BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16466
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NE86|MCU_HUMAN Calcium uniporter protein, mitochondrial OS=Homo sapiens GN=MCU
           PE=1 SV=1
          Length = 351

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 35/51 (68%)

Query: 3   EYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPL 53
           EY  P+ RDRQ+L+  HK AKK  F LE+YN LK+   + E DL RLRDPL
Sbjct: 288 EYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRDPL 338


>sp|Q3UMR5|MCU_MOUSE Calcium uniporter protein, mitochondrial OS=Mus musculus GN=Mcu
           PE=2 SV=2
          Length = 350

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 35/51 (68%)

Query: 3   EYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPL 53
           EY  P+ RDRQ+L+  HK AKK  F LE+YN LK+   + E DL RLRDPL
Sbjct: 287 EYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRDPL 337


>sp|Q08BI9|MCU_DANRE Calcium uniporter protein, mitochondrial OS=Danio rerio GN=mcu PE=2
           SV=1
          Length = 376

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 35/51 (68%)

Query: 3   EYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPL 53
           EY  PD RDRQ+L+  H+ AK+  F +E+YN LK+   + E DL RLRDPL
Sbjct: 312 EYLYPDARDRQYLLFFHRGAKRTRFDIEKYNKLKDAIAEAELDLKRLRDPL 362


>sp|Q9NWR8|C109B_HUMAN Coiled-coil domain-containing protein 109B OS=Homo sapiens
           GN=CCDC109B PE=2 SV=2
          Length = 336

 Score = 37.7 bits (86), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 3   EYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPL 53
           +Y    V+ RQFL   HK++K+  F ++QYN LK +  K +  L + R  L
Sbjct: 273 DYTYSAVKSRQFLQFFHKKSKQQHFDVQQYNKLKEDLAKAKESLKQARHSL 323


>sp|Q810S1|C109B_MOUSE Coiled-coil domain-containing protein 109B OS=Mus musculus
           GN=Ccdc109b PE=2 SV=1
          Length = 345

 Score = 36.6 bits (83), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 4   YYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPLIPPYRGYE 61
           Y    +R RQFL   HK++++  F +EQYN LK +  +    L  +R  L    +G E
Sbjct: 283 YTYSSLRSRQFLQFFHKKSQRRCFDVEQYNKLKEDLAEATESLESVRRSLRLRIQGEE 340


>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
           thaliana GN=SMC4 PE=2 SV=1
          Length = 1241

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 23  KKVGFPLEQYNCLKNECGKLENDLARLR---DPLIPPYRGYEFQVPSDLSYKQP-SSSIN 78
           +KVG  + QY   +NE   LE +LA+ +   + L   +   E Q+ S  +  QP +  I+
Sbjct: 740 EKVGNAVRQYRAAENEVSGLEMELAKSQREIESLNSEHNYLEKQLASLEAASQPKTDEID 799

Query: 79  KFKEQIKMILSKQ 91
           + KE +K I+SK+
Sbjct: 800 RLKE-LKKIISKE 811


>sp|Q1ZXL0|Y5795_DICDI PH domain-containing protein DDB_G0275795 OS=Dictyostelium
           discoideum GN=DDB_G0275795 PE=4 SV=1
          Length = 808

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 53  LIPPYRGYEFQV--PSDLSYKQPSSSINKFKEQIKMILSKQSHGANKN 98
           L  P R Y FQV  PSDL+Y   +  + +FK+  + + + Q  GAN N
Sbjct: 187 LATPSRVYVFQVFKPSDLTY--WTEGLKEFKKYYQSLQNSQKFGANAN 232


>sp|Q6F0E5|FTSH_MESFL ATP-dependent zinc metalloprotease FtsH OS=Mesoplasma florum
           (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1)
           GN=ftsH PE=3 SV=1
          Length = 650

 Score = 29.6 bits (65), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 1   MMEYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECG----KLENDL 46
           +++  LPD+++R+ ++ LH + KK+   ++ Y   +   G    +LEN L
Sbjct: 339 VIQVSLPDIKERKAILELHAKGKKIDGSVDWYRVAERTPGFSGAQLENVL 388


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,963,859
Number of Sequences: 539616
Number of extensions: 1446189
Number of successful extensions: 3256
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3249
Number of HSP's gapped (non-prelim): 11
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)