BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16468
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 228/312 (73%), Gaps = 43/312 (13%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+GTGESGKSTFIKQMRIIHGSGYSDEDKRGF KLVYQNIF AMQ+MIRAMD LKI Y
Sbjct: 38 LLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKY 97
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLME 137
+ A+L+R VD E V+ FE+PYV+AIK LW DPGIQECYDRRREYQL+DS KYYL +
Sbjct: 98 EHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 157
Query: 138 IDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
+DRVA P+YLPT+QD+LRVRVPTTGIIEYPFDL+ + FRMVDVGGQRSERRKWIHC
Sbjct: 158 LDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC---- 213
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
FENVTSI+FLVALSEYDQ+L ES+NENRMEESKALF+TIITY
Sbjct: 214 ------------------FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 255
Query: 258 PWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQR 317
PWFQ+S V + F N L + + + ++Y P + GPQR
Sbjct: 256 PWFQNSSV------------------ILFLNKKDLLEEKIMYSHLVDYF---PEYDGPQR 294
Query: 318 DAIAAREFILRM 329
DA AAREFIL+M
Sbjct: 295 DAQAAREFILKM 306
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 83/137 (60%), Gaps = 46/137 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDL----------------------- 402
YL DL R+ DP Y+PT+QD+LR R PTTGIIEYPFDL
Sbjct: 154 YLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC 213
Query: 403 -----------------------DGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
D NRMEESKALF+TIITYPWFQ+SSVILFLNKKDLL
Sbjct: 214 FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 273
Query: 440 EEKIMYSHLVDYFPEYD 456
EEKIMYSHLVDYFPEYD
Sbjct: 274 EEKIMYSHLVDYFPEYD 290
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 228/312 (73%), Gaps = 43/312 (13%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+GTGESGKSTFIKQMRIIHGSGYSDEDKRGF KLVYQNIF AMQ+MIRAMD LKI Y
Sbjct: 38 LLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKY 97
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLME 137
+ A+L+R VD E V+ FE+PYV+AIK LW DPGIQECYDRRREYQL+DS KYYL +
Sbjct: 98 EHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 157
Query: 138 IDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
+DRVA P+YLPT+QD+LRVRVPTTGIIEYPFDL+ + FRMVDVGGQRSERRKWIHC
Sbjct: 158 LDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC---- 213
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
FENVTSI+FLVALSEYDQ+L ES+NENRMEESKALF+TIITY
Sbjct: 214 ------------------FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 255
Query: 258 PWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQR 317
PWFQ+S V + F N L + + + ++Y P + GPQR
Sbjct: 256 PWFQNSSV------------------ILFLNKKDLLEEKIMYSHLVDYF---PEYDGPQR 294
Query: 318 DAIAAREFILRM 329
DA AAREFIL+M
Sbjct: 295 DAQAAREFILKM 306
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 83/137 (60%), Gaps = 46/137 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDL----------------------- 402
YL DL R+ DP Y+PT+QD+LR R PTTGIIEYPFDL
Sbjct: 154 YLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC 213
Query: 403 -----------------------DGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
D NRMEESKALF+TIITYPWFQ+SSVILFLNKKDLL
Sbjct: 214 FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 273
Query: 440 EEKIMYSHLVDYFPEYD 456
EEKIMYSHLVDYFPEYD
Sbjct: 274 EEKIMYSHLVDYFPEYD 290
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 228/312 (73%), Gaps = 43/312 (13%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+GTGESGKSTFIKQMRIIHGSGYSDEDKRGF KLVYQNIF AMQ+MIRAMD LKI Y
Sbjct: 40 LLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKY 99
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLME 137
+ A+L+R VD E V+ FE+PYV+AIK LW DPGIQECYDRRREYQL+DS KYYL +
Sbjct: 100 EHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 159
Query: 138 IDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
+DRVA P+YLPT+QD+LRVRVPTTGIIEYPFDL+ + FRMVDVGGQRSERRKWIHC
Sbjct: 160 LDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC---- 215
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
FENVTSI+FLVALSEYDQ+L ES+NENRMEESKALF+TIITY
Sbjct: 216 ------------------FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 257
Query: 258 PWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQR 317
PWFQ+S V + F N L + + + ++Y P + GPQR
Sbjct: 258 PWFQNSSV------------------ILFLNKKDLLEEKIMYSHLVDYF---PEYDGPQR 296
Query: 318 DAIAAREFILRM 329
DA AAREFIL+M
Sbjct: 297 DAQAAREFILKM 308
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 83/137 (60%), Gaps = 46/137 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDL----------------------- 402
YL DL R+ DP Y+PT+QD+LR R PTTGIIEYPFDL
Sbjct: 156 YLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC 215
Query: 403 -----------------------DGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
D NRMEESKALF+TIITYPWFQ+SSVILFLNKKDLL
Sbjct: 216 FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 275
Query: 440 EEKIMYSHLVDYFPEYD 456
EEKIMYSHLVDYFPEYD
Sbjct: 276 EEKIMYSHLVDYFPEYD 292
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 228/312 (73%), Gaps = 43/312 (13%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+GTGESGKSTFIKQMRIIHGSGYSDEDKRGF KLVYQNIF AMQ+MIRAMD LKI Y
Sbjct: 12 LLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKY 71
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLME 137
+ A+L+R VD E V+ FE+PYV+AIK LW DPGIQECYDRRREYQL+DS KYYL +
Sbjct: 72 EHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 131
Query: 138 IDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
+DRVA P+YLPT+QD+LRVRVPTTGIIEYPFDL+ + FRMVDVGGQRSERRKWIHC
Sbjct: 132 LDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC---- 187
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
FENVTSI+FLVALSEYDQ+L ES+NENRMEESKALF+TIITY
Sbjct: 188 ------------------FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229
Query: 258 PWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQR 317
PWFQ+S V + F N L + + + ++Y P + GPQR
Sbjct: 230 PWFQNSSV------------------ILFLNKKDLLEEKIMYSHLVDYF---PEYDGPQR 268
Query: 318 DAIAAREFILRM 329
DA AAREFIL+M
Sbjct: 269 DAQAAREFILKM 280
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 83/137 (60%), Gaps = 46/137 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDL----------------------- 402
YL DL R+ DP Y+PT+QD+LR R PTTGIIEYPFDL
Sbjct: 128 YLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC 187
Query: 403 -----------------------DGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
D NRMEESKALF+TIITYPWFQ+SSVILFLNKKDLL
Sbjct: 188 FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247
Query: 440 EEKIMYSHLVDYFPEYD 456
EEKIMYSHLVDYFPEYD
Sbjct: 248 EEKIMYSHLVDYFPEYD 264
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/312 (62%), Positives = 223/312 (71%), Gaps = 43/312 (13%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+GTGESGKSTFIKQMRIIHGSGYSDEDKRGF KLVYQNIF AMQ+MIRAMD LKI Y
Sbjct: 32 LLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKY 91
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLME 137
+ A+L+R VD E V+ F+ P AIK LW DPGIQECYDRRREYQL+DS KYYL +
Sbjct: 92 EHNKAHAQLVREVDVEKVSAFDVPDYAAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 151
Query: 138 IDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
+DRVA P+YLPT+QD+LRV VPTTGIIEYPFDL+ + FRMVDVGGQRSERRKWIHC
Sbjct: 152 LDRVADPSYLPTQQDVLRVCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC---- 207
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
FENVTSI+FLVALSEYDQ+L ES+NENRMEESKALF+TIITY
Sbjct: 208 ------------------FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 249
Query: 258 PWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQR 317
PWFQ+S V + F N L + + + ++Y P + GPQR
Sbjct: 250 PWFQNSSV------------------ILFLNKKDLLEEKIMYSHLVDYF---PEYDGPQR 288
Query: 318 DAIAAREFILRM 329
DA AAREFIL+M
Sbjct: 289 DAQAAREFILKM 300
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 82/137 (59%), Gaps = 46/137 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDL----------------------- 402
YL DL R+ DP Y+PT+QD+LR PTTGIIEYPFDL
Sbjct: 148 YLNDLDRVADPSYLPTQQDVLRVCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC 207
Query: 403 -----------------------DGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
D NRMEESKALF+TIITYPWFQ+SSVILFLNKKDLL
Sbjct: 208 FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 267
Query: 440 EEKIMYSHLVDYFPEYD 456
EEKIMYSHLVDYFPEYD
Sbjct: 268 EEKIMYSHLVDYFPEYD 284
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 163/273 (59%), Gaps = 31/273 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH G+S ED + + +VY N ++ +++RAMD L ++Y D
Sbjct: 17 LLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGVEYGD 76
Query: 78 PTCEEKAELIRSV--DFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYL 135
+ ++++ V E F + + A+ LW D GIQEC++R REYQL DSAKYYL
Sbjct: 77 KERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYL 136
Query: 136 MEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFE 195
+DR+ A +Y PTEQDILR RV TTGI+E F + + FR+ DVGGQRSER+KWIHC
Sbjct: 137 DSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHC-- 194
Query: 196 NVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
FE+VT+IIF VALS YDQ+L E E NRM ES LF +I
Sbjct: 195 --------------------FEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSIC 234
Query: 256 TYPWFQHSMV-------DVGGQRSERRKWIHCF 281
+F + + D+ G++ ++ CF
Sbjct: 235 NNKFFIDTSIILFLNKKDLFGEKIKKSPLTICF 267
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 57/136 (41%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL L RI Y PTEQDILR R TTGI+E F D+ G
Sbjct: 135 YLDSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHC 194
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
NRM ES LF +I +F +S+ILFLNKKDL
Sbjct: 195 FEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLF 254
Query: 440 EEKIMYSHLVDYFPEY 455
EKI S L FPEY
Sbjct: 255 GEKIKKSPLTICFPEY 270
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQ 295
++ + +T T+ + DVGGQRSER+KWIHCFE+VT FC ++ + Q
Sbjct: 160 KTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQ 212
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/253 (46%), Positives = 157/253 (62%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 37 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 96
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+A+ R + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 97 AA---RADDARQL-FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 152
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RVPTTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 153 YYLNDLDRIAQPNYIPTQQDVLRTRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 212
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
C FE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 213 C----------------------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 251 SICNNKWFTDTSI 263
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 63/136 (46%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R PTTGI+E F D+ G
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 213
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 274 EEKIKKSPLTICYPEY 289
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
+ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 233
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 156/253 (61%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 37 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 96
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+A+ R + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 97 AA---RADDARQL-FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 152
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 153 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 212
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
C FE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 213 C----------------------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 251 SICNNKWFTDTSI 263
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 213
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 274 EEKIKKSPLTICYPEY 289
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 233
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 44 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 103
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 104 AARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 159
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 160 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 219
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
C FE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 220 C----------------------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 257
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 258 SICNNKWFTDTSI 270
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 161 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 220
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 221 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 280
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 281 EEKIKKSPLTICYPEY 296
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 186 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 240
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 11 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 70
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 71 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 126
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 127 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 186
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 187 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 224
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 225 SICNNKWFTDTSI 237
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 128 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 187
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 188 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 247
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 248 EEKIKKSPLTICYPEY 263
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 153 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 207
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 40 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 99
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 100 AARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 155
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 156 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 215
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
C FE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 216 C----------------------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 253
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 254 SICNNKWFTDTSI 266
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 157 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 216
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 217 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 276
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 277 EEKIKKSPLTICYPEY 292
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 182 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 236
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 9 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 68
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 69 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 124
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 125 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 184
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 185 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 222
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 223 SICNNKWFTDTSI 235
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 126 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 185
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 186 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 245
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 246 EEKIKKSPLTICYPEY 261
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 151 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 205
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 13 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 72
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 73 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 128
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 129 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 188
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 189 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 226
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 227 SICNNKWFTDTSI 239
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 130 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 189
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 190 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 249
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 250 EEKIKKSPLTICYPEY 265
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 155 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 209
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 14 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 73
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 74 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 129
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 130 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 189
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 190 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 227
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 228 SICNNKWFTDTSI 240
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 131 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 190
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 191 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 250
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 251 EEKIKKSPLTICYPEY 266
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 156 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 210
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 8 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 67
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 68 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 123
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 124 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 183
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 184 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 221
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 222 SICNNKWFTDTSI 234
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 125 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 184
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 185 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 244
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 245 EEKIKKSPLTICYPEY 260
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 150 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 204
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 7 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 66
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 67 AARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 122
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 123 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 182
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 183 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 220
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 221 SICNNKWFTDTSI 233
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 124 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 183
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 184 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 243
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 244 EEKIKKSPLTICYPEY 259
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 149 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 203
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 7 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 66
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 67 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 122
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 123 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 182
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 183 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 220
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 221 SICNNKWFTDTSI 233
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 124 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 183
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 184 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 243
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 244 EEKIKKSPLTICYPEY 259
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 149 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 203
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 228 bits (580), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 6 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 65
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 66 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 121
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 122 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 181
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 182 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 219
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 220 SICNNKWFTDTSI 232
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 123 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 182
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 183 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 242
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 243 EEKIKKSPLTICYPEY 258
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 148 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 202
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 228 bits (580), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 116/249 (46%), Positives = 150/249 (60%), Gaps = 23/249 (9%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH GYS E+ FI ++Y N ++ +++RAM L IQY D
Sbjct: 9 LLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGD 68
Query: 78 PTCEEKA-ELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLM 136
++ A +L+ D T + I+ LW D GIQ C+DR EYQL DSA YYL
Sbjct: 69 SARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLS 128
Query: 137 EIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+++R+ P Y+PTEQD+LR RV TTGIIE F +++ FRM DVGGQRSER+KWIH
Sbjct: 129 DLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIH---- 184
Query: 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIIT 256
CFE VT+IIF VALS+YD +L E E NRM ES LF +I
Sbjct: 185 ------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 226
Query: 257 YPWFQHSMV 265
WF + +
Sbjct: 227 NKWFTDTSI 235
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 64/136 (47%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL R+ PGY+PTEQD+LR+R TTGIIE F D+ G
Sbjct: 126 YLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHC 185
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 186 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 245
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 246 EEKIKKSPLTICYPEY 261
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T ++ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 151 KTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 205
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 155/253 (61%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+I H +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 38 LLGAGESGKSTIVKQMKICHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 97
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+A+ R + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 98 AA---RADDARQL-FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 153
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 154 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 213
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 214 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 251
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 252 SICNNKWFTDTSI 264
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 155 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 214
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 215 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 274
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 275 EEKIKKSPLTICYPEY 290
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 234
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 155/253 (61%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 38 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 97
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+A+ R + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 98 SA---RADDARQL-FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 153
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DV GQRSER+KWIH
Sbjct: 154 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIH 213
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 214 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 251
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 252 SICNNKWFTDTSI 264
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 155 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHC 214
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 215 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 274
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 275 EEKIKKSPLTICYPEY 290
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DV GQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 234
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 155/253 (61%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 37 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 96
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+A+ R + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 97 AA---RADDARQL-FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 152
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVG QRSER+KWIH
Sbjct: 153 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIH 212
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
C FE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 213 C----------------------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 251 SICNNKWFTDTSI 263
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF------------------------- 400
YL DL RI P Y+PT+QD+LR R TTGI+E F
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHC 213
Query: 401 ----------------DL-----DGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
DL + +NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 274 EEKIKKSPLTICYPEY 289
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVG QRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 233
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 226 bits (575), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 155/253 (61%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 37 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 96
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+A+ R + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 97 AA---RADDARQL-FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 152
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGG RSER+KWIH
Sbjct: 153 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIH 212
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
C FE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 213 C----------------------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 251 SICNNKWFTDTSI 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDGI---------- 405
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G+
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHC 213
Query: 406 --------------------------NRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 274 EEKIKKSPLTICYPEY 289
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGG RSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 233
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 153/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 12 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 71
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REY L DSA
Sbjct: 72 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYLLNDSAA 127
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 128 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 187
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 188 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 225
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 226 SICNNKWFTDTSI 238
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 129 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 188
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 189 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 248
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 249 EEKIKKSPLTICYPEY 264
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 154 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 208
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 155/253 (61%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G ESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 37 LLGAVESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 96
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+A+ R + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 97 AA---RADDARQL-FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 152
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 153 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 212
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 213 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 251 SICNNKWFTDTSI 263
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 213
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 274 EEKIKKSPLTICYPEY 289
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 233
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 153/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G ESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 12 LLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 71
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 72 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 127
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 128 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 187
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 188 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 225
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 226 SICNNKWFTDTSI 238
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 129 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 188
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 189 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 248
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 249 EEKIKKSPLTICYPEY 264
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 154 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 208
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 224 bits (572), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 153/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G ESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 9 LLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 68
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+ A + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 69 SARADDARQL----FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 124
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 125 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 184
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 185 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 222
Query: 253 TIITYPWFQHSMV 265
+I WF + +
Sbjct: 223 SICNNKWFTDTSI 235
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 126 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 185
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 186 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 245
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 246 EEKIKKSPLTICYPEY 261
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 151 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 205
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 224 bits (571), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 149/249 (59%), Gaps = 23/249 (9%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH YS E+ FI ++Y N ++ +++RAM L IQY D
Sbjct: 40 LLGAGESGKSTIVKQMKIIHQDPYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGD 99
Query: 78 PTCEEKA-ELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLM 136
++ A +L+ D T + I+ LW D GIQ C+DR EYQL DSA YYL
Sbjct: 100 SARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLS 159
Query: 137 EIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+++R+ P Y+PTEQD+LR RV TTGIIE F +++ FRM DVGGQRSER+KWIHC
Sbjct: 160 DLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHC--- 216
Query: 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIIT 256
FE VT+IIF VALS+YD +L E E NRM ES LF +I
Sbjct: 217 -------------------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICN 257
Query: 257 YPWFQHSMV 265
WF + +
Sbjct: 258 NKWFTDTSI 266
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 64/136 (47%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL R+ PGY+PTEQD+LR+R TTGIIE F D+ G
Sbjct: 157 YLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHC 216
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 217 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLF 276
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 277 EEKIKKSPLTICYPEY 292
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T ++ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 182 KTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 236
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 157/272 (57%), Gaps = 30/272 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH GYS E+ FI ++Y N ++ +++RAM L IQY D
Sbjct: 8 LLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGD 67
Query: 78 PTCEEKA-ELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLM 136
++ A +L+ D T + I+ LW D GIQ C+DR EYQL DSA YYL
Sbjct: 68 SARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLS 127
Query: 137 EIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+++R+ P Y+PTEQD+LR RV TTGIIE F +++ FRM DVGGQRSER+KWIH
Sbjct: 128 DLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIH---- 183
Query: 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIIT 256
CFE VT IIF+ ALS YD +L E + NRM ES LF +I
Sbjct: 184 ------------------CFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICN 225
Query: 257 YPWFQHSMV-------DVGGQRSERRKWIHCF 281
+ +F + + DV ++ ++ CF
Sbjct: 226 HRYFATTSIVLFLNKKDVFSEKIKKAHLSICF 257
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 64/137 (46%), Gaps = 46/137 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDL----------------------- 402
YL DL R+ PGY+PTEQD+LR+R TTGIIE F
Sbjct: 125 YLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHC 184
Query: 403 -----------------------DGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
D +NRM ES LF +I + +F +S++LFLNKKD+
Sbjct: 185 FEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDVF 244
Query: 440 EEKIMYSHLVDYFPEYD 456
EKI +HL FP+Y+
Sbjct: 245 SEKIKKAHLSICFPDYN 261
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVIL 300
++ + +T ++ M DVGGQRSER+KWIHCFE VT + S Y+++L
Sbjct: 150 KTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVL 204
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 154/253 (60%), Gaps = 31/253 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 38 LLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 97
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEA-----IKELWADPGIQECYDRRREYQLTDSAK 132
+A+ R + F E ++ A IK LW D G+Q C++R REYQL DSA
Sbjct: 98 SA---RADDARQL-FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAA 153
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
YYL ++DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+M DV GQRSER+KWIH
Sbjct: 154 YYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIH 213
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CFE VT+IIF VALS+YD +L E E NRM ES LF
Sbjct: 214 ----------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 251
Query: 253 TIITYPWFQHSMV 265
+I F + +
Sbjct: 252 SICNNKCFTDTSI 264
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI P Y+PT+QD+LR R TTGI+E F D+DG
Sbjct: 155 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHC 214
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I F +S+ILFLNKKDL
Sbjct: 215 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLF 274
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 275 EEKIKKSPLTICYPEY 290
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DV GQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 234
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 218 bits (556), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 166/289 (57%), Gaps = 34/289 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH GYS+++ + + +VY N ++ ++IRAM LKI + +
Sbjct: 37 LLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGE 96
Query: 78 PTCEEKAE---LIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYY 134
+ A ++ E V T E V IK LW D G+Q C+ R REYQL DSA YY
Sbjct: 97 AARADDARQLFVLAGSAEEGVMTPELAGV--IKRLWRDGGVQACFSRSREYQLNDSASYY 154
Query: 135 LMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCF 194
L ++DR++ NY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIHC
Sbjct: 155 LNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC- 213
Query: 195 ENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTI 254
FE VT+IIF VALS+YD +L E E NRM ES LF +I
Sbjct: 214 ---------------------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252
Query: 255 ITYPWFQHSMV-------DVGGQRSERRKWIHCFENVTFCNSVQLFSQY 296
WF + + D+ ++ +R C+ T N+ + + Y
Sbjct: 253 CNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGSNTYEEAAAY 301
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 61/136 (44%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 154 YLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC 213
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLF 273
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 274 EEKIKRSPLTICYPEY 289
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 179 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 233
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/249 (44%), Positives = 145/249 (58%), Gaps = 23/249 (9%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQ +IIH GYS E+ FI ++Y N ++ +++RA L IQY D
Sbjct: 34 LLGAGESGKSTIVKQXKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAXTTLNIQYGD 93
Query: 78 PTCEEKA-ELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLM 136
++ A +L D T + I+ LW D GIQ C+DR EYQL DSA YYL
Sbjct: 94 SARQDDARKLXHXADTIEEGTXPKEXSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLS 153
Query: 137 EIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+++R+ P Y+PTEQD+LR RV TTGIIE F +++ FR DVGGQRSER+KWIHC
Sbjct: 154 DLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHC--- 210
Query: 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIIT 256
FE VT+IIF VALS+YD +L E E NR ES LF +I
Sbjct: 211 -------------------FEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLFDSICN 251
Query: 257 YPWFQHSMV 265
WF + +
Sbjct: 252 NKWFTDTSI 260
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 62/136 (45%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL R+ PGY+PTEQD+LR+R TTGIIE F D+ G
Sbjct: 151 YLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHC 210
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
NR ES LF +I WF +S+ILFLNKKDL
Sbjct: 211 FEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLF 270
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 271 EEKIKKSPLTICYPEY 286
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T ++ DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 176 KTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 230
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 166/289 (57%), Gaps = 34/289 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH GYS+++ + + +VY N ++ ++IRAM LKI + +
Sbjct: 14 LLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGE 73
Query: 78 PTCEEKAE---LIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYY 134
+ A ++ E V T E V IK LW D G+Q C+ R REYQL DSA YY
Sbjct: 74 AARADDARQLFVLAGSAEEGVMTPELAGV--IKRLWRDGGVQACFSRSREYQLNDSASYY 131
Query: 135 LMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCF 194
L ++DR++ NY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 132 LNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIH-- 189
Query: 195 ENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTI 254
CFE VT+IIF VALS+YD +L E E NRM ES LF +I
Sbjct: 190 --------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 229
Query: 255 ITYPWFQHSMV-------DVGGQRSERRKWIHCFENVTFCNSVQLFSQY 296
WF + + D+ ++ +R C+ T N+ + + Y
Sbjct: 230 CNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGSNTYEEAAAY 278
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 61/136 (44%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 131 YLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC 190
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 191 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLF 250
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 251 EEKIKRSPLTICYPEY 266
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 156 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 210
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 166/289 (57%), Gaps = 34/289 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH GYS+++ + + +VY N ++ ++IRAM LKI + +
Sbjct: 7 LLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGE 66
Query: 78 PTCEEKAE---LIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYY 134
+ A ++ E V T E V IK LW D G+Q C+ R REYQL DSA YY
Sbjct: 67 AARADDARQLFVLAGSAEEGVMTPELAGV--IKRLWRDGGVQACFSRSREYQLNDSASYY 124
Query: 135 LMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCF 194
L ++DR++ NY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 125 LNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIH-- 182
Query: 195 ENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTI 254
CFE VT+IIF VALS+YD +L E E NRM ES LF +I
Sbjct: 183 --------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 222
Query: 255 ITYPWFQHSMV-------DVGGQRSERRKWIHCFENVTFCNSVQLFSQY 296
WF + + D+ ++ +R C+ T N+ + + Y
Sbjct: 223 CNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGSNTYEEAAAY 271
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 61/136 (44%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 124 YLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC 183
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 184 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLF 243
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 244 EEKIKRSPLTICYPEY 259
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 149 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 203
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 214 bits (546), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 165/289 (57%), Gaps = 34/289 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST +KQM+IIH GYS+++ + + +VY N ++ ++IRAM LKI + +
Sbjct: 14 LLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGE 73
Query: 78 PTCEEKAE---LIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYY 134
+ A ++ E V T E V IK LW D G+Q C+ R REY L DSA YY
Sbjct: 74 AARADDARQLFVLAGSAEEGVMTPELAGV--IKRLWRDGGVQACFSRSREYLLNDSASYY 131
Query: 135 LMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCF 194
L ++DR++ NY+PT+QD+LR RV TTGI+E F +++ F+M DVGGQRSER+KWIH
Sbjct: 132 LNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIH-- 189
Query: 195 ENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTI 254
CFE VT+IIF VALS+YD +L E E NRM ES LF +I
Sbjct: 190 --------------------CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 229
Query: 255 ITYPWFQHSMV-------DVGGQRSERRKWIHCFENVTFCNSVQLFSQY 296
WF + + D+ ++ +R C+ T N+ + + Y
Sbjct: 230 CNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGSNTYEEAAAY 278
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 61/136 (44%), Gaps = 46/136 (33%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----------DLDG----------- 404
YL DL RI Y+PT+QD+LR R TTGI+E F D+ G
Sbjct: 131 YLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC 190
Query: 405 -------------------------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
+NRM ES LF +I WF +S+ILFLNKKDL
Sbjct: 191 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLF 250
Query: 440 EEKIMYSHLVDYFPEY 455
EEKI S L +PEY
Sbjct: 251 EEKIKRSPLTICYPEY 266
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQYNVIL 300
++ + +T T+ M DVGGQRSER+KWIHCFE VT FC ++ S Y+++L
Sbjct: 156 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL---SDYDLVL 210
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 141/256 (55%), Gaps = 30/256 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKSTF+KQMRIIHG + + F +Y N+ M+ ++ A + L I + D
Sbjct: 17 LLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGD 76
Query: 78 PTCEEKAELIRSVDFETVTTFES--------PYVEAIKELWADPGIQECYDRRREYQLTD 129
+ + + + D + Y+ AI+ LW D GIQ YDRRRE+QL +
Sbjct: 77 NKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGE 136
Query: 130 SAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRK 189
S KY+L +D++ P+Y+P++QDIL R PT GI E F +++ F+M DVGGQRSER+K
Sbjct: 137 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKK 196
Query: 190 WIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA 249
W C FE VT+IIF VALS+YDQ+L E NRM ES
Sbjct: 197 WFEC----------------------FEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMK 234
Query: 250 LFKTIITYPWFQHSMV 265
LF +I WF + +
Sbjct: 235 LFDSICNNKWFTDTSI 250
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 74/162 (45%), Gaps = 53/162 (32%)
Query: 340 VHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYP 399
+ +A RR + LGE+ V++ +L +L ++ P Y+P++QDIL AR+PT GI E
Sbjct: 122 IQNAYDRRREFQLGES------VKY-FLDNLDKLGVPDYIPSQQDILLARRPTKGIHETH 174
Query: 400 F----------DLDG------------------------------------INRMEESKA 413
F D+ G NRM ES
Sbjct: 175 FTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMK 234
Query: 414 LFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEY 455
LF +I WF +S+ILFLNKKDL EEKI S L +PEY
Sbjct: 235 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEY 276
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQ 295
+K + +T T+ M DVGGQRSER+KW CFE VT FC ++ + Q
Sbjct: 167 TKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQ 218
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 147/253 (58%), Gaps = 30/253 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKSTF+KQMRIIHG + + F +Y N+ M+ ++ A + L I + D
Sbjct: 38 LLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGD 97
Query: 78 PTCEEKAELIRSVDFETVTTFES--------PYVEAIKELWADPGIQECYDRRREYQLTD 129
+ + + + D + Y+ AI+ LW D GIQ YDRRRE+QL +
Sbjct: 98 NKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGE 157
Query: 130 SAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRK 189
S KY+L +D++ P+Y+P++QDIL R PT GI EY F+++ + F+MVDVGGQRSER++
Sbjct: 158 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKR 217
Query: 190 WIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA 249
W FE CF++VTSI+FLV+ SE+DQ+L E NR+ ES
Sbjct: 218 W---FE-------------------CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255
Query: 250 LFKTIITYPWFQH 262
+F+TI+ F +
Sbjct: 256 IFETIVNNRVFSN 268
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 53/163 (32%)
Query: 340 VHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYP 399
+ +A RR + LGE+ V++ +L +L ++ P Y+P++QDIL AR+PT GI EY
Sbjct: 143 IQNAYDRRREFQLGES------VKY-FLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYD 195
Query: 400 FDLDGI----------------------------------------------NRMEESKA 413
F++ + NR+ ES
Sbjct: 196 FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255
Query: 414 LFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 456
+F+TI+ F + S+ILFLNK DLLEEK+ + DYF E++
Sbjct: 256 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFE 298
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 263 SMVDVGGQRSERRKWIHCFENVT 285
MVDVGGQRSER++W CF++VT
Sbjct: 204 KMVDVGGQRSERKRWFECFDSVT 226
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 147/253 (58%), Gaps = 30/253 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKSTF+KQMRIIHG + + F +Y N+ M+ ++ A + L I + D
Sbjct: 14 LLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGD 73
Query: 78 PTCEEKAELIRSVDFETVTTFES--------PYVEAIKELWADPGIQECYDRRREYQLTD 129
+ + + + D + Y+ AI+ LW D GIQ YDRRRE+QL +
Sbjct: 74 NKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGE 133
Query: 130 SAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRK 189
S KY+L +D++ P+Y+P++QDIL R PT GI EY F+++ + F+MVDVGGQRSER++
Sbjct: 134 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKR 193
Query: 190 WIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA 249
W FE CF++VTSI+FLV+ SE+DQ+L E NR+ ES
Sbjct: 194 W---FE-------------------CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 250 LFKTIITYPWFQH 262
+F+TI+ F +
Sbjct: 232 IFETIVNNRVFSN 244
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 53/163 (32%)
Query: 340 VHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYP 399
+ +A RR + LGE+ V++ +L +L ++ P Y+P++QDIL AR+PT GI EY
Sbjct: 119 IQNAYDRRREFQLGES------VKY-FLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYD 171
Query: 400 FDLDGI----------------------------------------------NRMEESKA 413
F++ + NR+ ES
Sbjct: 172 FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 414 LFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 456
+F+TI+ F + S+ILFLNK DLLEEK+ + DYF E++
Sbjct: 232 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFE 274
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 263 SMVDVGGQRSERRKWIHCFENVT 285
MVDVGGQRSER++W CF++VT
Sbjct: 180 KMVDVGGQRSERKRWFECFDSVT 202
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 146/253 (57%), Gaps = 30/253 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKSTF+KQMRIIHG + + F +Y N+ M+ ++ A + L I + D
Sbjct: 14 LLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGD 73
Query: 78 PTCEEKAELIRSVDFETVTTFES--------PYVEAIKELWADPGIQECYDRRREYQLTD 129
+ + + + D + Y+ AI+ LW D GIQ YDRRRE+QL +
Sbjct: 74 NKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGE 133
Query: 130 SAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRK 189
S KY+L +D++ P+Y+P++QDIL R PT GI EY F+++ + F+MVDVGG RSER++
Sbjct: 134 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKR 193
Query: 190 WIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA 249
W FE CF++VTSI+FLV+ SE+DQ+L E NR+ ES
Sbjct: 194 W---FE-------------------CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 250 LFKTIITYPWFQH 262
+F+TI+ F +
Sbjct: 232 IFETIVNNRVFSN 244
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 53/163 (32%)
Query: 340 VHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYP 399
+ +A RR + LGE+ V++ +L +L ++ P Y+P++QDIL AR+PT GI EY
Sbjct: 119 IQNAYDRRREFQLGES------VKY-FLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYD 171
Query: 400 FDLDGI----------------------------------------------NRMEESKA 413
F++ + NR+ ES
Sbjct: 172 FEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 414 LFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 456
+F+TI+ F + S+ILFLNK DLLEEK+ + DYF E++
Sbjct: 232 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFE 274
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 263 SMVDVGGQRSERRKWIHCFENVT 285
MVDVGG RSER++W CF++VT
Sbjct: 180 KMVDVGGLRSERKRWFECFDSVT 202
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 138/247 (55%), Gaps = 26/247 (10%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKSTF+KQMRIIHG + + F ++ NI + ++ A D L I +
Sbjct: 40 LLGAGESGKSTFLKQMRIIHGREFDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQH 99
Query: 78 PTCEEKAELIRSVDFETVTTFESP----YVEAIKELWADPGIQECYDRRREYQLTDSAKY 133
E+ + + + + E YV A+ LW D GI+E + RR E+QL +S KY
Sbjct: 100 SENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKY 159
Query: 134 YLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHC 193
+L +DR+ NY P++QDIL R T GI+E+ F +++I F+MVDVGGQRS+R+KW
Sbjct: 160 FLDNLDRIGQLNYFPSKQDILLARKATKGIVEHDFVIKKIPFKMVDVGGQRSQRQKW--- 216
Query: 194 FENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKT 253
CF+ +TSI+F+V+ SEYDQ+L E NR+ ES +F+T
Sbjct: 217 -------------------FQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFET 257
Query: 254 IITYPWF 260
I+ F
Sbjct: 258 IVNNKLF 264
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 53/166 (31%)
Query: 336 RSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGI 395
R + + A RR + LGE+ V++ +L +L RI Y P++QDIL AR+ T GI
Sbjct: 137 RDSGIREAFSRRSEFQLGES------VKY-FLDNLDRIGQLNYFPSKQDILLARKATKGI 189
Query: 396 IEY-------PFDL-----------------DGI----------------------NRME 409
+E+ PF + DGI NR+
Sbjct: 190 VEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLV 249
Query: 410 ESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEY 455
ES +F+TI+ F + S+ILFLNK DLL EK+ + +FP++
Sbjct: 250 ESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKSVSIKKHFPDF 295
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 263 SMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVIL 300
MVDVGGQRS+R+KW CF+ +T + S+Y+ +L
Sbjct: 202 KMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVL 239
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 148/249 (59%), Gaps = 29/249 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYS-DEDKRGFIKLVYQNIFMAMQSMIRAMDLL--KIQ 74
+G GESGKST +KQMRI+H +G++ D +K ++ + N+ A+++++ AM L ++
Sbjct: 45 LLGAGESGKSTIVKQMRILHVNGFNGDSEKATKVQDIKNNLKEAIETIVAAMSNLVPPVE 104
Query: 75 YADPTCEEKAELIRSVDFETVTTFESP--YVEAIKELWADPGIQECYDRRREYQLTDSAK 132
A+P + + + I SV V F+ P + E K LW D G++ CY+R EYQL D A+
Sbjct: 105 LANPENQFRVDYILSV--MNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQ 162
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
Y+L +ID + +Y+P++QD+LR RV T+GI E F ++++ F M DVGGQR ERRKWI
Sbjct: 163 YFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWI- 221
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CF +VT+IIF+VA S Y+ ++ E NR++E+ LFK
Sbjct: 222 ---------------------QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFK 260
Query: 253 TIITYPWFQ 261
+I W +
Sbjct: 261 SIWNNRWLR 269
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 48/138 (34%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGIN------------------- 406
+L + I+ Y+P++QD+LR R T+GI E F +D +N
Sbjct: 164 FLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC 223
Query: 407 ---------------------------RMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
R++E+ LFK+I W + SVILFLNK+DLL
Sbjct: 224 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 283
Query: 440 EEKIMY--SHLVDYFPEY 455
EK++ S + DYFPE+
Sbjct: 284 AEKVLAGKSKIEDYFPEF 301
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYT 306
+ +F+T M DVGGQR ERRKWI CF +VT V S YN+++ N T
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 249
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 148/249 (59%), Gaps = 29/249 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYS-DEDKRGFIKLVYQNIFMAMQSMIRAMDLL--KIQ 74
+G GESGKST +KQMRI+H +G++ D +K ++ + N+ A+++++ AM L ++
Sbjct: 45 LLGAGESGKSTIVKQMRILHVNGFNGDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVE 104
Query: 75 YADPTCEEKAELIRSVDFETVTTFESP--YVEAIKELWADPGIQECYDRRREYQLTDSAK 132
A+P + + + I SV V F+ P + E K LW D G++ CY+R EYQL D A+
Sbjct: 105 LANPENQFRVDYILSV--MNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQ 162
Query: 133 YYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIH 192
Y+L +ID + +Y+P++QD+LR RV T+GI E F ++++ F M DVGGQR ERRKWI
Sbjct: 163 YFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWI- 221
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CF +VT+IIF+VA S Y+ ++ E NR++E+ LFK
Sbjct: 222 ---------------------QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFK 260
Query: 253 TIITYPWFQ 261
+I W +
Sbjct: 261 SIWNNRWLR 269
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 48/138 (34%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGIN------------------- 406
+L + I+ Y+P++QD+LR R T+GI E F +D +N
Sbjct: 164 FLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC 223
Query: 407 ---------------------------RMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
R++E+ LFK+I W + SVILFLNK+DLL
Sbjct: 224 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 283
Query: 440 EEKIMY--SHLVDYFPEY 455
EK++ S + DYFPE+
Sbjct: 284 AEKVLAGKSKIEDYFPEF 301
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYT 306
+ +F+T M DVGGQR ERRKWI CF +VT V S YN+++ N T
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 249
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 43/263 (16%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGY---------------SDEDKRGFIKLVYQNIFMAMQ 62
+G GESGKST +KQMRI+H +G+ SD +K ++ + N+ A++
Sbjct: 45 LLGAGESGKSTIVKQMRILHVNGFNGGEGGEEDPNAKSNSDGEKATKVQDIKNNLKEAIE 104
Query: 63 SMIRAMDLL--KIQYADPTCEEKAELIRSVDFETVTTFESP--YVEAIKELWADPGIQEC 118
+++ AM L ++ A+P + + + I SV V F+ P + E K LW D G++ C
Sbjct: 105 TIVAAMSNLVPPVELANPENQFRVDYILSV--MNVPDFDFPPEFYEHAKALWEDEGVRAC 162
Query: 119 YDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMV 178
Y+R EYQL D A+Y+L +ID + +Y+P++QD+LR RV T+GI E F ++++ F M
Sbjct: 163 YERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMF 222
Query: 179 DVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFES 238
DVGGQR ERRKWI CF +VT+IIF+VA S Y+ ++ E
Sbjct: 223 DVGGQRDERRKWI----------------------QCFNDVTAIIFVVASSSYNMVIRED 260
Query: 239 ENENRMEESKALFKTIITYPWFQ 261
NR++E+ LFK+I W +
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLR 283
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 48/138 (34%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGIN------------------- 406
+L + I+ Y+P++QD+LR R T+GI E F +D +N
Sbjct: 178 FLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC 237
Query: 407 ---------------------------RMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
R++E+ LFK+I W + SVILFLNK+DLL
Sbjct: 238 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297
Query: 440 EEKIMY--SHLVDYFPEY 455
EK++ S + DYFPE+
Sbjct: 298 AEKVLAGKSKIEDYFPEF 315
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYT 306
+ +F+T M DVGGQR ERRKWI CF +VT V S YN+++ N T
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 43/263 (16%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGY---------------SDEDKRGFIKLVYQNIFMAMQ 62
+G GESGKST +KQMRI+H +G+ SD +K ++ + N+ A++
Sbjct: 45 LLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIE 104
Query: 63 SMIRAMDLL--KIQYADPTCEEKAELIRSVDFETVTTFESP--YVEAIKELWADPGIQEC 118
+++ AM L ++ A+P + + + I SV V F+ P + E K LW D G++ C
Sbjct: 105 TIVAAMSNLVPPVELANPENQFRVDYILSV--MNVPDFDFPPEFYEHAKALWEDEGVRAC 162
Query: 119 YDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMV 178
Y+R EYQL D A+Y+L +ID + +Y+P++QD+LR RV T+GI E F ++++ F M
Sbjct: 163 YERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMF 222
Query: 179 DVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFES 238
DVGGQR ERRKWI CF +VT+IIF+VA S Y+ ++ E
Sbjct: 223 DVGGQRDERRKWI----------------------QCFNDVTAIIFVVASSSYNMVIRED 260
Query: 239 ENENRMEESKALFKTIITYPWFQ 261
NR++E+ LFK+I W +
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLR 283
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 48/138 (34%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGIN------------------- 406
+L + I+ Y+P++QD+LR R T+GI E F +D +N
Sbjct: 178 FLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC 237
Query: 407 ---------------------------RMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
R++E+ LFK+I W + SVILFLNK+DLL
Sbjct: 238 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297
Query: 440 EEKIMY--SHLVDYFPEY 455
EK++ S + DYFPE+
Sbjct: 298 AEKVLAGKSKIEDYFPEF 315
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYT 306
+ +F+T M DVGGQR ERRKWI CF +VT V S YN+++ N T
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 43/263 (16%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGY---------------SDEDKRGFIKLVYQNIFMAMQ 62
+G GESGKST +KQMRI+H +G+ SD +K ++ + N+ A++
Sbjct: 45 LLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIE 104
Query: 63 SMIRAMDLL--KIQYADPTCEEKAELIRSVDFETVTTFESP--YVEAIKELWADPGIQEC 118
+++ AM L ++ A+P + + + I SV V F+ P + E K LW D G++ C
Sbjct: 105 TIVAAMSNLVPPVELANPENQFRVDYILSV--MNVPDFDFPPEFYEHAKALWEDEGVRAC 162
Query: 119 YDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMV 178
Y+R EYQL D A+Y+L +ID + +Y+P++QD+LR RV T+GI E F ++++ F M
Sbjct: 163 YERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMF 222
Query: 179 DVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFES 238
DVGGQR ERRKWI CF +VT+IIF+VA S Y+ ++ E
Sbjct: 223 DVGGQRDERRKWI----------------------QCFNDVTAIIFVVASSSYNMVIRED 260
Query: 239 ENENRMEESKALFKTIITYPWFQ 261
NR++E+ LFK+I W +
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLR 283
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 48/138 (34%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGIN------------------- 406
+L + I+ Y+P++QD+LR R T+GI E F +D +N
Sbjct: 178 FLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC 237
Query: 407 ---------------------------RMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439
R++E+ LFK+I W + SVILFLNK+DLL
Sbjct: 238 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297
Query: 440 EEKIMY--SHLVDYFPEY 455
EK++ S + DYFPE+
Sbjct: 298 AEKVLAGKSKIEDYFPEF 315
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYT 306
+ +F+T M DVGGQR ERRKWI CF +VT V S YN+++ N T
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 169/346 (48%), Gaps = 64/346 (18%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKST KQ++++ +G+ + + + ++ +++ N++ ++ + D
Sbjct: 14 LLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETD 73
Query: 78 PT-----------CEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQ 126
E+ +E+ +D+ +T E I+ LW DP IQE R E Q
Sbjct: 74 SAKYMLSSESIAIGEKLSEIGGRLDYPRLT---KDIAEGIETLWKDPAIQETXARGNELQ 130
Query: 127 LTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSE 186
+ D KY + + R++ NY+PT++D+L RV TTG++E I+F V E
Sbjct: 131 VPDXTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVE-------IQFSPV------GE 177
Query: 187 RRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEE 246
+K + + DVGGQR+ERRKWIH FE VT++IF A+SEYDQ LFE E +NRM E
Sbjct: 178 NKKSGEVYR---LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME 234
Query: 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQ--YNVILN 301
+K LF ++ P CFE + F N +F + +V LN
Sbjct: 235 TKELFDWVLKQP---------------------CFEKTSFMLFLNKFDIFEKKVLDVPLN 273
Query: 302 -CMNYTIVPPLHTGPQRDAIAAREFI------LRMTSTGRDRSARV 340
C + P+ +G Q + A EF+ L +T DR RV
Sbjct: 274 VCEWFRDYQPVSSGKQ-EIEHAYEFVKKKFEELYYQNTAPDRVDRV 318
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 52/128 (40%)
Query: 369 DLARIEDPGYMPTEQDILRARQPTTGIIEYPFD--------------------------- 401
+L R+ D Y+PT++D+L AR TTG++E F
Sbjct: 141 NLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKW 200
Query: 402 ---LDGI----------------------NRMEESKALFKTIITYPWFQHSSVILFLNKK 436
+G+ NRM E+K LF ++ P F+ +S +LFLNK
Sbjct: 201 IHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260
Query: 437 DLLEEKIM 444
D+ E+K++
Sbjct: 261 DIFEKKVL 268
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 134/250 (53%), Gaps = 32/250 (12%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLK--IQY 75
+G+GESGKST KQ++I+ G G+ ++++ + N+ +++I +L +Y
Sbjct: 10 LLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCXRTLIEQSAILNHPXKY 69
Query: 76 ADPTCEEKAELIRSVDFETVTTFESP-YVEAIKELWADPGIQECYDRRREYQLTDSAKYY 134
+ E E + VT SP V ++ LWAD GIQ Y+ ++QL D AKY
Sbjct: 70 QPKSKEFTTE-------DPVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYL 122
Query: 135 LMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCF 194
+ R+A +Y+PTE+D++ R TTGI EY F +++I F ++DVGGQRSER+ W+ F
Sbjct: 123 FENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFF 182
Query: 195 ENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTI 254
+V IF+ +L+EYD L+E N +R+ ES A+FK I
Sbjct: 183 SDVDCA----------------------IFVTSLAEYDXKLYEDGNTSRLTESIAVFKDI 220
Query: 255 ITYPWFQHSM 264
T + + ++
Sbjct: 221 XTNEFLKGAV 230
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 46/133 (34%)
Query: 369 DLARIEDPGYMPTEQDILRARQPTTGIIEY-------PFDL------------------- 402
++ RI Y+PTE+D++ R TTGI EY PF L
Sbjct: 125 NVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSD 184
Query: 403 -------------------DG-INRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEK 442
DG +R+ ES A+FK I T + + + ++FLNK DL EEK
Sbjct: 185 VDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDLFEEK 244
Query: 443 IMYSHLVDYFPEY 455
+ L FPEY
Sbjct: 245 LTKVPLNTIFPEY 257
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 264 MVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVIL 300
++DVGGQRSER+ W+ F +V V ++Y+ L
Sbjct: 165 LIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKL 201
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRM 244
T+ DVGGQ R W H F+N +IF+V ++ D+++ + +RM
Sbjct: 67 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 113
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+PT G + + I F + DVGGQ R W H F+N
Sbjct: 49 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 87
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQI------LFESENENRMEES 247
T+ DVGGQ R W H ++N +IIF+V ++ D+I L + NE+ M +
Sbjct: 64 TVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNA 119
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMV 200
+PT G + + I F + DVGGQ R W H ++N +
Sbjct: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAI 88
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 193 CFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252
CF T+ DVGGQ R W H F+N +IF+V ++ +++ ++ +M + L
Sbjct: 74 CF---TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD 130
Query: 253 TII 255
++
Sbjct: 131 AVL 133
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+PT G + + I F + DVGGQ R W H F+N
Sbjct: 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN 96
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 22/98 (22%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFE 217
+PT G F++E + FR + + T+ DVGGQ R W H +
Sbjct: 46 IPTIG-----FNVETVEFRNI-----------------SFTVWDVGGQDKIRPLWRHYYS 83
Query: 218 NVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
N +IF+V ++ ++I E +RM + L II
Sbjct: 84 NTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAII 121
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 22/77 (28%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFE 217
+PT G F++E + ++ + CF T+ DVGGQ R W H F+
Sbjct: 46 IPTIG-----FNVETVEYKNI--------------CF---TVWDVGGQDRIRPLWKHYFQ 83
Query: 218 NVTSIIFLVALSEYDQI 234
N +IF+V ++ ++I
Sbjct: 84 NTQGLIFVVDSNDRERI 100
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKAL 250
T+ DVGGQ R W H F+N +IF+V ++ +++ NE R E + L
Sbjct: 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-----NEAREELMRML 94
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+PT G + + I F + DVGGQ R W H F+N
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 67
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKAL 250
T+ DVGGQ R W H F+N +IF+V ++ +++ NE R E + L
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-----NEAREELMRML 259
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
+PT G + + I F + DVGGQ R W H F+N
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 233
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKAL 250
T+ DVGGQ R W H F+N +IF+V ++ +++ NE R E + L
Sbjct: 63 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-----NEAREELMRML 110
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+PT G + + I F + DVGGQ R W H F+N
Sbjct: 45 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 83
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKAL 250
T+ DVGGQ R W H F+N +IF+V ++ +++ NE R E + L
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-----NEAREELMRML 111
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+PT G + + I F + DVGGQ R W H F+N
Sbjct: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENE 241
T D+GG RR W + + I+FLV ++++++L ES+ E
Sbjct: 69 TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLL-ESKEE 111
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENE 241
T D+GG RR W + + I+FLV ++++++L ES+ E
Sbjct: 72 TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLL-ESKEE 114
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENE 241
T D+GG RR W + + I+FLV ++++++L ES+ E
Sbjct: 63 TTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLL-ESKEE 105
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRM 244
T+ DVGGQ R W H + N +IF+V ++ +I E RM
Sbjct: 47 TVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRM 93
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMV 200
+PT G + I F + DVGGQ R W H + N V
Sbjct: 29 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGV 71
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 192 HCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRM 244
+C + T+ DVGGQ R W H + N +IF+V ++ +I E RM
Sbjct: 58 YCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRM 110
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRM 244
T+ DVGGQ R W H + N +IF+V ++ +I E RM
Sbjct: 64 TVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRM 110
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMV 200
+PT G + I F + DVGGQ R W H + N V
Sbjct: 46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGV 88
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 201 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQI 234
DVGGQ R W H + +IF+V ++ D+I
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI 405
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 201 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
DVGGQ R W H + +IF+V ++ D+I + +R+ + + II
Sbjct: 50 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
T D+GG RR W + + I+FLV +++ +R+ ESK ++T
Sbjct: 82 TTFDLGGHEQARRVWKNYLPAINGIVFLVDCADH----------SRLVESKVELNALMTD 131
Query: 258 PWFQHSMVDVGGQRSERRKWI 278
+ + + G + +R I
Sbjct: 132 ETISNVPILILGNKIDRTDAI 152
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 201 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
DVGGQ R W H + +IF+V ++ D+I + +R+ + + II
Sbjct: 50 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 159 PTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRK 211
PT G + RF M D+GGQ S R W + N V V ++R +
Sbjct: 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 98
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 159 PTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRK 211
PT G + RF M D+GGQ S R W + N V V ++R +
Sbjct: 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 98
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 201 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQI 234
DVGGQ R W H + +IF+V ++ D+I
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI 96
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 201 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQI 234
DVGGQ R W H + +IF+V ++ D+I
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI 95
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 159 PTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRK 211
PT G + RF M D+GGQ S R W + N V V ++R +
Sbjct: 51 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 103
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 194 FENV--TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQI 234
++NV + DVGGQ R W H + +IF+V ++ D+I
Sbjct: 41 YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI 83
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRM 244
T+ DVGGQ R W H + N +IF++ ++ +I E RM
Sbjct: 64 TVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRM 110
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMV 200
+PT G + I F + DVGGQ R W H + N V
Sbjct: 46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGV 88
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 159 PTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRK 211
PT G + RF M D+GGQ S R W + N V V ++R +
Sbjct: 52 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 104
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
+ + DVGGQ+S R W + FE+ +I++V +S + RM++ + ++++
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLL 112
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
+ + DVGGQ+S R W + FE+ +I++V +S + RM++ + ++++
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLL 112
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKAL 250
T+ DVGG R W H F+N +IF+V ++ +++ NE R E + L
Sbjct: 49 TVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERV-----NEAREELMRML 96
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+PT G + + I F + DVGG R W H F+N
Sbjct: 31 IPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQN 69
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLV 226
+ + DVGGQ+S R W + FE+ +I++V
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVV 93
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
+ + DVGGQ+S R W + FE+ +I++V +S + RM++ + ++++
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLL 110
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
T+ D+ GQ R W H ++ +IIF++ +S + RM +K T++ +
Sbjct: 70 TVFDMSGQGRYRNLWEHYYKEGQAIIFVI----------DSSDRLRMVVAKEELDTLLNH 119
Query: 258 PWFQHSMVDV 267
P +H + +
Sbjct: 120 PDIKHRRIPI 129
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 201 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
D+GGQ S R W + N ++I++V + D+I M E + L K I+
Sbjct: 52 DLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAIL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,743,468
Number of Sequences: 62578
Number of extensions: 554318
Number of successful extensions: 1554
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 306
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)