RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16462
(1522 letters)
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 96.6 bits (239), Expect = 5e-22
Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 5/166 (3%)
Query: 1268 PNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCSCATSAK---TPCDPLARQFGTL 1324
P R+ + L + ++ + + + L +
Sbjct: 160 PQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEI 219
Query: 1325 IPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPM--GKQGRVLHPEQHRVVSVREC 1382
G R+ + T++ K G L + R + REC
Sbjct: 220 EQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPREC 279
Query: 1383 ARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEK 1428
AR G+PD +K H + + ++Q GN+V + + + I +L K
Sbjct: 280 ARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFK 325
Score = 72.7 bits (177), Expect = 5e-14
Identities = 46/255 (18%), Positives = 91/255 (35%), Gaps = 24/255 (9%)
Query: 885 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 944
LR +++FAG GG L+ G ++ E+D A ++MN
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFG-------------- 54
Query: 945 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 1004
+ D + + ++LC G PCQ FS + + + + +L
Sbjct: 55 ---EKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQ--KGFEDSRGTLFFDIARIVR 109
Query: 1005 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCT 1064
+P+ +ENV+NF + N L++ + ++ Y L A +
Sbjct: 110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMI 169
Query: 1065 RGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFG 1124
F+N L + + + F+ + + ++ ++ + + Q Q T
Sbjct: 170 ----CFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPK 225
Query: 1125 TLQAGHFGVSQTRRR 1139
T++ G G R
Sbjct: 226 TVRLGIVGKGGQGER 240
Score = 49.6 bits (117), Expect = 2e-06
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 794 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNP 839
LR +++FAG GG L+ G ++ E+D A ++MN
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFG 54
Score = 42.3 bits (98), Expect = 3e-04
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 1056 PCYCIGCC---TRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMR 1112
+G + +L +P+ +ENV+NF + N L++
Sbjct: 79 FPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKN 138
Query: 1113 CLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSP 1163
+ ++ Y L A +G+ Q R R ++ + + P
Sbjct: 139 TMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELN 189
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius
[TaxId: 197575]}
Length = 324
Score = 88.1 bits (217), Expect = 4e-19
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 1333 GNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHH 1392
N GR + + + +R ++VRECAR QGFPD
Sbjct: 231 WNEPAFTVQASGRQCQLHPQAPVMLKVSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDF 290
Query: 1393 KFH-GTILEKHRQVGNAVPPPMGEALGREIKRAL 1425
FH ++ + ++ +GNAVP + + + IK AL
Sbjct: 291 IFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSAL 324
Score = 66.6 bits (161), Expect = 6e-12
Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 19/177 (10%)
Query: 887 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 946
+ + +F+GAGGL G K+G R A E+D + ++ N+ + D +KI
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHS-AKLIKGDISKISSDE 58
Query: 947 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 1006
+ + + GGPPCQ +S + L Y+
Sbjct: 59 FP---------------KCDGIIGGPPCQSWSEGGSLRGIDD--PRGKLFYEYIRILKQK 101
Query: 1007 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCC 1063
+P FFL ENV+ +A +++ ++ ++ GY L A +
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFY 158
Score = 53.1 bits (126), Expect = 1e-07
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 796 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRV 855
+ + +F+GAGGL G K+G R A E+D + ++ N+ + D +KI
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHS-AKLIKGDISKISSDE 58
Query: 856 IDN 858
Sbjct: 59 FPK 61
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/193 (15%), Positives = 63/193 (32%)
Query: 1058 YCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQI 1117
+ G RG + L Y+ +P FFL ENV+ +A +++ ++ ++
Sbjct: 74 WSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNA 133
Query: 1118 GYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTY 1177
GY L A +GV+Q R+R + + P + P + +
Sbjct: 134 GYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKPTFKDVIWDLKDNPI 193
Query: 1178 VSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTII 1237
+ K + + + + E A + + + +
Sbjct: 194 PALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPV 253
Query: 1238 SDHICKDMAPLVQ 1250
+ K++ V+
Sbjct: 254 MLKVSKNLNKFVE 266
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 85.1 bits (209), Expect = 6e-18
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 1325 IPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECAR 1384
+ +Q + + + +Q L + R + +E A
Sbjct: 245 FTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQ--EEQITKLLILKLRYFTPKEIAN 302
Query: 1385 SQGFPDHHKFHGTILEKH--RQVGNAVPPPMGEALGREIK 1422
GFP F I K R +GN++ + L + +
Sbjct: 303 LLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 342
Score = 76.3 bits (186), Expect = 5e-15
Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 15/178 (8%)
Query: 886 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 944
PLR LE+++G GG+ L +S + A+ AI+ ++ A +K N P + I
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61
Query: 945 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 1004
D + +M+ PPCQ F+ + R S + L + +
Sbjct: 62 EEFD-------------RLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRL 108
Query: 1005 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTP-CYCIG 1061
P++ LLENV+ F +L T+ + G + + I
Sbjct: 109 QKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIA 166
Score = 61.2 bits (147), Expect = 3e-10
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 795 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQ 853
PLR LE+++G GG+ L +S + A+ AI+ ++ A +K N P + I
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61
Query: 854 RVIDN 858
D
Sbjct: 62 EEFDR 66
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 217
Score = 53.8 bits (129), Expect = 2e-08
Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 36/173 (20%)
Query: 402 YYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVC-YMYEDMKNF--------------- 445
+Y G ++ GD V++ ++ V + + N
Sbjct: 42 HYLKRSSDGIKLGRGDSVVMHNEAAG-TYSVYMIQELRLNTLNNVVELWALTYLRWFEVN 100
Query: 446 -----KTRKCHILWFARGQETVLE---ELSDPQELFLLEACDDVSLNAVANLCQVKHFPI 497
+ R + E ++ EL+L ++ L + V
Sbjct: 101 PLAHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDG-- 158
Query: 498 SENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKY 550
W + + ER F R +P +F D+ E + I K
Sbjct: 159 -SKWE--------VLKGNVDPERDFTVRYICEPTGEKFVDINIEDVKAYIKKV 202
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 36.0 bits (83), Expect = 0.009
Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 1411 PPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGN 1470
P E + ++++ A ++ + E K E + E + E + KE
Sbjct: 41 DPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF--IKMAKEKL 98
Query: 1471 EEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
+ + + NKEN + + ++ ++ K+ + E ++E+ E
Sbjct: 99 AQ--KMESNKENREAHLAAMLERLQE-KDKHAEEVRKNKELKE 138
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 300
Score = 35.5 bits (81), Expect = 0.039
Identities = 9/77 (11%), Positives = 28/77 (36%)
Query: 1419 REIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDE 1478
A E + + ++ E++ E ++ E+ E + E+E + +++
Sbjct: 215 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 274
Query: 1479 NKENDDRKKGEIEDKEE 1495
+ + + E +
Sbjct: 275 EQLLKEGFQKESRIMKN 291
Score = 35.5 bits (81), Expect = 0.047
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEK---------EEPIQED 1465
+A+ + + ++++ E+ KAE + ++ + E Q
Sbjct: 190 DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT 249
Query: 1466 EKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDE 1513
EK N+ V E + K E E ++G + +S EI +
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI--MKNEIQD 295
Score = 33.2 bits (75), Expect = 0.21
Identities = 8/48 (16%), Positives = 26/48 (54%)
Query: 1413 MGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEE 1460
+ E + + + L E+E+ + K + +E+ +K+ +++ + E ++
Sbjct: 248 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
Score = 30.9 bits (69), Expect = 1.2
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 1415 EALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVM 1474
E L + ++ ++ + ++E+++ K E+EQ KE +KE I ++E + + M
Sbjct: 243 EHLKQLTEKMENDRVQLLKEQERTLAL--KLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 32.1 bits (72), Expect = 0.45
Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 15/182 (8%)
Query: 884 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKIL 943
RPL+ L +F G S +G ++ A K N +
Sbjct: 131 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPI---- 184
Query: 944 QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYC 1003
R I + +++ R +++ PP F Q ++
Sbjct: 185 -RWICEDAMKFIQREERRGSTYDIILTDPPK--FGRGTHGEVWQLFDHLPLMLDICREIL 241
Query: 1004 DYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTL---QAGHFDPTPCYCI 1060
+ +L +F + ++ + G G L +AG TP +
Sbjct: 242 S-PKALGLVLTAYSIRASFY--SMHELMRETMRGAGGVVASGELVIREAGLDGKTPGRVL 298
Query: 1061 GC 1062
Sbjct: 299 ST 300
Score = 28.2 bits (62), Expect = 7.3
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 20/101 (19%)
Query: 793 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN-------NPGCTVFV 845
RPL+ L +F G S +G ++ A K N
Sbjct: 131 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 188
Query: 846 DDCNKILQR-----------VIDNEVWGKGKNQTNKPEEKD 875
+D K +QR + D +G+G +
Sbjct: 189 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDH 229
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 30.2 bits (68), Expect = 0.47
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 1410 PPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEG 1469
PP + E L +EI KV + + ++ K EEQ + ++ EP+ E+E +
Sbjct: 36 PPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQ---RKIDEAEPLTEEEIQE 92
Query: 1470 NEEVMRE 1476
E ++ +
Sbjct: 93 KENLLSQ 99
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 32.3 bits (73), Expect = 0.47
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 791 SIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMN 837
+I P L+ + G A W + A K N
Sbjct: 42 NILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRN 88
Score = 31.9 bits (72), Expect = 0.60
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 882 SIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 928
+I P L+ + G A W + A K N
Sbjct: 42 NILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRN 88
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 31.2 bits (70), Expect = 0.85
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 5/108 (4%)
Query: 774 KNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAA 833
NK +K ++T+ L+ L+++ G G S R +E S+
Sbjct: 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKF 82
Query: 834 FK--MNNPGCTVFVDDCNKILQRVIDNEVWGKGKNQTNKPEEKDEITE 879
+ D + + + + + + D I +
Sbjct: 83 LNAKFEGSPLQILKRD---PYDWSTYSNLIDEERIFVPEVQSSDHIND 127
Score = 29.3 bits (65), Expect = 3.3
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 865 KNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 924
NK +K ++T+ L+ L+++ G G S R +E S+
Sbjct: 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKF 82
Query: 925 FK--MNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 964
+ D + + D+++ +P
Sbjct: 83 LNAKFEGSPLQILKRD---PYDWSTYSNLIDEERIFVPEVQS 121
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein
HypC {Shewanella oneidensis [TaxId: 70863]}
Length = 76
Score = 27.4 bits (61), Expect = 3.2
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 405 SALIGGEEVKVGDYVMV 421
S+ + E + +GDYV++
Sbjct: 31 SSHLMTEPLAIGDYVLI 47
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 29.5 bits (65), Expect = 3.4
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 783 KDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNN 838
+D I + P I + L+V G G LS K+G A+ ++ A +
Sbjct: 24 RDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIR 78
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 28.8 bits (63), Expect = 4.3
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 1/146 (0%)
Query: 586 YEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYT 645
+ + +K V + D + + + S+ T
Sbjct: 61 EDPKLDYIKRAVGLPGDKVTYDPV-SKELTIQPGCSSGQACENALPVTYSNVEPSDFVQT 119
Query: 646 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEE 705
+ G + F + K + + L+ +K + THR + D +Y+
Sbjct: 120 FSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPG 179
Query: 706 EQVSLSDVQGKCFVVCEDNLQISTDR 731
+Q++ V + + DN S D
Sbjct: 180 QQLATWIVPPGQYFMMGDNRDNSADS 205
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella
oneidensis [TaxId: 70863]}
Length = 387
Score = 29.1 bits (65), Expect = 4.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 743 NEAYNSKTEEFTNLPTEALFLGSVSKG 769
N A+N + FT+LP E LF+ +KG
Sbjct: 128 NRAHNGIYKRFTDLPDEKLFVDYNTKG 154
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 85
Score = 27.0 bits (60), Expect = 4.9
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 10/59 (16%)
Query: 404 KSALIGG-----EEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKC----HIL 453
G + ++ GD + V+S VG ++ K K H
Sbjct: 19 SDLFAPGIVSMDDSIRKGDMIFVKSSK-GYFIAVGMAEMDAGEVMATKRGKAARIIHFP 76
>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of
transcription activator BmrR {Bacillus subtilis [TaxId:
1423]}
Length = 157
Score = 28.1 bits (62), Expect = 5.0
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 624 EELYPEAYRKLSDYMKGSNAYTPAPFGIGY 653
E + +Y KL +++ ++ +T +G +
Sbjct: 25 ENVLNASYSKLKKFIESADGFTNNSYGATF 54
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 28.6 bits (63), Expect = 5.8
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 783 KDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCT 842
++ + + + L+V +G G L K+G AR I + ++ + + +
Sbjct: 22 RNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGI--ECSSISDYAVKIVKAN 78
Query: 843 VFVDDCNKILQRVIDNEVWGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGL 899
I +V + E+ + + + + L + + GL
Sbjct: 79 KLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL 135
Score = 28.2 bits (62), Expect = 8.2
Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 6/149 (4%)
Query: 874 KDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCT 933
++ + + + L+V +G G L K+G AR I + ++ + + +
Sbjct: 22 RNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGI--ECSSISDYAVKIVKAN 78
Query: 934 VFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKN 993
I +V + E+ +K + + L
Sbjct: 79 KLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138
Query: 994 SLIVSYL---SYCDYYRPRFFLLENVRNF 1019
Y+ Y + ENV F
Sbjct: 139 DRATLYVTAIEDRQYKDYKIHWWENVYGF 167
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis
[TaxId: 1423]}
Length = 137
Score = 27.6 bits (60), Expect = 6.7
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 8/99 (8%)
Query: 436 CYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHF 495
+ K K + + +++ ++ C D
Sbjct: 38 EAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTLCGDA----ADKCPMTPPH 93
Query: 496 PISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHAR 534
E+W G P E+E+ ++++ D + R
Sbjct: 94 VKREHW----GFDDPARAQGTEEEKWAFFQRVRDEIGNR 128
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4
[TaxId: 10665]}
Length = 89
Score = 26.3 bits (58), Expect = 8.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 1012 LLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAG 1050
++EN NF+AF N + + R L Q ++ L
Sbjct: 25 IVENRANFIAFLNEIGVTHEGRKLNQNSFRKIVSELTQE 63
Score = 26.3 bits (58), Expect = 8.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 1091 LLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAG 1129
++EN NF+AF N + + R L Q ++ L
Sbjct: 25 IVENRANFIAFLNEIGVTHEGRKLNQNSFRKIVSELTQE 63
>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 28.0 bits (62), Expect = 9.2
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 148 PSEEYRPFMKTVME-KIYLVKLVIELCREDENATFEDLLNTLQ 189
P EEY F + +++ ++++V + +C +D LL
Sbjct: 2 PEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLRIFL 44
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 28.0 bits (62), Expect = 9.4
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 1409 VPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEE 1449
+P A+ R++K+AL + V+ ++ E
Sbjct: 8 LPADPKAAI-RQMKQALRAQIGDVQAVFDRLSATIAARVAE 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,836,350
Number of extensions: 291707
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 53
Length of query: 1522
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1425
Effective length of database: 1,075,786
Effective search space: 1532995050
Effective search space used: 1532995050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)