RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16466
(101 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.56
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 18/43 (41%)
Query: 36 KNECGKLENDLARLRDPLIPPYRGYEFQVPSDLSYKQPSSSIN 78
K KL+ L +L Y D P+ +I
Sbjct: 19 KQALKKLQASL-KL----------YA---D-D---SAPALAIK 43
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 26.8 bits (60), Expect = 1.2
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 43 ENDLA----RLRDPLIPPYRGYE 61
+ DLA + R P++ YRGY+
Sbjct: 251 KEDLASYNVKWRKPVVGSYRGYK 273
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 26.7 bits (60), Expect = 1.2
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 43 ENDLA----RLRDPLIPPYRGYE 61
E DL + +P+ Y+GY+
Sbjct: 236 EKDLENYDITIDEPIWGDYQGYQ 258
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 26.7 bits (60), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 43 ENDLA----RLRDPLIPPYRGYE 61
+ DLA R P+ YRGY+
Sbjct: 240 KEDLAAYKAVERTPISGDYRGYQ 262
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 45 DLA----RLRDPLIPPYRGYE 61
DLA R P+ YRGY+
Sbjct: 242 DLAAYKAVERTPISGDYRGYQ 262
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes
regional C excellence, GLRCE, capsule
biogenesis/degradation; HET: GLU; 1.79A {Bacillus
anthracis} PDB: 3ga9_L*
Length = 323
Score = 26.4 bits (59), Expect = 1.5
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 43 ENDLA----RLRDPLIPPYRGYE 61
D+ +R P+ Y GY+
Sbjct: 210 LEDIKGYKVEVRKPVKGNYMGYD 232
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 25.9 bits (57), Expect = 1.6
Identities = 1/20 (5%), Positives = 5/20 (25%)
Query: 8 DVRDRQFLIHLHKRAKKVGF 27
D + + ++
Sbjct: 6 DAKSSAYSSRFQTPFRRRRE 25
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_W 4a1c_W 4a1e_W
Length = 111
Score = 26.0 bits (57), Expect = 1.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 7 PDVRDRQFLIHLHKRAKKVGF 27
+ + ++LHK+ K+ F
Sbjct: 4 QEEKSIDTTVNLHKQCHKISF 24
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 25.2 bits (56), Expect = 4.0
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 10 RDRQFLIHLHKRAKKVGF 27
+DR + L +RA++ GF
Sbjct: 133 KDRNVVAQLVRRAERAGF 150
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A
{Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A*
2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Length = 361
Score = 25.5 bits (55), Expect = 4.3
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 1 MMEYYLPDVRDRQFLIHLHKRAKKVGFPLEQYNCLKNECGKLENDLA 47
+ Y LP R + L++ + + L
Sbjct: 253 YLPYVLP--AYRAVYARFSGEPALIDRALDEARAVGTRDEHVRAGLT 297
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 25.2 bits (56), Expect = 4.4
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 10 RDRQFLIHLHKRAKKVGF 27
+DR+ L ++A+K+G+
Sbjct: 157 KDREVTKKLVRQAEKMGY 174
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_G
Length = 219
Score = 24.5 bits (53), Expect = 4.9
Identities = 2/22 (9%), Positives = 3/22 (13%)
Query: 6 LPDVRDRQFLIHLHKRAKKVGF 27
R + K
Sbjct: 12 KRASRSHTYHRRGLWAIKAKHG 33
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1
d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A
2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A*
3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A*
1ynn_A* ...
Length = 315
Score = 24.8 bits (55), Expect = 6.1
Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 8/27 (29%)
Query: 32 YNCLKNE--------CGKLENDLARLR 50
+ LK E DL +
Sbjct: 266 LHSLKEEGIESVRALLALNLKDLKNIP 292
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_A
Length = 329
Score = 24.7 bits (55), Expect = 6.9
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 8/27 (29%)
Query: 32 YNCLKNE--------CGKLENDLARLR 50
NCLK E + E +L +
Sbjct: 267 ANCLKAEAIHYIGDLVQRTEVELLKTP 293
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 24.4 bits (54), Expect = 7.7
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 10 RDRQFLIHLHKRAKKVGF 27
+D Q + AK G
Sbjct: 143 KDDQQNRDILDEAKSDGA 160
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 24.4 bits (54), Expect = 8.1
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 3 EYYLPDV 9
E YL DV
Sbjct: 213 ELYLTDV 219
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe;
acetyltransferase, bifunctional, drug design; HET: ACO
UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4
c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A*
1g95_A*
Length = 468
Score = 24.4 bits (54), Expect = 8.6
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 3 EYYLPDV 9
EYY+ DV
Sbjct: 204 EYYITDV 210
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics,
national institute allergy and infectious diseases; HET:
GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A
1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Length = 459
Score = 24.4 bits (54), Expect = 9.2
Identities = 3/7 (42%), Positives = 6/7 (85%)
Query: 3 EYYLPDV 9
E+Y+ D+
Sbjct: 198 EFYITDI 204
>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin,
2-isocyano-6,7-dihydroxycoum transferase; HET: PGE;
2.10A {Pseudomonas aeruginosa}
Length = 330
Score = 24.2 bits (52), Expect = 9.7
Identities = 6/56 (10%), Positives = 12/56 (21%), Gaps = 3/56 (5%)
Query: 35 LKNECGKLENDLARL---RDPLIPPYRGYEFQVPSDLSYKQPSSSINKFKEQIKMI 87
L + + + + YR + D S + K
Sbjct: 174 LIGGYAEPLESIRETLLASEEGLLLYRAITRFLYEDGLTPDYQGSKTALQRDAKER 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,498,668
Number of extensions: 75672
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 30
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)