+ E E + + E KE + K++E A EI
Sbjct: 363 LKEEAEQTKAALETAELRLEAALKEAE--AAKAAEALALAEI 402
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known are
cyclin dependent protein kinases that are components of
TFIIH, a complex that is involved in nucleotide excision
repair and transcription initiation. Also known as MAT1
(menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 33.6 bits (77), Expect = 0.73
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
L +KK+E +K ++ + Q +E+ +E+ E EE E EKE E+ + +E +
Sbjct: 115 LENTKKKIETYQKENKDVI-QKNKEKSTREQEELEE-ALEFEKEEEEQRRLLLQKEEEEQ 172
Query: 1485 RKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ ++K+ E ++S A + I +
Sbjct: 173 QMNKR-KNKQALLDELETSTLPAAELIAQ 200
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase)
G subunit. V-ATPases generate an acidic environment in
several intracellular compartments. Correspondingly, they
are found as membrane-attached proteins in several
organelles. They are also found in the plasma membranes
of some specialised cells. V-ATPases consist of
peripheral (V1) and membrane integral (V0)
heteromultimeric complexes. The G subunit is part of the
V1 subunit, but is also thought to be strongly attached
to the V0 complex. It may be involved in the coupling of
ATP degradation to H+ translocation.
Length = 105
Score = 31.4 bits (72), Expect = 0.75
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 1426 AEKE--KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE-KEGNEEVM--REDENK 1480
AEKE + V E +K + +KQ +EE ++E E+ +E E KE E R + K
Sbjct: 12 AEKEAAEIVNEARKRRAKRLKQAKEE--AEKEIEEYRAQREAEFKEFEAEHSGSRGELEK 69
Query: 1481 ENDDRKKGEIEDKEEDGKENK 1501
+ + + +I++ + +NK
Sbjct: 70 KIEKETEEKIDELKRSFNKNK 90
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes. This
domain is about 200 amino acids in length. This domain is
found associated with pfam00013, pfam01966. This domain
has a single completely conserved residue A that may be
functionally important.
Length = 201
Score = 32.9 bits (76), Expect = 0.77
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
K+ + E +K+ E KK K EE K + E E+E + +E + E+ + + E E
Sbjct: 37 KQIIEEAKKEAEALKKEALLEAK--EEIHKLRAEAERELKERRNELQRQEKRLLQKE--E 92
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
DRK +E KEE +E + + Q+++E
Sbjct: 93 TLDRKDESLEKKEESLEEKEKELAARQQQLEE 124
Score = 31.4 bits (72), Expect = 2.5
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 24/99 (24%)
Query: 1415 EALGREIKRALAEKEKKVEEKKK---AEEESVKQTEEE-----QKGKEETE--------- 1457
E L R+ +L +KE+ +EEK+K A ++ +++ EEE ++ ++E E
Sbjct: 92 ETLDRKD-ESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERISGLTAEE 150
Query: 1458 -KEEPIQEDEKEGNEEVM-----REDENKENDDRKKGEI 1490
KE ++E E E E E+E KE D+K EI
Sbjct: 151 AKEILLEEVEAELKHEAAKMIKEIEEEAKEEADKKAKEI 189
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 34.0 bits (78), Expect = 0.77
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 33/120 (27%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEE---------------------------TEKE 1459
+K KK ++KK+AE + +E++K + T K+
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKERAAEYTSEDLAGLKVGHKVEEFEEGEDVILTLKD 155
Query: 1460 EPIQEDEKEGNE---EVMREDE--NKENDDRKKGEIEDKEEDGKENKSSETSA-DQEIDE 1513
+ EDE EG+E + E E K + +KK D ++D K NK S S D+EI+
Sbjct: 156 TGVLEDEDEGDELENVELVEKEKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEG 215
Score = 33.6 bits (77), Expect = 1.0
Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE-------------EPIQEDEKE 1468
+R +K KK+ + A + + +++E+E++ E + + +EK
Sbjct: 353 RRLAQKKRKKLRPEDIARQIAEERSEDEEEAAENNDNGIVIDETSEFVRSLQKEPLEEKP 412
Query: 1469 GNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
N++ E+ + +D + E ED + D + + +E D+
Sbjct: 413 ENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDK 457
Score = 32.4 bits (74), Expect = 2.0
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 1424 ALAEKEK---KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
L EKEK +E KKK + ++ K ++ +E I E +K+ ++ + D
Sbjct: 172 ELVEKEKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEI-EGKKKKSDNLFTLDSGG 230
Query: 1481 ENDDRKKGEIEDKEEDGKENKSS--ETSADQEIDEVMTADETK 1521
DD + + ++ ++ K N S + S + + E
Sbjct: 231 STDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMV 273
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of proteins
contain a band 4.1 domain (pfam00373), at their amino
terminus. This family represents the rest of these
proteins.
Length = 244
Score = 33.2 bits (76), Expect = 0.80
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE-DEKEGNEEVMREDE 1478
E K E+E ++ EKK E E + EE+ E E+E E DE EV + +E
Sbjct: 39 EEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEAT--AEVAKLEE 96
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
+E +K+ E +++ +E + + A QE+ E A
Sbjct: 97 ERE---KKEAETRQLQQELREAQEAHERARQELLEAAAA 132
Score = 32.8 bits (75), Expect = 1.1
Identities = 17/97 (17%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 1419 REIKRALAEKEKKVEE-KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
+E++ + + E+ + +K+ EE E E+K K+E E+ + +++ E EE R +
Sbjct: 8 QELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLE 67
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
E + ++ +E + ++ + ++ +
Sbjct: 68 EEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAE 104
Score = 31.6 bits (72), Expect = 2.7
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEP----IQEDEKE 1468
L E + E+E+ E +A E K EE +K + ET + + QE +
Sbjct: 62 ENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHER 121
Query: 1469 GNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVM 1515
+E + E + E+ ++ E SAD E D M
Sbjct: 122 ARQE-LLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEASADLETDPDM 167
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 31.7 bits (72), Expect = 0.83
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 1417 LGREI----KRALAEKEK----KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
L RE+ KR L +K +V EK+K ++ +Q EEE+ + ++E E + + ++
Sbjct: 33 LHRELLFNQKRGLVLNQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQK 92
Query: 1469 GNEEVMREDENKENDDRK 1486
+ + + + E ++
Sbjct: 93 LEQLELEKAKEDEEQEQI 110
Score = 29.4 bits (66), Expect = 5.8
Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 1389 PDHHKFHGTILEKHRQVGNAV--PPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQT 1446
H H +L + G + P + L + + + +++K+ EE K+ + E ++
Sbjct: 28 RSHQNLHRELLFNQK-RGLVLNQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELEREL 86
Query: 1447 EEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
+ + E+ E E+ +++E+E E ++ N
Sbjct: 87 MKRAQKLEQLELEKAKEDEEQEQIPEFLKVKAN 119
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 33.2 bits (76), Expect = 0.85
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 1425 LAEK--EKKVEEKKKAEEESVKQTEEEQKGKEETEK--EEPIQEDEKEGNEEVM------ 1474
LA K +K++E++++ EE +K EE +E + EE I E +E EE
Sbjct: 115 LARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELEREN 174
Query: 1475 -----------REDENKENDDRKKGEIEDKEEDGKENK 1501
R E +EN+D + ++ K + +E
Sbjct: 175 IRAKIEAEARGRAKEERENEDINREMLKLKANEERETV 212
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 33.9 bits (78), Expect = 0.86
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 1432 VEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE---DEKEGNEEVMREDENKENDDRKKG 1488
VE + S+ Q + + + KEE + E + + E +EE+ R +E +E +
Sbjct: 178 VERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRD 237
Query: 1489 EIEDKEEDGKENKSSETSADQEIDEV---MTADETK 1521
E ++ E+ +E + + + EI+++ + E +
Sbjct: 238 EADEVLEEHEERREELETLEAEIEDLRETIAETERE 273
Score = 33.1 bits (76), Expect = 1.3
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 1415 EALGREIKRA--LAEKEKKVE---EKKKAEEESVKQTEEEQKGKEET--EKEEPIQEDEK 1467
E + ++RA L E E ++E E+++ EE + + E + K E E E E E
Sbjct: 492 EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEA 551
Query: 1468 EGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSS 1503
E E+ E +E + + E+ + E K
Sbjct: 552 EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587
Score = 30.8 bits (70), Expect = 7.3
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 1420 EIKRALAEKEKKVEEKKKAEE------------ESVKQT-EEEQKGKEETEKEEPIQEDE 1466
EI+R ++E+ E + +A+E E+++ E+ ++ ETE+E +E
Sbjct: 221 EIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEE 280
Query: 1467 KEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E + E E + +D + ++D + + E + E E
Sbjct: 281 VRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDE 324
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 34.0 bits (78), Expect = 0.86
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 1399 LEKHRQVGNAVPPPMGEALGRE-IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE 1457
LE + RE I+ E E+ + ++E +++ EE++ +E
Sbjct: 2561 LENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERL 2620
Query: 1458 KEEPIQEDEKEGNEEVMREDENKENDDRKKGEI 1490
E D+ N ++ N K+ +
Sbjct: 2621 NREVSGTDDTNKNHNTGHDESNYGRYSNKRNDY 2653
Score = 32.9 bits (75), Expect = 1.6
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG----NEEVM 1474
EIK L ++ K+ EK K EE ++ E + +E+ EE I ++E E+
Sbjct: 2556 NEIKE-LENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKA 2614
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSE 1504
E + + G + +
Sbjct: 2615 YSQERLNREVSGTDDTNKNHNTGHDESNYG 2644
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.9 bits (78), Expect = 0.86
Identities = 15/94 (15%), Positives = 36/94 (38%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
G K+ + ++ + K +++S K+T ++K K ++ Q
Sbjct: 1295 ESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLR 1354
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSS 1503
+ D + E+DD + + + E+D +
Sbjct: 1355 RPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 31.5 bits (72), Expect = 0.87
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE----DEKEGNEEVMREDENKEND 1483
KE+K EEK + EEE +K+ + ++ +E EK E I++ + +EE + + +
Sbjct: 1 KERKEEEKAQREEE-LKRLKNLKR-EEIEEKLEKIKKVAGLRGADLSEEDLADGDFDPEK 58
Query: 1484 -DRKKGEI--EDKEEDGKENKSSETSADQEIDE 1513
D + ++ +D E+ E + D++I +
Sbjct: 59 WDEEMAKLFGDDYYEEEDEEEKPTWDDDEDIGD 91
Score = 29.2 bits (66), Expect = 5.4
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEE-QKGKEETE------KEEPIQEDE--KEGNEEV 1473
R EK ++ EE K+ + ++ EE+ +K K+ EE + + + E +E
Sbjct: 3 RKEEEKAQREEELKRLKNLKREEIEEKLEKIKKVAGLRGADLSEEDLADGDFDPEKWDEE 62
Query: 1474 MR----EDENKENDDRKKGEIEDKEEDG 1497
M +D +E D+ +K +D E+ G
Sbjct: 63 MAKLFGDDYYEEEDEEEKPTWDDDEDIG 90
>gnl|CDD|204194 pfam09304, Cortex-I_coil, Cortexillin I, coiled coil. Members of
this family are predominantly found in the actin-bundling
protein Cortexillin I from Dictyostelium discoideum. They
adopt a structure consisting of an 18-heptad-repeat
alpha-helical coiled-coil, and are a prerequisite for the
assembly of Cortexillin I.
Length = 107
Score = 31.5 bits (71), Expect = 0.87
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EA E+ LA E +E +K ++EE KQ K++ E +K E+ +
Sbjct: 8 EASKNELANKLAGLENSLESEKASQEELAKQ-------KDQLRSLLASLEAQKAEREQRL 60
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
RE + K ++ K E+E + E++ S+T D+ I E+ A E KD
Sbjct: 61 RELQAKIDELLKNLELEKLAKMELESRLSKTEKDKAILELKLA-EAKD 107
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 34.0 bits (79), Expect = 0.88
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
EI + E EK +K++ +E+ K+ E K E +K++ D KEG ++ ++ +
Sbjct: 164 EIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDK 223
Query: 1480 KE 1481
+E
Sbjct: 224 EE 225
Score = 33.3 bits (77), Expect = 1.5
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE--KEEPIQEDEKEGNEEVMRED 1477
E+++ A+KE++ E+ K E++K+ E E+K + + KE P+Q +K EE+
Sbjct: 171 ELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMK 230
Query: 1478 ENKENDDRK--KGEIEDKE 1494
E E + R +G + E
Sbjct: 231 EINEEERRVVVEGYVFKVE 249
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 33.9 bits (77), Expect = 0.88
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
EIK + KE+ ++++K ES+++ +EE+ GK+E E+E+ I++ +
Sbjct: 1016 EIKDRIV-KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHD 1063
Score = 32.4 bits (73), Expect = 2.5
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE--------DEKEGNEEVMREDEN 1479
KV + + E ++ K++ ++ D EG EE++++DE
Sbjct: 542 DVSKVANESISSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEK 601
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+D + E E + SS T+ ++E + + + ++
Sbjct: 602 GNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETERE 644
Score = 32.4 bits (73), Expect = 2.7
Identities = 22/131 (16%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 1390 DHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEE 1449
+H K + E+ ++ +++ ++ +E+ +++ +K E ++ E
Sbjct: 554 NHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENS 613
Query: 1450 QKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKG-----EIEDKEEDGKENKSSE 1504
+ E + + + +E +EV E E +EN +K+ E+E++ + K++
Sbjct: 614 SDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWY 673
Query: 1505 TSADQEIDEVM 1515
T ++I+E +
Sbjct: 674 TEEKRKIEEQL 684
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are coiled-coil
proteins that are involved in pre-rRNA processing.
Length = 105
Score = 31.2 bits (71), Expect = 0.89
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE--DEKEGNEEVMREDENKENDDRK 1486
EK++E++ E++++K E+E K ++E E++ IQ + + EE R ++ K
Sbjct: 31 EKRMEKRL--EQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAK 88
Query: 1487 KGEIEDKEEDGKENK 1501
K E + E K NK
Sbjct: 89 KVERLKRRE--KRNK 101
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 33.4 bits (76), Expect = 0.96
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 1389 PDHHKFHGTILEKHRQVGNAVPPPMGEALGR--------EIKRALAEKEKKVEEKKKAEE 1440
DH + + T + ++ + P E EI + + K EE
Sbjct: 120 TDHSEDYETQQWEEEKLKHMKFPRRYEDNSEEKHSKRTNEIVEVFYNPQSQATLKSVFEE 179
Query: 1441 ESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKEN 1500
+ +QK + E+E+ Q+DE + N +D GE + E+G+E+
Sbjct: 180 VGKLDGQSKQKRERSDEREKSYQDDEDDT-----YRQNNIPYEDVVGGEDWNPIEEGEED 234
Query: 1501 KSSE 1504
++ E
Sbjct: 235 QTQE 238
Score = 30.7 bits (69), Expect = 7.8
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 12/114 (10%)
Query: 1420 EIKRALAEKEKKVEE---KKKAEEESVKQTEEEQKGKEETEKE--------EPIQEDEKE 1468
++ A + EE ++ ++++E +K ++ E + ++
Sbjct: 165 YNPQSQATLKSVFEEVGKLDGQSKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGED 224
Query: 1469 GNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
N E++ + + ++ E K + E DE E K
Sbjct: 225 WNPIEEGEEDQTQEEVKRSKERTHKGRSLPDESKRSGQLGLE-DEAEEEKEEKG 277
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 33.5 bits (77), Expect = 0.98
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK-EGNEEVMR 1475
L +EI +E+E KV +++ + E +K E+ +K++ +++ K EG ++
Sbjct: 34 LSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGF 93
Query: 1476 EDENKENDDRKKGEIEDKEED 1496
+ K +KK ED
Sbjct: 94 KTPKKSKKTKKKPPKPKPNED 114
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 33.4 bits (76), Expect = 1.00
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 1427 EKEKKVEEKKK--AEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
EK E ++K + S E++ EK E + +E E ED END
Sbjct: 339 EKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDH 398
Query: 1485 RKKGEIEDKEED 1496
K+ +D+ E+
Sbjct: 399 SKRICDDDELEN 410
Score = 32.3 bits (73), Expect = 2.7
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 1448 EEQKGKEETEKEEPIQEDEKEGNEEVMRED---ENKENDDRKKGEIEDKEEDGKENKSSE 1504
E+ G EE E+++ I + E+ + E E ++R E E +EE ++
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEND 397
Query: 1505 TSADQEIDE 1513
S D+
Sbjct: 398 HSKRICDDD 406
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific eukaryotic
initiation factor 4B proteins.
Length = 496
Score = 33.5 bits (76), Expect = 1.0
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 1412 PMGEALGREIKRALAEKEK---KVEEKKKAEEESVKQTEEEQKGKEE-------TEKEEP 1461
P G+A RE+ L EK K K++ + + +TEEE+ KEE +KEE
Sbjct: 331 PFGDAKPREV--VLEEKGKDWRKIDLELEHRRVDRPETEEEKNLKEEINLLRVDLKKEEA 388
Query: 1462 IQEDEKEGNEEVMRED------ENKENDDRKKGEIEDK 1493
I + K +E + + ++ +R E++DK
Sbjct: 389 IAPESKGSGQEQSHKGLSELIRQKEKELERLTVELDDK 426
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists of
several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 33.4 bits (76), Expect = 1.0
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 1415 EALGREIKRA-LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
L E+ + L K ++E ++KA + E + E + + ++E EK+ E
Sbjct: 71 IQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENE- 129
Query: 1474 MREDENKENDDRKKGEIE------DKEEDGKENKSSETSADQEIDE 1513
E E + + K + E +KE+ KE K S + ++ E
Sbjct: 130 AAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSE 175
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 32.2 bits (74), Expect = 1.0
Identities = 14/71 (19%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 1415 EALGREIKRALAEKEKKVE-EKKKAEEESVKQTEEEQKGKEE--TEKEEPIQEDEKEGNE 1471
E ++++ L +KEK+++ E++K ++++ +EE +K K++ +K++ +Q+ ++ +
Sbjct: 41 EKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQ 100
Query: 1472 EVMREDENKEN 1482
E+ ++ +
Sbjct: 101 ELQQKQQELLQ 111
>gnl|CDD|240067 cd04716, BAH_plantDCM_I, BAH, or Bromo Adjacent Homology domain,
first copy present in DNA
(Cytosine-5)-methyltransferases (DCM) from plants. DNA
methylation, or the covalent addition of a methyl group
to cytosine within the context of the CpG dinucleotide,
has profound effects on the genome. These effects
include transcriptional repression via inhibition of
transcription factor binding, the recruitment of
methyl-binding proteins and their associated chromatin
remodeling factors, X chromosome inactivation,
imprinting, and the suppression of parasitic DNA
sequences. DNA methylation is also essential for proper
embryonic development and is an important player in both
DNA repair and genome stability. BAH domains are found
in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 122
Score = 31.6 bits (72), Expect = 1.1
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 415 VGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELS---DPQE 471
+GD V+ P + K+ +E WF R ++TV+E + D +
Sbjct: 6 LGDDAYVQGG-EGEEPFICKITEFFEGTDGKT--YFTAQWFYRAEDTVIERQATNHDKKR 62
Query: 472 LFLLEACDDVSLNAVANLCQVKHFPISEN 500
+F E +D L+ + + ++ P +
Sbjct: 63 VFYSEIKNDNPLDCLISKVKILQVPPNVG 91
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 33.0 bits (75), Expect = 1.1
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 15/131 (11%)
Query: 1402 HRQVGNAVPPPMGEALGREIKRALAEKEKK----------VEEKKKAEEESVKQTEEEQK 1451
H+Q P P K+ L +E + E + +EE E
Sbjct: 150 HKQSDAPPPVPDMPK-----KQELPVEETLSTIHEDDASTLHEDDELDEEVTSYLNELDD 204
Query: 1452 GKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
+ +E++ E EV+ ++ END+ K +I + + K +K++ + E
Sbjct: 205 EVTSYFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIED 264
Query: 1512 DEVMTADETKD 1522
+ +E
Sbjct: 265 ESEDEYEEEAG 275
Score = 32.2 bits (73), Expect = 1.7
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
K E + +E+ ++ E + K T + E E E E EE E EN++
Sbjct: 231 KDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKG 284
Score = 31.0 bits (70), Expect = 5.0
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESV---KQTEEEQKGKEETEKE--------EP 1461
L E+ + E + E + E E + K E + + KE+ +E
Sbjct: 198 YLNELDDEVTSYFNDGENE-ENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKAN 256
Query: 1462 IQEDEKEGNEEVMREDENKENDDRKKGEIE 1491
E E E E E+E E + + E
Sbjct: 257 TNETEIEDESEDEYEEEAGEEQENEDKGEE 286
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 33.2 bits (75), Expect = 1.1
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 1415 EALGREIKRALAEKEKKVEEKK----KAEEESVKQTEEEQKGKEETEKEEPIQED--EKE 1468
E ++ R L E+++ +E++ K + + + ++E K+ + + I+ KE
Sbjct: 431 ETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKE 490
Query: 1469 GNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTAD 1518
E + +DE+ E D + K E K+N+ + A ++E D
Sbjct: 491 ELELIKADDEDDEQLDHFDMKSILKAEKFKKNRKLKKKA-SNLEEGFVFD 539
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino acids
in length. This family contains a P-loop motif suggesting
it is a nucleotide binding protein. It may be involved in
replication.
Length = 1198
Score = 33.5 bits (77), Expect = 1.1
Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE--DEKEGNEE 1472
++L +++ A+AE++++ E + + + +KQ E+Q+ E K++ + + +
Sbjct: 666 QSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQV 725
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKEN-KSSETSADQEIDE 1513
V E +N+ + IE K K + D+E+
Sbjct: 726 VEGELDNQL--AQLSAAIEAARTQAKARLKELKKQYDRELAS 765
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 31.8 bits (72), Expect = 1.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1459 EEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETS 1506
+EP + + +EG EE + N E GE EDKEE + +T+
Sbjct: 11 DEPSEPEIEEGAEEDSESNNNDEVKG-SIGENEDKEEQEPVQRPRKTT 57
>gnl|CDD|220504 pfam09987, DUF2226, Uncharacterized protein conserved in archaea
(DUF2226). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 252
Score = 32.6 bits (74), Expect = 1.2
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEK---EEPIQEDEKEGNEEVMREDENKENDDR 1485
E K+E K+ + +V + E + + E + +EP E E EE + E E++E +
Sbjct: 97 EDKIELIKEVNDNAVVEHLLETEVEVEGGECLLKEPFTPTEYEETEEEVEEPESREELLK 156
Query: 1486 KKGEIEDKEE 1495
K G E EE
Sbjct: 157 KLGIKEPDEE 166
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus protein
SURF-6 is shown to be a component of the nucleolar matrix
and has a strong binding capacity for nucleic acids.
Length = 206
Score = 32.3 bits (74), Expect = 1.2
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEP 1461
+ K+ ++ KK E+ +K+E E VK E + K K +
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAE 61
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is a
family of uncharacterized proteins.
Length = 449
Score = 33.0 bits (75), Expect = 1.3
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 1428 KEKKVEE-KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
KE + + K+AEEE++++ +++++ ++ + E+ +D+ + ED+ E+DD
Sbjct: 34 KENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDD------DEDDEDEDDDDS 87
Query: 1487 KGEIEDKEEDGKENKSSETSAD 1508
+ +DG E + AD
Sbjct: 88 TLHDDSSADDGNETDNEAGFAD 109
Score = 32.7 bits (74), Expect = 1.9
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 1458 KEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
KE I++ KE EE M E+++ E DD + ED+++D ++ + D + +
Sbjct: 34 KENAIRKLGKEAEEEAMEEEDDDEEDDDDDDD-EDEDDDDDDDDEDDEDEDDDDSTLHDD 92
Query: 1518 DETKD 1522
D
Sbjct: 93 SSADD 97
Score = 31.9 bits (72), Expect = 2.6
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 1443 VKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKS 1502
K+ + GKE E+ ++D++E +++ EDE+ ++DD + + ++ ++D +
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDD 92
Query: 1503 SETSADQEID-EVMTAD 1518
S E D E AD
Sbjct: 93 SSADDGNETDNEAGFAD 109
Score = 31.5 bits (71), Expect = 4.3
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 1451 KGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
K +E E+E +ED+ E +++ D++ E++D + ++ +ED ++ S+
Sbjct: 40 KLGKEAEEEAMEEEDDDEEDDD----DDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSA 95
Query: 1511 IDEVMTADETK 1521
D T +E
Sbjct: 96 DDGNETDNEAG 106
Score = 30.7 bits (69), Expect = 6.3
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
+K+ A ++ E +++A EE E++ +E E ++ +D+ E +E+ +D
Sbjct: 32 MKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDD--DDDDDEDDEDEDDDDSTL 89
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+D E E G + E+ E
Sbjct: 90 HDDSSADDGNETDNEAGFADSDDESDDGSE 119
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional.
Length = 197
Score = 32.3 bits (73), Expect = 1.3
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV-MREDENKEND 1483
++ KE+K E + EE + Q EE + + E E+ DEK N E + E + +E D
Sbjct: 1 MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKIANLEAQLAEAQTRERD 60
Query: 1484 D--RKKGEIED 1492
R K E+E+
Sbjct: 61 GILRVKAEMEN 71
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes the
bacterial secreted proteins PopB, PepB, YopB and EspD
which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 32.8 bits (75), Expect = 1.3
Identities = 10/32 (31%), Positives = 24/32 (75%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQK 1451
+++RA ++EKK EE ++ ++++++ EE +K
Sbjct: 23 QLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic phosphoprotein
1 (DMP1) gene has been mapped to human chromosome 4q21.
DMP1 is a bone and teeth specific protein initially
identified from mineralised dentin. DMP1 is primarily
localised in the nuclear compartment of undifferentiated
osteoblasts. In the nucleus, DMP1 acts as a
transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates mineralised
matrix formation extracellularly, at later stages of
osteoblast maturation. The DMP1 gene has been found to be
ectopically expressed in lung cancer although the reason
for this is unknown.
Length = 514
Score = 33.1 bits (75), Expect = 1.3
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE--EPIQEDEKEGNEEVMREDENKENDD 1484
E + ++ E +S + ++E Q E+ +E P QE+ E EEV+ E +N D
Sbjct: 306 EHSRSESQEDSEENQSQEDSQEVQDPSSESSQEADLPSQENSSESQEEVVSESRG-DNPD 364
Query: 1485 RKKGEIEDKEE-DGKENKSSETSADQE 1510
ED+E+ + E S +T + E
Sbjct: 365 NTTSHSEDQEDSESSEEDSLDTPSSSE 391
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 32.9 bits (75), Expect = 1.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPI 1462
E++ L EK V E+ EEE ++ EEE+ + E EEP+
Sbjct: 385 ELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPV 427
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion
protein; Provisional.
Length = 131
Score = 31.5 bits (71), Expect = 1.3
Identities = 14/75 (18%), Positives = 27/75 (36%)
Query: 1446 TEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSET 1505
TE + K E +E ED ++ + E +++EE + +
Sbjct: 53 TEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETAD 112
Query: 1506 SADQEIDEVMTADET 1520
AD E +E ++
Sbjct: 113 EADAEAEEADEEEDE 127
Score = 30.7 bits (69), Expect = 2.3
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 1417 LGREIK----RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
LGRE + EK A E+ ++ E ++ E E DE + EE
Sbjct: 43 LGREARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEE 102
Query: 1473 VMREDENKENDDRKKGEIEDKEED 1496
+ ++ + E D+EED
Sbjct: 103 TDEAVDETADEADAEAEEADEEED 126
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 31.1 bits (69), Expect = 1.3
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 1438 AEEESVKQTEEEQKGKEETEK--EEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEE 1495
+ E+ +K T E K + E EK E+P EDEK + E EN+D KK E + + E
Sbjct: 47 SNEDEMKTTHEHIKKENEDEKKPEKPENEDEK--------KPEKPENEDEKKPE-KPENE 97
Query: 1496 DGKENKSSETS 1506
D KE + S+ S
Sbjct: 98 DEKEFEDSDAS 108
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 32.3 bits (74), Expect = 1.3
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
+ + E+ K+ EEK A + + E E +E I E E E+M E E E
Sbjct: 69 QEIRERIKRAEEKLSAVK---DERELRALNIEIQIAKERINSLEDEL-AELMEEIEKLEK 124
Query: 1483 D-DRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ + K +E E++ E ++ EI E +K
Sbjct: 125 EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSK 164
Score = 32.0 bits (73), Expect = 2.1
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 1415 EALGREI---KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK---------EEPI 1462
AL EI K + E ++ E + E+ K+ E+ ++ E EK EE +
Sbjct: 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV 151
Query: 1463 QEDEKEGNEEVMREDENKENDDRK 1486
E +EG E + +E KE D +
Sbjct: 152 AEIREEGQELSSKREELKEKLDPE 175
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1, thyroid
transcription factor 1. In the lungs, the family binds
TTF-1 to form a complex which influences the expression
of the key lung surfactant protein-B (SP-B) and -C
(SP-C), the small hydrophobic surfactant proteins that
maintain surface tension in alveoli.
Length = 150
Score = 31.8 bits (72), Expect = 1.4
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
EK+KK++EKK E KQ + EQ+ KE ++++ +++ E ++ RE K
Sbjct: 68 FEKKKKLDEKK----EIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRK 118
>gnl|CDD|237561 PRK13923, PRK13923, putative spore coat protein regulator protein
YlbO; Provisional.
Length = 170
Score = 32.1 bits (73), Expect = 1.4
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 26/107 (24%)
Query: 1424 ALAEKEKKVEEKKKAE------EESVKQTEEEQKG-----------KEETEKEEPIQEDE 1466
LA+KE+K E +++ ++VK +E E+ K + +E
Sbjct: 65 KLAKKERK-ELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKL 123
Query: 1467 KEGNEEVMREDENKENDDRKKGEIED--------KEEDGKENKSSET 1505
N+ + +E E D R I + E++ K + E
Sbjct: 124 SWENQTLKQELAITEEDYRALIVIMNRARRMAILVEDERKSLAAFEM 170
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 33.1 bits (76), Expect = 1.4
Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
E+ K +E+ + E + + +++ K P Q + ++ NE D + R E+
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRK--PRQNNRRDRNERRDTRDNRTRREGR-----EN 635
Query: 1493 KEED--GKENKSSETSADQEIDEVMTADETK 1521
+EE+ + +T+ +E + ++ +
Sbjct: 636 REENRRNRRQAQQQTAETRESQQAEVTEKAR 666
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 32.5 bits (75), Expect = 1.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1424 ALAEKEKKVEEKKKAEE--ESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
ALA+K+ EE K+ EEE++ +EE E+EEP +E+ G
Sbjct: 277 ALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 31.8 bits (73), Expect = 3.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE 1457
+AL E+K L+ + + +++ EEE EEE++ E E
Sbjct: 282 DALDEELKEVLSAQAQAAAAEEEEEEEE----EEEEEEPSEEE 320
Score = 31.4 bits (72), Expect = 3.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE 1464
K AL E+ K+V + + ++ EEE++ +EE EE
Sbjct: 281 KDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAA 323
Score = 30.6 bits (70), Expect = 6.0
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+ L + + +ALA ++ EE + + Q E E+EE +E+E+E +EE
Sbjct: 260 ADDILSKAVAQALALAAALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.
Length = 183
Score = 31.8 bits (73), Expect = 1.5
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 794 RPLRCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAAAAFKMN 837
R L++FAG+G L SRG A S +E D A A K N
Sbjct: 43 GGARVLDLFAGSGALGLEALSRG------AASVVFVEKDKKAVATLKEN 85
Score = 31.5 bits (72), Expect = 1.9
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 885 RPLRCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAATAFKMN 928
R L++FAG+G L SRG A S +E D A K N
Sbjct: 43 GGARVLDLFAGSGALGLEALSRG------AASVVFVEKDKKAVATLKEN 85
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 33.1 bits (76), Expect = 1.5
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E+L K L + KK+ E K EEE +++ +E++ + ++ E E+ E
Sbjct: 162 ESLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLE----EELLARLESKE 217
Query: 1475 REDENKENDD--RKKGEIEDKEED 1496
E + + R+K E+ K E+
Sbjct: 218 AALEKQLRLEFEREKEELRKKYEE 241
Score = 30.4 bits (69), Expect = 8.7
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 1420 EIKRALAEK----EKKVEEKKKAEEESVKQTEEEQKGKE-ETEKEEPIQEDEKEGNEEVM 1474
E++RAL EK K+EE+ A ES + E+Q E E EKEE ++ E++ +E+
Sbjct: 189 ELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELE 248
Query: 1475 REDE 1478
R+ E
Sbjct: 249 RQAE 252
Score = 30.4 bits (69), Expect = 8.9
Identities = 16/86 (18%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 1415 EALGREI----KRALAEKEKKVEEKKKAEEESV-KQTEEEQKGKEETEKEEPIQEDEKEG 1469
+ L +++ E E+ ++EK++ + ++ + KE +++ E E+E
Sbjct: 173 DQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFERE- 231
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEE 1495
+E +R K+ +++ + E+E + E
Sbjct: 232 -KEELR----KKYEEKLRQELERQAE 252
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 32.8 bits (76), Expect = 1.5
Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
GE RE+ + + + E +E+++ EE E ++ + DE E E+V
Sbjct: 162 GERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEE-EEDENDDSLAADESELPEKV 220
Query: 1474 MREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE--IDEVMT 1516
+ + + +K + ++K+ +G+ + + + +E +E+ +
Sbjct: 221 LEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKS 265
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 33.1 bits (76), Expect = 1.5
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK--EN 1482
EKE+K K++ K ++E+K K+E EK E + E + E+K
Sbjct: 554 QREKEEKEALKEQKRLR--KLKKQEEKKKKELEKLEKAKIPP----AEFFKRQEDKYSAF 607
Query: 1483 DDRKKGEIEDKEEDGKENKSSE 1504
D+ + + DG+E E
Sbjct: 608 DETG---LPTHDADGEEISKKE 626
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and
chromosome partitioning].
Length = 420
Score = 32.8 bits (75), Expect = 1.5
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 18/108 (16%)
Query: 1415 EALGREIKRALAEK-------EKKVEEKKKAEEESVKQTEEEQK-----GKEETEKEEPI 1462
A E+ L+E+ + +EE+KK + + +QK E+ + I
Sbjct: 181 AAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240
Query: 1463 QEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E + RE + + + K + E
Sbjct: 241 ASAEAAAAKA--RE----AAAAAEAAAARARAAEAKRTGETYKPTAPE 282
Score = 30.5 bits (69), Expect = 7.2
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 1416 ALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
A+ EI AE + E++ + + + EE +K + E + D+K +
Sbjct: 175 AVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSE--LSADQK-------K 225
Query: 1476 EDENKENDDRKKGEIEDKEE 1495
+E + N+ R K EI E
Sbjct: 226 LEELRANESRLKNEIASAEA 245
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This family
includes the radial spoke head proteins RSP4 and RSP6
from Chlamydomonas reinhardtii, and several eukaryotic
homologues, including mammalian RSHL1, the protein
product of a familial ciliary dyskinesia candidate gene.
Length = 481
Score = 32.7 bits (75), Expect = 1.6
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE--------PIQEDEKEGNE 1471
+ V ++K EEE + EEE++ +E E E PI ED N+
Sbjct: 338 RCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPLPND 389
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 30.1 bits (68), Expect = 1.6
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1455 ETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E E I+E++ E VM E E E+DD + +D ++D K++K + D E DE
Sbjct: 25 EARTEALIEEEKVEIARSVMIEGEEPEDDD---DDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This family
consists of several proteins of unknown function Raphanus
sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 31.3 bits (70), Expect = 1.8
Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 1454 EETEKEEPIQEDEKEGNEEVMR---EDENKENDDRKKGEIEDKEE 1495
E T+K PI + E EG EE E E KE KGEIE KEE
Sbjct: 84 EVTKKVSPIIKGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEE 128
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside from
the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins, so
do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 32.7 bits (75), Expect = 1.8
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 1444 KQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSS 1503
+ +++K E + EEP + EK E E G ++KE D +E
Sbjct: 316 QPQGKDEK-DLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHP-TPGNDDEKEPDPQEEADG 373
Query: 1504 ETSADQEIDEV 1514
+ S+ ++
Sbjct: 374 QGSSTDPAGDI 384
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 32.6 bits (74), Expect = 1.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKG-KEE-TEKEEPIQEDEKEGNEEVMREDENKEN 1482
EK K ++ KK E S++ +E K K E K+E I E+++RE++ E+
Sbjct: 69 EKRKILQSIKKEENSSIEDVLKEVKSLKNELAHKKEEINHPTILKIEDILRENDFSES 126
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell motility
and secretion].
Length = 214
Score = 32.1 bits (73), Expect = 1.8
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 1424 ALAEKEKKVEE----KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
AL E ++K+EE KK+++E V++ E + +E E + E+E +E+ E
Sbjct: 19 ALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEK 78
Query: 1480 KENDDRKKGEIEDKEEDGK 1498
+ + E++E+ K
Sbjct: 79 LKEPAQMSSTSEEEEKKAK 97
Score = 30.6 bits (69), Expect = 5.1
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 1399 LEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK 1458
LE+ + V E L +I+ + +K +E + E +QT+E ++
Sbjct: 5 LEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSI 64
Query: 1459 EEPIQEDEKEGNEEVMREDE 1478
EE I E EK E ++E
Sbjct: 65 EEEISEKEKV-MSEKLKEPA 83
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 31.6 bits (72), Expect = 1.9
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 1425 LAEKEKKVEEKKKAEEESVK--QTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
L E EK +++ + EE + E ++ ++ E+ + E+ E ++ +E
Sbjct: 1 LMELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERE 59
Score = 30.4 bits (69), Expect = 5.8
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+ IK+ L E E++ EE + E ++ +EE K + E EE +++ EKE E R
Sbjct: 6 KLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIIS 65
Query: 1479 NKENDDRKKGEIEDKEE 1495
+ + R+K +E KEE
Sbjct: 66 SALLEARRK-LLEAKEE 81
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this family
are typically between 146 and 237 amino acids in length.
There are two conserved sequence motifs: QYGP and PKLY.
Length = 155
Score = 31.3 bits (71), Expect = 1.9
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE 1464
+++ E K +E K+ + K ++E K EP +
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically binds
the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 30.5 bits (69), Expect = 2.0
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1461 PIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
++++ E EE E+E E ++++ E EE KE E ++E D+ MT +E
Sbjct: 29 SVKDEIAELTEEQGEEEEKNEVEEKQAVE----EEANKEGVVEEEEVEEEEDKEMTLEE 83
Score = 29.7 bits (67), Expect = 3.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+ E +++ EEE + EE+Q +EE KE ++E+E E E+
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEED 76
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in this
family are approximately 90 amino acids in length. There
are two completely conserved L residues that may be
functionally important.
Length = 70
Score = 29.6 bits (67), Expect = 2.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 1432 VEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
+ K KA+++ +K EE+++ +EE K E +E EK
Sbjct: 18 LLAKLKAKKKELKAEEEKREEEEEARKREERKEREKN 54
Score = 28.8 bits (65), Expect = 3.3
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE 1455
K+ L +E+K EE+++A + ++ E+ K EE
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEE 59
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 32.5 bits (74), Expect = 2.1
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E +K K E K +E ++ EE +K +EE E+E + + +E + R E
Sbjct: 52 ERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQE--FKSERQELKQIESRLTER 109
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ DRK + KE+ + + S T + IDE
Sbjct: 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDE 143
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 32.1 bits (73), Expect = 2.1
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 1452 GKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
G + E EP D+ GN + ED+ + R + E++E + E E ++E
Sbjct: 41 GDDAIELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEE-DEEEEGEEES 99
Query: 1512 DEVMTADET 1520
+E +T
Sbjct: 100 EEFEPLGDT 108
Score = 31.3 bits (71), Expect = 4.1
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
E ++ E + EE + +EE++G+EE+E+ EP+ + +E E + +E++E
Sbjct: 72 EVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEE 124
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 32.1 bits (73), Expect = 2.1
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 1427 EKEKKVEEK--KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
+K K +EE K++ + + Q + + + +K + E++ + + + + E E KE+++
Sbjct: 213 DKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSD--DEEDDDQDGDYVEEKELKEDEE 270
Query: 1485 RKKGEIEDKEEDGKE 1499
++ E E++EED E
Sbjct: 271 EEETEEEEEEEDEDE 285
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 32.0 bits (73), Expect = 2.2
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 1420 EIKRALAEKEKKVEE-KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
E + + ++ +E +K+A+E + E +K E E+ +Q + +E E+ ++
Sbjct: 190 EYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE-LEKKIKALR 248
Query: 1479 NKENDDRKKGEIEDKEEDGKE 1499
KE +++ + E+ +E +E
Sbjct: 249 AKEKAAKRREKREELKERAEE 269
Score = 30.8 bits (70), Expect = 5.0
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPI-----------QEDEK 1467
RE+ + + E K++E+ KKA EE+ K E + + E +K I QE +
Sbjct: 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHE 193
Query: 1468 EGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
E + DE ++ D E + + E + E+ E+
Sbjct: 194 EMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKK 243
Score = 30.8 bits (70), Expect = 5.6
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
R++ E+++E +K ++ SV EEE++ ++ ++ ED K+ EE + E K
Sbjct: 106 GRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKA 165
Query: 1482 NDDRKKGEIEDKEEDGKE--NKSSE-----TSADQEIDEV 1514
D K + + E +E N++ E +E DE+
Sbjct: 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADEL 205
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 32.0 bits (73), Expect = 2.3
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 1428 KEKKVEEKKKAEEE---SVKQTEEEQKG-KEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
KE K+E + + E S KQ + ++K K EK++ QE EKE E +R+ KE
Sbjct: 77 KEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQK--QEREKEREEAELRQRLAKEKY 134
Query: 1484 D---RKKGEIEDKEEDGKENKSSETSA 1507
+ R+K + K+ K K + SA
Sbjct: 135 EEWCRQKAQQAAKQRTPKHKKEAAESA 161
Score = 30.5 bits (69), Expect = 6.9
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 1399 LEKHRQVGNAVPPPMGEALGREIKRALAEKEKKV----EEKKKAEEESVKQTEEEQKGKE 1454
KH++ + + E+ KK E KK +++ ++ E ++ K+
Sbjct: 150 TPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKK 209
Query: 1455 ETEKEEPIQEDEK 1467
+ E+EE Q+ E+
Sbjct: 210 QQEEEERKQKAEE 222
>gnl|CDD|184060 PRK13453, PRK13453, F0F1 ATP synthase subunit B; Provisional.
Length = 173
Score = 31.4 bits (71), Expect = 2.3
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEE---SVKQTEEE-QKGKEETEKEEPIQEDE--KEGNEE 1472
R+I R + + E+ +K EEE +K+T+EE QK E+ + + Q+++ E N
Sbjct: 52 RDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVR 111
Query: 1473 V--MREDENKENDDRKKGEIED 1492
M E E + +K+ I D
Sbjct: 112 ANGMIETAQSEINSQKERAIAD 133
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 32.7 bits (74), Expect = 2.4
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED-----ENKE 1481
++++ ++ + ++E ++ EEE KG ++ ++E+ ED EV + D E
Sbjct: 157 DEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTDCFKFIEAGA 216
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
DD E E K + + ++D E+D+ + + K+
Sbjct: 217 GDDVFDKIDEAFETTEKGDGAVLQASDDEVDKFASNNTNKE 257
Score = 31.6 bits (71), Expect = 5.0
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
R R LAE++ + +++ + E++ +++ E+EE +E + +E+ EDE
Sbjct: 134 RRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDE--EDE 191
Query: 1479 NKENDDRKKGEIEDKE 1494
E+ +K E++ +
Sbjct: 192 GGEDFTYEKSEVDKTD 207
Score = 30.8 bits (69), Expect = 8.0
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 1438 AEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDG 1497
AEE+ + +E E E+ +DE++ EE E+E K DD ED+E++G
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDED--DDDEEDDEEEEEEEEEIKGFDD------EDEEDEG 192
Query: 1498 KENKSSETSADQEID 1512
E+ + E S + D
Sbjct: 193 GEDFTYEKSEVDKTD 207
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins. OPA3
deficiency causes type III 3-methylglutaconic aciduria
(MGA) in humans. This disease manifests with early
bilateral optic atrophy, spasticity, extrapyramidal
dysfunction, ataxia, and cognitive deficits, but normal
longevity.
Length = 134
Score = 30.7 bits (70), Expect = 2.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
E +R + KE K EE+ + E E ++ E + + E +K
Sbjct: 95 EYQRQ-SRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 31.9 bits (73), Expect = 2.4
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 13/89 (14%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
+ +K+KK ++K K + E TE + +
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQV-------------GEA 224
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+KK I E + KS TS +E
Sbjct: 225 KKLKKKRSIAPDNEKSEVYKSLFTSHKKE 253
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 31.6 bits (71), Expect = 2.4
Identities = 23/106 (21%), Positives = 45/106 (42%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
+G ++ A++ K+ + + AE E +K+ EE ++ + E +++ +E E+
Sbjct: 1 MGNYCRKNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEEN 60
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+E K ++ E+K D K E S E D D
Sbjct: 61 EEQKPKEEIDYPIQENKSFDEKNLDDLERSNSDIYSESHKYDNASD 106
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 31.9 bits (73), Expect = 2.4
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK 1480
+K L++ +KVEEK + EEE EE++ +E+ E+++ EK G + + E K
Sbjct: 5 LKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKK-----EKPGFFDKAKITEIK 59
Query: 1481 END 1483
E D
Sbjct: 60 EKD 62
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 32.2 bits (73), Expect = 2.5
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 1422 KRALAEKEKKVEE---KKKAEEESV-KQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
+R + KKV + E + T + K KE+ K + EE E
Sbjct: 22 RRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVDSSSSEEEEDGSES 81
Query: 1478 ENKENDDRKKGEIEDK 1493
+K N + KK +
Sbjct: 82 ISKLNVNSKKISLNQV 97
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 31.3 bits (71), Expect = 2.5
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 1414 GEALGREIKRALAEKEKKVEE--KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE 1471
L + A +E EK A++ Q E +K K+ E E ++ EK+
Sbjct: 43 AAELAEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKK--- 99
Query: 1472 EVMREDENKENDDRKKG-EIEDKEEDGKENKSSETSADQEIDEVMT 1516
+ E K+ ++ ++G + EDGK K ++
Sbjct: 100 ----KAELKDLEEEREGILRSKQAEDGKLVKIYSKMKPDAAAAILE 141
>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein. Proteins in
this family bind to fibrinogen. Members of this family
includes the fibrinogen receptor, FbsA, which mediates
platelet aggregation.
Length = 393
Score = 32.1 bits (72), Expect = 2.5
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 1392 HKFHGTILEK------HRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQ 1445
+K G +LE+ +R GN + +A + L +++ E + + +Q
Sbjct: 120 NKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQ 179
Query: 1446 TEEEQKGKEET-EKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKS 1502
+ E K + E+ + E++ +GN + E ++ ++R +G + ++ + ENKS
Sbjct: 180 RDVENKSQGNVLERRQRDVENKSQGN---VLERRQRDAENRSQGNVLERRQRDVENKS 234
Score = 30.6 bits (68), Expect = 7.6
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 1392 HKFHGTILEK------HRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQ 1445
+K G +LE+ ++ GN + +A R L +++ VE K + +Q
Sbjct: 184 NKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQ 243
Query: 1446 TEEEQKGKEET-EKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKS 1502
+ E K + E+ + E+ +GN + E ++ +++ +G + ++ + ENKS
Sbjct: 244 RDVENKSQGNVLERRQRDAENRSQGN---VLERRQRDVENKSQGNVLERRQRDAENKS 298
Score = 30.2 bits (67), Expect = 8.3
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 1365 QGRVLHPEQHRVVSVRECARSQG-------FPDHHKFHGTILEK------HRQVGNAVPP 1411
QG VL Q + RSQG ++ G +LE+ +R GN +
Sbjct: 43 QGNVLERRQRDAEN-----RSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLER 97
Query: 1412 PMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEET-EKEEPIQEDEKEGN 1470
+ + L +++ VE K + +Q + E + + E+ + E++ +GN
Sbjct: 98 RQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGN 157
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKS 1502
+ E ++ ++R +G + ++ + ENKS
Sbjct: 158 ---VLERRQRDAENRSQGNVLERRQRDVENKS 186
>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 31.7 bits (72), Expect = 2.5
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 932 CTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAF 991
C F + K+ Q+VI + L KG V M+C G G + F +R Y+
Sbjct: 89 CGAFNTNIIKLAQKVIHEDYAA-----LHAKGGVSMICAGT-----RGFDFFRKRGYNIV 138
Query: 992 K 992
K
Sbjct: 139 K 139
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 31.0 bits (71), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1415 EALGREIKRA-LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK 1458
+ L ++ A L +KE K EK + + E K E++K K+E K
Sbjct: 52 KDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
>gnl|CDD|152901 pfam12467, CMV_1a, Cucumber mosaic virus 1a protein. This domain
family is found in viruses, and is typically between 156
and 171 amino acids in length. The family is found in
association with pfam01443, pfam01660. 1a protein is the
major virulence factor of the cucumber mosaic virus
(CMV). The Ns strain of CMV causes necrotic lesions to
Nicotiana spp. while other strains cause systemic mosaic.
The determinant of the pathogenesis of these different
strains is the specific amino acid residue at the 461
residue of the 1a protein.
Length = 175
Score = 31.4 bits (71), Expect = 2.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE-----KEEPIQEDEKEG 1469
+ + A+ + + EKKK EE+++Q +E EE E E +++D K
Sbjct: 62 ADVLKRAAWAVEDGKTLRAEKKKKLEEALQQPVQEDSVSEEFEDAPDAPSESVRDDVKPE 121
Query: 1470 NEEV 1473
N V
Sbjct: 122 NPVV 125
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in humans
and is thought to affect keratinocyte proliferation.
Length = 739
Score = 32.3 bits (73), Expect = 2.6
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 1408 AVPPPMGEALGREIKRALAEKE---KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE 1464
AV G A ++ ALA E K +EE + E E ++ +EQ E +
Sbjct: 107 AVAEKAGRAEAEGLRAALAGAEEVRKNLEEGGQQELEEAQRLHQEQLSSLTQAHLEALSS 166
Query: 1465 --DEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ EG E+ ++ E + + K E D + S+T + E
Sbjct: 167 LRSKAEGLEKSLQSLETRRAGEAKALAAAQAEADTLREQLSKTQEELE 214
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is involved
in determining the site of synaptic vesicle fusion. The
C-terminus is a PDZ-binding motif that binds directly to
RIM (a small G protein Rab-3A effector). The family also
contains four coiled-coil domains.
Length = 774
Score = 32.3 bits (73), Expect = 2.8
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE----PIQEDEKEGN 1470
+AL E++R KK + A+EE E + ++ EK E +Q+ +
Sbjct: 346 DALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQ 405
Query: 1471 EEVMRED-ENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E R++ KE +R + D D K + A++E
Sbjct: 406 ETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKE 446
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 31.9 bits (72), Expect = 2.9
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
R +KRA +K V E + EE + E ++ K+ P + K E+E
Sbjct: 75 RSVKRA---TKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEE 131
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
E RK+ +++ +ED ++ S +D E E +T+ E +
Sbjct: 132 KTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENE 174
Score = 30.8 bits (69), Expect = 7.8
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 1424 ALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
AL ++ KK + + + + EE+K E + +V + DE+ E+
Sbjct: 105 ALDKESKKTPRRTRRKAAAASSDVEEEK-----------TEKKVRKRRKVKKMDEDVEDQ 153
Query: 1484 DRKKGEIEDKEEDGKENKSSETSADQEID 1512
+ E+ D EE + S E +++E+D
Sbjct: 154 GSES-EVSDVEE-SEFVTSLENESEEELD 180
>gnl|CDD|131353 TIGR02300, FYDLN_acid, TIGR02300 family protein. Members of this
family are bacterial proteins with a conserved motif
[KR]FYDLN, sometimes flanked by a pair of CXXC motifs,
followed by a long region of low complexity sequence in
which roughly half the residues are Asp and Glu,
including multiple runs of five or more acidic residues.
The function of members of this family is unknown.
Length = 129
Score = 30.3 bits (68), Expect = 3.1
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 1408 AVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK 1467
AV P GE + AL + + +++K E +VK+ + E E E E+
Sbjct: 27 AVSPYTGEQF--PPEEALKSRRVRADDEK--EAVAVKEVDPEIDEAAELVSLEEADEEVD 82
Query: 1468 EGN-----EEVMREDENKENDDRKKGEIEDKEED 1496
G + + EDE+ +DD +ED+E+D
Sbjct: 83 PGAPTPAGGDDLAEDEDIADDDDDVTFLEDEEDD 116
>gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family. This
model represents a family of uncharacterized bacterial
proteins. Members are present in nearly every complete
bacterial genome, always in a single copy. PSI-BLAST
analysis shows homology to several families of
SAM-dependent methyltransferases, including ribosomal
RNA adenine dimethylases [Protein synthesis, tRNA and
rRNA base modification].
Length = 190
Score = 31.2 bits (71), Expect = 3.1
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 882 SIARP----LRCLEVFAGAGG-----LSRGLDKSGVARSTWAIEFDSAAATAFKMN 928
+I RP L++FAG+G LSRG A S +E D A K N
Sbjct: 43 NILRPDIVGAHFLDLFAGSGALGLEALSRG------AASAVFVEQDRKVAQTLKEN 92
Score = 30.8 bits (70), Expect = 3.9
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 791 SIARP----LRCLEVFAGAGG-----LSRGLDKSGVARSTWAIEFDSAAAAAFKMN 837
+I RP L++FAG+G LSRG A S +E D A K N
Sbjct: 43 NILRPDIVGAHFLDLFAGSGALGLEALSRG------AASAVFVEQDRKVAQTLKEN 92
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 32.0 bits (73), Expect = 3.2
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQED-----EKEGNEEVMREDENKENDD 1484
KK+ +KKK S ++ E + + + EKE Q + EK+GN E + ++ K +
Sbjct: 1500 KKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEK---N 1556
Query: 1485 RKKGEIEDKEEDGKENKSSETSADQEID 1512
++ E + K K +++ + E+D
Sbjct: 1557 IEEDYAESDIKKRKNKKQYKSNTEAELD 1584
Score = 30.8 bits (70), Expect = 7.9
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED-------ENKEN 1482
KK++E + EE V+ EE E + + ++++ EG+ E ED E +E+
Sbjct: 240 KKLKETSETEER-VESEEETDVEIETASETKGTKQEQ-EGSTE---EDPSPSLFSEERED 294
Query: 1483 DDRKKGEIEDKEEDGKENKS 1502
D K E E+ +GKE
Sbjct: 295 PD-KIDETEEIRVNGKEKIK 313
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is part
of complex B but is not, however, required for the core
subunits to stay associated. This protein is known as
Huntington-interacting protein-1 in humans.
Length = 355
Score = 31.6 bits (72), Expect = 3.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 1450 QKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQ 1509
+ EE E+E ++D + EEV E E +E DD + +E K +S T +
Sbjct: 125 KYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDD----DEGTQETKYKRGDTSLTPQAK 180
Query: 1510 EIDEVMTADET 1520
++ E +
Sbjct: 181 DVLESLIDAAE 191
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 31.6 bits (72), Expect = 3.6
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN--------- 1470
+IK+ +E EKK+E++ K E +++ E+E EE EK +E ++G
Sbjct: 279 KIKQLASELEKKLEKELKKLENKLEKQEDE---LEELEKAA--EELRQKGELLYANLQLI 333
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
EE ++ + ++ +IE ++K+ +A +
Sbjct: 334 EEGLKSVRLADFYGNEEIKIE-----LDKSKTPSENAQRYF 369
Score = 30.4 bits (69), Expect = 8.4
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 1406 GNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQED 1465
+ VP L + AL EK ++ ++ K+ E K+ E+E K E ++ QED
Sbjct: 252 LDVVPLKAYADLEKLFNEALDEKFER-DKIKQLASELEKKLEKELKKLENKLEK---QED 307
Query: 1466 EKEGNEEVMREDENKENDDRKKGEI 1490
E E E E + R+KGE+
Sbjct: 308 ELE-------ELEKAAEELRQKGEL 325
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like GTP-binding
Golgi protein, and contribute to Golgi organisation in
animal and plant cells. The Rab6-binding domain appears
to be the same region as this C-terminal family.
Length = 121
Score = 29.8 bits (68), Expect = 3.6
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 1415 EALGREIKRALAEK-------EKKVEEKKKAEEESVKQTEEEQKGKEE-TEKEEPIQE-D 1465
E L ++R E + E+ +A +E VK TEE ++ +E E EE +E +
Sbjct: 20 ERLSSTLRRLEGELASLKDELARLEAERDEARQEIVKLTEENEELRELKKEIEELEKELE 79
Query: 1466 EKEGNEEVMRE 1476
+ E E E
Sbjct: 80 DLEQRYETTLE 90
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 31.0 bits (70), Expect = 3.7
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEN 1482
L++KE + EEK A +E + ++E K E E +E + KE +E+ +R + EN
Sbjct: 12 LSQKEPESEEKACACKEQQGEEKQEASEK-EGEIKEDFELKYKEMHEKYLRVHADFEN 68
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the synaptonemal
complex. Synaptonemal complexes are structures that are
formed between homologous chromosomes during meiotic
prophase.
Length = 787
Score = 31.6 bits (71), Expect = 3.7
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGK-EETEKEEPIQEDEKEGNEEVMREDENKEND 1483
L EKE + ++ ++ E Q +E K K +++E+ E E E+ M+ ENK N+
Sbjct: 539 LEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN 598
Query: 1484 DRKKGEIEDK--EEDGKENKSSETSADQE 1510
+K+ E ++K EE +ENK+ + E
Sbjct: 599 LKKQIENKNKNIEELHQENKALKKKGSAE 627
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This family
consists of several bovine specific leukaemia virus
receptors which are thought to function as transmembrane
proteins, although their exact function is unknown.
Length = 561
Score = 31.6 bits (71), Expect = 3.7
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 1416 ALGREIKRALAEKEK-------KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
AL ++ + LA+ EK E K E+ V E++ K ++ EK+E +E +K+
Sbjct: 158 ALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKD 217
Query: 1469 GNEEVMR-EDENKENDDRKKGEIEDKEED--GKENKSSETSADQEIDEVMTADET 1520
+EV + DD E D N S T+ D E DE A+
Sbjct: 218 KKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAE 272
>gnl|CDD|132842 cd07203, cPLA2_Fungal_PLB, Fungal Phospholipase B-like; cPLA2
GrpIVA homologs; catalytic domain. Fungal phospholipase
B are Group IV cPLA2 homologs. Aspergillus PLA2 is
Ca-dependent, yet it does not contain a C2 domain. PLB
deacylates both sn-1 and sn-2 chains of phospholipids
and are abundantly expressed in fungi. It shows
lysophospholipase (lysoPL) and transacylase activities.
The active site residues from cPLA2 are also conserved
in PLB. Like cPLA2, PLB also has a consensus sequence of
Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu =
nucleophile). It includes PLB1 from Schizosaccharomyces
pombe, PLB2 from Candida glabrata, and PLB3 from
Saccharomyces cerevisiae. PLB1, PLB2, and PLB3 show PLB
and lysoPL activities; PLB3 is specific for
phosphoinositides.
Length = 552
Score = 31.6 bits (72), Expect = 3.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 99 ITSEDPTPEGGIPVKEVG-------PINGWCINGYD 127
S DP+ P + +G P NG C+NG+D
Sbjct: 248 FGSWDPSLNSFTPTEYLGTNVSNGVPPNGSCVNGFD 283
>gnl|CDD|130844 TIGR01784, T_den_put_tspse, conserved hypothetical protein (putative
transposase or invertase). Several lines of evidence
suggest that members of this family (loaded as a fragment
mode model to find part-length matches) are associated
with transposition, inversion, or recombination. Members
are found in small numbers of genomes, but in large copy
numbers in many of those species, including over 30 full
length and fragmentary members in Treponema denticola.
The strongest similarities are usually within rather than
between species. PSI-BLAST shows similarity to proteins
designated as possible transposases, DNA invertases
(resolvases), and recombinases. In the oral pathogenic
spirochete Treponema denticola, full-length members are
often found near transporters or other membrane proteins.
This family includes members of the putative transposase
family pfam04754.
Length = 270
Score = 31.2 bits (71), Expect = 4.0
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 1436 KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEE 1495
+KAEEE +K K E E+ E D EE ++E E +G +E K E
Sbjct: 190 QKAEEE-IKTLLLSSKELELYEQREKYMTDAISAEEE--GKEEGIE-----EGILEAKLE 241
Query: 1496 DGKENKSSETSADQEIDEVMTADE 1519
K+ +++V A
Sbjct: 242 TAKKLL----KNGLTLEQVAEATG 261
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 31.6 bits (71), Expect = 4.0
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 1424 ALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
A EK+KK+ E KK E EE+ E + + + + EE + + +
Sbjct: 140 AAEEKKKKLLELKKTRER------EERLYSERHIELQR--FKDYKELEESEQGLQEEYTP 191
Query: 1484 DRKKGEIEDKEEDGKENKSSETSA 1507
+ +ED + + +
Sbjct: 192 SYAEEAVEDISRTDDFAELYDFNQ 215
>gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription].
Length = 808
Score = 31.4 bits (72), Expect = 4.1
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 1421 IKRALAEKEKKVEEKK-----KAEEESVKQTEEEQKG-KEETEKEEPIQEDEKEGNEEVM 1474
+ K+ + E++K +AE +K + ++G TE+ ++ E G E +
Sbjct: 585 FGIGIGRKDIEAEDEKDEIVIEAEGSVLKLILQYEEGDLTRTERNNIVEIIEVLGIEALR 644
Query: 1475 REDEN 1479
Sbjct: 645 NAIIE 649
>gnl|CDD|191748 pfam07464, ApoLp-III, Apolipophorin-III precursor (apoLp-III). This
family consists of several insect apolipoprotein-III
sequences. Exchangeable apolipoproteins constitute a
functionally important family of proteins that play
critical roles in lipid transport and lipoprotein
metabolism. Apolipophorin III (apoLp-III) is a
prototypical exchangeable apolipoprotein found in many
insect species that functions in transport of
diacylglycerol (DAG) from the fat body lipid storage
depot to flight muscles in the adult life stage.
Length = 155
Score = 30.2 bits (68), Expect = 4.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEK-KKAEEESVKQTEEEQKGKEET 1456
+ L +E+ + +K+ K K+A ++ VK EE QK E
Sbjct: 109 QKLAKEVASNVEGTNEKLAPKIKQAYDDFVKNAEEVQKKLHEA 151
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 30.9 bits (70), Expect = 4.2
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPI----QEDEKEGNEEVMREDE 1478
RAL ++ K + K E K Q E K + +K ++E +++E
Sbjct: 14 RALESEKYKANKDKGNPEIYNK--INSQDKAIEKFKLLIKAQMAERVKKLHSQE--KKEE 69
Query: 1479 NKENDDRK 1486
K+ +K
Sbjct: 70 KKKPKKKK 77
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 31.4 bits (71), Expect = 4.2
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKG 1488
+ V E + E G + E ++ EK+ + V E ++E++D
Sbjct: 299 QDAVPLLVDLERNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEV-- 356
Query: 1489 EIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
EI++ + ++ E + E
Sbjct: 357 EIDESVIEEVAEMELLEVQVDDLAERLAETE 387
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 31.7 bits (72), Expect = 4.2
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
L EKE + + + Q ++ E E +P+ +E+E E+++ E
Sbjct: 775 LYEKEVRYLMQAHQK----GQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 31.0 bits (70), Expect = 4.3
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 1424 ALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
EKE + +KK +++E + + +KE+ ED ++ +++ ++
Sbjct: 141 EKFEKECRALSRKK--------SDDEHRKRSGKQKEKRRVEDSQK------HKEDRRKKQ 186
Query: 1484 DRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ K+ EDK G S S DE
Sbjct: 187 EEKRRNDEDKRPGGGGGSSGGQSGLSTKDE 216
Score = 31.0 bits (70), Expect = 4.5
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1422 KRALAEKEK-KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK-EGNEEVMREDEN 1479
KR+ +KEK +VE+ +K +E+ K+ EE+++ E+ + P G + +DE
Sbjct: 161 KRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDED---KRPGGGGGSSGGQSGLSTKDEP 217
Query: 1480 KENDDRKKGEIEDKEEDGKEN 1500
+ +K + E + E
Sbjct: 218 PKEKRQKHHDPERRLEPQSHE 238
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 31.3 bits (71), Expect = 4.3
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 1412 PMGEALGREIKRALAEK-EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
P+ E L K+ E+ EKK EEK++ + + + + +GK + + + E+EG
Sbjct: 359 PISELLKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGK 418
Query: 1471 ----EEVMREDENKENDDRKK---GEIEDKEEDGKENKSSETSADQEIDEVM 1515
E ED K IE +E + K E + +++V+
Sbjct: 419 ITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKE--KEKEKERPEFVEKVL 468
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of FCP-1
is required for interaction with the carboxy terminal
domain of RAP74. Interaction relies extensively on van
der Waals contacts between hydrophobic residues situated
within alpha-helices in both domains.
Length = 263
Score = 31.1 bits (70), Expect = 4.4
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E++ +E+ L E + +KK + ++ E+ + ++ ++ + + EG
Sbjct: 146 ESMDKEVDDILGEGSDDSDSEKKKPPGNEEEQEQAPQPRK--QQPPGPRREPDEGTPSSS 203
Query: 1475 REDENKENDDR--KKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
R K+ E+ EED + S E+S + E ADE
Sbjct: 204 ERSNIGGRGPRGHKRKLNEEDEEDAESESSFESSNEDEEGSSSEADE 250
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 31.5 bits (71), Expect = 4.4
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 1408 AVPPPMGEALGR--EIKRALAEK--------EKKVEEKKKAEEESVKQTEEEQKGKEETE 1457
V GE+ E A E+ + + AE S E E +
Sbjct: 351 QVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHD 410
Query: 1458 KEEPIQEDEKEGNEEVMREDE 1478
+ EP ++ + + DE
Sbjct: 411 ETEPEVPEKAAPIPDPAKPDE 431
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria, where
L7/L12 forms either two or three homodimers and each
homodimer binds to the extended C-terminal helix of L10.
L7/L12 is attached to the ribosome through L10 and is the
only ribosomal protein that does not directly interact
with rRNA. Archaeal L12p is believed to function in a
similar fashion. However, hybrid ribosomes containing the
large subunit from E. coli with an archaeal stalk are
able to bind archaeal and eukaryotic elongation factors
but not bacterial elongation factors. In several
mesophilic and thermophilic archaeal species, the binding
of 23S rRNA to protein L11 and to the L10/L12p pentameric
complex was found to be temperature-dependent and
cooperative.
Length = 106
Score = 29.4 bits (66), Expect = 4.6
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 1408 AVPPPMGEALGREIKRALAEKEKKVEEKKKAEEE 1441
A E E E+EKK EE+K+ EEE
Sbjct: 68 AAAAAAAEEKAEE-----KEEEKKKEEEKEEEEE 96
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 31.2 bits (71), Expect = 4.8
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 1435 KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKE 1494
KK EEE++ ++ EE K E I E+ +E E + + + +K E+ K
Sbjct: 440 KKFLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKK--EVPKKV 497
Query: 1495 EDGKENKSSETSADQEIDE 1513
+ E + + I+E
Sbjct: 498 KKIPEVDTYLLLEELGINE 516
>gnl|CDD|214018 cd12925, iSH2_PIK3R3, Inter-Src homology 2 (iSH2) helical domain of
Class IA Phosphoinositide 3-kinase Regulatory subunit 3,
PIK3R3, also called p55gamma. PI3Ks catalyze the
transfer of the gamma-phosphoryl group from ATP to the
3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives.
They play an important role in a variety of fundamental
cellular processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, immune cell
activation, and apoptosis. They are classified according
to their substrate specificity, regulation, and domain
structure. Class IA PI3Ks are heterodimers of a p110
catalytic (C) subunit and a p85-related regulatory (R)
subunit. The R subunit down-regulates PI3K basal
activity, stabilizes the C subunit, and plays a role in
the activation downstream of tyrosine kinases. All R
subunits contain two SH2 domains that flank an
intervening helical domain (iSH2), which binds to the
N-terminal adaptor-binding domain (ABD) of the catalytic
subunit. p55gamma, also called PIK3R3 or p55PIK, also
contains a unique N-terminal 24-amino acid residue (N24)
that interacts with cell cycle modulators to promote cell
cycle progression.
Length = 161
Score = 30.0 bits (67), Expect = 4.9
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 1430 KKVEEKKKAEE---ESVKQTEEEQKGKEETEKEEPIQEDEKEGNE-EVMREDENKENDDR 1485
++++ K+ A E E++K EE+ +E KE I+ +EGNE E+ R N E
Sbjct: 36 QEIQMKRTAIEAFNETIKIFEEQCHTQERYSKEY-IERFRREGNEKEIERIMMNYEKLKS 94
Query: 1486 KKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
+ GEI D + +++ ++ ++EID+ M +
Sbjct: 95 RLGEIHDSKMRLEQDLKTQALDNREIDKKMNS 126
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 29.6 bits (67), Expect = 5.0
Identities = 11/58 (18%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 1439 EEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEED 1496
EE + + ++K K+ + ++ I +D+ +++ ED ++E+D+ ++++E+
Sbjct: 78 EEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDE------DEEDEE 129
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins in
this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This family
is related to many other flap endonuclease families
including the fen1 family. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1034
Score = 31.4 bits (71), Expect = 5.0
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG---NEEVMREDENKEND 1483
EKE+ + E +SV T E Q + +E + E + E +E E+ D
Sbjct: 650 EKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFD 709
Query: 1484 DRKKGEIEDKEEDGKENKSSETS 1506
+ E ++ +E K ++
Sbjct: 710 E---SEEDNIVGMIEEEKDADDF 729
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 31.2 bits (72), Expect = 5.0
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 1440 EESVKQTEEEQKGKEETEKEEPIQE----------DEKEGNEEVMREDENKENDDRKK-- 1487
E +VK EE++ K + EE +E G EE E RKK
Sbjct: 105 EIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLR 164
Query: 1488 -GEIEDKE 1494
GE++DKE
Sbjct: 165 EGELDDKE 172
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 31.2 bits (71), Expect = 5.1
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
G + +K+ L EK E +E + KEE + + EE
Sbjct: 190 GRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEE 249
Query: 1474 MRE-----DENKENDDRKKGEIEDKEEDGKE 1499
E E + + ++ KE
Sbjct: 250 FEEEEEKPAEKSTESTFQLSKETSIAKESKE 280
>gnl|CDD|218301 pfam04871, Uso1_p115_C, Uso1 / p115 like vesicle tethering protein, C
terminal region. Also known as General vesicular
transport factor, Transcytosis associate protein (TAP)
and Vesicle docking protein, this myosin-shaped molecule
consists of an N-terminal globular head region, a
coiled-coil tail which mediates dimerisation, and a short
C-terminal acidic region. p115 tethers COP1 vesicles to
the Golgi by binding the coiled coil proteins giantin (on
the vesicles) and GM130 (on the Golgi), via its
C-terminal acidic region. It is required for
intercisternal transport in the golgi stack. This family
consists of the acidic C-terminus, which binds to the
golgins giantin and GM130. p115 is thought to juxtapose
two membranes by binding giantin with one acidic region,
and GM130 with another.
Length = 136
Score = 29.9 bits (67), Expect = 5.2
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+ +AL E K AL E + E+S T + + KE+ EE ++E +KE ++
Sbjct: 35 VNKALENEEK-ALKEAR---LTRPTCLEKSFSTTPDLEAEKEKL-DEEALKESQKEQDDL 89
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
++ + +E + K +++D ++ E D+ DE +E
Sbjct: 90 LVLLADQEEKVTKYKEKLKDLGVPVSNDEPLEAIGDESEDEEEDEEE 136
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This family
contains several uncharacterized proteins found in
Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 30.5 bits (69), Expect = 5.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGE 1489
KK+EE+K E+E E+E +E + E E + E + + ++K E
Sbjct: 107 KKLEERKGLEKEI---AEKEISRQE--------LDSEIAELERKILELQRQAALLKEKKE 155
Query: 1490 IEDKEEDGKENKSSETSADQEIDEV 1514
EDKE KS + QE+ +
Sbjct: 156 AEDKEI--ARLKSEASKIKQELVDA 178
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This family
is a region of the Myb-Related Cdc5p/Cef1 proteins, in
fungi, and is part of the pre-mRNA splicing factor
complex.
Length = 363
Score = 30.8 bits (70), Expect = 5.4
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 1453 KEETEKE---EPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSS 1503
K + E E +E+E E EE + ED + D +K E+ +E + + S
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEED--AADRDARKRAAEEAKEQEELRRRS 191
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved in
a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 29.5 bits (67), Expect = 5.4
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 1415 EALGREIKRALAEKEKKVE--EKKKAE------EESVKQTEEEQKGKEETEKEEPIQED 1465
+A R+ ++ +A+K V E+KKA E+ +++T +E++ K+ E+ + D
Sbjct: 39 DAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEIKDLKEQLSKAEVD 97
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome, requires
the ordered recruitment of Slu7, Prp18, and Prp22 to the
spliceosome. There is a close functional relationship
between Prp8, Prp18, and Slu7, and Prp18 interacts with
Slu7, so that together they recruit Prp22 to the
spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 30.5 bits (69), Expect = 5.4
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGE 1489
KK +EKK+ + KQ+ E+ G EE + P +E +E+ + D + K
Sbjct: 163 KKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPP-KELLLGQSEDYVEYDRAGKKKKAKSKY 221
Query: 1490 IED 1492
ED
Sbjct: 222 EED 224
>gnl|CDD|149453 pfam08397, IMD, IRSp53/MIM homology domain. The N-terminal predicted
helical stretch of the insulin receptor tyrosine kinase
substrate p53 (IRSp53) is an evolutionary conserved
F-actin bundling domain involved in filopodium formation.
The domain has been named IMD after the IRSp53 and
missing in metastasis (MIM) proteins in which it occurs.
Filopodium-inducing IMD activity is regulated by Cdc42
and Rac1 and is SH3-independent.
Length = 218
Score = 30.5 bits (69), Expect = 5.4
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 1398 ILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGK-EET 1456
+ HR + + + E + EKK E KK K + E K K +E
Sbjct: 63 MSMVHRSINSK----LEEFFKAFHDELINPLEKKTELDKKYANALDKDYQTEYKKKRDEL 118
Query: 1457 EKEEP----IQEDEKEGNEEVMRE-DENKENDDRKKGEIEDKEEDG 1497
EK++ +Q ++G + + E E+ + K+ E+E+ E+ G
Sbjct: 119 EKKQSDLKKLQRKSQKGKNDSKYQLKEALEDVNDKQLELEEFEKQG 164
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 30.4 bits (68), Expect = 5.5
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 1443 VKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKS 1502
VK + K K + +K E + ++ R+D+N+E + E + EE G
Sbjct: 83 VKTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKNEEKE--PTEEAQRNEESGDAEGG 140
Query: 1503 SETSADQEIDEVMTADET 1520
+ + + D + D++
Sbjct: 141 ASGRSPSDDDNLDEMDDS 158
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 31.0 bits (70), Expect = 5.8
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 1425 LAEKEKKVEEKKKAEEESVKQTEEE-QKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
L EK VEE +K + +Q EEE +K E+ KEE ++ EE ++E
Sbjct: 363 LERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEE-ESLFKRVALEEGLKE------- 414
Query: 1484 DRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
++ E +E KE K E EV
Sbjct: 415 -LEQDEENFLKELSKEEKELLEKLKMEASEV 444
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4 (TAF4)
is one of several TAFs that bind TBP and is involved in
forming Transcription Factor IID (TFIID) complex. The
TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is
one of several TAFs that bind TBP and are involved in
forming the Transcription Factor IID (TFIID) complex.
TFIID is one of seven General Transcription Factors (GTF)
(TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are
involved in accurate initiation of transcription by RNA
polymerase II in eukaryote. TFIID plays an important role
in the recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a specific
activator, is required only for the expression of subset
of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells, TAFs
have been found as components of other complexes besides
TFIID. Several TAFs interact via histone-fold (HFD)
motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other transcription
factors. TFIID has a histone octamer-like substructure.
TAF4 domain interacts with TAF12 and makes a novel
histone-like heterodimer that binds DNA and has a core
promoter function of a subset of genes.
Length = 212
Score = 30.4 bits (69), Expect = 5.8
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
++++ L +E+ ++ EEE K+ EEE++ K Q K+ +E+ +E++
Sbjct: 111 DVRKQLRF----LEQLEREEEE--KRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDE 164
Query: 1480 K 1480
+
Sbjct: 165 E 165
Score = 30.4 bits (69), Expect = 6.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
R L + E++ EEK+ EE + + ++ K++ +E +KE +EE+ N
Sbjct: 117 RFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKA-KEMQKEEDEEMRHRAAN 172
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase Y
sorting pathway.
Length = 356
Score = 30.6 bits (69), Expect = 5.9
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 1415 EALGREIKRAL--AEKEKKV--------EEKKKAEEESVK-QTEEEQKGKEETEKEEPIQ 1463
+ L + L AEKE+ E + +E ++ KEE + ++
Sbjct: 28 DILLERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELE 87
Query: 1464 EDEKEG---NEEVMREDENKENDDRKKGE 1489
E EKE + E++ E KE + ++ +
Sbjct: 88 ELEKEDDDLDGELVELQEEKEQLENEELQ 116
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 29.5 bits (67), Expect = 5.9
Identities = 18/100 (18%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
G+ ++ L ++ KK + + + E+ +++ +E+ + T E ++ EKE ++V +E
Sbjct: 16 GKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKV-QEF 74
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
+ K+ + +++ +++ +E + ++ I EV
Sbjct: 75 QRKQQK--LQQDLQKRQQ--EELQKILDKINKAIKEVAKK 110
>gnl|CDD|115185 pfam06513, DUF1103, Repeat of unknown function (DUF1103). This
family consists of several repeats of around 30 residues
in length which are found specifically in
mature-parasite-infected erythrocyte surface antigen
proteins from Plasmodium falciparum. This family often
found in conjunction with pfam00226.
Length = 215
Score = 30.2 bits (67), Expect = 5.9
Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+GE ++K K+ KV +K ++E ++ E+ K K + + ++ I+E++ EGN++
Sbjct: 3 LGEGDKEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKEKCKKKVKKGIKENDTEGNDK 62
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTAD 1518
V + E K EI+ + EDG + +E + + E++T +
Sbjct: 63 VKGPEIIIE---EVKEEIKKQVEDGIKENDTEGNDKVKGPEIITEE 105
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday
junction resolvase. This domain is found in various
predicted bacterial endonucleases which are distantly
related to archaeal Holliday junction resolvases.
Length = 153
Score = 30.0 bits (68), Expect = 5.9
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 1431 KVEEKKKAEEESVKQTEEEQ--KGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKG 1488
KVE++ + E + E E + E + EE +++EKE +R+D ++ +G
Sbjct: 19 KVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKE-----IRKDAVNKSRAVLRG 73
Query: 1489 EI 1490
++
Sbjct: 74 KV 75
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 31.2 bits (70), Expect = 6.1
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1436 KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEE 1495
+K E+ V +EE K + + EEP E+ KEG+E ++ K + K+ E+++K +
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEG-KKKKTKKVKEVTKEYEVQNKHK 266
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 31.1 bits (71), Expect = 6.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
P + L RE+ + EKE E+ + E++ + + KE I E EKE
Sbjct: 399 KPEELDELERELAQLEIEKEALEREQDEKEKKLID--------EIIKLKEGRIPELEKEL 450
Query: 1470 NEEVMRED 1477
EV +D
Sbjct: 451 EAEVDEDD 458
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 31.1 bits (70), Expect = 6.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1454 EETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E E EE + E E ++E DE++E+D+ ED ED EN SS+ ++ DE
Sbjct: 930 ESDESEEEVSEYEASSDDESDETDEDEESDESS----EDLSEDESENDSSDEEDGEDWDE 985
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.6 bits (69), Expect = 6.7
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 1418 GREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
EIK+ ++ + + +KK + + E E + E+ +
Sbjct: 329 NAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMAR----------ARA 378
Query: 1478 ENKENDDRKKGEIE--DKEEDGKENKSSETSADQEIDE 1513
+KKG I+ E+ EN+ S+ S Q
Sbjct: 379 RRAAVKAKKKGLIDASPNEDTPSENEESKGSPPQVEAT 416
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 30.4 bits (70), Expect = 7.1
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 1416 ALGREIKRALAEKEKKVEEKKKAEE--ESVKQTEEEQKGKEETEKEE------------P 1461
AL +EI +A + E + +E E +K E E E +E P
Sbjct: 53 ALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVP 112
Query: 1462 IQEDEKEGNEEVMREDENKEND 1483
+ +DE + N EV R E +E D
Sbjct: 113 VGKDE-DDNVEVRRWGEPREFD 133
>gnl|CDD|204099 pfam08933, DUF1864, Domain of unknown function (DUF1864). This
domain has no known function. It is found in various
hypothetical and conserved domain proteins.
Length = 387
Score = 30.5 bits (69), Expect = 7.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 743 NEAYNSKTEEFTNLPTEALFLGSVSKG 769
N A N + FT+LP E LFL +KG
Sbjct: 129 NPAANGLYKRFTDLPDEKLFLDYNTKG 155
>gnl|CDD|218324 pfam04912, Dynamitin, Dynamitin. Dynamitin is a subunit of the
microtubule-dependent motor complex and in implicated in
cell adhesion by binding to macrophage-enriched
myristoylated alanine-rice C kinase substrate
(MacMARCKS).
Length = 376
Score = 30.5 bits (69), Expect = 7.6
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 1434 EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDK 1493
KKK + +KQ E E G+ +EKE P+Q+ ++ E M E EI+
Sbjct: 65 GKKKRKGYLMKQGEYEILGEGFSEKETPVQKFQRLQTE--MNELLE---------EIQAI 113
Query: 1494 EEDGKENKSSETSADQEIDEVMTADE 1519
+ D KE+K + S V T ++
Sbjct: 114 QSDVKESKEEKISTVALAGVVETLEK 139
>gnl|CDD|220615 pfam10175, MPP6, M-phase phosphoprotein 6. This is a family of
M-phase phosphoprotein 6s which is necessary for
generation of the 3' end of the 5.8S rRNA precursor. It
preferentially binds to poly(C) and poly(U).
Length = 104
Score = 28.7 bits (64), Expect = 7.6
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 21/89 (23%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKE-----EP---IQEDEKEG-------NEE 1472
+ K EEKK +EE EE K E E EP ED G N E
Sbjct: 13 RTKDKEEKKADDEEERALISEEIDLKMLKETENFIIEEPSYVPCEDLIYGRLSFGGFNPE 72
Query: 1473 VMR--EDENKENDDRKKGEIEDKEEDGKE 1499
V E + E ++ E+ ++++DG +
Sbjct: 73 VELLMEQDEAE----QQAELSEEQDDGMD 97
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 30.6 bits (69), Expect = 7.7
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 1408 AVPPPMGEALGREIKRALAEKEKKVEEKKKAEEES---VKQTEEEQKGKEETEKEEPIQE 1464
+ P G A R E +K ++ ++E + ++ + +E IQ
Sbjct: 2 STSKPKGSAPRGFAPRTTVESSQKRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQV 61
Query: 1465 DEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
D + +E + E E + EIE ++ KSS S +E D D
Sbjct: 62 DFQHNSESAVEEVEA-------EDEIEVEQNQSDVLKSS--SIVKEESISTDMDGIDD 110
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 29.8 bits (67), Expect = 7.7
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 1420 EIKRALAEKEKKV--EEKKKAEEESVKQTEEEQKGKEETEKEEPIQE--DEKEGNEEVMR 1475
E+ + L+EK K++ EEK+ +E+ E Q+ KEE K+ P + NE +R
Sbjct: 100 EVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYNKKLPNKAPIGPFIENEPKIR 159
Query: 1476 EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ D K +E+ + K A E+DE
Sbjct: 160 PKVEGPSPD--KALVEETKIISK--------AWSELDESKKKKYIDK 196
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function of
NS2 is not known, but it may be involved in the transport
and condensation of viral mRNAs.
Length = 363
Score = 30.2 bits (68), Expect = 7.9
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKG 1488
E +++K+ +V++ E EE ++ KE E E ++ + D+
Sbjct: 206 ETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDE---- 261
Query: 1489 EIEDKEEDGKENKSSETSA 1507
ED E+ + +S TS
Sbjct: 262 HGEDSEDGETKPESYITSE 280
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 30.0 bits (68), Expect = 8.0
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 1417 LGREIKRALAEKEKKVE------EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
L R I A+ +EKK+ + KK E E ++ EE+ + + ++E + + ++E
Sbjct: 26 LYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQ 85
Query: 1471 EEVMR--EDENKENDDRKKGEIEDKEEDGKE 1499
E R ++ +E D+ ++ E +
Sbjct: 86 AERQRLLDEAREEADEIREKWQEALRREQAA 116
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein
product of the dentatorubral-pallidoluysian atrophy
(DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the expansion
of a CAG repeat in the DRPLA gene on chromosome 12p. This
results in an extended polyglutamine region in
atrophin-1, that is thought to confer toxicity to the
protein, possibly through altering its interactions with
other proteins. The expansion of a CAG repeat is also the
underlying defect in six other neurodegenerative
disorders, including Huntington's disease. One
interaction of expanded polyglutamine repeats that is
thought to be pathogenic is that with the short glutamine
repeat in the transcriptional coactivator CREB binding
protein, CBP. This interaction draws CBP away from its
usual nuclear location to the expanded polyglutamine
repeat protein aggregates that are characteristic of the
polyglutamine neurodegenerative disorders. This
interferes with CBP-mediated transcription and causes
cytotoxicity.
Length = 979
Score = 30.8 bits (69), Expect = 8.0
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
AE KK +K K E S ++ + Q+ K ++ EEP + K+ + + N ++
Sbjct: 59 AESTKKPNKKIKEEATSPLKSTKRQREKPASDTEEPERVTAKKSKTQELSR-PNSPSEGE 117
Query: 1486 KKGEIEDKEEDGKENKSSETSADQEIDE 1513
+GE E + D + +S ++ID+
Sbjct: 118 GEGEGEGESSDSRSVNEEGSSDPKDIDQ 145
Score = 30.8 bits (69), Expect = 8.4
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 1435 KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
KK+ E + E EQK +EE E+E +E EKE E RE E
Sbjct: 579 KKREEAVEKAKREAEQKAREERERE---KEKEKEREREREREAE 619
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 30.6 bits (70), Expect = 8.0
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 1417 LGREIKRALAEKEKKVEEKKKAE-----------------EESVKQTEEEQKGKEETEKE 1459
+ R++K+ L+ K K+ E KKKA+ E+ EE + E
Sbjct: 451 VARKLKKYLSRKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLE 510
Query: 1460 EPIQEDEKEGNEEVMREDENKENDD 1484
E E+E+E V+ +N D
Sbjct: 511 EEEVEEEEEEEAVVVESAKNYTEKD 535
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and eukaryotes.
This presumed domain is typically between 88 to 187 amino
acids in length.
Length = 139
Score = 29.1 bits (66), Expect = 8.6
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 1419 REIKRALAEKEKKV----EEKKKAEEESVKQTEEEQ-------KGKEETEKEEPIQEDEK 1467
+I E++ K E ++KAE E ++ ++ G+E + + + +D++
Sbjct: 59 EDIAWLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKE 118
Query: 1468 E 1468
E
Sbjct: 119 E 119
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 29.3 bits (66), Expect = 8.8
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
A A KK + +A E E+E
Sbjct: 117 PTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 30.5 bits (70), Expect = 9.1
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 17/87 (19%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEES---------VKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
EI+R + + E EE KK +E + QTE K E + + DEKE
Sbjct: 504 EIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTE-----KTLKELGDKVPADEKEKI 558
Query: 1471 EEVMRE-DENKENDDRKKGEIEDKEED 1496
E ++E E + +D K I+ K E+
Sbjct: 559 EAAIKELKEALKGED--KEAIKAKTEE 583
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of numerous
eukaryotic protein kinases. This domain corresponds to
the N terminal domain which binds predominantly to
protein kinases.and is found N terminal to the Hsp (Heat
shocked protein) 90-binding domain. Expression of a
construct consisting of only the N-terminal domain of
Saccharomyces pombe Cdc37 results in cellular viability.
This indicates that interactions with the cochaperone
Hsp90 may not be essential for Cdc37 function.
Length = 154
Score = 29.3 bits (66), Expect = 9.2
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 1378 SVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKK 1437
+RE S P +++ + E Q+ + G+ L E+ KK +K K
Sbjct: 71 GLREEELSPETPTYNE---MLAELQDQLKKELEEANGD------SEGLLEELKKHRDKLK 121
Query: 1438 AEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
E++ +++ +E + + EK++ D G
Sbjct: 122 KEQKELRKKLDELEKE---EKKKIWSVDTHTG 150
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The outer
doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end of
the spoke stalk and helps in anchoring the radial spoke
to the outer doublet. It is thought that radial spokes
regulate the activity of inner arm dynein through protein
phosphorylation and dephosphorylation.
Length = 288
Score = 30.0 bits (68), Expect = 9.2
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 1405 VGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE 1464
VG + + E L E L +++++ E+++ AE ++ EE ++ + E EKE ++
Sbjct: 137 VGKTLEQALLEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRRE-EKERRKKQ 195
Query: 1465 DEKEGNEEVMREDENKENDDRKK 1487
D +E + +E + +K
Sbjct: 196 D---------KERKQREKETAEK 209
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 29.8 bits (67), Expect = 9.4
Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+++A AE + +E + +A+ ++++ E+++ + E E+E IQE ++EG E
Sbjct: 45 ILEKAEAEAAQIIE-QAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEA 96
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 28.9 bits (65), Expect = 9.8
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGK 1453
+K+ L EK K+ +K+K +++ K+ + +K
Sbjct: 101 VKQVLKEKAKQ--KKQKKKKKKKKKKKTSKKAA 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 76,927,283
Number of extensions: 7598036
Number of successful extensions: 13962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11123
Number of HSP's successfully gapped: 935
Length of query: 1522
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1412
Effective length of database: 6,058,662
Effective search space: 8554830744
Effective search space used: 8554830744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (29.3 bits)