Query psy16466
Match_columns 101
No_of_seqs 67 out of 69
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 22:03:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16466.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16466hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r73a_ a.2.2.1 (A:) Ribosomal 47.5 4.7 0.00034 23.6 1.9 51 34-97 13-66 (66)
2 d1pcfa_ d.18.1.1 (A:) Transcri 37.1 9.5 0.00069 22.6 2.1 24 26-49 43-66 (66)
3 d2i9ca1 a.118.1.25 (A:3-123) H 25.2 24 0.0017 23.0 2.7 39 16-54 14-61 (121)
4 d2gycw1 a.2.2.1 (W:1-60) Ribos 22.2 63 0.0046 17.9 4.5 44 34-90 13-59 (60)
5 d2zjrv1 a.2.2.1 (V:1-66) Ribos 18.0 42 0.0031 19.1 2.5 50 34-96 13-65 (66)
6 d2hgka1 a.29.17.1 (A:1-109) Hy 14.6 49 0.0036 21.0 2.4 20 31-50 3-22 (109)
7 d2pi2e1 b.40.4.3 (E:3-117) Rep 12.8 42 0.003 20.9 1.6 16 25-40 90-105 (115)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 12.7 69 0.0051 19.3 2.7 31 31-66 26-56 (133)
9 d1r7ja_ a.4.5.49 (A:) Sso10a ( 12.4 55 0.004 19.7 2.1 21 29-49 68-88 (90)
10 d2fcwa1 a.13.1.1 (A:216-320) a 12.0 1.3E+02 0.0095 19.1 4.0 43 3-51 2-44 (105)
No 1
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=47.51 E-value=4.7 Score=23.59 Aligned_cols=51 Identities=29% Similarity=0.304 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHhhhCCCCCCCCCccccccCcccccccCchhHhhH---HHHHHHHHhhcCCCCC
Q psy16466 34 CLKNECGKLENDLARLRDPLIPPYRGYEFQVPSDLSYKQPSSSINKFK---EQIKMILSKQSHGANK 97 (101)
Q Consensus 34 ~LKeelA~vEedLkRLRdPL~l~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 97 (101)
+|.+++.++..+|-.||=-.. +.-.+.++-+...+ +||+-++++.+-|.+|
T Consensus 13 eL~~~l~~l~~el~~LRfq~~-------------~gql~~~~~i~~~Rk~IARi~Tvl~er~~~~~k 66 (66)
T d1r73a_ 13 ELKNLLEEKKRQLMELRFQLA-------------MGQLKNTSLIKLTKRDIARIKTILRERELGIRR 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------HTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HCCCCChHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 677888888888888872111 12223344445554 4999999999988775
No 2
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.08 E-value=9.5 Score=22.61 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.1
Q ss_pred CCChhhhhhhhhHHHHHHHHHHhh
Q psy16466 26 GFPLEQYNCLKNECGKLENDLARL 49 (101)
Q Consensus 26 ~FDVe~YN~LKeelA~vEedLkRL 49 (101)
.+..++++.|++-+.++++.++.|
T Consensus 43 sL~~~qw~~l~~~~~~i~~ai~~l 66 (66)
T d1pcfa_ 43 SLNPEQWSQLKEQISDIDDAVRKL 66 (66)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECHHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999999999998865
No 3
>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=25.23 E-value=24 Score=23.04 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=31.0
Q ss_pred HHHHhhhhcc-----CCChhhhhhhhhHHHHHHHHHHhh----hCCCC
Q psy16466 16 IHLHKRAKKV-----GFPLEQYNCLKNECGKLENDLARL----RDPLI 54 (101)
Q Consensus 16 ~~FHK~Akk~-----~FDVe~YN~LKeelA~vEedLkRL----RdPL~ 54 (101)
..|.+.+..+ ..|+.+||++=+++..+-.+|++. |+-|-
T Consensus 14 ~~F~~~~i~q~~A~~~~d~~~~NR~~~kl~~~~~eLk~~~g~~R~aLl 61 (121)
T d2i9ca1 14 ALFAKVTVEQDDALLGNQISRFNRLFGVMAEIADELKARDGDQRTALL 61 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 3366666554 689999999999999999999997 55554
No 4
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=22.16 E-value=63 Score=17.90 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHhhhCCCCCCCCCccccccCcccccccCchhHhhHH---HHHHHHHh
Q psy16466 34 CLKNECGKLENDLARLRDPLIPPYRGYEFQVPSDLSYKQPSSSINKFKE---QIKMILSK 90 (101)
Q Consensus 34 ~LKeelA~vEedLkRLRdPL~l~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~ 90 (101)
+|.+++.++..+|-.||=... ....+.++-+...+. ||+-+|++
T Consensus 13 eL~~~l~~l~~el~~lRfq~~-------------~gql~~~~~i~~~Rk~IARi~Tvl~e 59 (60)
T d2gycw1 13 ELNTELLNLLREQFNLRMQAA-------------SGQLQQSHLLKQVRRDVARVKTLLNE 59 (60)
T ss_dssp HHHHHHHHHHHHHHHCCCSTT-------------TCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 688888888888888873222 112233444455544 77777765
No 5
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=17.97 E-value=42 Score=19.13 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHhhhCCCCCCCCCccccccCcccccccCchhHhhH---HHHHHHHHhhcCCCC
Q psy16466 34 CLKNECGKLENDLARLRDPLIPPYRGYEFQVPSDLSYKQPSSSINKFK---EQIKMILSKQSHGAN 96 (101)
Q Consensus 34 ~LKeelA~vEedLkRLRdPL~l~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 96 (101)
+|.+++.++..+|-.|| ++ .. ..-++.++-+...| +||+.+|++.+-++.
T Consensus 13 eL~~~l~~lk~elf~LR--fq----~~-------tgql~n~~~ik~~Rk~IARi~Tvl~er~~~~~ 65 (66)
T d2zjrv1 13 DFAKEIDARKKELMELR--FQ----AA-------AGQLAQPHRVRQLRREVAQLNTVKAELARKGE 65 (66)
T ss_dssp HHHHHHHTHHHHHHHHH--HH----HH-------HSCCCCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHH--HH----HH-------HCCCcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 78888888999988888 11 11 11223344445553 489999998876654
No 6
>d2hgka1 a.29.17.1 (A:1-109) Hypothetical protein YqcC {Escherichia coli [TaxId: 562]}
Probab=14.57 E-value=49 Score=21.01 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=18.4
Q ss_pred hhhhhhhHHHHHHHHHHhhh
Q psy16466 31 QYNCLKNECGKLENDLARLR 50 (101)
Q Consensus 31 ~YN~LKeelA~vEedLkRLR 50 (101)
.||++++.|-++|..||++-
T Consensus 3 ~~~~v~~~L~~LE~~Lr~~~ 22 (109)
T d2hgka1 3 THDRVRLQLQALEALLREHQ 22 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 58999999999999999986
No 7
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.78 E-value=42 Score=20.88 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=12.2
Q ss_pred cCCChhhhhhhhhHHH
Q psy16466 25 VGFPLEQYNCLKNECG 40 (101)
Q Consensus 25 ~~FDVe~YN~LKeelA 40 (101)
..||.+-||+|-.-+.
T Consensus 90 ~~fD~~~yn~lv~l~~ 105 (115)
T d2pi2e1 90 HPFDLGLYNEAVKIIH 105 (115)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHH
Confidence 4699999999865443
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.67 E-value=69 Score=19.28 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=14.1
Q ss_pred hhhhhhhHHHHHHHHHHhhhCCCCCCCCCccccccC
Q psy16466 31 QYNCLKNECGKLENDLARLRDPLIPPYRGYEFQVPS 66 (101)
Q Consensus 31 ~YN~LKeelA~vEedLkRLRdPL~l~~~~~~~~~p~ 66 (101)
..|....++..+.+.|+.|.+. -+.+..+|+
T Consensus 26 ~l~~~~~e~~~~~~~L~~l~~~-----~~~e~lvpl 56 (133)
T d1fxkc_ 26 AVRATISELEILEKTLSDIQGK-----DGSETLVPV 56 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-----TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-----CCCeEEEEc
Confidence 3344444444444555555432 233455665
No 9
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=12.45 E-value=55 Score=19.71 Aligned_cols=21 Identities=10% Similarity=0.464 Sum_probs=16.3
Q ss_pred hhhhhhhhhHHHHHHHHHHhh
Q psy16466 29 LEQYNCLKNECGKLENDLARL 49 (101)
Q Consensus 29 Ve~YN~LKeelA~vEedLkRL 49 (101)
+.+++++.+++.+++++++-|
T Consensus 68 ~~~~~~~~~~l~~l~~~i~~~ 88 (90)
T d1r7ja_ 68 IRKFNEMRKNMDQLKEKINSV 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887654
No 10
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.01 E-value=1.3e+02 Score=19.07 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=34.7
Q ss_pred ccCcchhhHHHHHHHHHhhhhccCCChhhhhhhhhHHHHHHHHHHhhhC
Q psy16466 3 EYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLARLRD 51 (101)
Q Consensus 3 dY~Yp~ardRq~L~~FHK~Akk~~FDVe~YN~LKeelA~vEedLkRLRd 51 (101)
||+=|-|.+ +-+.|...+|--+.-+.||+||---|..|--+|+
T Consensus 2 EF~EPkVq~------LW~~A~~~nFt~~EL~SlkeEL~HfE~rl~K~rH 44 (105)
T d2fcwa1 2 EFEEPRVID------LWDLAQSANLTDKELEAFREELKHFEAKIEKHNH 44 (105)
T ss_dssp SCCSHHHHH------HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHH------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544 5688999999999999999999999998888875
Done!