Query psy16466
Match_columns 101
No_of_seqs 67 out of 69
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 22:03:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pcf_A P15, transcriptional co 66.7 3.4 0.00011 26.3 2.1 25 25-49 42-66 (66)
2 2wg5_A General control protein 59.8 6.9 0.00024 26.2 2.8 23 30-52 14-36 (109)
3 3kin_B Kinesin heavy chain; mo 58.0 7.6 0.00026 26.4 2.8 22 30-51 96-117 (117)
4 3sol_A Type II secretion pathw 53.2 13 0.00045 25.2 3.3 50 3-52 23-73 (94)
5 4a56_A PULS, pullulanase secre 45.6 17 0.00058 24.5 2.9 50 3-52 23-73 (93)
6 3utk_A Lipoprotein OUTS; neste 44.4 18 0.0006 26.0 3.0 50 3-52 60-110 (133)
7 3v86_A De novo design helix; c 42.6 14 0.00048 20.1 1.7 19 34-52 4-22 (27)
8 1vmg_A Hypothetical protein SS 31.8 19 0.00065 23.6 1.4 32 16-47 18-56 (95)
9 1g6u_A Domain swapped dimer; d 31.7 17 0.00058 22.0 1.0 33 21-53 11-43 (48)
10 3q0x_A Centriole protein; cent 29.2 32 0.0011 26.3 2.5 22 30-51 171-192 (228)
11 3m9b_A Proteasome-associated A 28.6 39 0.0013 26.4 2.9 24 29-52 74-97 (251)
12 2y3w_A SAS6, spindle assembly 28.3 37 0.0013 24.5 2.6 24 30-53 158-181 (182)
13 2lf0_A Uncharacterized protein 27.0 43 0.0015 23.9 2.7 60 22-82 28-92 (123)
14 1q90_R Cytochrome B6-F complex 26.7 29 0.00099 20.8 1.5 14 5-18 5-18 (49)
15 1zme_C Proline utilization tra 26.5 30 0.001 20.0 1.5 22 32-53 46-67 (70)
16 1go4_E MAD1 (mitotic arrest de 25.8 47 0.0016 22.6 2.6 25 29-53 11-35 (100)
17 3aei_A Prefoldin beta subunit 23.2 42 0.0014 22.9 1.9 22 33-54 78-99 (99)
18 3ra3_B P2F; coiled coil domain 22.7 62 0.0021 17.6 2.2 18 33-50 10-27 (28)
19 3o8s_A Nudix hydrolase, ADP-ri 21.6 20 0.00067 24.9 0.0 18 24-41 26-43 (206)
20 1t3j_A Mitofusin 1; coiled coi 20.8 59 0.002 22.0 2.3 17 33-49 50-66 (96)
21 1hwt_C Protein (heme activator 20.6 29 0.001 20.7 0.7 20 33-52 61-80 (81)
22 3cra_A Protein MAZG; tandem-re 20.5 69 0.0024 24.9 2.9 30 17-46 149-182 (265)
No 1
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=66.70 E-value=3.4 Score=26.28 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=22.0
Q ss_pred cCCChhhhhhhhhHHHHHHHHHHhh
Q psy16466 25 VGFPLEQYNCLKNECGKLENDLARL 49 (101)
Q Consensus 25 ~~FDVe~YN~LKeelA~vEedLkRL 49 (101)
..+..++||.|++-+.++++.|++|
T Consensus 42 IsL~~~qw~~l~~~~~~I~~ai~~~ 66 (66)
T 1pcf_A 42 ISLNPEQWSQLKEQISDIDDAVRKL 66 (66)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhC
Confidence 3478899999999999999999875
No 2
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=59.81 E-value=6.9 Score=26.21 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.3
Q ss_pred hhhhhhhhHHHHHHHHHHhhhCC
Q psy16466 30 EQYNCLKNECGKLENDLARLRDP 52 (101)
Q Consensus 30 e~YN~LKeelA~vEedLkRLRdP 52 (101)
++.|.|++++.++++++++|+.|
T Consensus 14 ~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 14 DKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 45788999999999999999976
No 3
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=57.99 E-value=7.6 Score=26.38 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=18.5
Q ss_pred hhhhhhhhHHHHHHHHHHhhhC
Q psy16466 30 EQYNCLKNECGKLENDLARLRD 51 (101)
Q Consensus 30 e~YN~LKeelA~vEedLkRLRd 51 (101)
+++..|++.++.+|++|.|.|+
T Consensus 96 ~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 96 EKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 4577889999999999999885
No 4
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=53.17 E-value=13 Score=25.15 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=39.1
Q ss_pred ccCcchhhHHH-HHHHHHhhhhccCCChhhhhhhhhHHHHHHHHHHhhhCC
Q psy16466 3 EYYLPDVRDRQ-FLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDP 52 (101)
Q Consensus 3 dY~Yp~ardRq-~L~~FHK~Akk~~FDVe~YN~LKeelA~vEedLkRLRdP 52 (101)
+.-|.++-|.+ -....=+-|+.++.|+..||.|..--.+...+|.+..-|
T Consensus 23 ~C~~~diPd~~~I~~~a~~~A~~~gWD~~~y~~l~~~s~~~Y~~L~~d~~p 73 (94)
T 3sol_A 23 RCNRSDLPDEQSILNVANRIAIGKGWQSLTQEDIRKHSDDIYVRLTRDSTP 73 (94)
T ss_dssp HSCCTTSCCHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHhccCCC
Confidence 34566777777 666777889999999999999888777777888775544
No 5
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=45.60 E-value=17 Score=24.52 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=38.4
Q ss_pred ccCcchhhHHH-HHHHHHhhhhccCCChhhhhhhhhHHHHHHHHHHhhhCC
Q psy16466 3 EYYLPDVRDRQ-FLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDP 52 (101)
Q Consensus 3 dY~Yp~ardRq-~L~~FHK~Akk~~FDVe~YN~LKeelA~vEedLkRLRdP 52 (101)
+.-|.++-|.+ -....=+-|+.+|.|+-.||.|..--.+...+|.+..-|
T Consensus 23 ~C~~~diPd~~~I~~~a~~~A~~~~Wd~~~y~~l~~~s~~~Y~~L~~d~~~ 73 (93)
T 4a56_A 23 KCNRSDLPADEAINRAAINVGKKRGWANIDANLLSQRSAQLYQQLQQDSTP 73 (93)
T ss_dssp HSCCTTSCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHhccCCC
Confidence 34566777777 666677889999999999999887777777888775544
No 6
>3utk_A Lipoprotein OUTS; nested (perpendicular) alpha-helical hairpins, protein trans pilot protein; 1.65A {Dickeya dadantii} PDB: 3uym_A
Probab=44.36 E-value=18 Score=25.97 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=39.4
Q ss_pred ccCcchhhHHH-HHHHHHhhhhccCCChhhhhhhhhHHHHHHHHHHhhhCC
Q psy16466 3 EYYLPDVRDRQ-FLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRDP 52 (101)
Q Consensus 3 dY~Yp~ardRq-~L~~FHK~Akk~~FDVe~YN~LKeelA~vEedLkRLRdP 52 (101)
+.-|.|+-|.+ -....=+-|+.+|.|+..||.|..--.+...+|.+..-|
T Consensus 60 ~CgrsDiPd~~~I~r~av~~A~~rgWD~s~y~~l~~~se~~Yq~L~~d~~p 110 (133)
T 3utk_A 60 QCERSDLPDDGTILKTAVNVAVQKGWDTGRYQSLPQLSENLYQGLLKDGTP 110 (133)
T ss_dssp HSCCTTSCCHHHHHHHHHHHHHHTTCCTTSCTTSHHHHHHHHHHHHHSSCC
T ss_pred cCCCccCCcHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhccCCC
Confidence 44566777777 666677789999999999999988877788888876554
No 7
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=42.59 E-value=14 Score=20.08 Aligned_cols=19 Identities=37% Similarity=0.671 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHhhhCC
Q psy16466 34 CLKNECGKLENDLARLRDP 52 (101)
Q Consensus 34 ~LKeelA~vEedLkRLRdP 52 (101)
+|||++.++..+.+.|.|.
T Consensus 4 qlkdevgelkgevralkde 22 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDE 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHH
Confidence 6888888888888887764
No 8
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=31.84 E-value=19 Score=23.63 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=22.7
Q ss_pred HHHHhhhhccCCCh-------hhhhhhhhHHHHHHHHHH
Q psy16466 16 IHLHKRAKKVGFPL-------EQYNCLKNECGKLENDLA 47 (101)
Q Consensus 16 ~~FHK~Akk~~FDV-------e~YN~LKeelA~vEedLk 47 (101)
.-+-++|.+.+||- ..+..|.+|+.++.+.++
T Consensus 18 ~~lq~~a~~~gfdw~~~~~~~~~~~kl~EE~gEl~eai~ 56 (95)
T 1vmg_A 18 KELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALL 56 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999984 445677777777766664
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.65 E-value=17 Score=22.01 Aligned_cols=33 Identities=39% Similarity=0.526 Sum_probs=25.9
Q ss_pred hhhccCCChhhhhhhhhHHHHHHHHHHhhhCCC
Q psy16466 21 RAKKVGFPLEQYNCLKNECGKLENDLARLRDPL 53 (101)
Q Consensus 21 ~Akk~~FDVe~YN~LKeelA~vEedLkRLRdPL 53 (101)
.-++.+|.-+.--.|..++..+|..|..|..-|
T Consensus 11 alkkegfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 11 ALKKEGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999988888888888888887776544
No 10
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.24 E-value=32 Score=26.30 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.7
Q ss_pred hhhhhhhhHHHHHHHHHHhhhC
Q psy16466 30 EQYNCLKNECGKLENDLARLRD 51 (101)
Q Consensus 30 e~YN~LKeelA~vEedLkRLRd 51 (101)
.+||.+|.++..++..|.+.+.
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~ 192 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRD 192 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999886
No 11
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.61 E-value=39 Score=26.38 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=19.8
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhCC
Q psy16466 29 LEQYNCLKNECGKLENDLARLRDP 52 (101)
Q Consensus 29 Ve~YN~LKeelA~vEedLkRLRdP 52 (101)
.+.-+.+++++.+++++|++|+.|
T Consensus 74 ~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 74 METLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456788888888999999999876
No 12
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=28.33 E-value=37 Score=24.54 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.0
Q ss_pred hhhhhhhhHHHHHHHHHHhhhCCC
Q psy16466 30 EQYNCLKNECGKLENDLARLRDPL 53 (101)
Q Consensus 30 e~YN~LKeelA~vEedLkRLRdPL 53 (101)
.+||.+|.+++.++..|.+.++.|
T Consensus 158 ~rl~~~k~~~~~l~~~L~~~~~~~ 181 (182)
T 2y3w_A 158 SCLSSVKEEKQQLQQKLRKTEEDL 181 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 469999999999999999988765
No 13
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=26.97 E-value=43 Score=23.90 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=39.0
Q ss_pred hhccCCChhhhhhhhhHHHHHHHHHHhhhCCCCC--CCCCc-cccccC--cccccccCchhHhhHH
Q psy16466 22 AKKVGFPLEQYNCLKNECGKLENDLARLRDPLIP--PYRGY-EFQVPS--DLSYKQPSSSINKFKE 82 (101)
Q Consensus 22 Akk~~FDVe~YN~LKeelA~vEedLkRLRdPL~l--~~~~~-~~~~p~--~~~~~~~~~~~~~~~~ 82 (101)
|-..+=|.+.+-++.+|++.++.++.||++--.- .-.|+ ...+|. -++..|+... -++|+
T Consensus 28 aa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~lpFsR~iTK~EQADm-GkLKK 92 (123)
T 2lf0_A 28 DLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADM-GKLKK 92 (123)
T ss_dssp HSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCSEEEECCHHHHHTH-HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCccccccHHHHHhH-HHHhh
Confidence 3455669999999999999999999999964332 22222 234555 3666655543 44443
No 14
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=26.72 E-value=29 Score=20.83 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=12.0
Q ss_pred CcchhhHHHHHHHH
Q psy16466 5 YLPDVRDRQFLIHL 18 (101)
Q Consensus 5 ~Yp~ardRq~L~~F 18 (101)
..||+..||||+++
T Consensus 5 ~~pdm~RRqfln~l 18 (49)
T 1q90_R 5 EVPDMNKRNIMNLI 18 (49)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred cCCChHHHHHHHHH
Confidence 46999999999875
No 15
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.46 E-value=30 Score=20.03 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHHhhhCCC
Q psy16466 32 YNCLKNECGKLENDLARLRDPL 53 (101)
Q Consensus 32 YN~LKeelA~vEedLkRLRdPL 53 (101)
-..|.++++.+|..|..|+.-|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998754
No 16
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.76 E-value=47 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=19.2
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhCCC
Q psy16466 29 LEQYNCLKNECGKLENDLARLRDPL 53 (101)
Q Consensus 29 Ve~YN~LKeelA~vEedLkRLRdPL 53 (101)
=+.||.|+.+++.++.+=.|||.-.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999998888888877777433
No 17
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=23.16 E-value=42 Score=22.89 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHhhhCCCC
Q psy16466 33 NCLKNECGKLENDLARLRDPLI 54 (101)
Q Consensus 33 N~LKeelA~vEedLkRLRdPL~ 54 (101)
..|++.-.++-++|.|||.||.
T Consensus 78 e~l~~~ekeime~ls~l~~pls 99 (99)
T 3aei_A 78 EKLKKREKEIMEELSKLRAPLS 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhhccCCC
Confidence 3677777788899999999984
No 18
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.72 E-value=62 Score=17.59 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHHHhhh
Q psy16466 33 NCLKNECGKLENDLARLR 50 (101)
Q Consensus 33 N~LKeelA~vEedLkRLR 50 (101)
-.||.++|.+|.++..|.
T Consensus 10 arlkqeiaaleyeiaale 27 (28)
T 3ra3_B 10 ARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 478999999999887663
No 19
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=21.57 E-value=20 Score=24.93 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=0.0
Q ss_pred ccCCChhhhhhhhhHHHH
Q psy16466 24 KVGFPLEQYNCLKNECGK 41 (101)
Q Consensus 24 k~~FDVe~YN~LKeelA~ 41 (101)
+..||+++|++|++-.++
T Consensus 26 ~~~~d~er~~~l~~~~~~ 43 (206)
T 3o8s_A 26 KDVYDMERFEEIRQIAAE 43 (206)
T ss_dssp ------------------
T ss_pred CCchhHHHHHHHHHHHHH
Confidence 788999999999886554
No 20
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.84 E-value=59 Score=22.03 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHhh
Q psy16466 33 NCLKNECGKLENDLARL 49 (101)
Q Consensus 33 N~LKeelA~vEedLkRL 49 (101)
|+|++|+++++.++.+|
T Consensus 50 ~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQL 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777777777665
No 21
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.56 E-value=29 Score=20.65 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=9.7
Q ss_pred hhhhhHHHHHHHHHHhhhCC
Q psy16466 33 NCLKNECGKLENDLARLRDP 52 (101)
Q Consensus 33 N~LKeelA~vEedLkRLRdP 52 (101)
..|.++++.+|..|..|+.+
T Consensus 61 ~~L~~ri~~LE~~l~~l~~~ 80 (81)
T 1hwt_C 61 KKLRERVKSLEKTLSKVHSS 80 (81)
T ss_dssp HHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 45677777777777666543
No 22
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=20.46 E-value=69 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=20.4
Q ss_pred HHHhhhhccCCChhhh----hhhhhHHHHHHHHH
Q psy16466 17 HLHKRAKKVGFPLEQY----NCLKNECGKLENDL 46 (101)
Q Consensus 17 ~FHK~Akk~~FDVe~Y----N~LKeelA~vEedL 46 (101)
-+.++|.+.|||.+.. -++.+++.++.+.+
T Consensus 149 kiq~raa~vGfdw~~~~~v~~Kl~EEl~El~eal 182 (265)
T 3cra_A 149 KIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEA 182 (265)
T ss_dssp HHHHHHHTTTCSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 3678999999998743 34555555555544
Done!