RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16463
(317 letters)
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural
genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 107 bits (269), Expect = 5e-30
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 222 ATPPPDEDLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCP 281
+ D+ +DPNEPTYCLC+QVS+G+M+ CDN C +WFHF+CV +T P+GKW+CP
Sbjct: 1 GSSGSSGDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 60
Query: 282 NCRK 285
C +
Sbjct: 61 RCSQ 64
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 107 bits (268), Expect = 1e-29
Identities = 37/86 (43%), Positives = 50/86 (58%)
Query: 203 SGGKKKKRKTKQQRECEKEATPPPDEDLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQW 262
S G + P D+ +DPNEPTYCLC+QVS+G+M+ CDN C +W
Sbjct: 2 SSGSSGSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEW 61
Query: 263 FHFSCVAVTNTPKGKWYCPNCRKARS 288
FHF+CV +T P+GKW+CP C +
Sbjct: 62 FHFACVGLTTKPRGKWFCPRCSQESG 87
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 105 bits (264), Expect = 3e-29
Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 228 EDLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKAR 287
+ AIDPNEPTYCLCNQVS+G+M+ CDN+ CP +WFHFSCV++T PKGKWYCP CR
Sbjct: 2 SEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDN 61
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Length = 60
Score = 104 bits (261), Expect = 8e-29
Identities = 35/59 (59%), Positives = 47/59 (79%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKAR 287
D+ +DPNEPTYCLC+QVS+G+M+ CDN C +WFHF+CV +T P+GKW+CP C + R
Sbjct: 2 DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 104 bits (260), Expect = 1e-28
Identities = 32/64 (50%), Positives = 38/64 (59%)
Query: 233 DPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKARSNAVR 292
YC+CNQVS+G+MV CDN CP +WFH+ CV +T PKGKWYCP C A
Sbjct: 2 SSGSSGYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGS 61
Query: 293 PKKQ 296
K
Sbjct: 62 RHKS 65
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 101 bits (254), Expect = 8e-28
Identities = 33/53 (62%), Positives = 43/53 (81%)
Query: 235 NEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKAR 287
NEPTYCLC+QVS+G+M+ CDN CP +WFHF+CV +T PKGKW+CP C + +
Sbjct: 7 NEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQEK 59
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 101 bits (253), Expect = 2e-27
Identities = 31/78 (39%), Positives = 38/78 (48%)
Query: 219 EKEATPPPDEDLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKW 278
E D + E YC C VS+G MV CDN CP +WFH+ CV + PKGKW
Sbjct: 8 ASEFINQGDVTEGNNNQEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKW 67
Query: 279 YCPNCRKARSNAVRPKKQ 296
YC K +N K+
Sbjct: 68 YCSKDCKEIANQRSKSKR 85
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour
suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Length = 104
Score = 80.7 bits (199), Expect = 2e-19
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 29 YVETYLDIVENLPDEIQRYLTKIRELDVLYQSYMKEIEHIASQ---NGNKIDQFSRKRNL 85
Y+E YLD +ENLP E+QR +R+LD + EI+ +A++ + + + L
Sbjct: 5 YLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALL 64
Query: 86 LRVQVALIAAQEIGDEKLSIMQQVQDVIEGKTRQID 121
++Q A +E GD+K+ + Q ++++ R++D
Sbjct: 65 KQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLD 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 70.3 bits (172), Expect = 8e-16
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 233 DPNEPTYC-LCNQVSFG-QMVMCDNDLCPHQWFHFSCVAVTNTP--KGKWYCPNCRKARS 288
N+ C CN+ G M+ CD+ C W+H+ CV + P + +W+CP C
Sbjct: 14 WGNQIWICPGCNKPDDGSPMIGCDD--CDD-WYHWPCVGIMAAPPEEMQWFCPKCANKIK 70
Query: 289 NAVRPKKQ 296
+ KK
Sbjct: 71 ---KDKKH 75
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 63.0 bits (153), Expect = 4e-13
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 223 TPPPDEDLAIDPNEPTYCLCNQVSFGQ-MVMCDNDLCPHQWFHFSCVAVT-------NTP 274
+ + + YC+C Q + M+ CD C +WFH CV ++
Sbjct: 2 SSGSSGECEVYDPNALYCICRQPHNNRFMICCDR--C-EEWFHGDCVGISEARGRLLERN 58
Query: 275 KGKWYCPNCRK 285
+ CPNC
Sbjct: 59 GEDYICPNCTI 69
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 59.3 bits (143), Expect = 7e-12
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 222 ATPPPDEDLAIDPNEPTYCLC-NQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKG---- 276
+ + P C+C N + M+ C++ C H W H CV + + P
Sbjct: 1 GSSGSSGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRC-HVWQHVGCVILPDKPMDGNPP 59
Query: 277 ---KWYCPNCRKAR 287
+YC CR
Sbjct: 60 LPESFYCEICRLTS 73
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 56.1 bits (135), Expect = 1e-10
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 224 PPPDEDLAIDPNEPTYCLCNQVSF--GQMVMCDNDLCPHQWFHFSCVAVTNT---PKGKW 278
P P YC+C M+ CD C WFH SCV V +
Sbjct: 2 PLGSMA-----TVPVYCVCRLPYDVTRFMIECDA--C-KDWFHGSCVGVEEEEAPDIDIY 53
Query: 279 YCPNCRKARSNAVRPKKQLVER 300
+CPNC K + KK+ +
Sbjct: 54 HCPNCEKTHGKSTLKKKRTWHK 75
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 55.7 bits (134), Expect = 1e-10
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 236 EPTYCLCNQVSFG--QMVMCDNDLCPHQWFHFSCVAVTNTPKG---KWYCPNCRKARS 288
P YCLC Q M+ C C WFH SCV + ++CP+C
Sbjct: 11 VPVYCLCRQPYNVNHFMIECGL--C-QDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 55.7 bits (134), Expect = 2e-10
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 213 KQQRECEKEATPPPDEDLAIDPNEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV--A 269
+ + DE +D + T C +C + G +VMC+ C FH C A
Sbjct: 2 RGSHHHHHHGSDIIDEFGTLDDSA-TICRVCQKP--GDLVMCNQ--CEFC-FHLDCHLPA 55
Query: 270 VTNTPKGKWYCPNCR 284
+ + P +W C C
Sbjct: 56 LQDVPGEEWSCSLCH 70
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 54.2 bits (130), Expect = 4e-10
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 232 IDPNEPTYCLC-NQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKG------KWYCPNCR 284
P C+C + + M+ C++ C W H +CV + + P +YC CR
Sbjct: 5 FQPEAKVRCICSSTMVNDSMIQCEDQRC-QVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63
Query: 285 KARS 288
+R+
Sbjct: 64 LSRA 67
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC,
structural genom type zinc finger, protein binding, zinc
ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 52.9 bits (127), Expect = 1e-09
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 233 DPNEPTYCLCNQVSFGQ-MVMCDNDLCPHQWFHFSCVAVTNTPKG-KWYCPNCRKAR 287
C C + G+ M+ C+ C H W H SC + + + C CR ++
Sbjct: 15 YFQGLVTCFCMKPFAGRPMIECNE--C-HTWIHLSCAKIRKSNVPEVFVCQKCRDSK 68
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 49.8 bits (119), Expect = 1e-08
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 233 DPNEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRKARSN 289
NE C +C G+++ CD CP FH +C+ + P G W C +C +A
Sbjct: 5 QKNE-DECAVCRDG--GELICCDG--CPRA-FHLACLSPPLREIPSGTWRCSSCLQATVQ 58
Query: 290 AVRPKKQ 296
V+P+ +
Sbjct: 59 EVQPRAE 65
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 48.5 bits (116), Expect = 3e-08
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 236 EPTYCLCNQV-SFGQMVMCDNDLCPHQWFHFSCVAVT-NTPKGKWYCPNCRKA 286
+ C C + + M+ C+ C H W H SC + + + C CR +
Sbjct: 3 DLVTCFCMKPFAGRPMIECNE--C-HTWIHLSCAKIRKSNVPEVFVCQKCRDS 52
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 48.4 bits (115), Expect = 3e-08
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 238 TYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTP--KGKWYCPNC 283
C V CD C +WFH CV V+ + C NC
Sbjct: 6 QNCQRPCKDKVDWVQCDGG-C-DEWFHQVCVGVSPEMAENEDYICINC 51
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein;
NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Length = 61
Score = 48.5 bits (116), Expect = 3e-08
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 233 DPNEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCR 284
D + +C +C G+++ CD CP +H C+ + P G+W CP C
Sbjct: 6 DHHM-EFCRVCKDG--GELLCCDT--CPSS-YHIHCLNPPLPEIPNGEWLCPRCT 54
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 47.7 bits (114), Expect = 6e-08
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 233 DPNEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRK 285
+E +C +C + GQ++MCD C +H C+ + PKG W CP C+
Sbjct: 6 SGHE-DFCSVCRKS--GQLLMCDT--CSRV-YHLDCLDPPLKTIPKGMWICPRCQD 55
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 47.8 bits (114), Expect = 7e-08
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 233 DPNEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRK 285
++ YC +C Q G++++CD CP +H C+ + P+GKW CP+C K
Sbjct: 8 TDHQ-DYCEVCQQG--GEIILCDT--CPRA-YHMVCLDPDMEKAPEGKWSCPHCEK 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 2e-07
Identities = 43/257 (16%), Positives = 76/257 (29%), Gaps = 76/257 (29%)
Query: 8 QGQQSPNM---------LNQAVLEAMYSVPYVETY----LDIVENLPDEIQRYLT----- 49
QG Q M Q V + +TY LDIV N P + +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRA-DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 50 KIRELDVLYQSYMKEIEHIASQNGNKIDQ----------FSRKRNLLRV----QVALIAA 95
+IRE Y + + E KI + F ++ LL Q AL
Sbjct: 1683 RIRE---NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 96 QEIGDEKLSIMQQVQDVIEGKTRQIDGIF-------YN--------LP-----SVTSRRE 135
+ + + ++ +G D F Y + V R
Sbjct: 1740 E------KAAFEDLKS--KGLI-PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 136 QEAVETSVKHDEAVSTEKTQQSETPVAPKKRQRKKNTEVDSEMIECSSTPLPRSSATIAV 195
++ +V DE ++ + P + + E ++E R+ + +
Sbjct: 1791 M-TMQVAVPRDEL---GRSNYGMIAINPGRVAASFSQEALQYVVERVGK---RTGWLVEI 1843
Query: 196 V--KKPSTQ--SGGKKK 208
V + Q + G +
Sbjct: 1844 VNYNVENQQYVAAGDLR 1860
Score = 30.4 bits (68), Expect = 0.97
Identities = 32/149 (21%), Positives = 42/149 (28%), Gaps = 62/149 (41%)
Query: 179 IECSSTPLPRSSATIAVVKKPSTQSGGKKKKRKTKQQRECEKEATPPPDEDLAIDPNEPT 238
+E +P +S IA Q +E + P P E A D +EPT
Sbjct: 16 LEHV-LLVPTASFFIA------------------SQLQEQFNKILPEPTEGFAAD-DEPT 55
Query: 239 -----------YC----------LCNQV------SFGQMVMCDNDLCPHQWFHFSCVAV- 270
Y +QV F + ND+ H +A
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--H------ALAAK 107
Query: 271 ------TNTPKGKWYCPNCRKARSNAVRP 293
T K K N AR A RP
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRP 136
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 45.1 bits (107), Expect = 5e-07
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRKARSN 289
GQ++MCD C +H C+ + PKG W CP C+
Sbjct: 15 GQLLMCDT--CSRV-YHLDCLDPPLKTIPKGMWICPRCQDQMLK 55
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 45.4 bits (107), Expect = 9e-07
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 205 GKKKKRKTKQQRECEKEATPPPDEDLAIDPNEPTYCL-CNQV---SFGQMVMCDNDLCPH 260
+ K+ K + DED C C + ++ CD C
Sbjct: 1 ARTKQTARKSTGGSSGSSQSLIDED--------AVCSICMDGESQNSNVILFCDM--CNL 50
Query: 261 QWFHFSCVAVTNTPKGKWYCPNCRKARSNAV 291
H C V P+G+W C +C ++R+
Sbjct: 51 A-VHQECYGVPYIPEGQWLCRHCLQSRARPA 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 44.4 bits (105), Expect = 1e-06
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 240 CLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKG---KWYCPNCRK 285
C + + + CD C WFH CV +T ++ CP+C
Sbjct: 12 CGESYAADEFWICCDL--C-EMWFHGKCVKITPARAEHIKQYKCPSCSN 57
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 47.7 bits (112), Expect = 2e-06
Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 203 SGGKKKKRKTKQQRECEKEATPPPDEDLAIDPNEPTYCLCNQVSFGQ--MVMCDNDLCPH 260
+ P A P P YC+C Q M+ CD C
Sbjct: 3 GAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVYCVCRQPYDVNRFMIECDI--C-K 59
Query: 261 QWFHFSCVAVTNTPKGK---WYCPNCR 284
WFH SCV V ++CPNC
Sbjct: 60 DWFHGSCVGVEEHHAVDIDLYHCPNCA 86
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 47.8 bits (112), Expect = 2e-06
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 18/127 (14%)
Query: 197 KKPSTQSGGKKKKRKTKQQRECEKEATPPPDEDLAIDPNEPTYCLC-----NQVSFGQMV 251
K P + T + E ++ E ++ + Q +
Sbjct: 7 KTPKESDRCGGCGKFTHEDDLIALEEEKKKEK-------EKPLMSKKKSHHHKKNDFQWI 59
Query: 252 MCDNDLCPHQWFHFSCVAVTNT---PKGKWYCPNCRKARSNAVRPKKQLVERLEKYNKEK 308
CD+ C W+HF C + K++CP C +++R K R Y+ +
Sbjct: 60 GCDS--CQ-TWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYKVVAPHRYRWYSPNE 116
Query: 309 QEKIGNM 315
+ +
Sbjct: 117 KHLGIEV 123
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 43.8 bits (102), Expect = 5e-06
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 10/65 (15%)
Query: 240 CLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVT--------NTPKGKWYCPNCRKARSNAV 291
C ++C+ C +WFH C +T W C C K + +
Sbjct: 9 CRSEVNDDQDAILCEAS-C-QKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSG 66
Query: 292 RPKKQ 296
Sbjct: 67 SGSGS 71
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 42.6 bits (100), Expect = 6e-06
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 249 QMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKARSNA 290
++ CD C H C V P+G+W C +C ++R+
Sbjct: 32 VILFCDM--CNLA-VHQECYGVPYIPEGQWLCRHCLQSRARP 70
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 43.0 bits (101), Expect = 6e-06
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRKARSNAVRPKKQLVERLEKYN 305
+++ CD C + H C+ + P+G W CP C A + ++Y+
Sbjct: 29 DKLLFCDG--CDDNY-HIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYS 85
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 45.7 bits (107), Expect = 1e-05
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 235 NEPTYCLCNQV--SFGQMVMCDNDLCPHQWFHFSCVAVTNTPK---GKWYCPNCRKARSN 289
+ P YCLC M+ CD C WFH SCV V ++CPNC
Sbjct: 3 SVPVYCLCRLPYDVTRFMIECDM--C-QDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59
Query: 290 AVRPKKQLVERLEKYNKEKQEKIGNM 315
++ K++ + +K K K G+
Sbjct: 60 SIMKKRRGSSKGHDTHKGKPVKTGSP 85
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 41.4 bits (97), Expect = 2e-05
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 235 NEPTYCLCNQV--SFGQMVMCDNDLCPHQWFHFSCVAVTNTPK--GKWYCPNCRKAR 287
N C C +M+ CD C W H C+ + N K+ C C +
Sbjct: 14 NWKVDCKCGTKDDDGERMLACDG--C-GVWHHTRCIGINNADALPSKFLCFRCIELS 67
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 41.6 bits (97), Expect = 3e-05
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 240 CLCNQVSFGQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCR 284
C + M+ CD+ C FH C +T PKG W C CR
Sbjct: 67 CRDQGKNADNMLFCDS--CDRG-FHMECCDPPLTRMPKGMWICQICR 110
Score = 29.3 bits (65), Expect = 0.72
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV-----AVTNTPKGKWYCPNCR 284
+++ C + C H SC+ +W C C+
Sbjct: 24 EELISCAD--CG-NSGHPSCLKFSPELTVRVKALRWQCIECK 62
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 39.2 bits (92), Expect = 5e-05
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 249 QMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRKA 286
++++CD C + H C+ A+ P G+W CP C+ A
Sbjct: 14 KLILCDE--CNKAF-HLFCLRPALYEVPDGEWQCPACQPA 50
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 40.3 bits (94), Expect = 9e-05
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 248 GQMVMCDNDLCPHQWFHFSCVA--VTNTPKGKWYCPNCRKARS 288
+M++CD C +H C+ + + P W C NCR S
Sbjct: 67 SKMLVCDT--CDKG-YHTFCLQPVMKSVPTNGWKCKNCRICIS 106
Score = 34.2 bits (78), Expect = 0.012
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 249 QMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCR 284
C C Q +H C+ AVT + W CP C+
Sbjct: 21 DQFFCTT--CG-QHYHGMCLDIAVTPLKRAGWQCPECK 55
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 38.9 bits (90), Expect = 1e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 15/64 (23%)
Query: 234 PNEPTYCLC----NQVSFGQ-MVMCDNDLCPHQWFHFSCVAVT--------NTPKGKWYC 280
+ C N+V+ Q ++C+ C +WFH C +T W C
Sbjct: 3 SSSDPVYPCGICTNEVNDDQDAILCEAS-C-QKWFHRICTGMTETAYGLLTAEASAVWGC 60
Query: 281 PNCR 284
C
Sbjct: 61 DTCM 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 41/361 (11%), Positives = 95/361 (26%), Gaps = 111/361 (30%)
Query: 20 VLEAMY----SVPYVETYLD--IVENLPDEI--------QRYLTKIRELDVLY----QSY 61
+++ + + ++ L + + +I T + L L ++
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 62 MKEIEHIASQNGNKIDQFSRKRNLLRVQV---ALIAAQEIGDEKLSIMQQVQD--VIEG- 115
+H ++ + R LL+ + L+ ++ VQ+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----------VLLNVQNAKAWNAF 262
Query: 116 ----K----TRQIDGIFYNLPSVTSRREQEAVETSVKHDEAVSTEKTQQSETPVAPKKRQ 167
K TR + + T+ + ++ DE
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK------------------ 304
Query: 168 RKKNTEVDSEMIECSSTPLPRSSATIAVVKKPSTQS--GGKKKKRKTK----QQRECEK- 220
+ + ++C LPR T P S + + C+K
Sbjct: 305 -----SLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 221 --------EATPPPD-----EDLAI---DPNEPTYCLC----NQVSFGQMVMCDNDLCPH 260
P + + L++ + PT L + + MV+ +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----- 410
Query: 261 QWFHFSCVAVTNTPKGKWYCPNC----RKARSNAVRPKKQLVERLEKYNKEKQEKIGNMS 316
H + + P+ + N + +V+ YN K ++
Sbjct: 411 --LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---YNIPKTFDSDDLI 465
Query: 317 K 317
Sbjct: 466 P 466
Score = 37.5 bits (86), Expect = 0.006
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 37 VENLPDEIQRYLTKIRELDVLYQSYMKEIEHIASQNGNKIDQFSRKRNLLRVQVALIAAQ 96
+ N +++ Y I + D Y+ + I + + S+ +L +++AL+A
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC-SKYTDL--LRIALMAED 576
Query: 97 E-IGDEKLSIMQQ 108
E I +E +Q+
Sbjct: 577 EAIFEEAHKQVQR 589
Score = 28.7 bits (63), Expect = 3.1
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 19/96 (19%)
Query: 228 EDLAIDPN--EPTY----CLCNQVS-----FGQMVMCDNDLCPHQWFHFSCVAVTNTPKG 276
+ + + + T L ++ F + V+ N +++ P
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSM 107
Query: 277 --KWYCPNCRKARSNAVRP-KKQLVERLEKYNKEKQ 309
+ Y R N + K V RL+ Y K +Q
Sbjct: 108 MTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 40.6 bits (94), Expect = 1e-04
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 206 KKKKRKTKQQRECEKEATPPPDEDLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHF 265
+ + + C K D + C + G ++ CD C + F
Sbjct: 34 RHPSLQVLICKNCFKYYMSDDISR-DSDGMDEQCRWCAEG--GNLICCDF--CHNA-FCK 87
Query: 266 SCV---------AVTNTPKGKWYCPNCR-KARSNAVRPKKQLVERLEKYNKEKQE 310
C+ + +WYC C + + V + E LE+ ++ ++
Sbjct: 88 KCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFENLEQLLQQNKK 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 40.0 bits (93), Expect = 1e-04
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRKARS 288
Q++ CD+ C +H C+ V P+G W C C +
Sbjct: 71 DQLLFCDD--CDRG-YHMYCLNPPVAEPPEGSWSCHLCWELLK 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 40.2 bits (93), Expect = 2e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCR 284
G +VMC+ C FH C A+ + P +W C C
Sbjct: 12 GDLVMCNQ--CEF-CFHLDCHLPALQDVPGEEWSCSLCH 47
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 39.8 bits (92), Expect = 3e-04
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 233 DPNEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV--------AVTNTPKGKWYCPNC 283
D + YC +C +++MC N+ C F CV A + W C C
Sbjct: 76 DGYQS-YCTICCGG--REVLMCGNNNCCRC-FCVECVDLLVGPGAAQAAIKEDPWNCYMC 131
Query: 284 R-KARSNAVRPKKQLVERLEKY 304
K +R ++ RL+ +
Sbjct: 132 GHKGTYGLLRRREDWPSRLQMF 153
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 38.6 bits (89), Expect = 5e-04
Identities = 17/98 (17%), Positives = 26/98 (26%), Gaps = 26/98 (26%)
Query: 216 RECEKEATPPPDEDLAIDPNEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV------ 268
+ D D + C C + G ++ CD C + F C+
Sbjct: 41 FKYYMSDDISRDSDGMDE-----QCRWCAEG--GNLICCDF--CHNA-FCKKCILRNLGR 90
Query: 269 ---AVTNTPKGKWYCPNCRKARSNAVRPKKQLVERLEK 303
+ +WYC C P LV
Sbjct: 91 RELSTIMDENNQWYCYICHP------EPLLDLVTACNS 122
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 36.8 bits (85), Expect = 6e-04
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 249 QMVMCDNDLCPHQWFHFSC-----VAVTNTPKGKWYCPNCRKARS 288
+MV+CD C Q +H C + KW C C A +
Sbjct: 22 EMVICDK--C-GQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 37.0 bits (85), Expect = 8e-04
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 249 QMVMCDNDLCPHQWFHFSC------VAVTNTPKGKWYCPNCRKARSNAVRPKKQ 296
Q+V C C H +H C N P+ WYC C + + ++
Sbjct: 32 QLVECQE--C-HNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQK 82
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 36.4 bits (84), Expect = 0.001
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTP-KGKWYCPNCRK 285
+ +MCD C FH C+ +++ P + +WYCP CR
Sbjct: 39 DKQLMCDE--CDM-AFHIYCLDPPLSSVPSEDEWYCPECRN 76
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 37.9 bits (88), Expect = 0.001
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 233 DPNEPTYCLCNQV--SFGQMVMCDNDLCPHQWFHFSCVAVTNT---PKGKWYCPNCRKAR 287
+ YC+C + CD C W+H CV + + ++ CP C+
Sbjct: 4 GSDTKLYCICKTPEDESKFYIGCD--RCQ-NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60
Query: 288 SNAVRPKKQLVERLEK 303
+ E
Sbjct: 61 DAMTVLTPLTEKDYEG 76
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTP-KGKWYCPNCRK 285
+ +MCD C FH C+ +++ P + +WYCP CR
Sbjct: 31 DKQLMCDE--CDM-AFHIYCLDPPLSSVPSEDEWYCPECRN 68
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 35.6 bits (82), Expect = 0.002
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 249 QMVMCDNDLCPHQWFHFSCV--AVTNTPKG-KWYCPNCRK 285
++CD C +H C+ + P+ WYCP+C+
Sbjct: 40 MQLLCDE--CNV-AYHIYCLNPPLDKVPEEEYWYCPSCKT 76
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 37.4 bits (86), Expect = 0.003
Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 31/166 (18%)
Query: 141 TSVKHDEAVSTEKTQQSETPVAPKKRQRKKNTEVDSEMIECSSTPLPRSSATIAVVKKPS 200
T +K + + + P PK+R + E+ + R++ +
Sbjct: 69 TIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRE-------TRTARELYANVVLG 121
Query: 201 TQSGGKKKKRKTKQQRECEKEATPPPDEDLAIDPNEPTYCLCNQVSF------------- 247
S + + + E+ P D + C +
Sbjct: 122 DDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCG 181
Query: 248 -----GQMVMCDNDLCPHQWFHFSCV--AVTNTP-KGKWYCPNCRK 285
+ +MCD C FH C+ +++ P + +WYCP CR
Sbjct: 182 GRQDPDKQLMCDE--CDM-AFHIYCLDPPLSSVPSEDEWYCPECRN 224
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 36.9 bits (84), Expect = 0.007
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 218 CEKEATPPPDEDLAIDPNE-PTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV------- 268
C D D + +YC +C +++C N C + F CV
Sbjct: 73 CAPCKDKFLDALFLYDDDGYQSYCSICCSG--ETLLICGNPDCTRC-YCFECVDSLVGPG 129
Query: 269 -AVTNTPKGKWYCPNCR-KARSNAVRPKKQLVERLEKY 304
+ W C C +RS ++ +++ +L+ +
Sbjct: 130 TSGKVHAMSNWVCYLCLPSSRSGLLQRRRKWRSQLKAF 167
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 33.4 bits (76), Expect = 0.044
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRKARSNAVRPKKQLVERLEKYN 305
G+++ C+ CP + FH SC +TN P G+W C CR V +
Sbjct: 14 GELLCCE--KCP-KVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKK 70
Query: 306 KEKQEK 311
K +
Sbjct: 71 KTEGLV 76
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding,
cell inner membrane, cell membrane, kinase, membrane;
2.70A {Escherichia coli k-12}
Length = 290
Score = 32.2 bits (72), Expect = 0.18
Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 33 YLDIVENLPDEIQRYLTKIRELDVLYQSYMKEIEHIASQNGNKIDQFSRKRNLLRVQVAL 92
Y I ++ + L ++ ++D+ Y + M E+ A + + ++
Sbjct: 144 YDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAP--- 200
Query: 93 IAAQEIGDEKLSIMQQVQDVIEGKTRQ 119
++ + + I+Q+ Q IE +
Sbjct: 201 -TLEKQLNNAVKILQRRQIRIEDPGVR 226
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 31.6 bits (71), Expect = 0.22
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 234 PNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCR 284
P+ C Q C+ C + H CVA + CP+C
Sbjct: 177 PDAVKICNICHSLLIQGQSCET--CGIR-MHLPCVAKYFQSNAEPRCPHCN 224
>2r6a_C DNAG primase, helicase binding domain, replicative helicase;
replication, DNAB; 2.90A {Geobacillus
stearothermophilus} PDB: 2r6c_G 1z8s_A*
Length = 143
Score = 30.9 bits (70), Expect = 0.23
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 21 LEAMYSVPYVETYLDIVENLPDEIQRYLTKIRELDVLYQSYMKEIE-HIASQNGNKIDQF 79
+ A Y + ++ +P E+Q +++ L + +E+E +I +
Sbjct: 47 IYAFYEEGHEADPGALISRIPGELQPLASELSLLLIADDVSEQELEDYI-----RHVLNR 101
Query: 80 SRKRNLLRVQVALIAAQEIGD--EKLSIMQQVQD 111
+ L + A+ D I +++ +
Sbjct: 102 PKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIE 135
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 29.0 bits (65), Expect = 0.47
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 258 CPHQWFHFSCVAVTNTPKGKWY-----CPNCRKARSNAVRPKKQLVERLEKYNKEK 308
C H +F SC + + C C + P K+L+ +L+K
Sbjct: 33 CRH-YFCESCAL-------EHFRATPRCYICDQPTGGIFNPAKELMAKLQKSGPSS 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 30.3 bits (67), Expect = 0.62
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 239 YC-LCNQV-----SFGQMVMCDNDLCPHQWFHFSCVAVTNTP---------KGKWYCPNC 283
+C LC++ +M+ C +W H C +++ + C NC
Sbjct: 4 FCPLCDKCYDDDDYESKMMQCG---KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 60
Query: 284 R 284
Sbjct: 61 T 61
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.96
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 28/95 (29%)
Query: 148 AVSTEKTQQSETPVAPKKRQRKKNTEVDSEMIECSSTPLPRSSATIAVVKKPSTQSGGKK 207
A + TQ+ E+ ++ QRK+ E+D+ + + KK
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKV----------------MEQEWREKAKK 118
Query: 208 -----------KKRKTK-QQRECEKEATPPPDEDL 230
+ K K R +K PD D+
Sbjct: 119 DLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 27.8 bits (61), Expect = 3.4
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 52 RELDVLYQSYMKEIEHIASQNGNKIDQFSRKRN 84
++L+ Q +++E N F ++ +
Sbjct: 118 KDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 29.6 bits (65), Expect = 1.3
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 206 KKKKRKTKQQRECEKEATPPPDEDLAIDPNEPTYCLCNQVSFGQMVM-CDNDLCPH-QWF 263
K K + + D D I L + ++ + C C H Q F
Sbjct: 181 KMKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCF 240
Query: 264 HFSCVAVTNTPKGKWYCPNCRK 285
+ N K W CP C K
Sbjct: 241 DAALYLQMNEKKPTWICPVCDK 262
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 26.8 bits (60), Expect = 1.6
Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 13/33 (39%)
Query: 258 CPHQWFHFSCVAVTNTPKGKW-----YCPNCRK 285
C H H +C + CP C
Sbjct: 27 CGH-LLHRTCYE-------EMLKEGYRCPLCSG 51
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 29.3 bits (65), Expect = 2.1
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 119 QIDGIFYNLPSVTSRREQEAVETSVKHDEAVSTEKTQQSETPVAPKKRQRKKNTEVDSEM 178
+++ I+ N+ SV + RE+ + + + S TP+A + +K E
Sbjct: 428 RVESIYLNVESVCTHRERSE-----DAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEH 482
Query: 179 IECSSTPLPRSSATIAVVKKPSTQSGGKKKKRKTKQQ 215
+ +S LP + P G + + ++
Sbjct: 483 VASTSAALPSCLPPEVPTQLPGQNMKGSRSSADSSRK 519
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 28.7 bits (63), Expect = 2.5
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 240 CLCNQVSFGQM--VMCDNDLCPHQWFHFSCV---------AVTNTPKGKWYCPNCRK 285
C ++ G++ V CDN C + H C+ T CP C+
Sbjct: 314 CFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 28.7 bits (64), Expect = 2.6
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 135 EQEAVETSVKHDEAVSTEKTQQSETPVAPKKRQRKK--NTEVDSEMIECSSTPLPRSSAT 192
+E ++ + K ++S+ P A +++ K VD + + L
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERD 82
Query: 193 IAVVKKPSTQSGGKKKKRKTKQQRECEKEATPPP 226
G KK+K K+++ K T PP
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPP 116
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A
{Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Length = 139
Score = 27.6 bits (61), Expect = 3.3
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 221 EATPPPDEDLAIDPN-EPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWY 279
+ P D L +PTY + + +C H CV N + K+
Sbjct: 30 KTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINA-VCTHL----GCVVPFNAAENKFI 84
Query: 280 CPNC 283
CP C
Sbjct: 85 CP-C 87
>2iub_A CORA, divalent cation transport-related protein; membrane protein,
ION transporter; 2.9A {Thermotoga maritima} SCOP:
d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Length = 363
Score = 28.5 bits (64), Expect = 3.4
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 30 VETYLDIVENLPDEIQRYLTKIRELDVLYQSYMKEIEHIASQNGNKIDQFSRKRNLLRVQ 89
V+ Y ++E + DEI E +VL + + ++ KRNL+ ++
Sbjct: 190 VDDYFVLLEKIDDEIDVL-----EEEVLERPEKETVQRT----------HQLKRNLVELR 234
Query: 90 VALIAAQEIGDEKLSIMQQVQDVIEGKTR 118
+ +E+ S+ + V +IE +T
Sbjct: 235 KTIWPLREVLS---SLYRDVPPLIEKETV 260
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A,
one-carbon metabolism, pyridoxa phosphate, structural
genomics; 1.60A {Burkholderia pseudomallei}
Length = 425
Score = 28.0 bits (63), Expect = 5.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 12 SPNMLNQAVLEAMYSVP---YVETY-----------LDIVENL 40
S N++++AVL+A SV Y E Y D VE L
Sbjct: 40 SENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEAL 82
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 27.6 bits (61), Expect = 5.3
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 277 KWYCPNCRKARSNAVRPKKQL 297
WYCPNC+K + + K+
Sbjct: 231 PWYCPNCKKHQ----QATKKF 247
>1tme_2 Theiler'S murine encephalomyelitis virus (subunit VP2); icosahedral
virus; 2.80A {Theiler} PDB: 1tmf_2 2mev_2 1mec_2
Length = 267
Score = 27.5 bits (61), Expect = 5.5
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 8/74 (10%)
Query: 192 TIAVVKKPSTQSGGKKKKRKTKQQRECEKEATPPPDEDLAIDPNEPT---YCLCNQVSFG 248
++ V P +G K + + T + + + N +
Sbjct: 125 SLLVFMAPEFYTGKGTKTGDMEPTDPFTMDTTWRAPQGAPTGYRYDSRTGFFAMNHQNQW 184
Query: 249 QMVMCDNDLCPHQW 262
Q + PHQ
Sbjct: 185 QWT-----VYPHQI 193
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 27.9 bits (61), Expect = 5.5
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 38 ENLPDEIQRYLTKIRELDVLYQSYMKEIEHIASQNGNKIDQF------SRKRNLLRVQVA 91
+ L +E + ++ + S K + I K+ F + + Q++
Sbjct: 844 QTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQIS 903
Query: 92 LIAAQEIGDEKLSIMQQVQDVIE 114
+ + ++V
Sbjct: 904 GSQNGKAEYVHPEGWKVWENVSA 926
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
Length = 447
Score = 27.6 bits (62), Expect = 5.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 12 SPNMLNQAVLEAMYSVP---YVETY-----------LDIVENL 40
S N + +AVL+A SV Y E +D+VENL
Sbjct: 53 SENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENL 95
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 26.3 bits (58), Expect = 5.8
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 275 KGKWYCPNCRK--ARSNAVRPKKQLVERLEKYNKEKQEK 311
+ CP C + +A+ K L + + + E
Sbjct: 48 SDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 27.7 bits (62), Expect = 5.9
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 36 IVENLPDEIQRYLTKIRELDVLYQSYMKE 64
V LPD I+ Y+TK + ++M+
Sbjct: 344 CVVILPDGIRNYMTKF-----VSDNWMEA 367
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 27.6 bits (60), Expect = 6.0
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 206 KKKKRKTKQQRECEKEATPPPDEDLAIDPNEPTYCLCNQVSFGQMVM-CDNDLCPH-QWF 263
+ + KQ + T DE++ + L +S+ +M + C H Q F
Sbjct: 215 LQHPKIIKQATLLYLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCF 274
Query: 264 HFSCVAVTNTPKGKWYCPNCRK 285
+ W CP C+
Sbjct: 275 DALWFLHSQLQIPTWQCPVCQI 296
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A {Homo
sapiens} PDB: 3s32_A
Length = 177
Score = 27.1 bits (59), Expect = 6.3
Identities = 8/57 (14%), Positives = 13/57 (22%), Gaps = 7/57 (12%)
Query: 235 NEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNT---PKGKWY---CPNCRK 285
+ V +C +WF + + P Y C C
Sbjct: 3 TQAGSVDEENGRQLGEVELQCGIC-TKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein
complex, electron transfer complex; HET: HEM TDS PL9 OPC
CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1
f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Length = 179
Score = 27.1 bits (60), Expect = 6.6
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 264 HFSCVAVTNTPKGKWYCPNC 283
H CV N + K+ CP C
Sbjct: 110 HLGCVVPWNAAENKFKCP-C 128
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA)
sandwich, CSGI transferase, structural genomics; HET:
MSE; 1.80A {Campylobacter jejuni}
Length = 417
Score = 27.6 bits (62), Expect = 6.8
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 14/43 (32%)
Query: 12 SPNMLNQAVLEAMYSVP---YVETY-----------LDIVENL 40
S N V+E M S+ Y E Y +D +E L
Sbjct: 33 SENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETL 75
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural
genomics; HET: PLP; 1.15A {Thermus thermophilus}
Length = 407
Score = 27.5 bits (62), Expect = 7.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 12 SPNMLNQAVLEAMYSVP---YVETY-----------LDIVENL 40
S N +++ V EA+ SV Y E Y +D VE+L
Sbjct: 31 SENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESL 73
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011,
serine hydroxymethyltransfera salmonella typhimurium.;
HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A*
3g8m_A* 1eqb_A*
Length = 420
Score = 27.2 bits (61), Expect = 7.1
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 14/43 (32%)
Query: 12 SPNMLNQAVLEAMYSVP---YVETY-----------LDIVENL 40
S N + V++A S Y E Y +D+VE L
Sbjct: 38 SENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQL 80
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A*
1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A*
2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A*
2vgt_A* 2vgv_A* 2vgw_A* ...
Length = 405
Score = 27.1 bits (61), Expect = 7.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 14/43 (32%)
Query: 12 SPNMLNQAVLEAMYSVP---YVETY-----------LDIVENL 40
S N +++AV+EA SV Y E Y +DIVE L
Sbjct: 31 SENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEEL 73
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 8.1
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 280 CPNCRKARSNAVR 292
CP C+ V
Sbjct: 24 CPECKVYPPKIVE 36
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein
complex, structural protein/DNA complex; 1.91A
{Sterkiella nova} SCOP: b.40.4.3
Length = 385
Score = 27.3 bits (59), Expect = 8.8
Identities = 32/179 (17%), Positives = 54/179 (30%), Gaps = 17/179 (9%)
Query: 65 IEHIASQNGNKIDQFSRKR-NLLRVQVALIAAQEIGDEKLSIMQQVQDVIE--------G 115
I ++ G++ FS K N +++A I QE G + L+ D + G
Sbjct: 189 IVKASASKGDEFSDFSFKEGNTATLKIADIFVQEKGKDALNKAADHTDGAKVKGGAKGKG 248
Query: 116 KTRQIDGIFYNLPSVTSRREQEAVETSVKHDEAVSTEKTQQSETPVAPKKRQRKKNTEVD 175
K L + V SV + K + +TP + K++
Sbjct: 249 KAAAKAAKGKKLSAKKGDSSAADVRKSVDKIVKYTPSKGSRKDTPQKSQAPAAGKSSAKK 308
Query: 176 SEMIECSSTPLP--------RSSATIAVVKKPSTQSGGKKKKRKTKQQRECEKEATPPP 226
S P P T+A K KK + + + K +
Sbjct: 309 GGKKAVPSAPSPSGKKSALTTDKMTMAQFVKYLDWHEKKKGGKVSSGGKVLGKRSAGKA 367
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 26.1 bits (57), Expect = 9.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 199 PSTQSGGKKKKRKTKQQRECEKEATPPPDED 229
P + G K +R+ K + E EK ++
Sbjct: 1 PKNKGKGGKNRRRGKNENESEKRELVFKEDG 31
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
[4Fe-4S] clusters, iron-SULF clusters, reduction
potential; 1.65A {Escherichia coli}
Length = 85
Score = 25.5 bits (56), Expect = 9.6
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 217 ECEKEATPPPDEDLAIDPNEPTYC 240
EC EA D I+ ++ T C
Sbjct: 17 ECPNEAISMGDHIYEINSDKCTEC 40
>2w2r_A Matrix protein; viral assembly, viral morphogenesis, VSV, polymer,
viral protein; HET: MSE; 1.83A {Vesicular stomatitis
virus}
Length = 228
Score = 26.7 bits (58), Expect = 9.8
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 211 KTKQQRECEKEATPPPDEDLAIDPNEPTYCLCNQVSFG--QMVMCDNDLCPHQWFHFSCV 268
+K ++ +K PPP ++ + +P+ L + FG M + D D ++ F F
Sbjct: 10 SSKSHKKSKKMGLPPPYDESSPMETQPSAPL-SNDFFGMEDMDLYDKDSLRYEKFRFMLK 68
Query: 269 AV--TNTP 274
+N P
Sbjct: 69 MTVRSNKP 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.127 0.362
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,555,891
Number of extensions: 264517
Number of successful extensions: 1044
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 115
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.5 bits)