Query psy16466
Match_columns 101
No_of_seqs 67 out of 69
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 22:03:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2966|consensus 99.5 7.7E-15 1.7E-19 120.3 3.0 58 2-66 261-318 (325)
2 PF04678 DUF607: Protein of un 98.5 7.6E-08 1.6E-12 71.6 2.8 35 2-36 146-180 (180)
3 PF05713 MobC: Bacterial mobil 58.0 28 0.00061 20.6 4.1 27 25-51 22-48 (48)
4 PF15079 DUF4546: Domain of un 48.4 12 0.00026 29.7 1.7 14 34-47 51-64 (205)
5 TIGR01004 PulS_OutS lipoprotei 48.0 35 0.00077 25.3 4.0 52 2-53 54-106 (128)
6 PF08285 DPM3: Dolichol-phosph 47.2 19 0.00041 24.8 2.4 19 30-48 68-86 (91)
7 COG4064 MtrG Tetrahydromethano 43.1 28 0.00061 24.0 2.6 28 21-48 6-33 (75)
8 PF12535 Nudix_N: Hydrolase of 41.5 8.3 0.00018 24.6 -0.1 19 24-42 23-41 (58)
9 KOG2712|consensus 40.5 31 0.00068 25.1 2.7 24 26-49 82-105 (108)
10 PF04201 TPD52: Tumour protein 39.6 35 0.00075 26.3 3.0 30 25-54 24-53 (162)
11 PF13767 DUF4168: Domain of un 37.1 29 0.00063 22.4 2.0 25 21-46 50-74 (78)
12 PF06305 DUF1049: Protein of u 35.5 36 0.00079 20.7 2.1 19 32-50 50-68 (68)
13 cd04766 HTH_HspR Helix-Turn-He 33.0 31 0.00067 22.5 1.6 40 15-54 47-89 (91)
14 KOG0862|consensus 30.8 73 0.0016 25.6 3.6 36 63-98 13-51 (216)
15 PF04977 DivIC: Septum formati 30.6 51 0.0011 20.2 2.2 21 32-52 33-54 (80)
16 PF06698 DUF1192: Protein of u 30.5 51 0.0011 21.4 2.2 27 27-53 16-44 (59)
17 PF04912 Dynamitin: Dynamitin 29.2 51 0.0011 27.1 2.6 24 28-51 92-115 (388)
18 PF13422 DUF4110: Domain of un 28.7 32 0.00069 24.0 1.2 29 20-48 44-74 (96)
19 smart00040 CSF2 Granulocyte-ma 27.8 26 0.00057 26.0 0.6 65 25-89 45-115 (121)
20 KOG4098|consensus 27.3 63 0.0014 24.6 2.6 24 28-51 20-43 (140)
21 COG1102 Cmk Cytidylate kinase 27.2 53 0.0012 25.8 2.2 30 16-45 33-62 (179)
22 PF09006 Surfac_D-trimer: Lung 26.9 69 0.0015 20.2 2.3 22 33-54 2-23 (46)
23 PRK11020 hypothetical protein; 26.1 70 0.0015 23.7 2.6 61 22-83 23-88 (118)
24 cd00040 CSF2 Granulocyte Macro 26.1 28 0.00061 25.8 0.5 65 25-89 45-115 (121)
25 PF06569 DUF1128: Protein of u 26.0 75 0.0016 21.5 2.5 27 24-50 30-70 (71)
26 PF11461 RILP: Rab interacting 25.8 71 0.0015 20.9 2.3 25 30-54 10-34 (60)
27 PF12022 DUF3510: Domain of un 25.7 74 0.0016 22.5 2.6 22 31-52 78-99 (125)
28 PF09862 DUF2089: Protein of u 25.2 94 0.002 22.4 3.1 19 4-27 61-79 (113)
29 PF08663 HalX: HalX domain; I 24.0 81 0.0017 20.8 2.4 26 28-53 34-59 (71)
30 PF08802 CytB6-F_Fe-S: Cytochr 23.7 58 0.0013 19.7 1.5 14 6-19 3-16 (39)
31 PF07443 HARP: HepA-related pr 23.1 37 0.0008 21.8 0.6 21 21-41 26-46 (55)
32 PF04210 MtrG: Tetrahydrometha 22.8 90 0.002 21.2 2.4 23 26-48 8-30 (70)
33 TIGR01837 PHA_granule_1 poly(h 22.7 91 0.002 21.9 2.6 22 30-51 96-117 (118)
34 PF07334 IFP_35_N: Interferon- 22.4 67 0.0015 21.9 1.8 23 34-56 11-33 (76)
35 TIGR03782 Bac_Flav_CT_J Bacter 22.0 62 0.0013 27.4 1.9 34 17-54 89-122 (322)
36 PF01920 Prefoldin_2: Prefoldi 20.9 1.2E+02 0.0025 19.5 2.7 21 30-50 5-25 (106)
37 PF12652 CotJB: CotJB protein; 20.8 1.3E+02 0.0028 20.2 2.9 26 29-54 32-57 (78)
No 1
>KOG2966|consensus
Probab=99.50 E-value=7.7e-15 Score=120.25 Aligned_cols=58 Identities=34% Similarity=0.446 Sum_probs=56.2
Q ss_pred cccCcchhhHHHHHHHHHhhhhccCCChhhhhhhhhHHHHHHHHHHhhhCCCCCCCCCccccccC
Q psy16466 2 MEYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPLIPPYRGYEFQVPS 66 (101)
Q Consensus 2 QdY~Yp~ardRq~L~~FHK~Akk~~FDVe~YN~LKeelA~vEedLkRLRdPL~l~~~~~~~~~p~ 66 (101)
|||+||.+++|+|+.+|||.+++++|||++||+||+..+....+++|.|||+. +|+|.
T Consensus 261 qepsy~~~~~r~f~~kq~Kl~k~~~FDierYneLk~~~~~~~~~~~~~~~~l~-------~~~~v 318 (325)
T KOG2966|consen 261 QEPSYEGFYKRRFLTKQRKLMKKQDFDIERYNELKKLFAPAPCSLKRCRDPLF-------QHLPV 318 (325)
T ss_pred cCcccHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhCccccccccccHH-------hcCch
Confidence 89999999999999999999999999999999999999999999999999999 77776
No 2
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=98.49 E-value=7.6e-08 Score=71.57 Aligned_cols=35 Identities=46% Similarity=0.618 Sum_probs=34.0
Q ss_pred cccCcchhhHHHHHHHHHhhhhccCCChhhhhhhh
Q psy16466 2 MEYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLK 36 (101)
Q Consensus 2 QdY~Yp~ardRq~L~~FHK~Akk~~FDVe~YN~LK 36 (101)
+||.|+++.+|.++.++||.+++++||+++||+||
T Consensus 146 re~sy~~~~~~~~~~~~~kl~~~~~fD~~~y~~L~ 180 (180)
T PF04678_consen 146 REYSYESVFQRRFLRRQHKLYAKHGFDIERYNELK 180 (180)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHhcC
Confidence 69999999999999999999999999999999996
No 3
>PF05713 MobC: Bacterial mobilisation protein (MobC); InterPro: IPR008687 This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region []. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localised DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA [].
Probab=58.02 E-value=28 Score=20.60 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.1
Q ss_pred cCCChhhhhhhhhHHHHHHHHHHhhhC
Q psy16466 25 VGFPLEQYNCLKNECGKLENDLARLRD 51 (101)
Q Consensus 25 ~~FDVe~YN~LKeelA~vEedLkRLRd 51 (101)
.+++...+=++.+++.++...|++|||
T Consensus 22 ~~~~~~~~~~~~~~L~~i~~~L~~l~~ 48 (48)
T PF05713_consen 22 GQVDEQEYEKLIEELREIEKELKELRD 48 (48)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHC
Confidence 567777777788999999999999986
No 4
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=48.36 E-value=12 Score=29.73 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHHH
Q psy16466 34 CLKNECGKLENDLA 47 (101)
Q Consensus 34 ~LKeelA~vEedLk 47 (101)
+||.++.+|.|+|+
T Consensus 51 eLkNeLREVREELk 64 (205)
T PF15079_consen 51 ELKNELREVREELK 64 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666665
No 5
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=48.01 E-value=35 Score=25.35 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=40.9
Q ss_pred cccCcchhhHHH-HHHHHHhhhhccCCChhhhhhhhhHHHHHHHHHHhhhCCC
Q psy16466 2 MEYYLPDVRDRQ-FLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPL 53 (101)
Q Consensus 2 QdY~Yp~ardRq-~L~~FHK~Akk~~FDVe~YN~LKeelA~vEedLkRLRdPL 53 (101)
++.-|.++-|++ -....=+-|+.+|.|+..||.|+..-.+.=.+|++..-|-
T Consensus 54 ~~C~rsdiPd~~~I~raai~~A~~~gWd~~~y~~l~~~se~~Yq~L~~d~~p~ 106 (128)
T TIGR01004 54 MQCNRSDLPDDGSILKTANNVAIGKGWDSGRQEDLPQHSDDLYQGLLKDSTPE 106 (128)
T ss_pred hcCCcccCCcHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHhccCCcc
Confidence 356678888888 7777788899999999999988877777777777655554
No 6
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=47.24 E-value=19 Score=24.81 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.8
Q ss_pred hhhhhhhhHHHHHHHHHHh
Q psy16466 30 EQYNCLKNECGKLENDLAR 48 (101)
Q Consensus 30 e~YN~LKeelA~vEedLkR 48 (101)
|.|-+|..|+.++++||++
T Consensus 68 eA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 68 EAAKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999986
No 7
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=43.08 E-value=28 Score=23.95 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.5
Q ss_pred hhhccCCChhhhhhhhhHHHHHHHHHHh
Q psy16466 21 RAKKVGFPLEQYNCLKNECGKLENDLAR 48 (101)
Q Consensus 21 ~Akk~~FDVe~YN~LKeelA~vEedLkR 48 (101)
++.+.-.|-+.||+++.++.++|+.+.-
T Consensus 6 k~P~v~v~~~dfne~~kRLdeieekvef 33 (75)
T COG4064 6 KVPKVVVDPDDFNEIHKRLDEIEEKVEF 33 (75)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHh
Confidence 3566778899999999999999998753
No 8
>PF12535 Nudix_N: Hydrolase of X-linked nucleoside diphosphate N terminal ; PDB: 3Q1P_B 3Q4I_B.
Probab=41.49 E-value=8.3 Score=24.57 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=14.1
Q ss_pred ccCCChhhhhhhhhHHHHH
Q psy16466 24 KVGFPLEQYNCLKNECGKL 42 (101)
Q Consensus 24 k~~FDVe~YN~LKeelA~v 42 (101)
+..||+|+|.+|++=.+++
T Consensus 23 kd~yD~ERy~~lr~ia~el 41 (58)
T PF12535_consen 23 KDPYDRERYEELREIAAEL 41 (58)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHH
Confidence 5679999999998766654
No 9
>KOG2712|consensus
Probab=40.51 E-value=31 Score=25.10 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.7
Q ss_pred CCChhhhhhhhhHHHHHHHHHHhh
Q psy16466 26 GFPLEQYNCLKNECGKLENDLARL 49 (101)
Q Consensus 26 ~FDVe~YN~LKeelA~vEedLkRL 49 (101)
.+.+++||.||+-+.+++..|++|
T Consensus 82 SLs~~qW~~Lk~~~~eId~Al~~l 105 (108)
T KOG2712|consen 82 SLSLEQWSKLKEHIEEIDKALRKL 105 (108)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999987
No 10
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=39.64 E-value=35 Score=26.25 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=25.4
Q ss_pred cCCChhhhhhhhhHHHHHHHHHHhhhCCCC
Q psy16466 25 VGFPLEQYNCLKNECGKLENDLARLRDPLI 54 (101)
Q Consensus 25 ~~FDVe~YN~LKeelA~vEedLkRLRdPL~ 54 (101)
..+.-+.--+|+.+|+++|+++.-||.-|.
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~ 53 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLA 53 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667788999999999999999997654
No 11
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=37.11 E-value=29 Score=22.35 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=17.3
Q ss_pred hhhccCCChhhhhhhhhHHHHHHHHH
Q psy16466 21 RAKKVGFPLEQYNCLKNECGKLENDL 46 (101)
Q Consensus 21 ~Akk~~FDVe~YN~LKeelA~vEedL 46 (101)
.-...|++|++||++-..+ +-..+|
T Consensus 50 ~I~~~GLtv~~fN~I~~~~-q~Dp~L 74 (78)
T PF13767_consen 50 AIEENGLTVERFNEITQAA-QSDPEL 74 (78)
T ss_pred HHHHcCCCHHHHHHHHHHH-HcCHHH
Confidence 3467899999999995543 444444
No 12
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.49 E-value=36 Score=20.71 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q psy16466 32 YNCLKNECGKLENDLARLR 50 (101)
Q Consensus 32 YN~LKeelA~vEedLkRLR 50 (101)
.-+++.+++++|.++..||
T Consensus 50 ~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4466778888888887776
No 13
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.02 E-value=31 Score=22.48 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=28.7
Q ss_pred HHHHHhhhhccCCChh---hhhhhhhHHHHHHHHHHhhhCCCC
Q psy16466 15 LIHLHKRAKKVGFPLE---QYNCLKNECGKLENDLARLRDPLI 54 (101)
Q Consensus 15 L~~FHK~Akk~~FDVe---~YN~LKeelA~vEedLkRLRdPL~ 54 (101)
|.+...-....||+++ .+=.|++++..++.+|.+||.-|+
T Consensus 47 l~~i~~L~~d~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 47 LRRIQRLTQELGVNLAGVKRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444777654 566799999999999999987664
No 14
>KOG0862|consensus
Probab=30.76 E-value=73 Score=25.56 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=25.6
Q ss_pred cccC--ccc-ccccCchhHhhHHHHHHHHHhhcCCCCCC
Q psy16466 63 QVPS--DLS-YKQPSSSINKFKEQIKMILSKQSHGANKN 98 (101)
Q Consensus 63 ~~p~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (101)
.||+ ..+ .-++..++.+.|.|+|+|..+-..++-.+
T Consensus 13 GLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r 51 (216)
T KOG0862|consen 13 GLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTR 51 (216)
T ss_pred CcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcc
Confidence 4677 344 44455566888999999999887775444
No 15
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.56 E-value=51 Score=20.22 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=11.2
Q ss_pred hhhhhhHHHHHHHHHHhh-hCC
Q psy16466 32 YNCLKNECGKLENDLARL-RDP 52 (101)
Q Consensus 32 YN~LKeelA~vEedLkRL-RdP 52 (101)
..+++.+..+++.++++| .||
T Consensus 33 i~~l~~e~~~L~~ei~~l~~~~ 54 (80)
T PF04977_consen 33 IEELKKENEELKEEIERLKNDP 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHhcCCH
Confidence 344555555555666666 444
No 16
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.54 E-value=51 Score=21.38 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=20.8
Q ss_pred CChhhh--hhhhhHHHHHHHHHHhhhCCC
Q psy16466 27 FPLEQY--NCLKNECGKLENDLARLRDPL 53 (101)
Q Consensus 27 FDVe~Y--N~LKeelA~vEedLkRLRdPL 53 (101)
=|+..| .+|.++++.++.++.|++.-+
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 489999999999999998543
No 17
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.17 E-value=51 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.9
Q ss_pred ChhhhhhhhhHHHHHHHHHHhhhC
Q psy16466 28 PLEQYNCLKNECGKLENDLARLRD 51 (101)
Q Consensus 28 DVe~YN~LKeelA~vEedLkRLRd 51 (101)
..++|++|+.|++++++++..+..
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~~~ 115 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKRKA 115 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357999999999999999998753
No 18
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=28.71 E-value=32 Score=24.01 Aligned_cols=29 Identities=38% Similarity=0.410 Sum_probs=22.6
Q ss_pred hhhhccCCCh--hhhhhhhhHHHHHHHHHHh
Q psy16466 20 KRAKKVGFPL--EQYNCLKNECGKLENDLAR 48 (101)
Q Consensus 20 K~Akk~~FDV--e~YN~LKeelA~vEedLkR 48 (101)
|-.+|.+||+ ++|.++|..|.++|.-+..
T Consensus 44 KeLrk~aF~lAe~Ry~E~k~~l~~le~~~ee 74 (96)
T PF13422_consen 44 KELRKDAFDLAEERYWELKPELDELEDLEEE 74 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888988 5799999999888765543
No 19
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=27.75 E-value=26 Score=25.96 Aligned_cols=65 Identities=26% Similarity=0.397 Sum_probs=48.2
Q ss_pred cCCChhhhhhhhhHHHH----HHHHHHhhhCCCCCCCCCccccccCc--ccccccCchhHhhHHHHHHHHH
Q psy16466 25 VGFPLEQYNCLKNECGK----LENDLARLRDPLIPPYRGYEFQVPSD--LSYKQPSSSINKFKEQIKMILS 89 (101)
Q Consensus 25 ~~FDVe~YN~LKeelA~----vEedLkRLRdPL~l~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~ 89 (101)
.-||.++=-.|.-+|.. +..+|-+|+.||.|.-.-|..|-|.+ .+-.-+.--+..|++-+|+.|-
T Consensus 45 e~Fd~qeptClQtRL~LYkqGLrGslt~Lkg~LtmmA~hYkq~CppTpEt~C~Tq~itfksFk~nLK~FLf 115 (121)
T smart00040 45 EMFDLQEPTCLQTRLKLYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCETQIITFKSFKENLKDFLF 115 (121)
T ss_pred hccCCCCCcHHHHHHHHHHhhccccHHHhhcHHHHHHHHHHhcCCCCCCCcccceeeeHHHHHHHHHHHHh
Confidence 35888877777777765 45677899999999999999999994 4444444445666777777663
No 20
>KOG4098|consensus
Probab=27.34 E-value=63 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=19.7
Q ss_pred ChhhhhhhhhHHHHHHHHHHhhhC
Q psy16466 28 PLEQYNCLKNECGKLENDLARLRD 51 (101)
Q Consensus 28 DVe~YN~LKeelA~vEedLkRLRd 51 (101)
=+.+||.|+.++.++-..+-+|-.
T Consensus 20 v~a~yn~~r~el~~ia~ki~~LE~ 43 (140)
T KOG4098|consen 20 VVAKYNALRSELQQIASKITDLEM 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999888887777763
No 21
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=27.21 E-value=53 Score=25.77 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=22.9
Q ss_pred HHHHhhhhccCCChhhhhhhhhHHHHHHHH
Q psy16466 16 IHLHKRAKKVGFPLEQYNCLKNECGKLEND 45 (101)
Q Consensus 16 ~~FHK~Akk~~FDVe~YN~LKeelA~vEed 45 (101)
.+|+..|++.+.|++.+|++-|+=-++-.+
T Consensus 33 ~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~ 62 (179)
T COG1102 33 TIFREMARERGMSLEEFSRYAEEDPEIDKE 62 (179)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcCchhhHH
Confidence 469999999999999999976653333333
No 22
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.87 E-value=69 Score=20.16 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=18.8
Q ss_pred hhhhhHHHHHHHHHHhhhCCCC
Q psy16466 33 NCLKNECGKLENDLARLRDPLI 54 (101)
Q Consensus 33 N~LKeelA~vEedLkRLRdPL~ 54 (101)
|.||.++..++..|++|...+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999986553
No 23
>PRK11020 hypothetical protein; Provisional
Probab=26.09 E-value=70 Score=23.67 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=39.6
Q ss_pred hhccCCChhhhhhhhhHHHHHHHHHHhhhCCCCCC--CCCc-cccccC--cccccccCchhHhhHHH
Q psy16466 22 AKKVGFPLEQYNCLKNECGKLENDLARLRDPLIPP--YRGY-EFQVPS--DLSYKQPSSSINKFKEQ 83 (101)
Q Consensus 22 Akk~~FDVe~YN~LKeelA~vEedLkRLRdPL~l~--~~~~-~~~~p~--~~~~~~~~~~~~~~~~~ 83 (101)
|-..+=|.+.|-++.+|++.++.++.||+.--.-. -.|+ ...+|. -++..|+... -++|+-
T Consensus 23 aa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~EQADM-GkLKKS 88 (118)
T PRK11020 23 AASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKEQADM-GKLKKS 88 (118)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHHHHhH-HHHhhc
Confidence 44667799999999999999999999998543211 1222 234555 3666665544 444443
No 24
>cd00040 CSF2 Granulocyte Macrophage Colony Stimulating Factor (GM-CSF) is a member of the large family of polypeptide growth factors called cytokines. It stimulates a wide variety of hematopoietic and nonhematopoietic cell types via binding to members of the cytokine receptor family, mainly the GM-CSF receptor.
Probab=26.09 E-value=28 Score=25.81 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=47.6
Q ss_pred cCCChhhhhhhhhHHHH----HHHHHHhhhCCCCCCCCCccccccCc--ccccccCchhHhhHHHHHHHHH
Q psy16466 25 VGFPLEQYNCLKNECGK----LENDLARLRDPLIPPYRGYEFQVPSD--LSYKQPSSSINKFKEQIKMILS 89 (101)
Q Consensus 25 ~~FDVe~YN~LKeelA~----vEedLkRLRdPL~l~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~ 89 (101)
.-||.++=-.|.-+|.. +..+|-+|+.||.|.-.-|..|-|.+ .+-.-+.--+..|++-+|+.|-
T Consensus 45 e~Fd~qepTClQTRL~LYkqGLrGsltkLkg~LtmmAshYkqhCppTpEtsC~Tq~iTFksFkenLK~FLf 115 (121)
T cd00040 45 EMFDPQEPTCLQTRLKLYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCETQIITFKSFKENLKDFLF 115 (121)
T ss_pred hccCCCCccHHHHHHHHHHhhccccHHHhccHHHHHHHHHHhcCCCCCCCcccceeeeHHHHHHHHHHHHh
Confidence 35777777777777755 55677899999999999999999994 4444444445667777777663
No 25
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=25.97 E-value=75 Score=21.46 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=18.7
Q ss_pred ccCCChhhhhhhhhH--------------HHHHHHHHHhhh
Q psy16466 24 KVGFPLEQYNCLKNE--------------CGKLENDLARLR 50 (101)
Q Consensus 24 k~~FDVe~YN~LKee--------------lA~vEedLkRLR 50 (101)
-..||.++|..|++= +..+-++|.+||
T Consensus 30 ~~~f~~~~yedl~diy~~V~~K~~fS~sEm~aI~~ELG~LR 70 (71)
T PF06569_consen 30 PEDFSEEKYEDLKDIYEMVMSKDSFSPSEMQAIAEELGQLR 70 (71)
T ss_pred HHhCChhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Confidence 357999999999773 334556666666
No 26
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=25.76 E-value=71 Score=20.88 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=20.8
Q ss_pred hhhhhhhhHHHHHHHHHHhhhCCCC
Q psy16466 30 EQYNCLKNECGKLENDLARLRDPLI 54 (101)
Q Consensus 30 e~YN~LKeelA~vEedLkRLRdPL~ 54 (101)
..=|+||-++-.++++|.-.|..+.
T Consensus 10 ~ERNeLK~~v~~leEEL~~yk~~~~ 34 (60)
T PF11461_consen 10 QERNELKARVFLLEEELAYYKSELL 34 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3459999999999999998886554
No 27
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=25.74 E-value=74 Score=22.46 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=16.6
Q ss_pred hhhhhhhHHHHHHHHHHhhhCC
Q psy16466 31 QYNCLKNECGKLENDLARLRDP 52 (101)
Q Consensus 31 ~YN~LKeelA~vEedLkRLRdP 52 (101)
.++++-.-+.+.|++|+||+.-
T Consensus 78 ~~~evL~sv~KtEeSL~rlkk~ 99 (125)
T PF12022_consen 78 IASEVLTSVRKTEESLKRLKKR 99 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566677889999999864
No 28
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=25.24 E-value=94 Score=22.42 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=15.6
Q ss_pred cCcchhhHHHHHHHHHhhhhccCC
Q psy16466 4 YYLPDVRDRQFLIHLHKRAKKVGF 27 (101)
Q Consensus 4 Y~Yp~ardRq~L~~FHK~Akk~~F 27 (101)
-.||.||+| +-+-..+-++
T Consensus 61 iSYPTvR~r-----Ld~ii~~lg~ 79 (113)
T PF09862_consen 61 ISYPTVRNR-----LDKIIEKLGY 79 (113)
T ss_pred CCcHHHHHH-----HHHHHHHhCC
Confidence 369999999 8888888777
No 29
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=24.01 E-value=81 Score=20.82 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.2
Q ss_pred ChhhhhhhhhHHHHHHHHHHhhhCCC
Q psy16466 28 PLEQYNCLKNECGKLENDLARLRDPL 53 (101)
Q Consensus 28 DVe~YN~LKeelA~vEedLkRLRdPL 53 (101)
+=+.|-+|+++++.++.+|..+.+.+
T Consensus 34 ~seeY~eL~~ri~~lr~~ld~~~~~~ 59 (71)
T PF08663_consen 34 ESEEYQELEDRIEELRAELDDTLDEF 59 (71)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999998887665
No 30
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=23.68 E-value=58 Score=19.69 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=9.4
Q ss_pred cchhhHHHHHHHHH
Q psy16466 6 LPDVRDRQFLIHLH 19 (101)
Q Consensus 6 Yp~ardRq~L~~FH 19 (101)
-||+..||+|+++=
T Consensus 3 VPdm~RR~lmN~ll 16 (39)
T PF08802_consen 3 VPDMSRRQLMNLLL 16 (39)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH
Confidence 48899999998863
No 31
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=23.12 E-value=37 Score=21.78 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=15.9
Q ss_pred hhhccCCChhhhhhhhhHHHH
Q psy16466 21 RAKKVGFPLEQYNCLKNECGK 41 (101)
Q Consensus 21 ~Akk~~FDVe~YN~LKeelA~ 41 (101)
+.++=.|+++.||.|.+.+..
T Consensus 26 ~Tr~W~F~L~Dy~~L~~~~~~ 46 (55)
T PF07443_consen 26 KTRKWNFSLEDYSTLMKKVRN 46 (55)
T ss_pred cceeeeeeHHHHHHHHHHHhc
Confidence 345668999999999876643
No 32
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=22.80 E-value=90 Score=21.19 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=19.6
Q ss_pred CCChhhhhhhhhHHHHHHHHHHh
Q psy16466 26 GFPLEQYNCLKNECGKLENDLAR 48 (101)
Q Consensus 26 ~FDVe~YN~LKeelA~vEedLkR 48 (101)
=-|-.+||++.++|.++|+.+.-
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf 30 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEF 30 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHh
Confidence 34778999999999999998764
No 33
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.69 E-value=91 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.4
Q ss_pred hhhhhhhhHHHHHHHHHHhhhC
Q psy16466 30 EQYNCLKNECGKLENDLARLRD 51 (101)
Q Consensus 30 e~YN~LKeelA~vEedLkRLRd 51 (101)
+..+.|..++++++..|.+|..
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6788999999999999999864
No 34
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.38 E-value=67 Score=21.91 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHhhhCCCCCC
Q psy16466 34 CLKNECGKLENDLARLRDPLIPP 56 (101)
Q Consensus 34 ~LKeelA~vEedLkRLRdPL~l~ 56 (101)
+||+++.++|.+|..++.-.++.
T Consensus 11 ~Lk~eiqkle~ELq~~~~~~qIk 33 (76)
T PF07334_consen 11 RLKEEIQKLEAELQQNKREFQIK 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 69999999999999988775543
No 35
>TIGR03782 Bac_Flav_CT_J Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6.
Probab=22.04 E-value=62 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHhhhhccCCChhhhhhhhhHHHHHHHHHHhhhCCCC
Q psy16466 17 HLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDPLI 54 (101)
Q Consensus 17 ~FHK~Akk~~FDVe~YN~LKeelA~vEedLkRLRdPL~ 54 (101)
-.|...+.+.||+++|.+-||++ +....+|+|-.
T Consensus 89 gT~~m~~~q~~dl~~l~~qkd~L----~~e~~~r~~~t 122 (322)
T TIGR03782 89 GTHSMLEGQTLDMNRYREQKDKL----EYEAMVRDPET 122 (322)
T ss_pred hHHHHHHccHHHHHHHHHHHHHH----HHHHHhcCcch
Confidence 46888999999999999999887 34456788854
No 36
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.94 E-value=1.2e+02 Score=19.52 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=12.1
Q ss_pred hhhhhhhhHHHHHHHHHHhhh
Q psy16466 30 EQYNCLKNECGKLENDLARLR 50 (101)
Q Consensus 30 e~YN~LKeelA~vEedLkRLR 50 (101)
.+|+.|..++..+...+..|.
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~ 25 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLE 25 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555554
No 37
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=20.75 E-value=1.3e+02 Score=20.19 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=24.0
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhCCCC
Q psy16466 29 LEQYNCLKNECGKLENDLARLRDPLI 54 (101)
Q Consensus 29 Ve~YN~LKeelA~vEedLkRLRdPL~ 54 (101)
++.||+...+..++.++-.+.-.||.
T Consensus 32 l~~y~~~~~~~~~l~~~Ye~~yGPLt 57 (78)
T PF12652_consen 32 LEYYNEYSKQRKQLKKEYEKRYGPLT 57 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 67899999999999999999999987
Done!