RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16466
         (101 letters)



>gnl|CDD|218209 pfam04678, DUF607, Protein of unknown function, DUF607.  This
           family represents a conserved region found in several
           uncharacterized eukaryotic proteins.
          Length = 180

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 14/34 (41%)

Query: 3   EYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLK 36
           E       DR F     K  K+ GF LE+Y  L 
Sbjct: 147 EPSYEAADDRLFSARQKKLYKRKGFDLERYEELV 180


>gnl|CDD|217853 pfam04031, Las1, Las1-like.  Las1 is an essential nuclear protein
           involved in cell morphogenesis and cell surface growth.
          Length = 149

 Score = 26.5 bits (59), Expect = 2.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 10  RDRQFLIHLHKRAKKVGFP 28
           +  Q+ I + K AK++G P
Sbjct: 91  QQGQYAIPMRKLAKEIGLP 109


>gnl|CDD|143585 cd07316, terB_like_DjlA, N-terminal tellurium resistance protein
          terB-like domain of heat shock DnaJ-like proteins.
          Tellurium resistance terB-like domain of the DnaJ-like
          DjlA proteins. This family represents the terB-like
          domain of DjlA-like proteins, a subgroup of heat shock
          DnaJ-like proteins.  Escherichia coli DjlA is a type
          III membrane protein with a small N-terminal
          transmembrane region and DnaJ-like domain on the
          extreme C-terminus.  Overproduction has been shown to
          activate the RcsC pathway, which regulates the
          production of the capsular exopolysaccharide colanic
          acid.  The specific function of this domain is unknown.
          Length = 106

 Score = 25.6 bits (57), Expect = 3.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 8  DVRDRQFLIHLHKRAKKVGFPLEQY 32
          D   R+  I L    K+  F LE+Y
Sbjct: 34 DAEARREAIRLFNEGKESDFGLEEY 58


>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 458

 Score = 25.6 bits (57), Expect = 5.2
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 5/24 (20%)

Query: 3   EYYLPDVRDRQFLIHLHKRAKKVG 26
           EYYL DV     +  L    +KVG
Sbjct: 195 EYYLTDV-----IEILKNEGEKVG 213


>gnl|CDD|166304 PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate/quinate
           hydroxycinnamoyltransferase.
          Length = 431

 Score = 25.3 bits (55), Expect = 6.7
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 42  LENDLARLRDPLIPPYRGYEFQVPSDL-----SYKQPSSSINKFK---EQIKMILSKQSH 93
           ++  L R RDP  P +   E+Q P  +     + K  +++++ FK   +Q+  + +K   
Sbjct: 183 IDRTLLRARDPPQPAFHHVEYQPPPSMKTPLETSKPENTTVSIFKLTRDQLNTLKAKSKE 242

Query: 94  GAN 96
             N
Sbjct: 243 DGN 245


>gnl|CDD|163405 TIGR03693, ocin_ThiF_like, putative thiazole-containing bacteriocin
           maturation protein.  Members of this protein family are
           found in a three-gene operon in Bacillus anthracis and
           related Bacillus species, where the other two genes are
           clearly identified with maturation of a putative
           thiazole-containing bacteriocin precursor. While there
           is no detectable pairwise sequence similarity between
           members of this family and the proposed
           cyclodehydratases such as SagC of Streptococcus pyogenes
           (see family TIGR03603), both families show similarity
           through PSI-BLAST to ThiF, a protein involved in
           biosynthesis of the thiazole moiety for thiamine
           biosynthesis. This family, therefore, may contribute to
           cyclodehydratase function in heterocycle-containing
           bacteriocin biosyntheses. In Bacillus licheniformis ATCC
           14580, the bacteriocin precursor gene is adjacent to the
           gene for this protein [Cellular processes, Toxin
           production and resistance].
          Length = 637

 Score = 25.4 bits (55), Expect = 7.4
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 43  ENDLARLRDPLIPPYR-------------GYEFQVPSDLSYKQPSSSINKFKEQIKMILS 89
           E+ LA + D L  PY+             G+   V  D  ++  S+ ++++  QI+ I +
Sbjct: 56  EHSLADITDGLPAPYQKRVFEIGEILYKNGFVRDVSQDAPHELESALLDRYAAQIEFIEA 115

Query: 90  KQSHGANKNDTS 101
               GA K + S
Sbjct: 116 DADSGALKFELS 127


>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
           acyltransferase; Validated.
          Length = 1146

 Score = 25.3 bits (56), Expect = 7.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 6   LPDVRDRQFLIHLHKRAKKVGFPL 29
           LPDV    F      +   VG PL
Sbjct: 943 LPDVLAADFKRQTGSKEGSVGMPL 966


>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
          Length = 393

 Score = 25.2 bits (56), Expect = 8.5
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 39  CGKLEND-LARL----RDPLIPPYRGYEFQVPSDLSY 70
           C  L +D LA++     D  I P+RG  +++  + + 
Sbjct: 199 CAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQ 235


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,094,197
Number of extensions: 416638
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 23
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)