RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16466
         (101 letters)



>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 308

 Score = 25.2 bits (55), Expect = 1.8
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 17  HLHKRAKKVGFPLEQYNC-----LKNECGKLENDLARLRDPLIPPYRGYEFQVPSDLSYK 71
           +L + A  +G   E +              L  +L  + D +        F+   +L   
Sbjct: 109 YLRRTASMIGVRGELHGTEVDFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELF-- 166

Query: 72  QPSSSINKFKEQIKMI 87
              S + K  E +K +
Sbjct: 167 -SRSEVRKIVESVKAV 181


>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia
          coli [TaxId: 562]}
          Length = 94

 Score = 22.6 bits (48), Expect = 9.1
 Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 4/24 (16%)

Query: 8  DVRDRQFLIHLHKRAKKVGFPLEQ 31
          D++  +F+    + A+++GF LE 
Sbjct: 2  DLQRLKFI----RHARQLGFSLES 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,502
Number of extensions: 15574
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 8
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)