BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16463
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 109 bits (272), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/56 (73%), Positives = 49/56 (87%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCR 284
+ AIDPNEPTYCLCNQVS+G+M+ CDN+ CP +WFHFSCV++T PKGKWYCP CR
Sbjct: 8 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCR 63
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 108 bits (271), Expect = 3e-24, Method: Composition-based stats.
Identities = 42/56 (75%), Positives = 48/56 (85%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCR 284
DL IDPNEPTYCLCNQVS+G+M+ CDND CP +WFHFSCV + + PKGKWYCP CR
Sbjct: 3 DLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 58
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 107 bits (266), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/56 (73%), Positives = 49/56 (87%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCR 284
+ AIDPNEPTYCLCNQVS+G+M+ CDN+ CP +WFHFSCV++T PKGKWYCP CR
Sbjct: 3 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCR 58
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 97.4 bits (241), Expect = 9e-21, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 46/57 (80%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRK 285
D+ +DPNEPTYCLC+QVS+G+M+ CDN C +WFHF+CV +T P+GKW+CP C +
Sbjct: 8 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 64
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 97.1 bits (240), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 47/59 (79%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKAR 287
D+ +DPNEPTYCLC+QVS+G+M+ CDN C +WFHF+CV +T P+GKW+CP C + R
Sbjct: 2 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 96.3 bits (238), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 46/57 (80%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRK 285
D+ +DPNEPTYCLC+QVS+G+M+ CDN C +WFHF+CV +T P+GKW+CP C +
Sbjct: 28 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 84
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 94.0 bits (232), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/59 (57%), Positives = 47/59 (79%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKAR 287
D+ +DPNEPTYCLC+QVS+G+M+ CD+ C +WFHF+CV +T P+GKW+CP C + R
Sbjct: 2 DMPVDPNEPTYCLCHQVSYGEMIGCDDPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 47/59 (79%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKAR 287
D+ +DPNEPTYCLC+QVS+G+M+ CDN C +WFHF+CV +T P+GKW+CP C + R
Sbjct: 2 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 90.1 bits (222), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 235 NEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNC 283
NEPTYCLC+QVS+G+M+ CDN CP +WFHF+CV +T PKGKW+CP C
Sbjct: 7 NEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRC 55
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 89.7 bits (221), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 42/53 (79%)
Query: 235 NEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKAR 287
NEPTYCLC+QVS+G+M+ CDN C +WFHF+CV +T P+GKW+CP C + R
Sbjct: 3 NEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 55
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 87.8 bits (216), Expect = 8e-18, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 37/48 (77%)
Query: 239 YCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKA 286
YC+CNQVS+G+MV CDN CP +WFH+ CV +T PKGKWYCP C A
Sbjct: 8 YCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAA 55
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 236 EPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCP-NCRKARSNAVRPK 294
E YC C VS+G MV CDN CP +WFH+ CV + PKGKWYC +C++ + + K
Sbjct: 25 EEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIANQRSKSK 84
Query: 295 KQ 296
+Q
Sbjct: 85 RQ 86
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|B Chain B, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|C Chain C, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|D Chain D, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|E Chain E, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|F Chain F, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins
Length = 104
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 29 YVETYLDIVENLPDEIQRYLTKIRELDVLYQSYMKEIEHIASQNGNKIDQFSRKRNLL-- 86
Y+E YLD +ENLP E+QR R+LD + EI+ +A++ + S + L
Sbjct: 5 YLEHYLDSIENLPFELQRNFQLXRDLDQRTEDLKAEIDKLATEYXSSARSLSSEEKLALL 64
Query: 87 -RVQVALIAAQEIGDEKLSIMQQVQDVIEGKTRQID 121
++Q A +E GD+K+ + Q + ++ R++D
Sbjct: 65 KQIQEAYGKCKEFGDDKVQLAXQTYEXVDKHIRRLD 100
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 237 PTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGK---WYCPNCRKARSNAVRP 293
P YCLC M + D+C WFH SCV V ++CPNC ++
Sbjct: 5 PVYCLCRLPYDVTRFMIECDMC-QDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMK 63
Query: 294 KKQLVERLEKYNKEKQEKIGN 314
K++ + +K K K G+
Sbjct: 64 KRRGSSKGHDTHKGKPVKTGS 84
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 248 GQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCP--NCRKARSNAV 291
G++VMCD CP +H C+ +T P GKW CP C + S AV
Sbjct: 25 GELVMCDKKDCPKA-YHLLCLNLTQPPYGKWECPWHQCDECSSAAV 69
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 237 PTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGK---WYCPNCRKARSNAVRP 293
P YC+C M + D C WFH SCV V ++CPNC K +
Sbjct: 10 PVYCVCRLPYDVTRFMIECDAC-KDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLK 68
Query: 294 KKQ 296
KK+
Sbjct: 69 KKR 71
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 237 PTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGK---WYCPNC 283
P YCLC Q M + LC WFH SCV + ++CP+C
Sbjct: 12 PVYCLCRQPYNVNHFMIECGLC-QDWFHGSCVGIEEENAVDIDIYHCPDC 60
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 238 TYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTN---TPKGKWYCPNCRKARSNAVRPK 294
YC+C Q M + D+C WFH SCV V ++CPNC AV
Sbjct: 38 VYCVCRQPYDVNRFMIECDICK-DWFHGSCVGVEEHHAVDIDLYHCPNC------AVLHG 90
Query: 295 KQLVERLEKYNKEKQEKIGNMSK 317
L+++ +++ +I + SK
Sbjct: 91 SSLMKKRRNWHRHDYTEIDDGSK 113
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 34.7 bits (78), Expect = 0.081, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 242 CNQVSFGQ-MVMCDNDLCPHQWFHFSCVAVTNTP--KGKWYCPNCRKARSNAVRPKKQ 296
CN+ G M+ CD+ C W+H+ CV + P + +W+CP C +N ++ K+
Sbjct: 24 CNKPDDGSPMIGCDD--C-DDWYHWPCVGIMAAPPEEMQWFCPKC----ANKIKKDKK 74
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 34.3 bits (77), Expect = 0.097, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 248 GQMVMCDNDLCPHQWFHFSCVA--VTNTPKGKWYCPNCRKARSNAVRPKKQ 296
G+++ CD CP FH +C++ + P G W C +C +A V+P+ +
Sbjct: 18 GELICCDG--CPRA-FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAE 65
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 33.1 bits (74), Expect = 0.19, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCR 284
GQ++MCD C + +H C+ + PKG W CP C+
Sbjct: 19 GQLLMCDT--CS-RVYHLDCLDPPLKTIPKGMWICPRCQ 54
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 234 PNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVA--VTNTPKGKWYCPNCR 284
PNE +C G+++ C+ CP + FH SC +TN P G+W C CR
Sbjct: 2 PNEDWCAVCQNG--GELLCCEK--CP-KVFHLSCHVPTLTNFPSGEWICTFCR 49
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 239 YC-LCNQVSFGQMVMCDNDLCPHQWFHFSCVA--VTNTPKGKWYCPNCRK 285
YC +C Q G++++CD CP +H C+ + P+GKW CP+C K
Sbjct: 13 YCEVCQQ--GGEIILCDT--CPRA-YHMVCLDPDMEKAPEGKWSCPHCEK 57
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 32.7 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNC 283
G+++ CD CP +H C+ A+ P G+W CP C
Sbjct: 19 GELLCCDT--CPSS-YHIHCLRPALYEVPDGEWQCPRC 53
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 32.0 bits (71), Expect = 0.44, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCR 284
GQ++MCD C + +H C+ + PKG W CP C+
Sbjct: 15 GQLLMCDT--CS-RVYHLDCLDPPLKTIPKGMWICPRCQ 50
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 31.2 bits (69), Expect = 0.85, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 248 GQMVMCDNDLCPHQWFHFSCVA--VTNTPKGKWYCPNCRKA 286
G+++ CD CP FH +C++ + P G W C +C +A
Sbjct: 15 GELICCDG--CPRA-FHLACLSPPLREIPSGTWRCSSCLQA 52
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNC 283
G+++ CD CP +H C+ + P G+W CP C
Sbjct: 19 GELLCCDT--CPSS-YHIHCLNPPLPEIPNGEWLCPRC 53
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 29.3 bits (64), Expect = 2.7, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 249 QMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRKA 286
++++CD C ++ FH C+ A+ P G+W CP C+ A
Sbjct: 14 KLILCDE--C-NKAFHLFCLRPALYEVPDGEWQCPACQPA 50
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
pdb|1XR2|B Chain B, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
Length = 766
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 98 IGDEKLSIMQQVQDVIEGKTRQIDGIFY--------------NLPSVTSRREQEAVETSV 143
EKL ++ ++D +EGKT + + + NLP + RRE+E E
Sbjct: 366 FAKEKLEELKMLKDFLEGKTFDLPNVSFEDFAVDLQAVERVRNLPEDSFRREKEYTERDR 425
Query: 144 KHDEAV------STEKTQQSETPVAPKKRQRKKNTEVDSEMIEC 181
E + +T +TP K R + + E+ E E
Sbjct: 426 IQRERLNLPLFPTTTIGSFPQTPEVRKMRSKYRKGEISKEEYEA 469
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 27.7 bits (60), Expect = 8.0, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 264 HFSCVAVTNTPKGKWYCPNCRKARS 288
H C V P+G+W C +C ++R+
Sbjct: 44 HQECYGVPYIPEGQWLCRHCLQSRA 68
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|1T7L|B Chain B, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|3BQ5|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ5|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ6|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
pdb|3BQ6|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
Length = 766
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 98 IGDEKLSIMQQVQDVIEGKTRQIDGIFY--------------NLPSVTSRREQEAVETSV 143
EKL ++ ++D +EGKT + + + NLP + RRE+E E
Sbjct: 366 FAKEKLEELKMLKDFLEGKTFDLPNVSFEDFAVDLQAVERVRNLPEDSFRREKEYTERDR 425
Query: 144 KHDEAV------STEKTQQSETPVAPKKRQRKKNTEVDSEMIEC 181
E + +T +TP K R + + E+ E E
Sbjct: 426 IQRERLNLPLFPTTTIGSFPQTPEVRKMRSKYRKGEISKEEYEA 469
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,220,980
Number of Sequences: 62578
Number of extensions: 299073
Number of successful extensions: 765
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 44
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)