RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16462
(1522 letters)
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 733 bits (1892), Expect = 0.0
Identities = 362/880 (41%), Positives = 512/880 (58%), Gaps = 25/880 (2%)
Query: 11 RCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEI---DDAPLSRITCF 67
+C C + LDDP +Q HP +A + LT L ++D TS +D+P+ R T F
Sbjct: 68 KCPECGQHLDDP-NLKYQQHPEDAVDEPQMLTSEKLSIYDSTSTWFDTYEDSPMHRFTSF 126
Query: 68 SVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYD 127
SVY GHLCP DTGL+EKNV L FSG K I E+P+ EGGI K +GPIN W ++G+D
Sbjct: 127 SVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENPSMEGGINGKNLGPINQWWLSGFD 186
Query: 128 GGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNT 187
GGE+ I +T F+E +LMEPS+EY P + EKIY+ K+V+E + + +A +EDL+N
Sbjct: 187 GGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVEFLQNNPDAVYEDLINK 246
Query: 188 LQTATLPASVGV--LSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAG 245
++T P+++ V +ED LLRHAQF+ QV +D+A + DET + ++PC+R LI LAG
Sbjct: 247 IETTVPPSTINVNRFTEDSLLRHAQFVVSQVESYDEAKD-DDETPIFLSPCMRALIHLAG 305
Query: 246 VTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLNE-----KHEGP 300
V+ GQR+ A+ R + +KATTT LV +F+ FF Q+ + K
Sbjct: 306 VSLGQRR---ATRRVMGATKE-KDKAPTKATTTKLVYQIFDTFFSEQIEKYDKEDKENAM 361
Query: 301 RKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDG 360
+++RCGVCE CQQP+CG C AC DMVKFGGTG++KQAC+KRRCPN AV++A+D + E D
Sbjct: 362 KRRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCPNLAVKEADDDE-EADD 420
Query: 361 DEVEEKVVKATTKPSWKIKVTGSGKKQIEWQGEGEEMDS-KLYYKSALIGGEEVKVGDYV 419
D E K + K K +I W G+ +++ + YY+ I E ++VGD V
Sbjct: 421 DVSEMPSPKKLHQGKKKK----QNKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCV 476
Query: 420 MVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACD 479
V DD + P + +V ++ED H WF G +TVL SDP ELFL+ C+
Sbjct: 477 SVIPDDSSKPLYLARVTALWEDKN--GQMMFHAHWFCAGTDTVLGATSDPLELFLVGECE 534
Query: 480 DVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVP 539
++ L+ + + +V + SENWAM+GG T ED ++++++ Y+ +ARF P
Sbjct: 535 NMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESPP 594
Query: 540 NEMFSSGID-KYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVY 598
+ K+C SC + E P + E+ Y + ++ G Y+L VY
Sbjct: 595 KTQPTEDNKHKFCLSCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVY 654
Query: 599 VNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIF 658
+ P+ F F K S V+ K+ +E LYPE YRK SDY+KGSN P P+ IG I I
Sbjct: 655 LPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIH 714
Query: 659 KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCF 718
K K V+ +D+ L + KFYRPENTHRS +Y D+N LYWSDEE V+ SDVQG+C
Sbjct: 715 CGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCT 774
Query: 719 VVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVSKGKGKGKNQTN 778
V ++L S +S GP RFYF EAYNSKT+ F + P A G+ KGKGKGK +
Sbjct: 775 VEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPNHARSPGNKGKGKGKGKGKGK 834
Query: 779 KPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838
+ + E LR L+VF+G GGLS G ++G++ + WAIE AA AF++NN
Sbjct: 835 HQVSEPKEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN 894
Query: 839 PGCTVFVDDCNKILQRVIDNEVWGKGKNQTNKPEEKDEIT 878
PG TVF +DCN +L+ V+ EV + + + + +
Sbjct: 895 PGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLC 934
Score = 343 bits (881), Expect = 8e-98
Identities = 253/378 (66%), Positives = 296/378 (78%), Gaps = 3/378 (0%)
Query: 1065 RGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFG 1124
R S FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+T+RCL ++GYQCTFG
Sbjct: 951 RTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFG 1010
Query: 1125 TLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWT 1184
LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR QL+V + K +VS
Sbjct: 1011 VLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRL 1070
Query: 1185 QSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKD 1244
S P+RTITVRD MSDLPEIQNG E+PY LS FQR++R I+ DHICKD
Sbjct: 1071 SSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGS-HYQPILRDHICKD 1129
Query: 1245 MAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVC 1304
M+PLV AR++HIP GSDWRDLPNI+VRL DG KLQYT +D+KNG SSTGALRGVC
Sbjct: 1130 MSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVC 1189
Query: 1305 SCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGK 1364
SCA CDP +RQF TLIPWCLPHTGNRHN+W GLYGRL+W+GFFSTT+TNPEPMGK
Sbjct: 1190 SCAE--GKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGK 1247
Query: 1365 QGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRA 1424
QGRVLHPEQHRVVSVRECARSQGFPD ++F G IL++HRQVGNAVPPP+ +A+G EIK
Sbjct: 1248 QGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKLC 1307
Query: 1425 LAEKEKKVEEKKKAEEES 1442
L ++ +E
Sbjct: 1308 LLSSARESASAAVKAKEE 1325
Score = 195 bits (497), Expect = 2e-50
Identities = 118/192 (61%), Positives = 151/192 (78%), Gaps = 4/192 (2%)
Query: 861 WGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSA 920
GKGK+Q ++P+E + + P LR L+VF+G GGLS G ++G++ + WAIE
Sbjct: 830 KGKGKHQVSEPKEPEAAIKLP----KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDP 885
Query: 921 AATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGM 980
AA AF++NNPG TVF +DCN +L+ V+ EV + Q+LP+KG+VEMLCGGPPCQGFSGM
Sbjct: 886 AAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGM 945
Query: 981 NRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGY 1040
NRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+T+RCL ++GY
Sbjct: 946 NRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGY 1005
Query: 1041 QCTFGTLQAGHF 1052
QCTFG LQAG +
Sbjct: 1006 QCTFGVLQAGQY 1017
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 531 bits (1369), Expect = e-168
Identities = 239/627 (38%), Positives = 346/627 (55%), Gaps = 16/627 (2%)
Query: 259 RGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLNE-----KHEGPRKKRCGVCEACQQ 313
+ + +KATTT LV +F+ FF Q+ + K +++RCGVCE CQQ
Sbjct: 4 QTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQQ 63
Query: 314 PDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDGDEVEEKVVKATTK 373
P+CG C AC DMVKFGG+G++KQAC +RRCPN A+++A+D + E+D + E K +
Sbjct: 64 PECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDE-EVDDNIPEMPSPKKMHQ 122
Query: 374 PSWKIKVTGSGKKQIEWQGEGEEMDS-KLYYKSALIGGEEVKVGDYVMVESDDPNNPPPV 432
K K +I W GE + D K YYK I E ++VGD V V DD + P +
Sbjct: 123 GKKK----KQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYL 178
Query: 433 GKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQV 492
+V ++ED + + H WF G +TVL SDP ELFL++ C+D+ L+ + + +V
Sbjct: 179 ARVTALWED--SSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKV 236
Query: 493 KHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGID-KYC 551
+ SENWAM+GG P ++ +D ++++Y+ YD +ARF P + K+C
Sbjct: 237 IYKAPSENWAMEGG-MDPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFC 295
Query: 552 FSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQ 611
SC + E P + E + Y + G Y++ VY+ P+ F F K
Sbjct: 296 VSCARLAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLS 355
Query: 612 SAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIF-KKKGKKNVSASD 670
S V+ ++ DE+LYPE YRK SDY+KGSN P P+ IG I IF KK + +D
Sbjct: 356 SPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETD 415
Query: 671 VFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTD 730
+ + V KFYRPENTH+S +Y D+N LYWSDEE V VQG+C V ++L
Sbjct: 416 IKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQ 475
Query: 731 RWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVSKGKGKGKNQTNKPEEKDEITEWP 790
+S GP+RFYF EAYN+K++ F + P A G+ KGKGKGK + + E
Sbjct: 476 VYSMGGPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIE 535
Query: 791 SIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNK 850
LR L+VF+G GGLS G ++G++ + WAIE AA AF++NNPG TVF +DCN
Sbjct: 536 IKLPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNI 595
Query: 851 ILQRVIDNEVWGKGKNQTNKPEEKDEI 877
+L+ V+ E + + + + +
Sbjct: 596 LLKLVMAGETTNSRGQRLPQKGDVEML 622
Score = 341 bits (874), Expect = 8e-99
Identities = 252/364 (69%), Positives = 295/364 (81%), Gaps = 2/364 (0%)
Query: 1065 RGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFG 1124
R S FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK SMVLK+T+RCL ++GYQCTFG
Sbjct: 640 RTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFG 699
Query: 1125 TLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWT 1184
LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR QL+V + K +VS
Sbjct: 700 VLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRL 759
Query: 1185 QSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKD 1244
S P+RTITVRD MSDLPE++NG E+ Y S FQR++R +P I+ DHICKD
Sbjct: 760 SSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQP-ILRDHICKD 818
Query: 1245 MAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVC 1304
M+ LV AR++HIP GSDWRDLPNIEVRL DGT +KL+YTH+D KNG+SS+GALRGVC
Sbjct: 819 MSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVC 878
Query: 1305 SCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGK 1364
SC + K CDP ARQF TLIPWCLPHTGNRHN+W GLYGRL+W+GFFSTT+TNPEPMGK
Sbjct: 879 SCVEAGK-ACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGK 937
Query: 1365 QGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRA 1424
QGRVLHPEQHRVVSVRECARSQGFPD ++ G IL+KHRQVGNAVPPP+ +A+G EIK
Sbjct: 938 QGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLC 997
Query: 1425 LAEK 1428
+ K
Sbjct: 998 MLAK 1001
Score = 198 bits (503), Expect = 1e-51
Identities = 117/191 (61%), Positives = 146/191 (76%), Gaps = 2/191 (1%)
Query: 862 GKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAA 921
GKGK ++ E + E LR L+VF+G GGLS G ++G++ + WAIE A
Sbjct: 518 GKGKPKSQACEPSEPEIEIKL--PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPA 575
Query: 922 ATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMN 981
A AF++NNPG TVF +DCN +L+ V+ E + + Q+LP+KG+VEMLCGGPPCQGFSGMN
Sbjct: 576 AQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMN 635
Query: 982 RFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQ 1041
RFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK SMVLK+T+RCL ++GYQ
Sbjct: 636 RFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQ 695
Query: 1042 CTFGTLQAGHF 1052
CTFG LQAG +
Sbjct: 696 CTFGVLQAGQY 706
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like
barrel, cell cycle, metal BIND binding,DNA replication;
HET: DNA BGC; 2.31A {Homo sapiens}
Length = 268
Score = 277 bits (710), Expect = 8e-85
Identities = 111/247 (44%), Positives = 160/247 (64%), Gaps = 7/247 (2%)
Query: 11 RCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSD---EIDDAPLSRITCF 67
+C C + LDDP + HP +A + LT+ L +FD + P ++TCF
Sbjct: 20 KCIQCGQYLDDP-DLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCF 78
Query: 68 SVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYD 127
SVY ++GHLCP DTGL+EKN+ L FSG K I +DP+ EGG+ K +GPIN W I G+D
Sbjct: 79 SVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFD 138
Query: 128 GGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNT 187
GGE+A I +T F+E +LM+PS EY P + EKIY+ K+V+E + + ++T+EDL+N
Sbjct: 139 GGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINK 198
Query: 188 LQTATLPAS--VGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAG 245
++T P+ + +ED LLRHAQF+ +QV +D+A +DE + +TPC+R LI+LAG
Sbjct: 199 IETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEAG-DSDEQPIFLTPCMRDLIKLAG 257
Query: 246 VTFGQRK 252
VT GQR+
Sbjct: 258 VTLGQRR 264
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
structural GENO protein structure initiative, PSI; 1.75A
{Escherichia coli O157}
Length = 376
Score = 198 bits (506), Expect = 5e-56
Identities = 61/365 (16%), Positives = 102/365 (27%), Gaps = 91/365 (24%)
Query: 1071 KNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGH 1130
+N L + + +P FFL ENV + K S + ++ ++A
Sbjct: 96 RNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAFNLVSGDYDILDPIKVKASD 155
Query: 1131 FGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYR 1190
+G R R + + + F P+
Sbjct: 156 YGAPTIRTRYFFIGV-KKSLKLDISDEV--FMPK-----------------------MID 189
Query: 1191 TITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQ 1250
+TV+D + LP+I + + + +
Sbjct: 190 PVTVKDALYGLPDIIDANWQSDSESWRTIKKDRKGGFYEK-------------------- 229
Query: 1251 ARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCSCATSA 1310
IP G + T T H+
Sbjct: 230 -LWGQIPRNVGDTESIAKLKNNIISGCTGTL-----HSK--------------------- 262
Query: 1311 KTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTIT----NPEPMGKQG 1366
++ + RL NGF T+ + +
Sbjct: 263 -------------IVQERYASLSFGETDKISRSTRLDPNGF-CPTLRAGTARDKGSFQAV 308
Query: 1367 RVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALA 1426
R +HP RV++ RE AR QGFPD +FH T RQ+GN+V P + E + + + L
Sbjct: 309 RPIHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVAEYILKGLYNLLN 368
Query: 1427 EKEKK 1431
E
Sbjct: 369 EGHHH 373
Score = 143 bits (363), Expect = 4e-37
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 12/166 (7%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
L +++F+G GGLS G ++G A+E D A +N P +D + + +
Sbjct: 3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEI 61
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
I K ++ + GGPPCQGFS + + +N L + +
Sbjct: 62 I--------KGFFKNDMPIDGIIGGPPCQGFSSIGK---GNPDDSRNQLYMHFYRLVSEL 110
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1052
+P FFL ENV + K S + ++ ++A +
Sbjct: 111 QPLFFLAENVPGIMQEKYSGIRNKAFNLVSGDYDILDPIKVKASDY 156
Score = 68.2 bits (167), Expect = 6e-12
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRV 855
L +++F+G GGLS G ++G A+E D A +N P +D + + +
Sbjct: 3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEI 61
Query: 856 IDNEVWGKGK 865
I
Sbjct: 62 IKGFFKNDMP 71
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase,
transferase/DNA complex; HET: DNA C49 5CM; 2.80A
{Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26
Length = 324
Score = 118 bits (298), Expect = 5e-29
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 19/166 (11%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
+ + +F+GAGGL G K+G R A E+D + ++ N+ + D +KI
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-KLIKGDISKI---- 54
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ P + + + GGPPCQ +S R + L Y+
Sbjct: 55 --------SSDEFP---KCDGIIGGPPCQSWSEGGS--LRGIDDPRGKLFYEYIRILKQK 101
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1052
+P FFL ENV+ +A +++ ++ ++ GY L A +
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDY 147
Score = 91.3 bits (227), Expect = 1e-19
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 1330 PHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFP 1389
+ G +L + + + K +R ++VRECAR QGFP
Sbjct: 231 WNEPAFTVQASGRQCQLHPQA--PVMLKVSKNLNK-FVEGKEHLYRRLTVRECARVQGFP 287
Query: 1390 DHHKFH-GTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
D FH ++ + ++ +GNAVP + + + IK AL
Sbjct: 288 DDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSAL 324
Score = 74.0 bits (182), Expect = 5e-14
Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 32/175 (18%)
Query: 1072 NSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1131
L Y+ +P FFL ENV+ +A +++ ++ ++ GY L A +
Sbjct: 88 GKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDY 147
Query: 1132 GVSQTRRRAIVLAAAPGEVLP-KYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYR 1190
GV+Q R+R + + P P
Sbjct: 148 GVAQDRKRVFYIGFRKELNINYLPPIP------------------------------HLI 177
Query: 1191 TITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDM 1245
T +DV+ DL + +++ N + E +S + +
Sbjct: 178 KPTFKDVIWDLKD-NPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQW 231
Score = 53.2 bits (128), Expect = 3e-07
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKI 851
+ + +F+GAGGL G K+G R A E+D + ++ N+ + D +KI
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-KLIKGDISKI 54
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 112 bits (281), Expect = 1e-26
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 21/170 (12%)
Query: 886 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 944
PLR LE+++G GG+ L +S + A+ AI+ ++ A +K N P + I
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61
Query: 945 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 1004
D D M+ PPCQ F+ + R Q + + + + L
Sbjct: 62 EEFDRLSFD-------------MILMSPPCQPFTRIGR--QGDMTDSRTNSFLHILDILP 106
Query: 1005 YYR--PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1052
+ P++ LLENV+ F+ S + ++ + G+Q L
Sbjct: 107 RLQKLPKYILLENVKG---FEVSSTRDLLIQTIENCGFQYQEFLLSPTSL 153
Score = 89.1 bits (221), Expect = 7e-19
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 1331 HTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPD 1390
+ +Q + + + +Q L + R + +E A GFP
Sbjct: 251 SYIEGTGSVLQTAEDVQVENIYKSLTNLSQ--EEQITKLLILKLRYFTPKEIANLLGFPP 308
Query: 1391 HHKFHGTILEKH--RQVGNAVPPPMGEALGREIK 1422
F I K R +GN++ + L + +
Sbjct: 309 EFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 342
Score = 64.4 bits (157), Expect = 8e-11
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 1064 TRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1123
+R +S I+ L P++ LLENV+ F + S + ++ + G+Q
Sbjct: 93 SRTNSFLHILDILPRLQK----LPKYILLENVKGF---EVSSTRDLLIQTIENCGFQYQE 145
Query: 1124 GTLQAGHFGVSQTRRRAIVLA---------AAPGEVLPKYPEPWT 1159
L G+ +R R ++A APG+VL ++P+
Sbjct: 146 FLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIEI 190
Score = 57.1 bits (138), Expect = 2e-08
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 795 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKI 851
PLR LE+++G GG+ L +S + A+ AI+ ++ A +K N P + I
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 59
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A
{Entamoeba histolytica}
Length = 327
Score = 109 bits (275), Expect = 5e-26
Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 885 RPLRCLEVFAGAGGLSRGLDKSG--VARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKI 942
+ + +E F+G GGL ++S + + + + A + N V V + + I
Sbjct: 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-EVQVKNLDSI 67
Query: 943 LQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSL---IVSY 999
+ I++ C+ PPCQ ++ + + + +
Sbjct: 68 SIKQIESLNCN-------------TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRD 114
Query: 1000 LSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1052
+ +P+ +ENV FK S+V K L + Y
Sbjct: 115 ILPYLINKPKHIFIENVPL---FKESLVFKEIYNILIKNQYYIKDIICSPIDI 164
Score = 77.5 bits (191), Expect = 4e-15
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 3/116 (2%)
Query: 1315 DPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQH 1374
L + G L ++ G I K+ L +
Sbjct: 212 SDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGTGSIYCPIEPHFIPVKKAEDLLNKNL 271
Query: 1375 RVVSVRECARSQGFPDHHKFHGTIL---EKHRQVGNAVPPPMGEALGREIKRALAE 1427
R + E + GF + L ++++ +GN+V + L + L E
Sbjct: 272 RYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDLKE 327
Score = 62.5 bits (152), Expect = 3e-10
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 1064 TRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 1123
R S + + +P+ +ENV F K S+V K L + Y
Sbjct: 103 PRAKSVLH---LYRDILPYLINKPKHIFIENVPLF---KESLVFKEIYNILIKNQYYIKD 156
Query: 1124 GTLQAGHFGVSQTRRRAIVLA 1144
G+ +R R V+A
Sbjct: 157 IICSPIDIGIPNSRTRYYVMA 177
Score = 50.6 bits (121), Expect = 2e-06
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 794 RPLRCLEVFAGAGGLSRGLDKSG--VARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKI 851
+ + +E F+G GGL ++S + + + + A + N V V + + I
Sbjct: 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-EVQVKNLDSI 67
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.75A {Shigella flexneri 2A} PDB:
3lx6_A
Length = 482
Score = 109 bits (274), Expect = 5e-25
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 14/217 (6%)
Query: 846 DDCNKILQRVIDNEVWGKGKNQTNKPEEKDEITEWPSI--ARPLRCLEVFAGAGGLSRGL 903
IL+R + N+ ++ + + + P R +++FAG GG+ RG
Sbjct: 46 HWSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGF 105
Query: 904 DKSGVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNKILQRVIDNEVCDDKKQKLP 960
+ G + + E++ A +K N +P F +D I + + + +
Sbjct: 106 ESIG-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164
Query: 961 RK-GEVEMLCGGPPCQGFS--GMNRFNQRQYSAF-----KNSLIVSYLSYCDYYRPRFFL 1012
+ E ++L G PCQ FS G+++ N + + +L + D RP F+
Sbjct: 165 QHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMFV 224
Query: 1013 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1049
LENV+N + ++ M+ L ++GY
Sbjct: 225 LENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNG 261
Score = 77.0 bits (189), Expect = 2e-14
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 5/120 (4%)
Query: 1336 HNNWCGLYGRLQWNGFFSTTITNPEP-MGKQGRVLHPEQHRVVSVRECARSQGF----PD 1390
Y + + + R ++ RECAR GF
Sbjct: 362 TRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEA 421
Query: 1391 HHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQ 1450
+ + + +RQ GN+V P+ A+ + ++ + + +++ + S +
Sbjct: 422 KFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKIKQAVALRQQEAQHGRRSREGHHHHH 481
Score = 55.1 bits (132), Expect = 1e-07
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 15/136 (11%)
Query: 1071 KNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA-- 1128
+ +L + D RP F+LENV+N + ++ M+ L ++GY
Sbjct: 204 QGTLFFDVVRIIDARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPD 263
Query: 1129 ------GHFGVSQTRRRAIV------LAAAPGEVLPKYPEPWTVFSPRTSQ-LNVTISKK 1175
G + Q R R ++ L L E + +Q L+ + K
Sbjct: 264 DPKIIDGKHFLPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAK 323
Query: 1176 TYVSTCKWTQSAPYRT 1191
++ W Y
Sbjct: 324 YILTPVLWKYLYRYAK 339
Score = 50.8 bits (121), Expect = 2e-06
Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 30/156 (19%)
Query: 720 VCEDNLQISTDRWSSRGPHRFYFNEAYNSK--TEEFTNLPTEALFLGSVSKGKGKGKNQT 777
+ + + WS+ R N++ + +EF +L T K
Sbjct: 35 LVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLL------------PKPPE 82
Query: 778 NKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN 837
+ P R +++FAG GG+ RG + G + + E++ A +K N
Sbjct: 83 HHPHYA------------FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKAN 129
Query: 838 ---NPGCTVFVDDCNKILQRVIDNEVWGKGKNQTNK 870
+P F +D I + +
Sbjct: 130 HYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology
domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC,
nuclear protein; 1.55A {Gallus gallus}
Length = 174
Score = 99 bits (249), Expect = 3e-24
Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 14/163 (8%)
Query: 392 GEGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCH 451
G + Y + VGDYV VE + N P + + ++ED + +
Sbjct: 6 SAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAG--EKWLY 63
Query: 452 ILWFARGQETVLEELSD--PQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQ 509
WF R ET +E+F + + V ++ + C V
Sbjct: 64 GCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKL-------- 115
Query: 510 PTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYCF 552
P + DE + Y F + ++
Sbjct: 116 --CPENFRDEDVYVCESRYSAKTKSFKKIKLWTMPVSSVRFVP 156
Score = 53.4 bits (128), Expect = 5e-08
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 50/179 (27%)
Query: 580 YYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMK 639
Y S++ Y + VYV P + + +
Sbjct: 16 YSQDCSFKNSMYHVGDYVYVEP------------------AEANLQPH------------ 45
Query: 640 GSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKL 699
I I +++ + +L FYRP T T + ++
Sbjct: 46 -----------IVCIERLWEDSAGE------KWLYGCWFYRPNETFHLA--TRKFLEKEV 86
Query: 700 YWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 758
+ SD +V +S + GKC V+ + Y++KT+ F +
Sbjct: 87 FKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDV-YVCESRYSAKTKSFKKIKL 144
>2c7p_A Modification methylase HHAI; DNA methyltransferase,
methyltransferase, base flipping, restriction system,
transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus
haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A*
1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A*
3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A*
9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Length = 327
Score = 98.6 bits (246), Expect = 4e-22
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 20/166 (12%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
LR +++FAG GG L+ G A ++ E+D A ++MN D ++
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFG--EKPEGDITQV---- 64
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
++ +P + ++LC G PCQ FS Q+ + + +L
Sbjct: 65 --------NEKTIP---DHDILCAGFPCQAFSISG--KQKGFEDSRGTLFFDIARIVREK 111
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1052
+P+ +ENV+NF + N L++ + ++ Y L A +
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDY 157
Score = 81.7 bits (202), Expect = 2e-16
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 1333 GNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHH 1392
G R + G+ L G K G L + R + RECAR G+PD +
Sbjct: 238 GERIYSTRGIAITLSAYG--------GGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSY 289
Query: 1393 KFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKE 1429
K H + + ++Q GN+V + + + I +L K
Sbjct: 290 KVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFKP 326
Score = 62.0 bits (151), Expect = 4e-10
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 1072 NSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHF 1131
+L +P+ +ENV+NF + N L++ + ++ Y L A +
Sbjct: 98 GTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDY 157
Query: 1132 GVSQTRRRAIVLA 1144
G+ Q R R ++
Sbjct: 158 GIPQKRERIYMIC 170
Score = 43.2 bits (102), Expect = 5e-04
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKI 851
LR +++FAG GG L+ G A ++ E+D A ++MN D ++
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFG--EKPEGDITQV 64
>2j2s_A Zinc finger protein HRX; transcription regulation, chromosomal
rearrangement, DNA-binding, bromodomain, polymorphism,
mixed lineage leukaemia; NMR {Homo sapiens} PDB: 2kkf_A
2jyi_A
Length = 72
Score = 81.2 bits (200), Expect = 7e-19
Identities = 27/53 (50%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 294 NEKHEGPRKKRCGVCEACQQP-DCGTCTACLDMVKFGGTGKAKQACIKRRCPN 345
+G R +RCG C CQ P DCG CT CLD KFGG KQ C R+C N
Sbjct: 2 GSVKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQN 54
>3qmd_A CPG-binding protein; structural genomics consortium, SGC, CXXC-type
Zn finger, DN binding, unmethylated CPG motifs; HET:
DNA; 1.90A {Homo sapiens} PDB: 3qmc_A 3qmb_A* 3qmg_A
3qmh_A 3qmi_A
Length = 79
Score = 80.6 bits (198), Expect = 1e-18
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 290 KGQLNEKHEGPRKKRCGVCEACQQP-DCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAV 348
+ + + CG CEAC++ DCG C C DM KFGG K +Q C R+C +A
Sbjct: 11 ENLYFQGQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRAR 70
Query: 349 Q 349
+
Sbjct: 71 E 71
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication,
replication; 1.70A {Mus musculus} PDB: 4dow_A*
Length = 163
Score = 80.5 bits (198), Expect = 2e-17
Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 29/162 (17%)
Query: 385 KKQIEWQGEGEEMD--SKLYYKSALIGGEE-----VKVGDYVMVESDDPNNPPPVGKVCY 437
++ W G + Y+ + + +KVG +V+++ +D P V K+
Sbjct: 4 RQTFSWVGRPLPNRKQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKK-PYVAKLIE 62
Query: 438 MYEDMKNFKTRKCHIL-WFARGQET------VLEELSDPQELFLLEACD---DVSLNAVA 487
++++ +KC + WF R E +L QE+F + D +++ +
Sbjct: 63 LFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETII 122
Query: 488 NLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYD 529
QV P+ PVD++ E + + + +++
Sbjct: 123 GPVQVVALA-----------PEEVIPVDQKSEETLFVKLSWN 153
Score = 32.4 bits (73), Expect = 0.58
Identities = 22/170 (12%), Positives = 54/170 (31%), Gaps = 25/170 (14%)
Query: 608 SKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYT-------------PAPFGIGYI 654
SK + RP+ + + + + YR++ + + + +
Sbjct: 1 SKTRQTFSWVGRPLPNRKQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKL 60
Query: 655 VAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFT--YQLDLNKLYWSD---EEEQVS 709
+ +F+ + V+ F R S +++W D + +++
Sbjct: 61 IELFQNGAEVP---PKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKIN 117
Query: 710 LSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTE 759
+ + G VV ++ + + ++N K F LP E
Sbjct: 118 VETIIGPVQVVALAPEEVIPV--DQKSEETLFVKLSWNKKD--FAPLPPE 163
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A
(DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
{Homo sapiens}
Length = 295
Score = 81.6 bits (201), Expect = 1e-16
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 28/177 (15%)
Query: 885 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKIL 943
+P+R L +F G L G+ A E + T + + G ++V D +
Sbjct: 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSV- 73
Query: 944 QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSA-----FKNSLIVS 998
++ + G +++ GG PC S +N + Y F+ ++
Sbjct: 74 -----------TQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLH 122
Query: 999 YL-SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDP 1054
RP F+L ENV + R L + + A
Sbjct: 123 DARPKEGDDRPFFWLFENVVAM----GVSDKRDISRFL-----ESNPVMIDAKEVSA 170
Score = 49.6 bits (118), Expect = 3e-06
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 794 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKIL 852
+P+R L +F G L G+ A E + + + G ++V D +
Sbjct: 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVT 74
Query: 853 QRVIDN 858
Q+ I
Sbjct: 75 QKHIQE 80
Score = 44.2 bits (104), Expect = 2e-04
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 1357 TNPEPMGKQGRV--LHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHR--QVGNAVPPP 1412
+N GK E+ ++ E R GFP H+ + R +G + P
Sbjct: 220 SNSIKQGKDQHFPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVP 279
Query: 1413 MGEALGREIKRALA 1426
+ L +K A
Sbjct: 280 VIRHLFAPLKEYFA 293
Score = 29.6 bits (66), Expect = 7.3
Identities = 23/155 (14%), Positives = 38/155 (24%), Gaps = 14/155 (9%)
Query: 1062 CCTRGSSAFKNSLIVSYL-SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQ 1120
G F+ ++ RP F+L ENV + R L +
Sbjct: 107 YEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAM----GVSDKRDISRFL-----E 157
Query: 1121 CTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPW--TVFSPRTSQLNVTISKKTYV 1178
+ A R R PG P + K
Sbjct: 158 SNPVMIDAKEVSA-AHRAR-YFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVRT 215
Query: 1179 STCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEEL 1213
T + + M++ +I +ME +
Sbjct: 216 ITTRSNSIKQGKDQHFPVFMNEKEDILWCTEMERV 250
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 4e-11
Identities = 92/656 (14%), Positives = 168/656 (25%), Gaps = 196/656 (29%)
Query: 578 HEYYNCVSYE-GE-QYKLKSCVYVNPDCFK--FKSKPQSAVQNNKRPV----EDEELYPE 629
H +++ + +E GE QY+ K + V D F F K VQ+ + + E + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD---VQDMPKSILSKEEIDHIIMS 57
Query: 630 AYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVE 689
+ K ++ V+KF VE
Sbjct: 58 KDAVSGTL---------------RLFWTLLSKQEE---------MVQKF---------VE 84
Query: 690 FTYQLDLNKLY--WSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYN 747
+++ L E+ Q S+ ++ D L F YN
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRM---YIEQRDRLY--------NDNQVF---AKYN 130
Query: 748 -SKTEEFTNLPTEALFLGSVSKG------KGKGKN-------QTNKPEEK--DEITEWPS 791
S+ + + L +AL +K G GK + K + K +I W +
Sbjct: 131 VSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLN 188
Query: 792 IARPLRCLEVFAGAGGLSRGLDKSGVAR----STWAIEFDSAAAAA----FKMNNPGCTV 843
+ V L +D + +R S + S A C +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 844 FVDD-------------CNKIL-----QRVIDNEVWGKGK----NQTNKPEEKDE----- 876
+ + C KIL ++V D + + DE
Sbjct: 249 VLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 877 -------ITEWPSIAR---PLRCLEVFAGAGGLSRGLDKSGVARS-TWAIEFDSAAATAF 925
+ P P R L + A + G+A W T
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRR-LSIIAE-------SIRDGLATWDNWKHVNCDKLTTII 359
Query: 926 KMN----NPG--------CTVFVDDCN---KILQRV---IDNEVCDDKKQKLPRKGEVEM 967
+ + P +VF + +L + + KL +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS---- 415
Query: 968 LCGGPPCQGFSGMN------RFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVA 1021
L P + + + A S++ Y + + + + +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFY 474
Query: 1022 FKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTP-CY-------------CIGCCTRGS 1067
IG+ + GS
Sbjct: 475 S--------------HIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 1068 SAFKNSLIV--SYLSY-CDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQ 1120
N+L Y Y CD L+ + +F+ ++ L +I
Sbjct: 520 IL--NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Score = 52.5 bits (125), Expect = 1e-06
Identities = 84/661 (12%), Positives = 186/661 (28%), Gaps = 179/661 (27%)
Query: 75 HLCPFDTGLVE---KNVIL----NFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYD 127
H F+TG + K+++ F C +D P+ + +E+ I I D
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHI----IMSKD 59
Query: 128 GGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIY--LVKLVIELCREDENAT--FED 183
+L + E + F++ V+ Y L+ + R+ T + +
Sbjct: 60 AVSGTLRLFW-----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 184 LLNTLQTATLP-ASVGVLSEDQL---------LRHAQFICDQVLGFDDASEGTDETQLIV 233
+ L A V LR A+ + + G G+ +T + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGV----LGSGKTWVAL 168
Query: 234 TPC--IRTLIQLAG----VTFGQRKK----LIASER--GRVKPVAAQKPTWSKATTTSLV 281
C + ++ + L ++ ++ P + S +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI- 227
Query: 282 RDVFENFFKGQLNEKHEGPRKKRC-----GVCEACQQPDCGTCTACLDMVKFGGTGKAKQ 336
+ + +L + + C V A +
Sbjct: 228 -----HSIQAELRRLLKSKPYENCLLVLLNVQNA----------KAWNAFNLS------- 265
Query: 337 AC---IKRRCPNKAVQDAEDSDIELDGDEVEEKVVKATTKPSWK---IKVTGSGKKQIEW 390
C + R K V D + + T K +K
Sbjct: 266 -CKILLTTR--FKQVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLD-----CRP 315
Query: 391 QGEGEEMDSKLYYKSALIGGEEVKVG-----DYVMVESDDPNN---------PPPVGKVC 436
Q E+ + + ++I E ++ G ++ V D P +
Sbjct: 316 QDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 437 YMY-----EDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQ 491
+ + T ++WF + V+ ++ + L+E S ++ ++
Sbjct: 375 FDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 492 VKHFPISENWAMQGGCPQPTPPVDREDERSF--YYRQTYDPLHARFCDVPNEMFSSGIDK 549
+ +A+ RS +Y + F +++ +D+
Sbjct: 434 ELKVKLENEYAL---------------HRSIVDHYN-----IPKTFD--SDDLIPPYLDQ 471
Query: 550 YCFS--------CDKAEEEEALSTP--NLR--------------------NLTEQGTTHE 579
Y +S + E + R N +Q ++
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 580 YY---NCVSYEGEQYKLKSCVY-VNPDCF--KFKSKPQSAVQNNKRPVEDEELYPEAYRK 633
Y N YE + + + + K+ + A+ EDE ++ EA+++
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA-----EDEAIFEEAHKQ 586
Query: 634 L 634
+
Sbjct: 587 V 587
Score = 41.0 bits (95), Expect = 0.003
Identities = 56/457 (12%), Positives = 109/457 (23%), Gaps = 169/457 (36%)
Query: 935 FVDD--CNKI---LQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRF------ 983
FVD+ C + + ++ E D L + + +F
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 984 -------------------NQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRN------ 1018
R Y ++ L + Y R +R
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 1019 ---FVAF-------KNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCY--CIGCCTRG 1066
V K + L + QC + + C
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKM---------DFKIFWLNLKNCNSP 195
Query: 1067 SSAFK--NSLIV----SYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCL------ 1114
+ + L+ ++ S D+ + +++ + + K CL
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNV 253
Query: 1115 --TQI----GYQCTFGTLQAGHFGVSQTRRRAI--VLAAAPGEVLPKYPEPWTVFSPRTS 1166
+ C L ++ TR + + L+AA + T +P
Sbjct: 254 QNAKAWNAFNLSCK--IL------LT-TRFKQVTDFLSAATTTHISLDHHSMT-LTPDEV 303
Query: 1167 QLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLP-EIQNG----CKM--EELP----- 1214
K+ + K+ P DLP E+ + E +
Sbjct: 304 --------KSLLL--KYLDCRP----------QDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 1215 ------YKENALSHFQR---------EMRKHVEKPTIISDHICKDMAPLVQARIKHIPTG 1259
+ L+ E RK ++ ++ HIPT
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-------------HIPTI 390
Query: 1260 E-GSDWRDLPNIEVRL---------------KDGTYT 1280
W D+ +V + K+ T +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 59.0 bits (142), Expect = 8e-10
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
++ E ES+++ EEQ+ K E + + E+ RE K+ ++ + + E
Sbjct: 77 ADRLTQEPESIRKWREEQR-KRLQELDA---ASKVM--EQEWREKAKKDLEEWNQRQSEQ 130
Query: 1493 KEEDGKENKSSETSADQEIDE 1513
E++ N+ ++ + Q+ D
Sbjct: 131 VEKNKINNRIADKAFYQQPDA 151
Score = 47.8 bits (113), Expect = 6e-06
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E R E+++K ++ V + E +K K++ E+ Q ++ E N+ R +
Sbjct: 85 ESIRKWREEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD- 142
Query: 1480 KENDDRKKGEIEDKEED 1496
K + + D
Sbjct: 143 -------KAFYQQPDAD 152
Score = 36.3 bits (83), Expect = 0.035
Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEES--VKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+E+ A E++ EK K + E +Q+E+ +K K + + ++ + +++
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD--KAFYQQPDADII 154
Score = 35.9 bits (82), Expect = 0.052
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 1463 QEDEKEGNEEVMRE--DENKENDDRKKGEIEDKEEDGKENKSSE---TSADQEIDE 1513
Q D E +R+ +E ++ +++ + + A ++++E
Sbjct: 76 QADRLTQEPESIRKWREEQRK-------RLQELDA--ASKVMEQEWREKAKKDLEE 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 3e-06
Identities = 70/441 (15%), Positives = 126/441 (28%), Gaps = 163/441 (36%)
Query: 961 RKGEVEM--LCGGPPCQGFSGMNRFNQRQ-----YSAFKNSLI------VSYLSYCDYYR 1007
+G ++ + GG QG + + F + + Y LI +S L
Sbjct: 150 GEGNAQLVAIFGG---QG-NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 1008 PRFFLLENVRNFVAFKNSMVLKMTMRC-----LTQIGYQCTF-GTLQAGHFDPTPCYCIG 1061
+ F N + + L+ L I C G +Q H+ T +G
Sbjct: 206 EKVF--TQGLNILEW-----LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-AKLLG 257
Query: 1062 C-------CTRGSSAFKNSLIVSYL-----SYCDYYRPRFFLLENVRNFVAFKNSMVLKM 1109
+G++ L+ + S+ ++ +VR +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF-------VSVRKAITV-------- 302
Query: 1110 TMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLN 1169
L IG +C +A + + + + E +P SP L+
Sbjct: 303 ----LFFIGVRCY----EA--YPNTSLPPSILEDSLENNEGVP---------SP---MLS 340
Query: 1170 VT-ISKKTYVSTCKWT-QSAP-YRTITV-----RD--VMSDLPEIQNGCKMEELPYKENA 1219
++ ++++ T P + + + V+S P+ +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ---------------S 385
Query: 1220 LSHFQREMRKHV--------------EKPTI------IS------------DHICKDMAP 1247
L +RK K ++ D I KD+
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 1248 LVQARIK----HIP---TGEGSDWRDL-PNIEVRLKDGTYTK--------KLQYTHN-DM 1290
IP T +GSD R L +I R+ D + + TH D
Sbjct: 446 -NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 1291 KNGKSST-GAL-------RGV 1303
G +S G L GV
Sbjct: 505 GPGGASGLGVLTHRNKDGTGV 525
Score = 49.3 bits (117), Expect = 1e-05
Identities = 95/546 (17%), Positives = 149/546 (27%), Gaps = 227/546 (41%)
Query: 464 EELSDPQEL---FL------LEACDDVSLNAVANLCQVKHFPISENWAMQGG-------- 506
+E + P EL FL +E + V NLC + F EN ++G
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-LTEF---ENCYLEGNDIHALAAK 107
Query: 507 --CPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDKAEEEEALS 564
T V ++ Y AR DK + AL
Sbjct: 108 LLQENDTTLVKTKELIKNYIT-------ARIMA------KRPFDK--------KSNSAL- 145
Query: 565 TPNLRNLTE-----------QGTTHEY-------YNCVSYEG--EQY------KLKSCVY 598
R + E QG T +Y Y +Y L +
Sbjct: 146 ---FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELIR 200
Query: 599 VNPDCFKFKSKP---QSAVQN-NKRPVEDEELY----PEAY-----RKLSDYMKGSNA-- 643
D K ++ ++N + P +D Y P + +L+ Y+ +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKD---YLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 644 YTPAPF----------GIGYIVAIFKKKGKKNVSASDVFLTVKKFYR------------- 680
+TP G + A+ ++ +D + + F+
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVA-------IAETD---SWESFFVSVRKAITVLFFIG 307
Query: 681 -------------PENTHRSVEF-----TYQL---DLNK-------------LYWSDEEE 706
P S+E + L +L + L +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL---PAGK 364
Query: 707 QVSLSDVQG-KCFVVC---ED----NLQI-------STDRW----SSRGP---HRFY--- 741
QV +S V G K VV + NL + D+ S R +RF
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 742 --FNEAYNSKTEEFTNLPTEALFLGSVS-KGK---------GKGKN----QTNKPEE-KD 784
F+ + N + L +VS K G + + E D
Sbjct: 425 SPFHSHLLVPASDLIN---KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 785 EITE----WPSI--ARPLRCLEVFAGAGGLS-------RGLDKSGVARSTWAIEFDSAAA 831
I W + + L+ F G GG S R D +GV R A D
Sbjct: 482 CIIRLPVKWETTTQFKATHILD-F-GPGGASGLGVLTHRNKDGTGV-RVIVAGTLDINPD 538
Query: 832 A--AFK 835
FK
Sbjct: 539 DDYGFK 544
Score = 48.5 bits (115), Expect = 2e-05
Identities = 92/604 (15%), Positives = 172/604 (28%), Gaps = 226/604 (37%)
Query: 561 EALSTPNLRNLT-EQGTTHEYYNCVS----YEGEQYKLKSCVYVNPDCF-KFKSKPQSAV 614
+A ST R LT G+ E+ V + Q L+ + F K +P
Sbjct: 2 DAYST---RPLTLSHGSL-EHVLLVPTASFFIASQ--LQ-------EQFNKILPEPTEGF 48
Query: 615 QNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLT 674
+ P EL F +GY+ +S V
Sbjct: 49 AADDEPTTPAELV-------------------GKF-LGYV-------------SSLV--- 72
Query: 675 VKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSS 734
P + + LN E + +D+ + + + T +
Sbjct: 73 -----EPSKVGQFDQV-----LNLCLTEFENCYLEGNDIHA---LAAKLLQENDTTLVKT 119
Query: 735 RGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIAR 794
+ + Y A F ALF +V +G + + +A
Sbjct: 120 KELIKNYI-TARIMAKRPFDKKSNSALF-RAVGEGNAQ-------------L-----VA- 158
Query: 795 PLRCLEVFAGAGGLSRGLDKSGVARSTWAI------EFDSAAAAAFKMNNPGCTVFVDDC 848
+F G G ++ R + + +A D
Sbjct: 159 ------IFGGQGNTDDYFEE---LRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDA 205
Query: 849 NKILQRVIDNEVWGKGKNQTNKPEEKDEITEWPSIARPLRCL------EVFAGAGGLS-- 900
K+ + ++ W + + T P++ D + P I+ PL + V A G +
Sbjct: 206 EKVFTQGLNILEWLENPSNT--PDK-DYLLSIP-ISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 901 ------RGLDKSGVAR-----------STWAIEFDSAAATAFKM---------------- 927
+G +G ++ +W F + A +
Sbjct: 262 ELRSYLKGA--TGHSQGLVTAVAIAETDSWE-SFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 928 --------------NNPGCTVFVDDCNK-ILQRVID--NEVCDDKKQKLPRKGEVE---- 966
P + + + + +Q ++ N LP +VE
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-------SHLPAGKQVEISLV 371
Query: 967 -----MLCGGPPC--QGF----------SGMNR----FNQRQYSAFKNS-LIVS--YLSY 1002
++ GPP G SG+++ F++R+ F N L V+ + S
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK-LKFSNRFLPVASPFHS- 429
Query: 1003 CDYYRP--RFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF-GT-LQAGHFDPTP-- 1056
P + V+N V+F +++ + Y TF G+ L+ +
Sbjct: 430 -HLLVPASDLINKDLVKNNVSFNAKD-IQIPV-------Y-DTFDGSDLRVLSGSISERI 479
Query: 1057 CYCI 1060
CI
Sbjct: 480 VDCI 483
Score = 43.9 bits (103), Expect = 5e-04
Identities = 38/223 (17%), Positives = 58/223 (26%), Gaps = 94/223 (42%)
Query: 811 GLD---KSGVARSTWAIEFDSAAAAAFKM----------NNPGCTVFVDDCNKILQRVID 857
G+D S A+ W + A NNP K +R+ +
Sbjct: 1632 GMDLYKTSKAAQDVW----NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-GKRIRE 1686
Query: 858 N------EVWGKGKNQTNK----------------PEEKDEITEW--P-----SIARPLR 888
N E GK +T K + T++ P A
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA-AFE 1745
Query: 889 CLE---------VFAG------------AGGLS----------RGLDKSGVARSTWAIEF 917
L+ FAG A +S RG+ A+
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM-----TMQV-AVPR 1799
Query: 918 DSAAATAFKM--NNPGCTVFVDDCNKILQRVID------NEVC 952
D + + M NPG V + LQ V++ +
Sbjct: 1800 DELGRSNYGMIAINPG-RVAASFSQEALQYVVERVGKRTGWLV 1841
Score = 36.6 bits (84), Expect = 0.084
Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 78/208 (37%)
Query: 107 EGGIPVKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEY----RPFMKTVMEK 162
E + V P + I Q L F++I L EP+E + P T E
Sbjct: 17 EHVLLV----PTASFFI-----ASQ----LQEQFNKI-LPEPTEGFAADDEP--TTPAE- 59
Query: 163 IYLV----KLVIELCREDENATFEDLLNT---------LQ-------TATLPASV--GVL 200
LV V L + F+ +LN L+ A L ++
Sbjct: 60 --LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 201 SEDQLLR---HAQFICDQVLG-------FDDASEGT-----------------DETQLIV 233
+L++ A+ + + F EG +E + +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 234 T---PCIRTLIQLAGVTFGQRKKLIASE 258
+ LI+ + T +LI +
Sbjct: 178 QTYHVLVGDLIKFSAETL---SELIRTT 202
Score = 35.4 bits (81), Expect = 0.19
Identities = 67/461 (14%), Positives = 120/461 (26%), Gaps = 167/461 (36%)
Query: 1046 TLQAGHFD-----PTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRP--------RF--F 1090
TL G + PT + I ++ F L + P +F +
Sbjct: 10 TLSHGSLEHVLLVPTASFFI--ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 1091 LLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAG--HFGVSQTRRRAIVLAAAPG 1148
+ V + VL + + + L+ H LAA
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFEN-----CY--LEGNDIH-----------ALAAK-- 107
Query: 1149 EVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTC--------KWTQSAPYRTITVRDVMSD 1200
L + T+ + K Y++ K + SA +R + +
Sbjct: 108 --LLQ--------ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA--- 154
Query: 1201 LPEI------QNGCKMEELPYKENALSHFQREMRK-HVEKPTIISDHICKDMAPLVQARI 1253
++ Q G N +F+ E+R + ++ D + K A + I
Sbjct: 155 --QLVAIFGGQ-G----------NTDDYFE-ELRDLYQTYHVLVGD-LIKFSAETLSELI 199
Query: 1254 KHIPT-----GEGSD---WRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCS 1305
+ +G + W L++ + T Y + S
Sbjct: 200 RTTLDAEKVFTQGLNILEW---------LENPSNTPDKDY-----------------LLS 233
Query: 1306 CATSAKTPCDPL--ARQFGTLIPWC----LPHTGNRHNNWCGLYGRLQ------------ 1347
S C PL Q + G + G G Q
Sbjct: 234 IPIS----C-PLIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 1348 -WNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQG-FPDHHKFHGTILEKHRQV 1405
W FF + + G R +P + +ILE +
Sbjct: 288 SWESFFVSVRKAITVLFFIG----------------VRCYEAYP-NTSLPPSILEDSLEN 330
Query: 1406 GNAVPPPMGEALG-REIKRALAEKEKKVEE--KKKAEEESV 1443
VP PM L + + + + V + + V
Sbjct: 331 NEGVPSPM---LSISNLTQ--EQVQDYVNKTNSHLPAGKQV 366
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A
(DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
{Homo sapiens}
Length = 230
Score = 47.4 bits (112), Expect = 1e-05
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 48/162 (29%)
Query: 865 KNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 924
+ N E + + W +P+R L +F + + L G D
Sbjct: 14 RESENPLEMFETVPVWRR--QPVRVLSLF---EDIKKELTSLGF----LESGSD------ 58
Query: 925 FKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFN 984
PG V D +++ + G +++ G P G +
Sbjct: 59 -----PGQLKHVVDVTDTVRK------------DVEEWGPFDLVYGATPPLGHTCDRP-- 99
Query: 985 QRQYSAFKNSLIVSYLSYCDYYRPR-------FFLLENVRNF 1019
+ + + Y RP+ F++ +
Sbjct: 100 -------PSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVL 134
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 46.6 bits (111), Expect = 1e-05
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD- 1484
+ KE+K E + EE + Q EE + + E E+ DEK N E + D
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 1485 --RKKGEIE 1491
R K E+E
Sbjct: 62 ILRVKAEME 70
Score = 28.9 bits (65), Expect = 9.9
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 1474 MREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
M E K + + EI + + E E SA+Q
Sbjct: 1 MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVAN 46
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 45.4 bits (108), Expect = 1e-04
Identities = 10/103 (9%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+++ + + A + +K E + E + D ++ +
Sbjct: 901 WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS--NSDLLSILAQLTELNY 958
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
N + E K+ + + S+ + + A+ +
Sbjct: 959 NGVPE-----LTERKDTFFAQQWTGVKSSAETYKNTLLAELER 996
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis,
GDP, GMP, dynamin related, large GTPase family. GMPPNP,
GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1
c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Length = 592
Score = 44.6 bits (104), Expect = 3e-04
Identities = 18/95 (18%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTE---EEQKGKEETEKEEPIQEDEKEGNE 1471
+A + + + E+ +E+K+++ +E +KQ E + + E+E + +E +
Sbjct: 500 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE--Q 557
Query: 1472 EVMREDENKENDDRKKGEIEDKEEDGKENKSSETS 1506
E + ++ ++ K EI+D + + K+ S
Sbjct: 558 EQLLKEGFQKESRIMKNEIQDLQTKMRRRKACTIS 592
Score = 39.9 bits (92), Expect = 0.007
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 1419 REIKRALAEKEKKVEE---KKKAEEESVKQTEEEQKGKEET--EKEEPIQEDEKEGNEEV 1473
+ + L EKEK++E K ++ + S K E Q+ E+ +KE QE K+ E++
Sbjct: 476 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535
Query: 1474 MRE-----DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ E + K E E ++G + +S EI +
Sbjct: 536 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMK--NEIQD 578
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.6 bits (103), Expect = 6e-04
Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+++ + EE K A + EE K ++E + + ++ +E ++
Sbjct: 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 1475 REDENKEND-DRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
E E ++ + ++ ++E+ + E E +ETK
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Score = 43.2 bits (102), Expect = 8e-04
Identities = 13/109 (11%), Positives = 31/109 (28%), Gaps = 1/109 (0%)
Query: 1415 EALGREIKRALAEKEKKVE-EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
+ L E + K+ + E K + + + ++ + E +
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 1474 MREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ + +++ K +E Q E T +E D
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015
Score = 42.4 bits (100), Expect = 0.001
Identities = 11/103 (10%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+++ L E + ++K E+ ++ E+ E ++ + E + +E
Sbjct: 920 KKLHIGL-ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD-VERLRMSEE 977
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+N + ++++ ++ + + I+E + +
Sbjct: 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Score = 40.1 bits (94), Expect = 0.007
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVK------QTEEEQKGKEETEK---EEPIQEDEKEGN 1470
+ ++L EK +E E E ++ + EE+ +E I + KE +
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ + +E D+ K E E + KE + + +E++ + +
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052
Score = 38.9 bits (91), Expect = 0.014
Identities = 17/96 (17%), Positives = 38/96 (39%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EA + ++E K+ + ++ K+T EE K + E E+ + E +++
Sbjct: 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
++E + EI + E ++ + D
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKLVEETKQLELDLN 1073
Score = 38.9 bits (91), Expect = 0.017
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 1419 REIKRALAEKE---KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
+R +A++E K+E + + + E + + K I E KE + +
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI-MQLQRK---IDEQNKEYKSLLEK 950
Query: 1476 ----EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADET 1520
E ++ + ++E +E K++ +E+ +
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Score = 30.1 bits (68), Expect = 8.0
Identities = 8/93 (8%), Positives = 30/93 (32%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
KA +E + + + E+ + E++ + +
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ ++ + ++ + E + E +++ + E
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 41.9 bits (97), Expect = 8e-04
Identities = 18/109 (16%), Positives = 44/109 (40%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
M A E+ E+ K AEE + EE + +++ + + + N +
Sbjct: 102 MESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRK 161
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ K ++++ E E + +EN + A +++ + M +++
Sbjct: 162 YQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKEN 210
Score = 39.6 bits (91), Expect = 0.005
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEE--QKGKEETEKEEPIQEDEKEGNEE 1472
E+ K AE K + EK++ E E +++ EE K EK E KE E
Sbjct: 154 ESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREA 213
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKE 1499
+ + K E K ++ KE
Sbjct: 214 HFAAMLERLQEKDKHAEEVRKNKELKE 240
Score = 38.8 bits (89), Expect = 0.007
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 1415 EALGREIKRALAEKEKKVEE------------KKKAEEESVKQTE--EEQKGKEETEKEE 1460
EA + L EK+K EE K A+E+ ++ E +E + +E E +
Sbjct: 110 EAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLK 169
Query: 1461 PIQEDEKEGNEEVMREDENKENDDRKKGE-IEDKEEDGKENKSSETSADQE 1510
+ E + E + R E N + E + K E KEN+ + +A E
Sbjct: 170 HLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLE 220
Score = 37.3 bits (85), Expect = 0.023
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 13/126 (10%)
Query: 1407 NAVPPPMGEALGREIKRAL-----------AEKEKKVEEKKKAEEESV--KQTEEEQKGK 1453
NA P + EI++ L AE K + EK++ E E + E K
Sbjct: 33 NASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIK 92
Query: 1454 EETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
EK E KE E + + K E + + N + + ++ +
Sbjct: 93 MAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQK 152
Query: 1514 VMTADE 1519
+ + E
Sbjct: 153 MESNKE 158
Score = 37.3 bits (85), Expect = 0.029
Identities = 15/101 (14%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQ--TEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+ K LA+K + +E ++A ++ + E+++ +E ++ + + +E
Sbjct: 88 NNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKE 147
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ + ++RK E E + ++ + + I+E
Sbjct: 148 KLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEE 188
Score = 36.1 bits (82), Expect = 0.057
Identities = 20/122 (16%), Positives = 48/122 (39%)
Query: 1400 EKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE 1459
E+ + + + E E + E+ K A+E+ ++ E ++ +E
Sbjct: 56 ERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAA 115
Query: 1460 EPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
+ EK+ + E +R+ +EN++ K E + + NK + + E+ + +
Sbjct: 116 MLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKR 175
Query: 1520 TK 1521
Sbjct: 176 EH 177
Score = 31.5 bits (70), Expect = 2.1
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEE--ESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
+ E E + E+ K A+E ++ +E + E +QE +K
Sbjct: 171 LAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHA- 229
Query: 1471 EEVMREDENKE 1481
EEV + E KE
Sbjct: 230 EEVRKNKELKE 240
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 41.6 bits (98), Expect = 8e-04
Identities = 13/69 (18%), Positives = 22/69 (31%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
+ E ++ EEE+ Q EEE G E + E K
Sbjct: 12 ATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAEL 71
Query: 1487 KGEIEDKEE 1495
+ ++ + E
Sbjct: 72 EAKLSEMEH 80
Score = 41.3 bits (97), Expect = 0.001
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKE-------EPIQEDEKEGNEEVMREDENKENDDR 1485
EK+ E+ + + E EQ +EE + P++E E E + E
Sbjct: 4 GEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAA 63
Query: 1486 KKGEIEDKEEDGKENK 1501
K +I + E E +
Sbjct: 64 AKAQIAELEAKLSEME 79
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 43.3 bits (102), Expect = 8e-04
Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQT-----EEEQKGKEETEKEEPIQEDEKEG 1469
+ I+ ++ EKKK +++ + EE + K + EK + +K
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
++ ++ ED+N + +K +E++ D N + E + + ++ E+
Sbjct: 990 DDILIMEDQNNKLTKERK-LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Score = 41.4 bits (97), Expect = 0.003
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQT-------EEEQKGKEETEKEEPIQEDEKEGNE 1471
++ LAE+E+K + K + + ++E+K ++E EK + E E
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073
Query: 1472 EVMREDEN-----KENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E + E + K +K+ E++ ++ S + +A ++I E
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Score = 39.8 bits (93), Expect = 0.009
Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE---------TEKEEPIQEDEKEGNEE 1472
K+ L E ++E + + EEE +Q + E+K ++ E+E Q+ + E
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Query: 1473 VMR----EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ ED+ +D+ ++++ + T+ +E ++ + K+
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Score = 38.3 bits (89), Expect = 0.027
Identities = 14/105 (13%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 1415 EALGREIKRALAEKEKKVEE--KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
E ++++ + ++++ + ++ EEE+ +Q + +K + + ++ + ++
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 1473 VMREDENKENDDRKK---GEIEDKEEDGKENKSSETSADQEIDEV 1514
E K ++R + ++EE K + + I E+
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Score = 37.9 bits (88), Expect = 0.033
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E ++ EK + KK E++ + E+Q K E++ ++E + +
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIM--EDQNNKLTKERKL-LEERVSDLTTNLA 1021
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
E+E +N + K + E + + E + QE++++ E +
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Score = 35.6 bits (82), Expect = 0.16
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
+IKR L E E ++ AE ++ + Q K+E E + + E E +++ +
Sbjct: 1059 EKIKRKL-EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+E + I D +ED + K++ A+++ +
Sbjct: 1118 IRE----LESHISDLQEDLESEKAARNKAEKQKRD 1148
Score = 35.6 bits (82), Expect = 0.17
Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE--- 1471
L ++ + E+E + + +E S K ++ + E+ + ++ E E
Sbjct: 1084 AELKAQLAKK--EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 1472 -EVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E + D ++E + K E+ED + + S ++ D+
Sbjct: 1142 AEKQKRDLSEELEALKT-ELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 34.8 bits (80), Expect = 0.31
Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE---------EPIQED 1465
+ L E + KE+K+ E++ ++ + EEE+ K E +
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Query: 1466 EKEGNEEVMREDENKENDDRK-KGEIEDKEEDGKENKSSETSADQEIDEVMT 1516
E++ +E+ + E + +I + + E K+ ++E+ +
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Score = 34.4 bits (79), Expect = 0.34
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 1420 EIKRALAEKEKKVEEK-KKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR--- 1475
K K KK+E+ E+++ K T+E + +E +E+E + + +
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Query: 1476 --EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
E E + R K E + ++E K + E + +++
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Score = 32.5 bits (74), Expect = 1.5
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
+ KK+ E + + + E E+ + + EK+ + D E E + E E+
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ---KRDLSEELEALKTELED 1162
Query: 1480 KENDDRKKGEIEDKEEDGKENK 1501
+ + E+ + ++K
Sbjct: 1163 TLDTTATQQELRGSDYKDDDDK 1184
Score = 31.0 bits (70), Expect = 4.7
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E + + KK E ++ E + EEE++ ++ + E+ + + EE +
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARI-EEEEERSQQLQAEKKKMQQQMLDLEEQL 964
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
E+E R+K ++E DGK K + E
Sbjct: 965 EEEEAA----RQKLQLEKVTADGKIKKMEDDILIME 996
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 40.6 bits (96), Expect = 0.001
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 797 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAAAAFKMN-----NPGCTVFVD 846
L+++AG+G L SRG A S +E D +AA N G T+
Sbjct: 47 AVLDLYAGSGALGLEALSRG------AASVLFVESDQRSAAVIARNIEALGLSGATLRRG 100
Query: 847 DCNKILQR 854
++
Sbjct: 101 AVAAVVAA 108
Score = 39.1 bits (92), Expect = 0.004
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 16/68 (23%)
Query: 888 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVD 937
L+++AG+G L SRG A S +E D +A N G T+
Sbjct: 47 AVLDLYAGSGALGLEALSRG------AASVLFVESDQRSAAVIARNIEALGLSGATLRRG 100
Query: 938 DCNKILQR 945
++
Sbjct: 101 AVAAVVAA 108
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels,
cell WALL, peptidoglycan-anchor, secreted, hydrolase;
HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Length = 937
Score = 42.3 bits (98), Expect = 0.001
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 1391 HHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQ 1450
HH HG + + E + A E E + + E+ KQ E E
Sbjct: 4 HHHHHGHHHQLENLYFQGEETAVPEN-------SGANTELVSGESEHSTNEADKQNEGEH 56
Query: 1451 KGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + EK E +E + + EE E + SA+ +
Sbjct: 57 ARENKLEKAE---GVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK 113
Score = 39.2 bits (90), Expect = 0.012
Identities = 13/95 (13%), Positives = 26/95 (27%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
+ + EE +V + E E E +K+ E RE++ ++ +
Sbjct: 9 GHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGV 68
Query: 1486 KKGEIEDKEEDGKENKSSETSADQEIDEVMTADET 1520
+ + A A E
Sbjct: 69 ATASETASPASNEAATTETAEAASAAKPEEKASEV 103
Score = 34.9 bits (79), Expect = 0.23
Identities = 14/89 (15%), Positives = 29/89 (32%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
+ + V E AE + E E K + + +E E E+ ++ D K +
Sbjct: 98 EKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKT 157
Query: 1486 KKGEIEDKEEDGKENKSSETSADQEIDEV 1514
K + + K + + +
Sbjct: 158 LKPKEIKFNSWEELLKWEPGAREDDAINR 186
Score = 33.4 bits (75), Expect = 0.68
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 1/113 (0%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
E A + + K EE++ + E E K + E + E
Sbjct: 68 VATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSA-EAKPKSDKETEAKPEA 126
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ E + +K D ++ ++ + +E++ +
Sbjct: 127 TNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAR 179
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 40.6 bits (96), Expect = 0.002
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 18/78 (23%)
Query: 888 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAA-------TAFKMNNPGCTVF 935
CL+ FAG+G L SR A+ +E D A K ++ V
Sbjct: 56 ECLDGFAGSGSLGFEALSRQ------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI 109
Query: 936 VDDCNKILQRVIDNEVCD 953
L++ + D
Sbjct: 110 NQSSLDFLKQPQNQPHFD 127
Score = 38.7 bits (91), Expect = 0.005
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 18/75 (24%)
Query: 797 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAAA-------AFKMNNPGCTVF 844
CL+ FAG+G L SR A+ +E D A K ++ V
Sbjct: 56 ECLDGFAGSGSLGFEALSRQ------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI 109
Query: 845 VDDCNKILQRVIDNE 859
L++ +
Sbjct: 110 NQSSLDFLKQPQNQP 124
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 39.5 bits (93), Expect = 0.004
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 797 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAAAAFKMN-----NPGCTVFVD 846
+CL+ FAG+G L SR A IE D A + N V
Sbjct: 57 QCLDCFAGSGALGLEALSRY------AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS 110
Query: 847 DCNKILQR 854
+ L +
Sbjct: 111 NAMSFLAQ 118
Score = 37.9 bits (89), Expect = 0.010
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 888 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVD 937
+CL+ FAG+G L SR A IE D A + N V
Sbjct: 57 QCLDCFAGSGALGLEALSRY------AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS 110
Query: 938 DCNKILQR 945
+ L +
Sbjct: 111 NAMSFLAQ 118
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 39.8 bits (92), Expect = 0.009
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTE-EEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
A AE E + E + E SV Q + + Q ETE E ++ +K E++
Sbjct: 717 ESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE--LERVKKVREMELIYAR 774
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
E + K ++ + E + + D + E +
Sbjct: 775 AQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818
Score = 39.0 bits (90), Expect = 0.015
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 3/114 (2%)
Query: 1397 TILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEET 1456
+ Q V +AL R ++ A+ E K E + + E+E +G+ E
Sbjct: 634 VVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQ---RLEQEARGRLER 690
Query: 1457 EKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+K E EK E + E + + + E + E S Q
Sbjct: 691 QKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQA 744
Score = 34.8 bits (79), Expect = 0.26
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 1/103 (0%)
Query: 1419 REIKRALAEKEKKVEEKK-KAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
+ A E E V + K KA+ +++ E ++ K+ E E + E ++
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQL 787
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADET 1520
N E K+ ++ + ++ + + T
Sbjct: 788 ANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKST 830
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE;
2.33A {Homo sapiens}
Length = 168
Score = 37.8 bits (87), Expect = 0.010
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE-EPIQEDEKEGNEEV 1473
E+L RE++ E + K + E E++ + + +Q EEV
Sbjct: 47 ESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEV 106
Query: 1474 MREDENKENDDRKKGEIEDKEEDGKENKSS 1503
N E + ++ E +D ++ K++
Sbjct: 107 KHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136
Score = 29.3 bits (65), Expect = 5.4
Identities = 9/93 (9%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 1419 REIKRALAEKEKKVEEKKKA-EEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
R ++ + ++ +K + + E E + + + + + +QE+ K + + +
Sbjct: 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
++ E ++ + + + + + + Q+
Sbjct: 118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ 150
Score = 29.3 bits (65), Expect = 6.4
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 1424 ALAEKEKKVEEKKKAEEESVKQTEEEQKG---KEETEKEEPIQEDEKEGNEEVMREDENK 1480
+LA ++ +K+ E + +TE + K TE + I + E E R +
Sbjct: 2 SLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILE 61
Query: 1481 ENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ + + + + + + I +
Sbjct: 62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD 94
Score = 28.9 bits (64), Expect = 8.1
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+L E+K EK E+K+A++ E++K E + ++ ++ +EV
Sbjct: 100 TSLQEEVKHLKHNLEKVEGERKEAQDM--LNHSEKEKNNLEIDLNYKLKSLQQRLEQEVN 157
Query: 1475 REDENKE 1481
K
Sbjct: 158 EHKVTKA 164
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor,
S active protein, toxin; 3.04A {Streptococcus pyogenes
serotype M1} PDB: 2xny_M
Length = 155
Score = 36.9 bits (84), Expect = 0.015
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRK 1486
+ ++ K E +++ + K EE EK + ED+++ E ++E + ++ D K
Sbjct: 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ-QDYDLAK 84
Query: 1487 KGEIEDKEEDGKENKSSETSADQEIDEV 1514
+ D++ KE + + + + ID+
Sbjct: 85 ESTSWDRQRLEKELEEKKEALELAIDQA 112
Score = 34.2 bits (77), Expect = 0.15
Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ + K+ +++K E + + ++ KE T + E E E +E +
Sbjct: 46 GRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEAL 105
Query: 1475 R--EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
D+ + R ++ EE K + + A Q+ + ++
Sbjct: 106 ELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEK 152
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus,
S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 36.9 bits (84), Expect = 0.017
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQT----EEEQKGKEETEKEEPIQEDEKEGN 1470
E + K + EK V+EK++ E ++ E K K ++ ++ +
Sbjct: 8 EPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDG 67
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ K ++ ++EE + K + +A +E++
Sbjct: 68 TTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELER 110
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T
1pny_T 1vor_W ...
Length = 237
Score = 37.4 bits (87), Expect = 0.019
Identities = 10/67 (14%), Positives = 19/67 (28%)
Query: 1432 VEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIE 1491
V + EE + + Q E + E + E+ E + G
Sbjct: 171 VLPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDS 230
Query: 1492 DKEEDGK 1498
+ D +
Sbjct: 231 EDNSDAQ 237
Score = 35.1 bits (81), Expect = 0.12
Identities = 8/63 (12%), Positives = 18/63 (28%)
Query: 1431 KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEI 1490
++ ++ E Q E +E+ + EEV E +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 1491 EDK 1493
+ +
Sbjct: 235 DAQ 237
Score = 35.1 bits (81), Expect = 0.14
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 1453 KEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
EE E E + + E+ + + E K E ++N +++ + +
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSD 235
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 37.7 bits (87), Expect = 0.021
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 1419 REIKRALAEKE---KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
E+ R L E ++ EE+ + E + EEE K ++ E + + +
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEEIK-----TVTNNLKSLEAQAEKYSQK 217
Query: 1476 EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
ED+ +E ++++ E + + S T ++ ID+
Sbjct: 218 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Score = 37.7 bits (87), Expect = 0.021
Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAE------EESVKQTEEE----QKGKEETEKE----- 1459
+A+ ++++ +KE ++ +AE E+ KQ E+E QK + TE E
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61
Query: 1460 EPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
E +++ +++ + + + + I+ EE+ + +A Q+++E
Sbjct: 62 EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEE 115
Score = 35.8 bits (82), Expect = 0.083
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVK-----QTEEEQKGKEETEKEEP---IQEDE 1466
+ +K A + E ++ AE + Q EE+ + + ++E E
Sbjct: 58 DKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117
Query: 1467 KEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
K +E + + + ++E +E KE K AD++ +EV
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEV 165
Score = 35.0 bits (80), Expect = 0.15
Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR--ED 1477
+++ L +KK++ + ++ + ++ Q+ E EK+ E + ++ E+
Sbjct: 38 QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
E +R ++ EE K SE +E +
Sbjct: 98 ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKME 142
Score = 34.2 bits (78), Expect = 0.27
Identities = 16/97 (16%), Positives = 42/97 (43%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDR 1485
+E+ KV E + ++E + +E Q + + E+ ++ E+ + V+ E + + ++R
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 182
Query: 1486 KKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ E +E K+ + + + +D
Sbjct: 183 AELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKED 219
Score = 32.7 bits (74), Expect = 0.83
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEET--EKEEPIQEDEKEGNEE 1472
+ + +K A+ EK +++ K EEE +K ++ K E E + + EK ++
Sbjct: 198 KTVTNNLKSLEAQAEKYSQKEDKYEEE-IKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 256
Query: 1473 VMREDENKENDDRKKGEIEDKEED 1496
K E++ D
Sbjct: 257 EDELYAQKLKYKAISEELDHALND 280
Score = 31.5 bits (71), Expect = 1.9
Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 1429 EKKVEEKKKAEEESVKQTE--EEQKGKEETEKEEPIQEDEKEGNEEVMRE-----DENKE 1481
+KK++ K +E ++ + + E K E ++ EDE ++ ++ D+ E
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQ--LEDELVSLQKKLKATEDELDKYSE 62
Query: 1482 NDDRKKGEIEDKEEDGKENKSSETSADQEIDEV 1514
+ ++E E+ + ++ S ++ I
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95
Score = 29.6 bits (66), Expect = 7.4
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
EA + + + E++++ +E+ + E ++ + EK I + E E + +
Sbjct: 208 EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS--IDDLEDELYAQKL 265
Query: 1475 REDENKENDDRKKGEIED 1492
+ E D ++
Sbjct: 266 KYKAISEELDHALNDMTS 283
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 36.8 bits (86), Expect = 0.023
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 797 RCLEVFAGAGG-----LSRGLDKSGVARSTWAIEFDSAAAAAFKMN------NPGCTVFV 845
R L++FAG+GG +SRG + +E + A A + N T+
Sbjct: 34 RVLDLFAGSGGLAIEAVSRG------MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK 87
Query: 846 DDCNKILQR 854
+ + +
Sbjct: 88 MEAERAIDC 96
Score = 35.6 bits (83), Expect = 0.053
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 17/69 (24%)
Query: 888 RCLEVFAGAGG-----LSRGLDKSGVARSTWAIEFDSAAATAFKMN------NPGCTVFV 936
R L++FAG+GG +SRG + +E + A + N T+
Sbjct: 34 RVLDLFAGSGGLAIEAVSRG------MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK 87
Query: 937 DDCNKILQR 945
+ + +
Sbjct: 88 MEAERAIDC 96
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled
post-transcriptional, gene regulation, chaperone; HET:
EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 37.4 bits (86), Expect = 0.026
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
+ +A +KK+ E K E EE+ + + I+ + E + ++++
Sbjct: 71 DTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130
Query: 1480 KENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
K+ E+ + E+ E +S + + I E K
Sbjct: 131 KK-------EMLELEKLALELESLVENEVKNIKETQQIIFKK 165
Score = 34.7 bits (79), Expect = 0.16
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESV---KQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
EI +K ++ KA + K ++ K + + E + +
Sbjct: 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ K ++ + + E+ + K A++EI+ + + K
Sbjct: 79 IQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124
Score = 34.7 bits (79), Expect = 0.17
Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKE--ETEKEEPIQEDEKEGNEEVMRED 1477
+K +++ E+ +++ K+ E + +E EE I ++ +
Sbjct: 57 ALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENL 116
Query: 1478 ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+N EI+ K E ++ K ++ E+ + E +
Sbjct: 117 QN---------EIKRKSEKQEDLKKEMLELEKLALELESLVENE 151
Score = 34.7 bits (79), Expect = 0.20
Identities = 13/80 (16%), Positives = 34/80 (42%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+L E A + E + + E +++E+++ K+E + E + + + E +
Sbjct: 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEV 152
Query: 1475 REDENKENDDRKKGEIEDKE 1494
+ + + KK E ++
Sbjct: 153 KNIKETQQIIFKKKEDLVEK 172
Score = 33.5 bits (76), Expect = 0.36
Identities = 10/109 (9%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTE--EEQKGKEETEKEEPIQEDEKEGNEEVMRED 1477
++ + +V + ++ +++ + +++ + ++E+E E++ +E +
Sbjct: 50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQA 109
Query: 1478 ENKEND-----DRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
+ + RK + ED +++ E + + ++ + +
Sbjct: 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKET 158
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase;
2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 37.1 bits (85), Expect = 0.029
Identities = 14/98 (14%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 1423 RALAEKEKKVEEKKKAEEESVKQTEEEQKG-KEETEKEEPIQEDEKEGNEEVMRED---- 1477
+ +E K + KKK E + + + + + ++ +E +E +EV++
Sbjct: 129 KESSESNIK-DIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLT 187
Query: 1478 --ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ ++ + E+ ++ + A E +E
Sbjct: 188 EKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEE 225
Score = 30.2 bits (67), Expect = 5.0
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKK 1487
+K +E+ K E + E Q K TEK Q+ +E E +R + KE +++
Sbjct: 159 SDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQE 218
Query: 1488 GEIEDKEE 1495
E +E+
Sbjct: 219 AVAEYEEK 226
Score = 29.8 bits (66), Expect = 6.0
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 1415 EALGREIKRALAEK----EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
E L +EI + ++ K + EK ++ +++ + E + ++ + QE E
Sbjct: 165 ERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYE 224
Query: 1471 EEVMR-EDENKENDDRKKGEIEDKEED 1496
E++ E +E E+ +
Sbjct: 225 EKLKTLTVEVQEMVKNYMKEVFPDGPE 251
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 35.9 bits (82), Expect = 0.041
Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 1420 EIKRALAEKEKKVEEKK---KAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
++ ++++ K+ +A E++K EE+ + +E++ KE + + +E+ R
Sbjct: 35 QLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRI 94
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTA 1517
N E + EI + ++ ++ S ++EID+ M +
Sbjct: 95 LLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNS 135
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis,
CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A
{Bacillus subtilis}
Length = 468
Score = 36.4 bits (85), Expect = 0.065
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1407 NAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE 1466
+ PP + L +++ EK+ V+ ++ + S++ TE+ + + E K+ +E +
Sbjct: 389 SFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS-WKEKQ 447
Query: 1467 KEGNEEVMRED 1477
+ N EV +D
Sbjct: 448 GQENSEVTVDD 458
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 34.5 bits (79), Expect = 0.079
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
++ E R EK +K+ EE+ V +E+ + + + E Q++ + E
Sbjct: 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE---QDNLADAEERCD 72
Query: 1475 REDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
+ +NK + K E+ + ED +E ++E +A + E ++ +D
Sbjct: 73 QLIKNKIQLEAKVKEMNKRLED-EEEMNAELTAKKRKLEDECSELKRD 119
Score = 30.6 bits (69), Expect = 1.6
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 1437 KAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE------------DENKENDD 1484
+ E+E EE + KE EK E +++ +E +++E D + ++
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 1485 RKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
R I++K + E K E + E +E M A+ T
Sbjct: 70 RCDQLIKNKIQ--LEAKVKEMNKRLEDEEEMNAELTA 104
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA,
national project on P structural and functional analyses;
1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A
4dt0_A
Length = 198
Score = 35.0 bits (80), Expect = 0.094
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 1421 IKRALAEKEKKVEE-KKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
I+ E E+K+E +A ++ ++ +EE + E + E I+ + + E R N
Sbjct: 8 IQEINKEAERKIEYILNEARQQ-AEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIAN 66
Query: 1480 KENDDRKK 1487
+ R+K
Sbjct: 67 ARLEVRRK 74
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 34.4 bits (78), Expect = 0.099
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE-------- 1466
L + E + +E K+ E+ +E + + + E+E E
Sbjct: 40 NQLKEDYNTLKRELSDRDDEVKRLRED----IAKENELRTKAEEEADKLNKEVEDLTASL 95
Query: 1467 -KEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
E N V + K + + ++ + + T + + +VM + + +
Sbjct: 96 FDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDNES 152
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 34.4 bits (78), Expect = 0.13
Identities = 13/105 (12%), Positives = 38/105 (36%)
Query: 1379 VRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKA 1438
V + S GF + +L++ + V I ++++ K
Sbjct: 74 VIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKAR 133
Query: 1439 EEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
++++ +E + ++ ++ + N+ +DE ++D
Sbjct: 134 QQQAELAQQEWLQMQQAAQQAQLAAASASASNQAGSSQDEEDDDD 178
Score = 32.5 bits (73), Expect = 0.65
Identities = 10/91 (10%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 1411 PPMGEALG--REIKRALAEKEKKVEEKKKAEEESVKQTEE---EQKGKEETEKEEPIQED 1465
+ E L + + + ++E EEE ++Q +E + + ++ ++ +
Sbjct: 88 SEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQM 147
Query: 1466 EKEGNEEVMREDENKENDDRKKGEIEDKEED 1496
++ + + ++ + E+ ++D
Sbjct: 148 QQAAQQAQLAAASASASNQAGSSQDEEDDDD 178
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed
coiled-coil, ATPase/SY ATP binding, membrane, hydrolase;
2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Length = 187
Score = 34.5 bits (79), Expect = 0.14
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
EI+ L E E K E K+ EE K + ++ E + ++ E G V
Sbjct: 14 EIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQ 73
Query: 1480 KEND 1483
+
Sbjct: 74 ARGE 77
Score = 29.1 bits (65), Expect = 8.1
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 2/104 (1%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
+ L +E++ + ++ E KAE + E+ + + E+ Q E
Sbjct: 3 LEAILSQEVEAEIQALLQEAEA--KAEAVKREAEEKAKALLQARERALEAQYRAALRRAE 60
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMT 1516
E + +GE+ ++ E EV+
Sbjct: 61 SAGELLVATARTQARGEVLEEVRRRVREALEALPQKPEWPEVVR 104
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc metalloprotease,
mapkk, MEK; 2.30A {Bacillus anthracis} SCOP: d.92.1.14
d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A* 1pwq_A* 1pwv_A
1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 35.7 bits (81), Expect = 0.14
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDEN 1479
E KR E+ K EE K + + + E + + + E E + E E+ +
Sbjct: 20 ENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGG 79
Query: 1480 K----ENDDRKKGEIEDKEEDGKENKSSE 1504
K + D K +E ED K+ K
Sbjct: 80 KIYIVDGDITKHISLEALSEDKKKIKDIY 108
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 35.1 bits (80), Expect = 0.18
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKK 1487
K+ E+ K+ + + + + I + ++E + E + + RK
Sbjct: 555 GPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRK- 613
Query: 1488 GEIEDKEEDGKENKSSETSADQEIDEVMTAD 1518
E++ K S +E+D+V+ D
Sbjct: 614 ----LDEKENLSAKRSRIEQKEELDDVIALD 640
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding,
phosphorylation, acetylation, alternative splicing,
coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Length = 418
Score = 35.2 bits (80), Expect = 0.19
Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 1400 EKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEET--- 1456
E +R A G + + ++EE+++ +K+ E E + E
Sbjct: 288 ENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVK 347
Query: 1457 EKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKE---EDGKENKSSETSADQEIDE 1513
EK + +++ E E R ++ K+N + + E+E+K ED K N ++ ++ +
Sbjct: 348 EKVQKLKDSEAELQR---RHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNS 404
Query: 1514 VMTADETKD 1522
T ++ K
Sbjct: 405 SRTLEKNKK 413
Score = 34.0 bits (77), Expect = 0.37
Identities = 19/113 (16%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 1393 KFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKG 1452
+ L G G+ + + E+ + V + KK E E + E + K
Sbjct: 289 NYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKE 348
Query: 1453 KEET--EKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSS 1503
K + + E +Q ++ + + E ++KE +++++ + ED++ + + +
Sbjct: 349 KVQKLKDSEAELQRRHEQMKKNL--EAQHKELEEKRR-QFEDEKANWEAQQRI 398
Score = 30.2 bits (67), Expect = 6.8
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 1389 PDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKK---AEEESVKQ 1445
K +E+ R+ A M + + + + EK +K+++ + E +K+
Sbjct: 310 GQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKK 369
Query: 1446 TEEEQKGKEET-----EKEEPIQEDEKEGNEEVMREDENKENDDRKK 1487
E Q + E E E+ E ++ E+ ++N + K
Sbjct: 370 NLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 34.1 bits (77), Expect = 0.19
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
I++ E+ K+++E V + E +K K++ E+ Q ++ E
Sbjct: 91 QADRLTQEPESIRKWREEQRKRLQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 148
Query: 1470 NEEVMREDE 1478
N+ R +
Sbjct: 149 NKINNRIAD 157
Score = 33.4 bits (75), Expect = 0.34
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 1431 KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEI 1490
++ E ES+++ EEQ+ K E + + E+ RE K+ ++ + +
Sbjct: 90 AQADRLTQEPESIRKWREEQR-KRLQELDA-----ASKVMEQEWREKAKKDLEEWNQRQS 143
Query: 1491 EDKEEDGKENKSSETSADQEIDE 1513
E E++ N+ ++ + Q+ D
Sbjct: 144 EQVEKNKINNRIADKAFYQQPDA 166
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 34.9 bits (80), Expect = 0.20
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 1405 VGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEE-EQKGKEETEKEEPIQ 1463
G +P P+ +R + K K++E++++ E +K ++ ++K +E E+
Sbjct: 80 SGEEIPDPLSPG-----ERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFM 134
Query: 1464 EDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETK 1521
E E ++ + +I +E+ +A Q+ T ET
Sbjct: 135 NGEANAEIEDEKQFDILNKAVTSYNKILTEED---LQMRRLATALQKEIGERTHAETV 189
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 33.4 bits (76), Expect = 0.23
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 1419 REIKRALAEKEKKV---EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMR 1475
++ +A +K + EE+ + E + EEE K K Q ++ E+
Sbjct: 17 YHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKY- 75
Query: 1476 EDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADE 1519
E+E K D+ K E + E S D DE+
Sbjct: 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119
Score = 30.3 bits (68), Expect = 2.7
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 1420 EIKRALAEKEKKVE--EKKKAE-EESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMRE 1476
+K+ L E++ E E K AE EE +K K E ++ +ED+ E +V+ +
Sbjct: 25 RLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSD 84
Query: 1477 D---------ENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ + + + I+D E++ K + +E+ +
Sbjct: 85 KLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 33.7 bits (78), Expect = 0.24
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 797 RCLEVFAGAGG-----LSRGLDKSGVARSTWAIEFDSAAAAAFKMN------NPGCTVFV 845
L++++G+GG +SRG + IE + AA K N V
Sbjct: 47 MALDLYSGSGGLAIEAVSRG------MDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 100
Query: 846 DDCNKILQR 854
D N+ L++
Sbjct: 101 MDANRALEQ 109
Score = 32.9 bits (76), Expect = 0.46
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 888 RCLEVFAGAGG-----LSRGLDKSGVARSTWAIEFDSAAATAFKMN------NPGCTVFV 936
L++++G+GG +SRG + IE + AA K N V
Sbjct: 47 MALDLYSGSGGLAIEAVSRG------MDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 100
Query: 937 DDCNKILQR 945
D N+ L++
Sbjct: 101 MDANRALEQ 109
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 34.7 bits (80), Expect = 0.25
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 1429 EKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE------- 1481
K+VE++ EE K E++ + K++ + ++P E+ E E+ + + KE
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEE 269
Query: 1482 -NDD-----RKKGEIEDKE 1494
N R +I +E
Sbjct: 270 LNKTKPLWTRNPSDITQEE 288
Score = 34.0 bits (78), Expect = 0.48
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 1455 ETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKS-SETSADQEIDE 1513
E EKE PI E+EK+ E+ E +++++ K E++++EE + K E + E
Sbjct: 212 EVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELN 271
Query: 1514 VMTA 1517
Sbjct: 272 KTKP 275
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 34.5 bits (79), Expect = 0.27
Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVK----QTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ K LA ++++ + E++ + EE+ + D + E+
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKS 323
Query: 1475 REDENKENDD 1484
++ +
Sbjct: 324 NTAGSQSQVE 333
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2
PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 33.9 bits (78), Expect = 0.37
Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 1412 PMGEALGREIKRALAEKEKKVEE------KKKAEEESVKQTEE--EQKGKEETEKEEPIQ 1463
+ R +K + EK + + E++ V + E +G+ E ++ + ++
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344
Query: 1464 EDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETS 1506
E E E+ E E++ + E+KE+ ++ S+
Sbjct: 345 ELTDEEEEDEEEEAESQSPEPET--SEEEKEDKELADELSKAH 385
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 33.8 bits (76), Expect = 0.48
Identities = 12/60 (20%), Positives = 18/60 (30%)
Query: 1447 EEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETS 1506
E + DEN D + + E++EE K N+ TS
Sbjct: 300 SIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKSNEDPLTS 359
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I*
1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I*
1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G
1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 33.7 bits (76), Expect = 0.53
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 1405 VGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPI-Q 1463
V A A + + AL E+ + VE EE + Q ++ + +
Sbjct: 271 VSKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEA 330
Query: 1464 EDEKEGNEEVM 1474
+D+ + +E+
Sbjct: 331 DDDDDDDEDAG 341
Score = 31.7 bits (71), Expect = 2.1
Identities = 9/72 (12%), Positives = 24/72 (33%)
Query: 1398 ILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETE 1457
++ K A+ + + + E + EE +++ ++ E
Sbjct: 270 LVSKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEE 329
Query: 1458 KEEPIQEDEKEG 1469
++ +DE G
Sbjct: 330 ADDDDDDDEDAG 341
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 33.6 bits (76), Expect = 0.56
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 1411 PPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
P M E + +A + KA + +++KG E EK++ +E EKE
Sbjct: 796 PRMYEEASGKEVEKVATAVLSTTARAKARA----KKTKKEKGPNEEEKKKEHEEKEKERE 851
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKS 1502
E KEND+ + +N +
Sbjct: 852 TNKKGIKETKENDEEFYKNKYSSKPYKVDNMT 883
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras II,
POL II, head module, head, regulator, helical bundle;
4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 33.4 bits (75), Expect = 0.68
Identities = 10/78 (12%), Positives = 29/78 (37%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ L EIK+ ++ +KK + + + + + E +++ D + +
Sbjct: 25 KELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNETDHKT 84
Query: 1475 REDENKENDDRKKGEIED 1492
E+ +++ E
Sbjct: 85 NENGETDDNIETVMTQEQ 102
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 32.7 bits (74), Expect = 0.72
Identities = 11/105 (10%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
R+ K + + KK+ + + K +E + ++ + +++ +EDE
Sbjct: 17 RKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQD--KEDE 74
Query: 1479 NKENDDRKKGEIEDKEEDGKENKSSE----TSADQEIDEVMTADE 1519
R++ + ++ + + +Q ++ + +
Sbjct: 75 GCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQK 119
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 31.8 bits (71), Expect = 0.72
Identities = 12/106 (11%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE---------KEG 1469
++K ++++ ++ + + +E + + + E+E E E
Sbjct: 28 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 87
Query: 1470 NEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVM 1515
N V K + + ++ + + T + + +VM
Sbjct: 88 NNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 32.6 bits (75), Expect = 0.77
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 941 KILQ----RVIDNEVCDDKKQKLPRKGEV--EMLCGGPP------CQGFSG 979
L+ V + + C++ + R M C G P CQG SG
Sbjct: 142 HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 192
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4,
de novo DNA methylation, transferase regulator; HET: DNA;
3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 33.0 bits (74), Expect = 0.81
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 935 FVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNS 994
F++ + Q +V D ++ + G +++ G P G + + F+
Sbjct: 208 FLESGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRP---PSWYLFQFH 264
Query: 995 LIVSYLS-YCDYYRPRFFLLENVRNF 1019
++ Y P F++ +
Sbjct: 265 RLLQYARPKPGSPGPFFWMFVDNLVL 290
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein
folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 33.1 bits (76), Expect = 0.82
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 1404 QVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPI- 1462
+ + K L K EE E + + K +E I
Sbjct: 562 TLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIR 621
Query: 1463 ----QEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEID 1512
++E++ +++ ++ +K + K E K+ + +T D ++D
Sbjct: 622 GRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGDVDMD 675
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis,
CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A
{Bacillus subtilis}
Length = 758
Score = 32.9 bits (76), Expect = 0.87
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1407 NAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE 1466
+ PP + L +++ EK+ V+ ++ + S++ TE+ + + E K+ +E +
Sbjct: 389 SFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS-WKEKQ 447
Query: 1467 KEGNEEVMRED 1477
+ N EV +D
Sbjct: 448 GQENSEVTVDD 458
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 32.8 bits (75), Expect = 0.91
Identities = 14/79 (17%), Positives = 31/79 (39%)
Query: 1444 KQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSS 1503
Q E+ + + E + E+P+ E+ + E V ++ E + E E + + +
Sbjct: 16 GQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVT 75
Query: 1504 ETSADQEIDEVMTADETKD 1522
E A+ E + +
Sbjct: 76 EQVAESEKAQPEAEVVAQP 94
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 32.8 bits (74), Expect = 0.97
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 1053 DPTPCYCIGCCTRGSSAFKNSLIVSYL 1079
T G G++A K SL +YL
Sbjct: 207 QVTKSGLGGEVIYGNNAGKKSLDKTYL 233
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 32.2 bits (74), Expect = 1.0
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 942 ILQRV----IDNEVCDDKKQKLPRKGEV--EMLCGGPP------CQGFSG 979
L + + + C + +K+ + M C G C+G SG
Sbjct: 144 ELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSG 193
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.9 bits (76), Expect = 1.1
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ-EDEKEGNEEV 1473
+AL R+ + E+E +EK +E +K E E E + + E E+E ++
Sbjct: 404 DALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKL 463
Query: 1474 MREDENKENDDRKKGEIEDKEEDGKENKSSE 1504
E + D + EIE E N+++E
Sbjct: 464 ---REAQHRLDEVRREIELAERQYDLNRAAE 491
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 31.3 bits (72), Expect = 1.2
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 797 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAAAAFKMN 837
R L+ FAG+G + S G + +E D A K N
Sbjct: 44 RFLDPFAGSGAVGLEAASEG------WEAV-LVEKDPEAVRLLKEN 82
Score = 30.2 bits (69), Expect = 3.0
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 888 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAATAFKMN 928
R L+ FAG+G + S G + +E D A K N
Sbjct: 44 RFLDPFAGSGAVGLEAASEG------WEAV-LVEKDPEAVRLLKEN 82
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 32.2 bits (73), Expect = 1.3
Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 16/133 (12%)
Query: 756 LPTEALFLGSVSKGKGK-GKNQTNKPEEKDEITEWPSIARPLRC------LEVFAGAGGL 808
+P + +SK K G P ++I + + + + L+++ G G
Sbjct: 17 IPG----IKDISKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQ 72
Query: 809 SRGLDKSGVARSTWAIEFDSAAAAAFKM--NNPGCTVFVDDCNKILQRVIDNEVWGKGKN 866
S R +E S+ + D + + + +
Sbjct: 73 SAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRD---PYDWSTYSNLIDEERI 129
Query: 867 QTNKPEEKDEITE 879
+ + D I +
Sbjct: 130 FVPEVQSSDHIND 142
Score = 31.4 bits (71), Expect = 2.1
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 890 LEVFAGAGGLSRGLDKSGVARSTWAIEFD 918
L+++ G G S R +E
Sbjct: 63 LDLYPGVGIQSAIFYNKYCPRQYSLLEKR 91
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 30.9 bits (69), Expect = 1.3
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 1397 TILEKHRQVGNAVPPPMGEALGREIKRAL--AEKEKKVEEKKKAEEESVKQTEEEQKGKE 1454
+++K IK+A+ AE+ + + + E E K+ EE+ + +E
Sbjct: 73 NLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEE 132
Query: 1455 ETEKEEPIQED 1465
++ QE
Sbjct: 133 AQRLQQKRQET 143
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 32.0 bits (73), Expect = 1.3
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 941 KILQ----RVIDNEVCDDKKQKLPRKGEV--EMLCGGPP------CQGFSG 979
L+ V + + C++ + R M C G P CQG SG
Sbjct: 231 HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 281
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A
2bpr_A 1dg4_A
Length = 219
Score = 31.4 bits (72), Expect = 1.5
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 17/87 (19%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEES---------VKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
EI++ + + E E +K EE + T K+ E + + D+K
Sbjct: 123 EIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTR-----KQVEEAGDKLPADDKTAI 177
Query: 1471 EEVMRE-DENKENDDRKKGEIEDKEED 1496
E + + + +D K IE K ++
Sbjct: 178 ESALTALETALKGED--KAAIEAKMQE 202
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 32.4 bits (74), Expect = 1.5
Identities = 10/66 (15%), Positives = 22/66 (33%)
Query: 1434 EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDK 1493
+ E E +EE + E Q ++ G + V+ ++ K E
Sbjct: 4 DDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVP 63
Query: 1494 EEDGKE 1499
+ + +
Sbjct: 64 DLNNCK 69
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 31.8 bits (72), Expect = 1.5
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE----KE 1468
+ + RE+K E K E + + K ++ + E E+ E++ KE
Sbjct: 170 IYWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKE 229
Query: 1469 GNEEVMREDEN 1479
G E +++N
Sbjct: 230 GEAEQNTDNKN 240
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 31.6 bits (71), Expect = 1.8
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKE 1459
I+R+ +E+ K ++S+ + E Q+ +
Sbjct: 220 SLIQRSKCGPVGS-DERVKEFKQSLIKYMETQRSYTALAEA 259
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 31.4 bits (72), Expect = 1.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
K + VEE + EE + ++ E+ E+EE + K+
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 31.4 bits (72), Expect = 2.0
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 1453 KEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKE 1494
+ EEP++E+E E+ ED + E ++ E + +
Sbjct: 216 SKTETVEEPMEEEEAAKEEK---EDSDDEAAVEEEEEEKKPK 254
Score = 30.3 bits (69), Expect = 4.7
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 1428 KEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK 1467
K ++ EEE + E+E E +EE ++ K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
Score = 30.3 bits (69), Expect = 4.8
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNE 1471
K E ++ EE EE++ +E EE +E + + +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 29.9 bits (68), Expect = 5.6
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1456 TEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
+ K E ++E +E ++E +++DD E E++E+ K K +T D E+
Sbjct: 215 SSKTETVEEPMEEEEAA---KEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 30.6 bits (68), Expect = 2.0
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
+ A + ++ EEK EE ++ +E + ++E E ++ ++++E EEV
Sbjct: 21 VAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEV 73
Score = 30.6 bits (68), Expect = 2.1
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
E+ K V E++ + E + E +++E+ G+E+ +++ E+DD E E+
Sbjct: 11 EQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDED--EDEDEDEDDDDDDDEDEE 68
Query: 1493 KEED 1496
+EE+
Sbjct: 69 EEEE 72
Score = 30.2 bits (67), Expect = 2.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 1434 EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDD 1484
E E+ K E E+K +E +++E EDE + +++ E+E +E D
Sbjct: 25 EDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD 75
Score = 29.5 bits (65), Expect = 4.8
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
M E +G ++ V + + E ++ E + KEE +E EDE E
Sbjct: 2 MLELVGEYWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDED--- 58
Query: 1473 VMREDENKENDDRKKGEIEDKEEDGKE 1499
+D++ + D+ ++ E+ D+ ED +E
Sbjct: 59 ---DDDDDDEDEEEEEEVTDQLEDLRE 82
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 31.9 bits (73), Expect = 2.1
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 1405 VGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEP 1461
+G +P G R + K +EE +K E+ +E++ + +E+P
Sbjct: 1209 LGRLIPAGTGSDFVRFTQVVDQRTLKAIEEARKEAVEA----KEKEAPRRPVRREQP 1261
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO
ATPase, F1FO ATP synthase, structural protein; NMR
{Methanocaldococcus jannaschii}
Length = 56
Score = 28.6 bits (63), Expect = 2.1
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 1430 KKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEK 1467
+ ++E K AEE++VK+ EE K + E K E I+E +K
Sbjct: 16 EAIKEVKLAEEQAVKEI-EEAKNRAEQIKAEAIEEAKK 52
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 31.7 bits (72), Expect = 2.1
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 941 KILQ----RVIDNEVCDDKKQKLPRKGEV--EMLCGGPP------CQGFSG 979
L+ V + + C++ + R M C G P CQG SG
Sbjct: 299 HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 349
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 2.70A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 97
Score = 29.8 bits (66), Expect = 2.2
Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE---------KEG 1469
++K ++++ ++ + + +E + + + E+E E E
Sbjct: 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 67
Query: 1470 NEEVMREDENKENDDRK----KGEIEDKE 1494
N V + K + ++ +K+
Sbjct: 68 NNMVADARKEKYAIEILNKRLTEQLREKD 96
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 31.9 bits (73), Expect = 2.2
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 305 CGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIE 357
V C + CG CT LD GK +ACI K + AE++ +
Sbjct: 34 TSVKVGCGKGQCGACTVILD-------GKVVRACII-----KMSRVAENASVT 74
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS,
serrs, translation, ATP-binding, nucleotide-binding,
structural genomics; HET: ATP; 1.95A {Trypanosoma brucei}
PDB: 3lsq_A*
Length = 484
Score = 31.5 bits (72), Expect = 2.2
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 16/101 (15%)
Query: 1399 LEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEET-- 1456
+ + GE + + L + K + ++ + +Q EEE+
Sbjct: 83 IPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVG 142
Query: 1457 ---EKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKE 1494
+ PI +DE+ GN V R G +
Sbjct: 143 NILHESVPIAQDEETGNTVV-----------RTFGNTTKRA 172
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 31.8 bits (72), Expect = 2.4
Identities = 11/75 (14%), Positives = 30/75 (40%)
Query: 1434 EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDK 1493
KK+ E +K+ +Q E + ++ ++ +V + +N K+
Sbjct: 623 NKKEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICN 682
Query: 1494 EEDGKENKSSETSAD 1508
+D +++++ D
Sbjct: 683 VDDNCRSQNNKKKKD 697
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 31.4 bits (72), Expect = 2.4
Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 1397 TILEKHRQVGNAVPPPMGEALGREIKRALAEK-----EKKVEEKKKAEEESVKQTEEEQK 1451
+ +V E + R ++ E+ + +V + +E++V+ ++
Sbjct: 201 KVFG----RSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTIE-KEDAVEVIYFDKS 255
Query: 1452 GKEETEK 1458
G++ TE
Sbjct: 256 GQKTTES 262
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.3 bits (70), Expect = 2.5
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 1427 EKEKKVEEKKKAEEESVKQTEEEQKGKEET---EKEEPIQEDEKEGNEEVMREDENKEND 1483
++ E K+ +++ EEE + EKE ++E EKE +E + D K+
Sbjct: 319 SLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHE---KFDRLKKLH 375
Query: 1484 DRKKGEIEDK 1493
+K ++EDK
Sbjct: 376 QDEKKKLEDK 385
Score = 31.3 bits (70), Expect = 2.9
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 1426 AEKEKKVEEKKKAEEE--SVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
A++ + + E +K EEE + ++K E E E+ + E + +DE K+ +
Sbjct: 326 AKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLH--QDEKKKLE 383
Query: 1484 DRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD 1522
D+KK ++ + ++E Q + +D
Sbjct: 384 DKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRD 422
Score = 30.5 bits (68), Expect = 4.2
Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 1399 LEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKG--KEET 1456
+ + + +E+ +K +++KK E+ K ++E + +T
Sbjct: 342 MRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKT 401
Query: 1457 EKEEPIQEDEKEGNEEVMREDENKEN 1482
E + + G + ++ D+ K+N
Sbjct: 402 AAELLQSQGSQAGGSQTLKRDKEKKN 427
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.4 bits (71), Expect = 2.8
Identities = 11/109 (10%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 1407 NAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKG----KEETEKEEPI 1462
N V P ++ + EK ++EE++ +K+ + + + ++
Sbjct: 1890 NYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRE 1949
Query: 1463 QEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
+ + E + +++ + K + + + + ++ E + +
Sbjct: 1950 LDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVK 1998
>1w9r_A CBPA-R2, choline binding protein A; receptor, polymeric
immunoglobulin receptor, PIGR, adhesion, invasion,
pathogenesis; NMR {Streptococcus pneumoniae}
Length = 119
Score = 29.6 bits (65), Expect = 2.9
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKE--ETEKEEPIQEDEKEGNEEVMRE 1476
+ + K +E + + VK+ E E +E E EE +++ + E +
Sbjct: 29 EDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEA 88
Query: 1477 DE-NKENDDRKKGEIEDKEEDGKENKSSE 1504
K DRKK E E K + +E+K E
Sbjct: 89 TRLEKIKTDRKKAEEEAKRKAAEEDKVKE 117
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 3iyv_J
Length = 70
Score = 28.5 bits (63), Expect = 3.0
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 1434 EKKKAEEESVKQTEEEQKGK-EETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIED 1492
++ ++E ES+++ EEQ + E + QE E +E KE D+ + E
Sbjct: 2 DRLQSEPESIRKWREEQTERLEALDANSRKQEAE-------WKEKAIKELDEWYARQDEQ 54
Query: 1493 KEEDGKENKSSE 1504
++ N+ ++
Sbjct: 55 LQKTKANNRVAD 66
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein
binding; 2.18A {Schizosaccharomyces pombe}
Length = 393
Score = 31.2 bits (69), Expect = 3.3
Identities = 9/62 (14%), Positives = 23/62 (37%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
+R + +K++ E+ ++ E G KE + + E+ +E
Sbjct: 4 RRPQGLRAAASLKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEE 63
Query: 1482 ND 1483
++
Sbjct: 64 DN 65
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 30.5 bits (68), Expect = 3.3
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
+ + A+ ++ E + +E+ Q + K E + KE + +
Sbjct: 52 VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111
Query: 1475 REDENKEND-DRKKGEIEDKEED--GKENKSSETSA--DQEIDE 1513
RE E +D +R K ED + N++ E +A + E+DE
Sbjct: 112 RELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155
Score = 28.9 bits (64), Expect = 9.5
Identities = 14/65 (21%), Positives = 22/65 (33%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKE 1481
KRA + E++ E E E KE +DE + + E ++
Sbjct: 125 KRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQQ 184
Query: 1482 NDDRK 1486
RK
Sbjct: 185 EVTRK 189
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 31.2 bits (70), Expect = 3.5
Identities = 13/93 (13%), Positives = 19/93 (20%), Gaps = 12/93 (12%)
Query: 1056 PCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLT 1115
G++ K SL +YL V +R
Sbjct: 205 KSALATEVIYGNNHGKQSLDKTYL----------AAALGTGKVTIQTLHQVKT--IRQTK 252
Query: 1116 QIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPG 1148
GY T ++ L G
Sbjct: 253 DGGYALTVEQKDTDGKLLATKEISCRYLFLGAG 285
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 31.3 bits (71), Expect = 3.6
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 1405 VGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
+G +P G R + + K +EE +K E+ ++ + K E ++
Sbjct: 1468 LGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEAKERPAARRGVKREQPGKQ 1523
Score = 30.9 bits (70), Expect = 4.1
Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 1399 LEKHRQVGNAVPPPMG-EALGREIKRALAEKE-----KKVEEKKKAEEESVKQTEEEQKG 1452
E P P G +AL ++ + + +E + + E K
Sbjct: 159 RELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKK 218
Query: 1453 KEETEKEEPIQEDEKEGN--EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQE 1510
+ + EKE E++ E ++ + + +E + D+
Sbjct: 219 ERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEP 278
Query: 1511 IDEVMTA 1517
+
Sbjct: 279 VATYFLP 285
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil,
coiled coil, cytoplasm, disease mutation, ectodermal
dysplasia; 3.20A {Homo sapiens}
Length = 130
Score = 29.5 bits (65), Expect = 3.6
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 1413 MGEALGREIKRALAEKEKK-VEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDE----K 1467
+GE + + A KE + +E + +A E +Q E E +E +++ +Q D+
Sbjct: 8 LGELQESQSRLEAATKECQALEGRARAASEQARQLESE---REALQQQHSVQVDQLRMQG 64
Query: 1468 EGNEEVMREDENKENDDRKK 1487
+ E +R + +++++K
Sbjct: 65 QSVEAALRMERQAASEEKRK 84
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 30.6 bits (68), Expect = 4.2
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGK-----EETEKEEPIQEDEKEGNEEVMRE 1476
+R E K+ K + +T + K E E I + E E
Sbjct: 324 RRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQKYEAPAYDSTE 383
Query: 1477 DENKENDDRKKGEIEDKEE 1495
E E D ++ + + +EE
Sbjct: 384 KEGAEQVDGEQRDGQLQEE 402
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine,
axial stagger, radius, SIDE-chain packing, crystal
packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 29.7 bits (66), Expect = 4.3
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 1440 EESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKE 1499
EE + + +E ++ E + +E M+ E++ D +K +E +E KE
Sbjct: 9 EEELDRAQER---LATALQKLEEAEKAADESERGMKVIESRAQKDEEK--MEIQEIQLKE 63
Query: 1500 NKSSETSADQEIDEV 1514
K AD++ +EV
Sbjct: 64 AKHIAEDADRKYEEV 78
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 30.4 bits (68), Expect = 4.3
Identities = 14/107 (13%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQK--GKEETEKEEPIQEDEKEGNEEVMRE 1476
+ ++ E E + +++E ++Q Q K+ E+ ++ +E
Sbjct: 27 NDWRKFKLESEDS-DSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELIHKDKE 85
Query: 1477 DENKENDDRKKGEIEDKEEDGKENKSSE----TSADQEIDEVMTADE 1519
DEN R++ + ++ + S +Q ++ + +
Sbjct: 86 DENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQK 132
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 30.5 bits (68), Expect = 4.5
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 1/86 (1%)
Query: 1434 EKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDK 1493
+ V + EE +++E +E + + D GE
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKEQE-EEEAALVAPDYGAVAEYAAPAADTWGGEWGTD 250
Query: 1494 EEDGKENKSSETSADQEIDEVMTADE 1519
++ AD A
Sbjct: 251 AAAQPAAIPAQAGADWTAAPAPAAGG 276
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 28.3 bits (63), Expect = 5.7
Identities = 14/86 (16%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEE----TEKEEPIQEDEKEGN 1470
EA+ ++++ +KE ++ ++AE + + + ++ +EE +K + +++ ++ +
Sbjct: 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64
Query: 1471 EEVMREDENKENDDRKKGEIEDKEED 1496
E V ++ ++ + +K + D E +
Sbjct: 65 ESV--KEAQEKLEQAEK-KATDAEAE 87
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis,
CELL_cycle regulation, alternative splicing, cell cycle,
cell division; HET: MSE; 2.50A {Homo sapiens}
Length = 78
Score = 28.0 bits (62), Expect = 5.9
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 1416 ALGREIKRALAEKEKKVEEKKKAEEESVKQTEEE-QKGKEETEKEEPIQEDEKEGNEEVM 1474
A+ +++ + E+ ++ +AE ++K+TEE+ +KG ++ EE + ++E E
Sbjct: 7 AVSDKLRWRMKEEM----DRAQAELNALKRTEEDLKKGHQKL--EEMVTRLDQEVAE--- 57
Query: 1475 REDENKENDDRKKGEIED 1492
D+N E +K E+
Sbjct: 58 -VDKNIELLKKKDEELSS 74
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 30.3 bits (69), Expect = 6.1
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 17/87 (19%)
Query: 1420 EIKRALAEKEKKVEEKKKAEEE---------SVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
EI++ + + E E +K +E + T K+ E + + D+K
Sbjct: 511 EIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTR-----KQVEEAGDKLPADDKTAI 565
Query: 1471 EEVMRE-DENKENDDRKKGEIEDKEED 1496
E + + + +D K IE K ++
Sbjct: 566 ESALTALETALKGED--KAAIEAKMQE 590
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 30.3 bits (69), Expect = 6.1
Identities = 12/64 (18%), Positives = 26/64 (40%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEE 1472
MG+A E+ + + K ++ + ++K K E K+E D + E
Sbjct: 1 MGKAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLSVAE 60
Query: 1473 VMRE 1476
+ ++
Sbjct: 61 LEQK 64
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 30.3 bits (68), Expect = 6.4
Identities = 12/85 (14%), Positives = 29/85 (34%)
Query: 1414 GEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEV 1473
+ E + K+KK + A E+ + + + E ED++ ++
Sbjct: 27 AASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDE 86
Query: 1474 MREDENKENDDRKKGEIEDKEEDGK 1498
+ + +KK + + K
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKV 111
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 29.9 bits (67), Expect = 6.5
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKE--ETEKEEPIQEDEKEGNEE 1472
G + R + EE +Q EE +E E E +E + E++ E E
Sbjct: 183 RLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEW 242
Score = 29.1 bits (65), Expect = 9.2
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE--DEKEGNEE 1472
++ + E++ AEE + ++ EE+ +E TE++ E +E N E
Sbjct: 203 FYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADNVE 251
>1m4z_A Origin recognition complex subunit 1; DNA replication,
transcriptional silencing, chromatin, BAH D gene
regulation; 2.20A {Saccharomyces cerevisiae} SCOP:
b.34.12.1 PDB: 1zhi_A 1zbx_A
Length = 238
Score = 29.8 bits (66), Expect = 6.9
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 681 PENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRF 740
+ + F+ + N+LY + E ++ L + V+ ++ + F
Sbjct: 117 RPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG--NVDPERDF 174
Query: 741 YFNEAYNSKTEEFTNL 756
E+F ++
Sbjct: 175 TVRYICEPTGEKFVDI 190
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 29.9 bits (66), Expect = 7.0
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKE 1468
+E + EKK E + + + + K E + E+ +Q+ + E
Sbjct: 338 SEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGE 380
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4;
1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Length = 464
Score = 30.1 bits (69), Expect = 7.0
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 68 SVYDQNGHLCPFDTGLVEKNV-ILNFSGYLKCITSEDPTPEGGIPVKEV 115
S+Y++ L EK I SG K + GI +V
Sbjct: 19 SLYEKEK-YLDILRELHEKGWEIWASSGTAKFLK------SNGIEANDV 60
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 30.0 bits (68), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 305 CGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACI 339
GV C+Q CG C+ LD GK +AC+
Sbjct: 34 TGVKVGCEQGQCGACSVILD-------GKVVRACV 61
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 28.9 bits (64), Expect = 7.4
Identities = 21/109 (19%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 1407 NAVPPPMGEALGREIKRAL--AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQE 1464
NA P + EI++ L AE+ +K +E + + + K+ E + ++ E+ +
Sbjct: 34 NASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIK 93
Query: 1465 DEKEGNEEVMRED-ENKE-NDDRKKGEIEDKEEDGKENKSSETSADQEI 1511
KE + M + EN+E + +++K++ +E + ++ ++
Sbjct: 94 MAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEAS 142
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator, ATP-binding,
DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 30.1 bits (67), Expect = 7.4
Identities = 18/124 (14%), Positives = 45/124 (36%), Gaps = 14/124 (11%)
Query: 1366 GRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
R L P R++ + + F+ + V + A+ +++ L
Sbjct: 833 NRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQL----NAVNRHTGSKLVNAVQQDVHAIL 888
Query: 1426 AEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQ--EDEKEGNEEVMREDENKEND 1483
E ++E+ +A ++ + +E+ E + E + N + R+DE +
Sbjct: 889 QLGEAQIEKSARALIDAARNEADEKLSAE-------LSRLEALRAVNPNI-RDDELTAIE 940
Query: 1484 DRKK 1487
++
Sbjct: 941 SNRQ 944
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 29.5 bits (66), Expect = 8.7
Identities = 12/100 (12%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 1390 DHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEE 1449
HH ++ + + P +++ ++ E + EE VK +
Sbjct: 6 HHHHHSSGLVPRGSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLK 65
Query: 1450 QKGKEETEKEEPIQEDEKEGNEEVMREDENK----ENDDR 1485
+K ++ E + + + ++ ++ + E+ +R
Sbjct: 66 EKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKER 105
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 29.2 bits (66), Expect = 8.8
Identities = 7/51 (13%), Positives = 18/51 (35%)
Query: 1433 EEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKEND 1483
+ ++A + + K+ + E+ +DE ++E D
Sbjct: 234 DLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGD 284
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 29.8 bits (68), Expect = 8.8
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 1415 EALGREIKRALAEKEK-----KVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
+ +G +I A ++K V KK ++ ++E G + + +E E
Sbjct: 261 DLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALGLSDENPTGYDPLKLGAIFKELEA-- 318
Query: 1470 NEEVMRE---DENKENDDRKKGEI 1490
+V+R D D R +
Sbjct: 319 --DVVRRGILDTGLRIDGRDVKTV 340
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 27.9 bits (62), Expect = 9.0
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 1422 KRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENK- 1480
K ++ ++ E KKA EE KQ E++ + EK+ + ED ++ E + + E+
Sbjct: 18 KENALDRAEQAEADKKAAEERSKQLEDDIV---QLEKQLRVTEDSRDQVLEELHKSEDSL 74
Query: 1481 ENDDRKKGEIE 1491
+ + E
Sbjct: 75 LFAEENAAKAE 85
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 28.8 bits (64), Expect = 9.7
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1421 IKRALAEKEKKVEEKKKAEEESVKQTEEEQKGK 1453
++ E KV +K+A +++ K+ + +KGK
Sbjct: 148 VEIFAQEVAAKV--RKEAPKDAAKKVPKTKKGK 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,484,715
Number of extensions: 1456018
Number of successful extensions: 4126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3843
Number of HSP's successfully gapped: 283
Length of query: 1522
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1416
Effective length of database: 3,742,167
Effective search space: 5298908472
Effective search space used: 5298908472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.2 bits)