BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16466
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 2)
          Length = 439

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 42  LENDLARLRDPLIPPYRGYEFQVPSDL--------SYKQPSSSINKFK---EQIKMILSK 90
           ++  L R RDP  P ++  E+Q P  L        S   P ++++ FK   EQI  + +K
Sbjct: 188 IDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAK 247

Query: 91  QSHGAN 96
                N
Sbjct: 248 SKEDGN 253


>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 1)
 pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 1)
          Length = 439

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 42  LENDLARLRDPLIPPYRGYEFQVPSDL--------SYKQPSSSINKFK---EQIKMILSK 90
           ++  L R RDP  P ++  E+Q P  L        S   P ++++ FK   EQI  + +K
Sbjct: 188 IDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAK 247

Query: 91  QSHGAN 96
                N
Sbjct: 248 SKEDGN 253


>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
 pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
          Length = 436

 Score = 28.1 bits (61), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 42  LENDLARLRDPLIPPYRGYEFQVPSDL--------SYKQPSSSINKFK---EQIKMILSK 90
           ++  L R RDP  P ++  E+Q P  L        S   P ++++ FK   EQI  + +K
Sbjct: 185 IDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALKAK 244

Query: 91  QSHGAN 96
                N
Sbjct: 245 SKEDGN 250


>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
 pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
          Length = 900

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 17/97 (17%)

Query: 10 RDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPLIPPYRGYEFQVPSDLS 69
          +DR+    L    + + +  + Y  L+NEC  LE   A  +DP  PP       V   L 
Sbjct: 10 KDREAAEGLGSHERAIKYLNQDYETLRNEC--LEAG-ALFQDPAFPP-------VSHSLG 59

Query: 70 YKQ--PSSSIN---KFKEQIKMILSKQ--SHGANKND 99
          +K+  P+SS     K+K   +++ + Q    GA + D
Sbjct: 60 FKELGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTD 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,103,255
Number of Sequences: 62578
Number of extensions: 113316
Number of successful extensions: 187
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)