RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16463
(317 letters)
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 97.7 bits (243), Expect = 2e-26
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 222 ATPPPDEDLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCP 281
+ + AIDPNEPTYCLCNQVS+G+M+ CDN+ CP +WFHFSCV++T PKGKWYCP
Sbjct: 1 GSSGSSGEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCP 60
Query: 282 NCRKA 286
CR
Sbjct: 61 KCRGD 65
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 88.4 bits (219), Expect = 3e-23
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 236 EPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRK 285
EPTYCLC+QVS+G+M+ CDN C +WFHF+CV +T P+GKW+CP C +
Sbjct: 1 EPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 50
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 74.4 bits (182), Expect = 8e-18
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 226 PDEDLAIDPNEPTYCLCNQ-VSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKG-------K 277
+ P C+C + M+ C++ C W H CV + + P
Sbjct: 5 SSGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHV-WQHVGCVILPDKPMDGNPPLPES 63
Query: 278 WYCPNCRKAR 287
+YC CR
Sbjct: 64 FYCEICRLTS 73
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 58.9 bits (142), Expect = 3e-12
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 228 EDLAIDPNEPTYCLCNQVSFG-QMVMCDNDLCPHQWFHFSCVAVTNT-------PKGKWY 279
E DPN YC+C Q M+ CD C WFH CV ++ +
Sbjct: 8 ECEVYDPNA-LYCICRQPHNNRFMICCDR--CEE-WFHGDCVGISEARGRLLERNGEDYI 63
Query: 280 CPNCR 284
CPNC
Sbjct: 64 CPNCT 68
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 55.8 bits (134), Expect = 4e-11
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 235 NEPTYCLCNQVS--FGQMVMCDNDLCPHQWFHFSCVAVTNT--PKGKWYCPNCRKARSNA 290
N C C +M+ CD C W H C+ + N K+ C C + +
Sbjct: 14 NWKVDCKCGTKDDDGERMLACDG--CG-VWHHTRCIGINNADALPSKFLCFRCIELSGPS 70
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 54.3 bits (130), Expect = 2e-10
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 236 EPTYCLCNQVSF--GQMVMCDNDLCPHQWFHFSCVAVTNTP---KGKWYCPNCRKARSNA 290
P YCLC Q M+ C WFH SCV + ++CP+C +
Sbjct: 11 VPVYCLCRQPYNVNHFMIECGLCQD---WFHGSCVGIEEENAVDIDIYHCPDCEAVFGPS 67
Query: 291 VRPKK 295
+
Sbjct: 68 IMKNW 72
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 51.1 bits (122), Expect = 2e-09
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 233 DPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCR 284
D + +C G+++ CD CP +H C+ + P G+W CP C
Sbjct: 6 DHHMEFCRVCKDG--GELLCCDT--CPS-SYHIHCLNPPLPEIPNGEWLCPRCT 54
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 48.5 bits (115), Expect = 2e-08
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 235 NEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRK 285
+ T C +C + G +VMC+ C FH C A+ + P +W C C
Sbjct: 5 DSATICRVCQKP--GDLVMCNQ--CEF-CFHLDCHLPALQDVPGEEWSCSLCHV 53
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 47.3 bits (112), Expect = 3e-08
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 240 CLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNT---PKGKWYCPNCRK 285
C + + + CD C WFH CV +T ++ CP+C
Sbjct: 12 CGESYAADEFWICCDL--CEM-WFHGKCVKITPARAEHIKQYKCPSCSN 57
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 43.8 bits (103), Expect = 5e-07
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 248 GQMVMCDNDLCPHQWFHFSCV--AVTNTPKGKWYCPNCRKA 286
++++CD C + FH C+ A+ P G+W CP C+ A
Sbjct: 13 DKLILCDE--CN-KAFHLFCLRPALYEVPDGEWQCPACQPA 50
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 43.7 bits (102), Expect = 1e-06
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 227 DEDLAIDPNEPTYCLCNQVSF---GQMVMCDNDLCPHQWFHFSCV------AVTNTPKGK 277
+D A++ +C Q++ Q+V C C +H C N P+
Sbjct: 8 ADDFAMEMGL-ACVVCRQMTVASGNQLVECQE--CH-NLYHQDCHKPQVTDKEVNDPRLV 63
Query: 278 WYCPNCRKARSNAVRPKKQ 296
WYC C + + ++
Sbjct: 64 WYCARCTRQMKRMAQKNQK 82
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 29.4 bits (65), Expect = 0.088
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 233 DPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRK 285
D + P +CN+ + + H SC++ T C C
Sbjct: 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 28.7 bits (63), Expect = 0.29
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 242 CNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKARSNAVRPKKQLVERL 301
+ V + D P+ + ++ + + PK +V+ +
Sbjct: 46 GEYKDKLKCVKLNTDESPNVASEYGIRSIPTI---MVFKGGKKCETIIGAVPKATIVQTV 102
Query: 302 EKY 304
EKY
Sbjct: 103 EKY 105
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506
{Methylobacillus flagellatus [TaxId: 405]}
Length = 139
Score = 28.3 bits (62), Expect = 0.61
Identities = 3/62 (4%), Positives = 10/62 (16%)
Query: 230 LAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKARSN 289
+ + P +C + + + + N
Sbjct: 27 HVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLASLGN 86
Query: 290 AV 291
Sbjct: 87 MT 88
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 27.7 bits (61), Expect = 0.71
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 258 CPHQWFHFSCVAVTNTPKGKWYCPNCRKA-RSNAVRPKKQLVERLEKYNKEKQ 309
C H + F + + N KG CP C+ +++ + + +E+ K
Sbjct: 39 CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIIC 91
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 27.2 bits (59), Expect = 1.1
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 237 PTYCLCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKARSNAVRPKKQ 296
P + G++ + + + + P ++ RK PK
Sbjct: 37 PVIDELAKEYSGKIAVYKLNTDEAPGIATQY-NIRSIPTVLFFKNGERKESIIGAVPKST 95
Query: 297 LVERLEKY 304
L + +EKY
Sbjct: 96 LTDSIEKY 103
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 27.9 bits (61), Expect = 1.7
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 36 IVENLPDEIQRYLTKIRELDVLYQSYMKEIEHI 68
V P +RYL+ + L+ + KE E +
Sbjct: 289 FVAIFPSFGERYLSTV-----LFDATRKEAEAM 316
>d1tn3a_ d.169.1.1 (A:) Tetranectin {Human (Homo sapiens) [TaxId:
9606]}
Length = 137
Score = 27.0 bits (58), Expect = 1.7
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 249 QMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKARS 288
+ + P +C ++ GKW+ CR
Sbjct: 90 KNWETEITAQPDGGKTENCAVLSGAANGKWFDKRCRDQLP 129
>d1d9ca_ a.26.1.3 (A:) Interferon-gamma {Cow (Bos taurus) [TaxId:
9913]}
Length = 121
Score = 25.8 bits (57), Expect = 4.4
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 30 VETYLDIVENLPD--EIQRYLTKIRE 53
V Y + ENL D IQR + I++
Sbjct: 50 VSFYFKLFENLKDNQVIQRSMDIIKQ 75
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 151
Score = 25.6 bits (55), Expect = 5.9
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 6/85 (7%)
Query: 229 DLAIDPNEPTYCLCNQVSFGQMVMCDNDLCPHQWFHFS------CVAVTNTPKGKWYCPN 282
D A P+E L + PH++ A+ +
Sbjct: 22 DYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVY 81
Query: 283 CRKARSNAVRPKKQLVERLEKYNKE 307
K + + L+ KE
Sbjct: 82 DAFEEKKNGISGKMIWDSLKSLGKE 106
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 24.5 bits (53), Expect = 6.3
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 228 EDLAIDPNEPTYC-LCNQVSFGQMVMCDNDLCPHQWFHFSCVAVTNTPKGKWYCPNCRKA 286
D + C +C + + C H F C+ G YCP+CR
Sbjct: 14 VDFPAHFVKSISCQICEHILADPVETS----CKH-LFCRICILRCLKVMGS-YCPSCRYP 67
Query: 287 --RSNAVRPKKQLVERL 301
++ P K + L
Sbjct: 68 CFPTDLESPVKSFLNIL 84
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 56
Score = 23.6 bits (51), Expect = 9.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 282 NCRKARSNAVRPKKQ 296
CR+ S +R KK+
Sbjct: 35 KCRRCHSTNLRLKKK 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.127 0.362
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,117,461
Number of extensions: 52802
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 37
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.5 bits)