Query psy16468
Match_columns 463
No_of_seqs 341 out of 2171
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:06:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0085|consensus 100.0 2.1E-88 4.4E-93 636.6 12.0 300 9-351 35-335 (359)
2 KOG0082|consensus 100.0 2.7E-86 5.8E-91 667.0 23.4 298 10-351 30-330 (354)
3 cd00066 G-alpha G protein alph 100.0 9E-75 2E-79 586.5 25.8 295 14-351 1-297 (317)
4 smart00275 G_alpha G protein a 100.0 2.5E-74 5.5E-79 588.3 24.8 297 11-351 19-320 (342)
5 PF00503 G-alpha: G-protein al 100.0 3.6E-73 7.7E-78 589.9 22.8 297 11-350 56-375 (389)
6 KOG0099|consensus 100.0 4.6E-71 9.9E-76 526.7 16.0 299 12-351 39-355 (379)
7 KOG0082|consensus 100.0 9.6E-35 2.1E-39 293.3 8.8 128 319-462 125-298 (354)
8 KOG0085|consensus 100.0 1E-34 2.2E-39 273.9 -0.6 182 246-459 70-299 (359)
9 KOG0099|consensus 99.9 8.7E-29 1.9E-33 237.1 6.1 131 310-457 123-302 (379)
10 PF00503 G-alpha: G-protein al 99.9 2.5E-27 5.3E-32 246.5 5.8 108 354-461 183-341 (389)
11 smart00275 G_alpha G protein a 99.9 5.7E-26 1.2E-30 232.4 8.6 120 336-462 122-287 (342)
12 cd00066 G-alpha G protein alph 99.9 6.8E-26 1.5E-30 229.7 7.9 118 336-461 99-264 (317)
13 PF00025 Arf: ADP-ribosylation 99.7 4.5E-16 9.8E-21 144.5 13.2 87 158-294 43-129 (175)
14 KOG0070|consensus 99.7 1.1E-16 2.5E-21 147.4 8.0 86 158-293 46-131 (181)
15 KOG0074|consensus 99.6 4.3E-16 9.4E-21 137.5 9.1 86 159-294 47-133 (185)
16 KOG0073|consensus 99.6 4.6E-16 9.9E-21 140.6 9.3 120 159-330 46-177 (185)
17 KOG0071|consensus 99.5 7.7E-15 1.7E-19 129.5 6.9 88 158-295 46-133 (180)
18 PLN00223 ADP-ribosylation fact 99.4 3.2E-12 6.8E-17 119.3 13.0 105 198-330 64-177 (181)
19 smart00177 ARF ARF-like small 99.4 4.2E-12 9.2E-17 117.4 12.7 102 198-329 60-172 (175)
20 KOG0076|consensus 99.4 4.1E-13 8.9E-18 122.6 3.9 86 158-293 54-139 (197)
21 PTZ00133 ADP-ribosylation fact 99.3 2.5E-11 5.3E-16 113.3 12.8 105 198-330 64-177 (182)
22 smart00178 SAR Sar1p-like memb 99.3 3.3E-11 7.2E-16 112.4 12.7 68 198-293 64-131 (184)
23 cd04149 Arf6 Arf6 subfamily. 99.3 2.6E-11 5.6E-16 111.6 11.6 69 198-294 56-124 (168)
24 KOG0072|consensus 99.3 3.5E-12 7.5E-17 113.3 5.3 87 157-293 46-132 (182)
25 cd04150 Arf1_5_like Arf1-Arf5- 99.3 2E-11 4.4E-16 111.0 10.0 68 198-293 47-114 (159)
26 cd04161 Arl2l1_Arl13_like Arl2 99.2 3.6E-11 7.8E-16 110.3 10.6 70 198-295 46-115 (167)
27 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 8.5E-11 1.8E-15 108.4 11.4 69 198-294 62-130 (174)
28 cd04158 ARD1 ARD1 subfamily. 99.2 1.1E-10 2.3E-15 107.1 11.1 69 198-294 46-114 (169)
29 cd00879 Sar1 Sar1 subfamily. 99.2 1.3E-10 2.8E-15 108.1 11.1 68 198-293 66-133 (190)
30 cd04154 Arl2 Arl2 subfamily. 99.2 1.5E-10 3.2E-15 106.4 10.4 69 198-294 61-129 (173)
31 cd04160 Arfrp1 Arfrp1 subfamil 99.1 1.8E-10 4E-15 104.3 9.9 69 198-294 53-121 (167)
32 cd04155 Arl3 Arl3 subfamily. 99.1 6.8E-10 1.5E-14 101.3 11.7 69 198-294 61-129 (173)
33 cd04157 Arl6 Arl6 subfamily. 99.1 7.4E-10 1.6E-14 99.5 10.2 70 198-295 48-119 (162)
34 cd04151 Arl1 Arl1 subfamily. 99.1 7.2E-10 1.6E-14 100.0 10.1 69 198-294 46-114 (158)
35 cd04162 Arl9_Arfrp2_like Arl9/ 99.0 1.6E-09 3.6E-14 99.0 10.8 68 198-295 47-114 (164)
36 cd04175 Rap1 Rap1 subgroup. T 99.0 3E-09 6.5E-14 96.3 12.0 69 198-294 52-120 (164)
37 KOG0077|consensus 99.0 2.5E-10 5.3E-15 103.9 4.3 69 198-294 67-135 (193)
38 KOG0075|consensus 99.0 5.9E-10 1.3E-14 99.6 6.2 87 158-294 50-136 (186)
39 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 2.8E-09 6.1E-14 99.2 10.2 69 198-294 55-123 (183)
40 cd04159 Arl10_like Arl10-like 98.9 4.8E-09 1E-13 92.8 10.3 69 198-294 47-115 (159)
41 cd04156 ARLTS1 ARLTS1 subfamil 98.9 5.8E-09 1.3E-13 93.8 10.3 68 198-293 47-114 (160)
42 cd04136 Rap_like Rap-like subf 98.9 2E-08 4.4E-13 90.2 11.5 69 198-294 52-120 (163)
43 cd00878 Arf_Arl Arf (ADP-ribos 98.9 2E-08 4.2E-13 90.3 10.8 69 198-294 46-114 (158)
44 cd04138 H_N_K_Ras_like H-Ras/N 98.8 2.3E-08 5E-13 89.3 10.9 70 198-295 52-121 (162)
45 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 3.3E-08 7.3E-13 93.3 12.5 105 198-330 53-167 (201)
46 cd04120 Rab12 Rab12 subfamily. 98.8 2.8E-08 6.1E-13 94.7 10.9 104 198-330 52-162 (202)
47 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 7.4E-08 1.6E-12 88.9 13.2 105 198-330 53-163 (172)
48 cd04176 Rap2 Rap2 subgroup. T 98.8 3.5E-08 7.5E-13 89.1 10.7 69 198-294 52-120 (163)
49 cd00154 Rab Rab family. Rab G 98.8 2.9E-08 6.3E-13 87.6 10.0 67 198-293 52-118 (159)
50 cd04112 Rab26 Rab26 subfamily. 98.8 9.6E-08 2.1E-12 89.4 13.7 104 198-330 53-162 (191)
51 cd01874 Cdc42 Cdc42 subfamily. 98.8 1.4E-07 3.1E-12 87.3 14.4 69 198-295 52-120 (175)
52 cd04115 Rab33B_Rab33A Rab33B/R 98.8 5.7E-08 1.2E-12 88.9 11.3 70 198-295 54-124 (170)
53 cd04143 Rhes_like Rhes_like su 98.7 1.5E-07 3.2E-12 92.5 13.9 105 198-330 51-170 (247)
54 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.7 1.1E-07 2.3E-12 86.3 11.9 69 198-295 54-122 (166)
55 PLN03071 GTP-binding nuclear p 98.7 2.2E-07 4.8E-12 89.4 14.6 103 198-330 65-171 (219)
56 cd04177 RSR1 RSR1 subgroup. R 98.7 1.4E-07 3E-12 86.1 12.5 71 198-296 52-122 (168)
57 cd01892 Miro2 Miro2 subfamily. 98.7 1.1E-07 2.3E-12 87.5 11.6 67 198-295 57-123 (169)
58 cd01875 RhoG RhoG subfamily. 98.7 8E-08 1.7E-12 90.2 10.6 69 198-295 54-122 (191)
59 cd04110 Rab35 Rab35 subfamily. 98.7 8.1E-08 1.8E-12 90.7 10.7 103 198-330 58-166 (199)
60 cd01865 Rab3 Rab3 subfamily. 98.7 7.6E-08 1.7E-12 87.5 10.0 69 198-295 53-121 (165)
61 cd01861 Rab6 Rab6 subfamily. 98.7 1.1E-07 2.4E-12 85.4 10.6 68 198-294 52-119 (161)
62 cd01860 Rab5_related Rab5-rela 98.7 8.5E-08 1.9E-12 86.3 9.9 68 198-294 53-120 (163)
63 cd04139 RalA_RalB RalA/RalB su 98.7 9.3E-08 2E-12 85.7 10.0 69 198-294 51-119 (164)
64 PTZ00369 Ras-like protein; Pro 98.7 1.2E-07 2.5E-12 88.7 11.0 105 198-330 56-166 (189)
65 cd04117 Rab15 Rab15 subfamily. 98.7 2.9E-07 6.4E-12 83.6 13.3 69 198-295 52-120 (161)
66 cd04122 Rab14 Rab14 subfamily. 98.7 1E-07 2.2E-12 86.6 10.2 69 198-295 54-122 (166)
67 cd04127 Rab27A Rab27a subfamil 98.7 7E-08 1.5E-12 88.7 9.2 70 198-295 66-135 (180)
68 cd04121 Rab40 Rab40 subfamily. 98.7 4.3E-07 9.2E-12 85.7 14.6 103 198-330 58-166 (189)
69 smart00173 RAS Ras subfamily o 98.7 1E-07 2.2E-12 86.0 9.9 69 198-294 51-119 (164)
70 cd01871 Rac1_like Rac1-like su 98.7 1.5E-07 3.2E-12 87.1 11.1 69 198-295 52-120 (174)
71 cd00877 Ran Ran (Ras-related n 98.7 3.9E-07 8.4E-12 83.4 13.3 103 198-330 52-158 (166)
72 cd01863 Rab18 Rab18 subfamily. 98.7 1.7E-07 3.6E-12 84.3 10.8 68 198-293 52-119 (161)
73 cd04101 RabL4 RabL4 (Rab-like4 98.7 2.2E-07 4.9E-12 83.7 11.4 67 198-294 55-121 (164)
74 cd01862 Rab7 Rab7 subfamily. 98.7 1.9E-07 4.1E-12 84.6 10.9 104 198-330 52-166 (172)
75 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 2.1E-07 4.5E-12 90.1 11.3 68 198-294 52-119 (222)
76 cd04123 Rab21 Rab21 subfamily. 98.6 1.4E-07 3E-12 84.3 9.1 68 198-294 52-119 (162)
77 PLN00023 GTP-binding protein; 98.6 5.7E-07 1.2E-11 91.5 14.5 33 198-230 86-118 (334)
78 cd01867 Rab8_Rab10_Rab13_like 98.6 2.2E-07 4.7E-12 84.7 10.4 68 198-294 55-122 (167)
79 cd04145 M_R_Ras_like M-Ras/R-R 98.6 1.5E-07 3.2E-12 84.7 9.1 70 198-295 53-122 (164)
80 cd04105 SR_beta Signal recogni 98.6 1.4E-07 3E-12 89.9 9.2 71 198-295 51-124 (203)
81 cd04137 RheB Rheb (Ras Homolog 98.6 1.2E-07 2.6E-12 87.2 8.6 69 198-294 52-120 (180)
82 cd01864 Rab19 Rab19 subfamily. 98.6 3.6E-07 7.7E-12 82.9 11.2 69 198-295 55-123 (165)
83 cd04147 Ras_dva Ras-dva subfam 98.6 3.2E-07 6.9E-12 86.5 11.0 69 198-294 50-118 (198)
84 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 3E-07 6.5E-12 86.1 10.7 68 198-294 56-123 (182)
85 cd04130 Wrch_1 Wrch-1 subfamil 98.6 4.3E-07 9.3E-12 83.3 11.4 67 198-294 51-118 (173)
86 cd04125 RabA_like RabA-like su 98.6 2.9E-07 6.3E-12 85.7 10.4 69 198-295 52-120 (188)
87 cd04119 RJL RJL (RabJ-Like) su 98.6 2.9E-07 6.3E-12 82.6 10.1 72 198-294 52-124 (168)
88 cd04140 ARHI_like ARHI subfami 98.6 6E-07 1.3E-11 81.6 12.2 71 198-294 52-122 (165)
89 cd04126 Rab20 Rab20 subfamily. 98.6 8.6E-07 1.9E-11 85.8 13.9 69 198-295 47-115 (220)
90 cd04116 Rab9 Rab9 subfamily. 98.6 5.4E-07 1.2E-11 81.9 11.7 72 198-294 57-128 (170)
91 cd04109 Rab28 Rab28 subfamily. 98.6 4.7E-07 1E-11 86.6 11.8 104 198-330 53-165 (215)
92 cd01866 Rab2 Rab2 subfamily. 98.6 3.3E-07 7.1E-12 83.7 10.0 68 198-294 56-123 (168)
93 cd04134 Rho3 Rho3 subfamily. 98.6 4.9E-07 1.1E-11 84.6 11.4 68 198-295 51-119 (189)
94 smart00175 RAB Rab subfamily o 98.6 5.3E-07 1.2E-11 80.9 11.1 68 198-294 52-119 (164)
95 cd04144 Ras2 Ras2 subfamily. 98.6 1.9E-07 4.1E-12 87.4 8.5 107 198-330 50-162 (190)
96 cd04113 Rab4 Rab4 subfamily. 98.5 4.8E-07 1E-11 81.4 10.1 68 198-294 52-119 (161)
97 cd04118 Rab24 Rab24 subfamily. 98.5 2.2E-06 4.8E-11 79.9 14.8 103 198-330 53-165 (193)
98 cd04135 Tc10 TC10 subfamily. 98.5 1.2E-06 2.6E-11 79.9 12.6 69 198-295 51-119 (174)
99 cd00876 Ras Ras family. The R 98.5 8E-07 1.7E-11 79.1 11.2 69 198-294 50-118 (160)
100 COG1100 GTPase SAR1 and relate 98.5 2.8E-07 6E-12 87.5 8.6 72 198-297 57-128 (219)
101 cd04111 Rab39 Rab39 subfamily. 98.5 7.3E-07 1.6E-11 85.3 11.5 105 198-330 55-165 (211)
102 cd04133 Rop_like Rop subfamily 98.5 6.7E-07 1.4E-11 83.4 10.6 69 198-296 52-121 (176)
103 cd04103 Centaurin_gamma Centau 98.5 1.2E-06 2.6E-11 79.8 12.0 63 198-293 50-112 (158)
104 cd04128 Spg1 Spg1p. Spg1p (se 98.5 9E-07 2E-11 82.6 11.2 66 198-293 52-117 (182)
105 cd00157 Rho Rho (Ras homology) 98.5 1.3E-06 2.7E-11 79.1 11.8 70 198-296 51-120 (171)
106 PLN03118 Rab family protein; P 98.5 1.7E-06 3.7E-11 82.3 12.9 105 198-330 65-176 (211)
107 cd04106 Rab23_lke Rab23-like s 98.5 1.6E-06 3.5E-11 77.8 12.0 67 198-294 54-120 (162)
108 cd04102 RabL3 RabL3 (Rab-like3 98.5 1.2E-06 2.6E-11 83.6 11.7 34 198-231 57-90 (202)
109 cd04124 RabL2 RabL2 subfamily. 98.5 9.7E-07 2.1E-11 80.1 10.5 33 198-230 52-84 (161)
110 cd04108 Rab36_Rab34 Rab34/Rab3 98.5 8.8E-07 1.9E-11 81.5 10.3 69 198-294 52-120 (170)
111 cd04132 Rho4_like Rho4-like su 98.5 8.8E-07 1.9E-11 82.0 10.2 69 198-295 52-120 (187)
112 PF08477 Miro: Miro-like prote 98.5 4.4E-07 9.5E-12 77.7 7.5 66 198-291 53-119 (119)
113 cd04131 Rnd Rnd subfamily. Th 98.5 1.2E-06 2.7E-11 81.5 10.8 68 198-294 52-119 (178)
114 cd01868 Rab11_like Rab11-like. 98.5 1.5E-06 3.3E-11 78.5 11.1 68 198-294 55-122 (165)
115 smart00174 RHO Rho (Ras homolo 98.5 3.9E-06 8.5E-11 76.5 13.9 68 198-295 49-117 (174)
116 cd04114 Rab30 Rab30 subfamily. 98.5 1.6E-06 3.5E-11 78.5 11.1 33 198-230 59-91 (169)
117 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 8.8E-07 1.9E-11 86.4 9.9 68 198-294 64-131 (232)
118 cd01870 RhoA_like RhoA-like su 98.4 2.5E-06 5.4E-11 77.8 11.4 68 198-294 52-119 (175)
119 TIGR00231 small_GTP small GTP- 98.4 3.4E-06 7.4E-11 73.6 11.7 71 198-295 53-123 (161)
120 cd00882 Ras_like_GTPase Ras-li 98.4 1E-06 2.2E-11 75.8 8.1 70 198-295 48-117 (157)
121 cd04146 RERG_RasL11_like RERG/ 98.4 1.8E-06 3.9E-11 78.2 9.7 69 198-294 50-120 (165)
122 cd04148 RGK RGK subfamily. Th 98.4 3.6E-06 7.9E-11 81.1 11.9 101 198-330 53-162 (221)
123 PTZ00132 GTP-binding nuclear p 98.4 4.1E-06 8.9E-11 79.9 12.1 67 198-294 61-127 (215)
124 PF00071 Ras: Ras family; Int 98.4 3.6E-06 7.8E-11 75.7 10.9 68 198-294 51-118 (162)
125 PLN03108 Rab family protein; P 98.3 3.3E-06 7.2E-11 80.6 10.7 69 198-295 58-126 (210)
126 PRK04213 GTP-binding protein; 98.3 3.6E-06 7.9E-11 79.0 9.9 110 198-330 55-191 (201)
127 cd04129 Rho2 Rho2 subfamily. 98.3 1.3E-05 2.9E-10 74.6 13.4 104 198-330 52-172 (187)
128 PLN03110 Rab GTPase; Provision 98.3 8.4E-06 1.8E-10 78.2 12.1 104 198-330 64-173 (216)
129 cd01893 Miro1 Miro1 subfamily. 98.3 7.5E-06 1.6E-10 74.5 10.7 70 198-296 50-119 (166)
130 cd04142 RRP22 RRP22 subfamily. 98.2 1.1E-05 2.5E-10 76.4 11.5 70 198-295 52-131 (198)
131 cd01890 LepA LepA subfamily. 98.2 1.5E-05 3.4E-10 72.8 11.5 33 198-230 70-102 (179)
132 PTZ00099 rab6; Provisional 98.2 1.4E-05 3E-10 74.5 10.8 104 198-330 32-141 (176)
133 cd01873 RhoBTB RhoBTB subfamil 98.1 2E-05 4.4E-10 74.6 11.0 66 198-294 69-134 (195)
134 PF04670 Gtr1_RagA: Gtr1/RagA 98.1 1E-05 2.2E-10 78.9 9.0 69 198-295 51-126 (232)
135 cd00881 GTP_translation_factor 98.0 2.2E-05 4.9E-10 71.9 9.0 64 198-294 65-128 (189)
136 PRK09518 bifunctional cytidyla 98.0 0.00034 7.3E-09 78.9 20.1 101 197-330 325-435 (712)
137 cd04168 TetM_like Tet(M)-like 98.0 8.4E-05 1.8E-09 72.7 12.6 64 198-294 67-130 (237)
138 smart00176 RAN Ran (Ras-relate 97.9 7E-05 1.5E-09 71.3 9.4 102 198-330 47-153 (200)
139 cd01894 EngA1 EngA1 subfamily. 97.8 0.00011 2.3E-09 65.1 9.3 33 198-230 48-88 (157)
140 cd01878 HflX HflX subfamily. 97.8 0.00024 5.1E-09 66.9 11.5 23 11-33 39-61 (204)
141 cd04169 RF3 RF3 subfamily. Pe 97.8 9.6E-05 2.1E-09 73.6 9.1 52 157-230 55-106 (267)
142 cd04164 trmE TrmE (MnmE, ThdF, 97.8 0.00039 8.5E-09 61.3 11.9 20 14-33 2-21 (157)
143 PF00009 GTP_EFTU: Elongation 97.7 0.00016 3.5E-09 67.5 9.7 68 198-298 73-140 (188)
144 TIGR02729 Obg_CgtA Obg family 97.7 0.00024 5.1E-09 72.9 10.1 73 198-295 208-288 (329)
145 cd01888 eIF2_gamma eIF2-gamma 97.6 0.00019 4.2E-09 68.1 8.5 33 198-230 86-118 (203)
146 COG2229 Predicted GTPase [Gene 97.6 0.00021 4.6E-09 66.6 8.4 66 198-295 71-136 (187)
147 cd04170 EF-G_bact Elongation f 97.6 0.00032 6.9E-09 69.5 10.1 64 198-294 67-130 (268)
148 PRK15494 era GTPase Era; Provi 97.6 0.00051 1.1E-08 70.7 11.8 99 198-330 103-215 (339)
149 cd01886 EF-G Elongation factor 97.6 0.00023 5E-09 71.0 8.3 83 157-294 48-130 (270)
150 PRK12317 elongation factor 1-a 97.5 0.00093 2E-08 70.7 12.7 52 157-230 68-119 (425)
151 cd04166 CysN_ATPS CysN_ATPS su 97.5 0.00099 2.1E-08 63.5 11.7 33 198-230 80-112 (208)
152 TIGR00450 mnmE_trmE_thdF tRNA 97.5 0.0006 1.3E-08 72.7 11.1 23 11-33 201-223 (442)
153 cd01889 SelB_euk SelB subfamil 97.5 0.00053 1.1E-08 64.1 8.8 33 198-230 71-103 (192)
154 TIGR00503 prfC peptide chain r 97.5 0.00054 1.2E-08 74.6 10.0 63 198-293 83-145 (527)
155 cd01895 EngA2 EngA2 subfamily. 97.5 0.0014 2.9E-08 58.7 11.0 21 13-33 2-22 (174)
156 cd00880 Era_like Era (E. coli 97.4 0.00037 8E-09 60.6 7.1 35 198-232 48-89 (163)
157 PRK00093 GTP-binding protein D 97.4 0.00089 1.9E-08 70.8 10.8 100 198-330 52-161 (435)
158 TIGR00483 EF-1_alpha translati 97.4 0.0014 3E-08 69.5 11.8 34 198-231 88-121 (426)
159 PRK00741 prfC peptide chain re 97.3 0.00085 1.9E-08 73.0 9.6 83 157-294 63-145 (526)
160 TIGR03594 GTPase_EngA ribosome 97.3 0.0018 4E-08 68.2 11.9 63 198-293 223-296 (429)
161 KOG0084|consensus 97.3 0.00083 1.8E-08 63.4 8.1 71 198-297 61-131 (205)
162 TIGR01393 lepA GTP-binding pro 97.3 0.0022 4.8E-08 70.8 12.9 100 198-330 73-179 (595)
163 PRK13351 elongation factor G; 97.2 0.0015 3.3E-08 73.3 10.5 86 155-295 55-140 (687)
164 PRK05291 trmE tRNA modificatio 97.2 0.0022 4.8E-08 68.5 11.0 95 198-330 266-369 (449)
165 cd04167 Snu114p Snu114p subfam 97.2 0.002 4.4E-08 61.4 9.6 34 198-231 74-107 (213)
166 PRK10218 GTP-binding protein; 97.2 0.0023 5E-08 70.8 11.2 64 198-294 71-134 (607)
167 PRK00089 era GTPase Era; Revie 97.1 0.0036 7.8E-08 62.6 11.2 100 198-330 56-170 (292)
168 KOG0090|consensus 97.1 0.0011 2.5E-08 63.3 6.7 72 198-296 85-161 (238)
169 TIGR00475 selB selenocysteine- 97.1 0.0025 5.4E-08 70.3 10.4 33 198-230 53-85 (581)
170 CHL00189 infB translation init 97.1 0.0018 4E-08 72.9 9.4 64 198-294 298-361 (742)
171 TIGR00487 IF-2 translation ini 97.1 0.004 8.6E-08 68.7 11.8 63 198-293 138-200 (587)
172 PF09439 SRPRB: Signal recogni 97.1 0.00035 7.6E-09 65.7 3.1 71 198-295 52-127 (181)
173 PRK05433 GTP-binding protein L 97.0 0.0026 5.7E-08 70.4 9.6 100 198-330 77-183 (600)
174 cd04171 SelB SelB subfamily. 97.0 0.0015 3.2E-08 58.3 6.2 33 198-230 54-86 (164)
175 PRK09518 bifunctional cytidyla 97.0 0.0054 1.2E-07 69.3 11.8 22 12-33 449-470 (712)
176 PRK05306 infB translation init 97.0 0.005 1.1E-07 70.0 11.4 64 198-294 340-403 (787)
177 PRK03003 GTP-binding protein D 96.9 0.011 2.4E-07 63.6 13.2 23 11-33 209-231 (472)
178 PRK00093 GTP-binding protein D 96.9 0.0066 1.4E-07 64.2 11.2 23 11-33 171-193 (435)
179 TIGR03680 eif2g_arch translati 96.9 0.0023 5E-08 67.4 7.1 33 198-230 83-115 (406)
180 PF03029 ATP_bind_1: Conserved 96.8 0.0019 4.1E-08 63.3 5.9 71 198-296 94-172 (238)
181 TIGR03594 GTPase_EngA ribosome 96.8 0.012 2.6E-07 62.1 12.1 100 198-330 50-159 (429)
182 cd01887 IF2_eIF5B IF2/eIF5B (i 96.8 0.0025 5.5E-08 57.2 5.9 34 198-231 53-86 (168)
183 KOG0094|consensus 96.8 0.0062 1.3E-07 57.6 8.4 70 198-295 74-143 (221)
184 cd01884 EF_Tu EF-Tu subfamily. 96.7 0.01 2.3E-07 56.2 10.0 33 198-230 68-100 (195)
185 cd01883 EF1_alpha Eukaryotic e 96.7 0.0013 2.7E-08 63.3 3.5 52 157-230 61-112 (219)
186 cd01897 NOG NOG1 is a nucleola 96.7 0.01 2.2E-07 53.5 9.0 19 15-33 2-20 (168)
187 cd01850 CDC_Septin CDC/Septin. 96.6 0.024 5.2E-07 56.8 12.2 22 12-33 3-24 (276)
188 TIGR00484 EF-G translation elo 96.6 0.015 3.3E-07 65.4 11.9 64 198-294 78-141 (689)
189 PRK05124 cysN sulfate adenylyl 96.5 0.031 6.8E-07 60.2 12.9 30 9-40 23-52 (474)
190 cd01891 TypA_BipA TypA (tyrosi 96.5 0.0051 1.1E-07 57.5 6.1 64 198-294 68-131 (194)
191 cd01881 Obg_like The Obg-like 96.3 0.0088 1.9E-07 54.0 6.4 76 198-295 47-135 (176)
192 PRK12299 obgE GTPase CgtA; Rev 96.3 0.0087 1.9E-07 61.6 6.9 69 198-294 209-285 (335)
193 COG5256 TEF1 Translation elong 96.3 0.0088 1.9E-07 62.4 6.5 54 155-230 67-120 (428)
194 KOG0092|consensus 96.2 0.027 6E-07 53.1 8.9 69 198-295 57-125 (200)
195 cd01879 FeoB Ferrous iron tran 96.2 0.017 3.6E-07 51.1 7.3 62 198-294 46-115 (158)
196 PRK09866 hypothetical protein; 96.2 0.01 2.3E-07 65.4 6.7 23 11-33 67-89 (741)
197 KOG0395|consensus 96.2 0.017 3.7E-07 54.9 7.6 70 198-295 54-123 (196)
198 PRK08118 topology modulation p 96.1 0.0041 9E-08 57.5 2.9 24 15-38 3-26 (167)
199 PRK04000 translation initiatio 96.0 0.015 3.2E-07 61.6 7.0 25 9-33 5-29 (411)
200 PTZ00141 elongation factor 1- 96.0 0.039 8.4E-07 59.1 10.1 33 198-230 88-120 (446)
201 TIGR02034 CysN sulfate adenyly 96.0 0.037 8.1E-07 58.4 9.7 25 14-40 1-25 (406)
202 KOG0086|consensus 96.0 0.026 5.7E-07 51.4 7.2 33 198-230 61-93 (214)
203 cd01898 Obg Obg subfamily. Th 95.9 0.017 3.7E-07 52.0 6.2 71 198-294 51-128 (170)
204 COG0563 Adk Adenylate kinase a 95.9 0.0052 1.1E-07 57.6 2.9 22 15-36 2-23 (178)
205 CHL00071 tufA elongation facto 95.9 0.032 7E-07 58.9 9.2 33 198-230 78-110 (409)
206 cd04165 GTPBP1_like GTPBP1-lik 95.9 0.026 5.6E-07 54.8 7.7 20 15-34 1-20 (224)
207 PRK07261 topology modulation p 95.9 0.0057 1.2E-07 56.7 2.9 22 15-36 2-23 (171)
208 COG4639 Predicted kinase [Gene 95.9 0.0084 1.8E-07 54.9 3.9 17 16-32 5-21 (168)
209 PRK12739 elongation factor G; 95.9 0.052 1.1E-06 61.2 11.1 65 198-295 76-140 (691)
210 PF13207 AAA_17: AAA domain; P 95.9 0.0064 1.4E-07 52.1 3.0 22 15-36 1-22 (121)
211 PF06858 NOG1: Nucleolar GTP-b 95.9 0.014 3E-07 44.6 4.3 44 220-291 15-58 (58)
212 PRK03003 GTP-binding protein D 95.8 0.017 3.7E-07 62.1 6.7 100 198-330 89-198 (472)
213 KOG0078|consensus 95.8 0.024 5.1E-07 54.2 6.7 69 198-295 64-132 (207)
214 PRK09554 feoB ferrous iron tra 95.8 0.049 1.1E-06 62.1 10.2 21 13-33 3-23 (772)
215 PRK05506 bifunctional sulfate 95.7 0.092 2E-06 58.6 12.1 29 10-40 21-49 (632)
216 PRK12296 obgE GTPase CgtA; Rev 95.7 0.02 4.3E-07 61.9 6.3 112 198-330 209-339 (500)
217 PRK12297 obgE GTPase CgtA; Rev 95.6 0.048 1E-06 57.9 8.8 108 198-330 209-326 (424)
218 COG4619 ABC-type uncharacteriz 95.6 0.012 2.6E-07 54.8 3.6 25 14-38 30-54 (223)
219 KOG3883|consensus 95.5 0.11 2.4E-06 47.5 9.3 69 198-294 63-132 (198)
220 PF13671 AAA_33: AAA domain; P 95.3 0.012 2.6E-07 51.8 2.7 19 16-34 2-20 (143)
221 PLN00043 elongation factor 1-a 95.3 0.11 2.3E-06 55.7 10.3 33 198-230 88-120 (447)
222 PF13555 AAA_29: P-loop contai 95.3 0.019 4.1E-07 44.6 3.3 23 15-37 25-47 (62)
223 PRK12735 elongation factor Tu; 95.2 0.14 2.9E-06 54.0 10.6 25 10-34 9-33 (396)
224 KOG1673|consensus 95.2 0.068 1.5E-06 49.0 7.1 64 145-230 39-104 (205)
225 PLN03127 Elongation factor Tu; 95.1 0.19 4.2E-06 53.8 11.6 26 8-33 56-81 (447)
226 PRK06217 hypothetical protein; 95.0 0.021 4.6E-07 53.2 3.5 24 14-37 2-25 (183)
227 TIGR00490 aEF-2 translation el 95.0 0.064 1.4E-06 60.8 7.8 64 198-294 89-152 (720)
228 KOG0394|consensus 94.8 0.41 8.8E-06 45.2 11.3 32 198-229 61-92 (210)
229 PLN03126 Elongation factor Tu; 94.8 0.13 2.9E-06 55.5 9.3 24 10-33 78-101 (478)
230 PF01926 MMR_HSR1: 50S ribosom 94.8 0.022 4.9E-07 48.5 2.8 20 15-34 1-20 (116)
231 COG1126 GlnQ ABC-type polar am 94.6 0.026 5.6E-07 54.5 3.0 28 9-37 25-52 (240)
232 PRK00007 elongation factor G; 94.4 0.29 6.2E-06 55.3 11.2 23 11-33 8-30 (693)
233 PF13238 AAA_18: AAA domain; P 94.3 0.034 7.3E-07 47.6 2.8 19 16-34 1-19 (129)
234 TIGR01394 TypA_BipA GTP-bindin 94.3 0.079 1.7E-06 58.7 6.3 83 157-294 48-130 (594)
235 PRK03839 putative kinase; Prov 94.3 0.034 7.3E-07 51.5 2.9 22 15-36 2-23 (180)
236 TIGR03598 GTPase_YsxC ribosome 94.3 0.038 8.3E-07 50.9 3.2 24 11-34 16-39 (179)
237 TIGR02322 phosphon_PhnN phosph 94.2 0.034 7.4E-07 51.2 2.9 22 15-36 3-24 (179)
238 PRK10078 ribose 1,5-bisphospho 94.2 0.035 7.5E-07 51.9 2.9 20 15-34 4-23 (186)
239 PRK14532 adenylate kinase; Pro 94.1 0.039 8.5E-07 51.3 2.9 20 15-34 2-21 (188)
240 smart00382 AAA ATPases associa 94.0 0.046 1E-06 46.2 3.0 23 15-37 4-26 (148)
241 PRK08233 hypothetical protein; 94.0 0.041 9E-07 50.4 2.8 21 14-34 4-24 (182)
242 KOG0093|consensus 93.9 0.17 3.8E-06 46.0 6.6 73 198-299 73-145 (193)
243 PF02421 FeoB_N: Ferrous iron 93.9 0.23 4.9E-06 45.7 7.6 65 198-297 50-122 (156)
244 TIGR03156 GTP_HflX GTP-binding 93.9 0.18 3.9E-06 52.3 7.7 67 198-294 240-315 (351)
245 KOG0079|consensus 93.9 0.17 3.6E-06 46.1 6.4 44 176-229 48-91 (198)
246 PF00005 ABC_tran: ABC transpo 93.9 0.044 9.6E-07 47.9 2.8 20 15-34 13-32 (137)
247 TIGR01351 adk adenylate kinase 93.9 0.042 9.2E-07 52.3 2.8 23 15-37 1-23 (210)
248 PF13521 AAA_28: AAA domain; P 93.9 0.039 8.4E-07 50.2 2.4 22 15-36 1-22 (163)
249 cd02021 GntK Gluconate kinase 93.8 0.046 9.9E-07 48.8 2.8 20 16-35 2-21 (150)
250 PRK13949 shikimate kinase; Pro 93.8 0.047 1E-06 50.5 3.0 23 15-37 3-25 (169)
251 TIGR01360 aden_kin_iso1 adenyl 93.8 0.045 9.8E-07 50.4 2.8 20 15-34 5-24 (188)
252 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.057 1.2E-06 49.8 3.4 22 16-37 2-23 (183)
253 cd02019 NK Nucleoside/nucleoti 93.8 0.06 1.3E-06 42.2 3.0 21 16-36 2-22 (69)
254 TIGR01313 therm_gnt_kin carboh 93.7 0.045 9.8E-07 49.6 2.6 22 16-37 1-22 (163)
255 PRK14530 adenylate kinase; Pro 93.7 0.06 1.3E-06 51.5 3.5 24 15-38 5-28 (215)
256 PTZ00088 adenylate kinase 1; P 93.6 0.063 1.4E-06 52.3 3.6 26 13-38 6-31 (229)
257 PF00004 AAA: ATPase family as 93.6 0.058 1.3E-06 46.3 3.0 19 16-34 1-19 (132)
258 cd01428 ADK Adenylate kinase ( 93.6 0.063 1.4E-06 49.8 3.4 23 15-37 1-23 (194)
259 cd04163 Era Era subfamily. Er 93.6 0.061 1.3E-06 47.2 3.1 21 13-33 3-23 (168)
260 TIGR03263 guanyl_kin guanylate 93.5 0.055 1.2E-06 49.8 2.9 21 15-35 3-23 (180)
261 cd03283 ABC_MutS-like MutS-lik 93.5 0.056 1.2E-06 51.4 2.8 20 15-34 27-46 (199)
262 cd01876 YihA_EngB The YihA (En 93.4 0.056 1.2E-06 47.7 2.7 20 15-34 1-20 (170)
263 cd00071 GMPK Guanosine monopho 93.4 0.073 1.6E-06 47.5 3.4 22 16-37 2-23 (137)
264 KOG0057|consensus 93.4 0.065 1.4E-06 57.9 3.5 28 10-38 376-403 (591)
265 cd00820 PEPCK_HprK Phosphoenol 93.4 0.061 1.3E-06 46.4 2.7 20 14-33 16-35 (107)
266 PRK02496 adk adenylate kinase; 93.4 0.076 1.7E-06 49.3 3.6 24 14-37 2-25 (184)
267 PF00025 Arf: ADP-ribosylation 93.4 0.13 2.8E-06 47.5 5.1 35 405-439 94-128 (175)
268 PTZ00416 elongation factor 2; 93.3 0.31 6.7E-06 56.3 9.1 63 198-293 95-157 (836)
269 TIGR00235 udk uridine kinase. 93.3 0.077 1.7E-06 50.4 3.5 24 13-36 6-29 (207)
270 PRK12298 obgE GTPase CgtA; Rev 93.3 0.18 4E-06 53.0 6.6 73 197-294 209-289 (390)
271 cd01885 EF2 EF2 (for archaea a 93.2 0.17 3.7E-06 49.1 5.9 64 198-294 76-139 (222)
272 PRK14531 adenylate kinase; Pro 93.2 0.081 1.8E-06 49.3 3.5 23 15-37 4-26 (183)
273 PRK00300 gmk guanylate kinase; 93.2 0.066 1.4E-06 50.4 2.8 23 14-36 6-28 (205)
274 TIGR02528 EutP ethanolamine ut 93.1 0.076 1.6E-06 46.5 2.9 19 15-33 2-20 (142)
275 PRK05480 uridine/cytidine kina 93.1 0.084 1.8E-06 50.1 3.4 26 11-36 4-29 (209)
276 cd02023 UMPK Uridine monophosp 93.1 0.092 2E-06 49.3 3.7 22 16-37 2-23 (198)
277 cd00227 CPT Chloramphenicol (C 93.0 0.079 1.7E-06 48.9 3.0 21 16-36 5-25 (175)
278 PF05729 NACHT: NACHT domain 93.0 0.075 1.6E-06 47.3 2.8 18 16-33 3-20 (166)
279 COG1122 CbiO ABC-type cobalt t 92.9 0.074 1.6E-06 52.1 2.8 24 14-37 31-54 (235)
280 cd03243 ABC_MutS_homologs The 92.9 0.075 1.6E-06 50.3 2.8 20 15-34 31-50 (202)
281 COG3839 MalK ABC-type sugar tr 92.9 0.072 1.6E-06 54.9 2.8 48 15-62 31-101 (338)
282 KOG0098|consensus 92.8 0.25 5.4E-06 46.7 6.0 70 198-296 58-127 (216)
283 PF13173 AAA_14: AAA domain 92.8 0.085 1.9E-06 46.1 2.8 20 15-34 4-23 (128)
284 COG4161 ArtP ABC-type arginine 92.8 0.11 2.5E-06 48.1 3.7 30 8-38 24-53 (242)
285 cd03274 ABC_SMC4_euk Eukaryoti 92.8 0.096 2.1E-06 50.3 3.3 23 16-38 28-50 (212)
286 PRK14738 gmk guanylate kinase; 92.7 0.11 2.4E-06 49.5 3.8 26 9-34 9-34 (206)
287 PRK00279 adk adenylate kinase; 92.7 0.11 2.3E-06 49.8 3.5 23 15-37 2-24 (215)
288 cd03238 ABC_UvrA The excision 92.7 0.092 2E-06 49.1 3.0 19 15-33 23-41 (176)
289 COG1125 OpuBA ABC-type proline 92.7 0.083 1.8E-06 52.4 2.7 22 16-37 30-51 (309)
290 COG4598 HisP ABC-type histidin 92.6 0.11 2.3E-06 49.2 3.2 24 16-39 35-58 (256)
291 PRK12740 elongation factor G; 92.6 0.2 4.3E-06 56.2 6.1 84 156-294 43-126 (668)
292 PF10662 PduV-EutP: Ethanolami 92.6 0.092 2E-06 47.6 2.8 20 15-34 3-22 (143)
293 COG3842 PotA ABC-type spermidi 92.6 0.085 1.8E-06 54.6 2.8 18 16-33 34-51 (352)
294 PLN00116 translation elongatio 92.6 0.38 8.1E-06 55.6 8.3 63 198-293 101-163 (843)
295 COG1120 FepC ABC-type cobalami 92.5 0.089 1.9E-06 52.2 2.8 26 10-36 26-51 (258)
296 PRK13695 putative NTPase; Prov 92.4 0.1 2.2E-06 48.1 3.0 20 14-33 1-20 (174)
297 PRK06762 hypothetical protein; 92.4 0.13 2.7E-06 46.8 3.5 24 15-38 4-27 (166)
298 cd03219 ABC_Mj1267_LivG_branch 92.4 0.098 2.1E-06 50.4 3.0 20 15-34 28-47 (236)
299 TIGR00491 aIF-2 translation in 92.4 0.18 3.9E-06 55.9 5.3 33 198-230 72-104 (590)
300 cd00009 AAA The AAA+ (ATPases 92.4 0.1 2.3E-06 44.5 2.8 23 14-36 20-42 (151)
301 cd03292 ABC_FtsE_transporter F 92.4 0.1 2.2E-06 49.5 3.0 20 15-34 29-48 (214)
302 PRK14527 adenylate kinase; Pro 92.4 0.098 2.1E-06 49.0 2.8 24 14-37 7-30 (191)
303 PRK00454 engB GTP-binding prot 92.4 0.11 2.4E-06 48.0 3.2 24 11-34 22-45 (196)
304 TIGR00437 feoB ferrous iron tr 92.4 0.3 6.6E-06 54.1 7.1 97 198-329 44-153 (591)
305 cd04104 p47_IIGP_like p47 (47- 92.4 0.11 2.3E-06 49.0 3.1 22 13-34 1-22 (197)
306 PRK14528 adenylate kinase; Pro 92.4 0.13 2.7E-06 48.3 3.5 23 15-37 3-25 (186)
307 PRK06547 hypothetical protein; 92.4 0.08 1.7E-06 49.3 2.1 29 6-34 8-36 (172)
308 TIGR01526 nadR_NMN_Atrans nico 92.4 0.11 2.4E-06 53.3 3.4 29 14-42 163-191 (325)
309 cd03226 ABC_cobalt_CbiO_domain 92.4 0.1 2.3E-06 49.2 3.0 20 15-34 28-47 (205)
310 cd02025 PanK Pantothenate kina 92.3 0.1 2.2E-06 50.5 2.9 22 16-37 2-23 (220)
311 COG4778 PhnL ABC-type phosphon 92.3 0.11 2.3E-06 48.8 2.8 25 8-33 33-57 (235)
312 COG2274 SunT ABC-type bacterio 92.3 0.083 1.8E-06 59.6 2.6 28 11-39 498-525 (709)
313 cd03280 ABC_MutS2 MutS2 homolo 92.3 0.11 2.3E-06 49.2 2.9 20 15-34 30-49 (200)
314 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.3 0.11 2.3E-06 49.5 3.0 23 11-34 29-51 (218)
315 PRK11058 GTPase HflX; Provisio 92.2 0.33 7.2E-06 51.7 6.8 105 197-330 247-361 (426)
316 TIGR00436 era GTP-binding prot 92.2 0.66 1.4E-05 46.0 8.6 99 198-330 51-163 (270)
317 COG1136 SalX ABC-type antimicr 92.2 0.11 2.3E-06 50.7 2.9 25 11-36 30-54 (226)
318 cd03264 ABC_drug_resistance_li 92.2 0.11 2.4E-06 49.3 2.9 20 15-34 27-46 (211)
319 TIGR00960 3a0501s02 Type II (G 92.2 0.11 2.5E-06 49.3 3.0 20 15-34 31-50 (216)
320 cd03247 ABCC_cytochrome_bd The 92.1 0.12 2.6E-06 47.8 3.0 20 15-34 30-49 (178)
321 TIGR01166 cbiO cobalt transpor 92.1 0.12 2.5E-06 48.3 2.9 20 15-34 20-39 (190)
322 PF04665 Pox_A32: Poxvirus A32 92.1 0.095 2.1E-06 51.5 2.3 28 6-33 6-33 (241)
323 PRK14526 adenylate kinase; Pro 92.1 0.12 2.6E-06 49.8 3.0 20 15-34 2-21 (211)
324 cd03269 ABC_putative_ATPase Th 92.0 0.11 2.5E-06 49.1 2.9 20 15-34 28-47 (210)
325 PRK00625 shikimate kinase; Pro 92.0 0.12 2.6E-06 48.1 3.0 20 15-34 2-21 (173)
326 COG1116 TauB ABC-type nitrate/ 92.0 0.11 2.5E-06 51.0 2.8 22 11-33 28-49 (248)
327 cd00464 SK Shikimate kinase (S 92.0 0.13 2.8E-06 45.8 3.0 23 15-37 1-23 (154)
328 TIGR02673 FtsE cell division A 92.0 0.12 2.5E-06 49.1 2.9 20 15-34 30-49 (214)
329 PRK15177 Vi polysaccharide exp 92.0 0.11 2.5E-06 49.6 2.8 20 15-34 15-34 (213)
330 cd03272 ABC_SMC3_euk Eukaryoti 92.0 0.11 2.4E-06 50.2 2.8 24 15-38 25-48 (243)
331 cd03301 ABC_MalK_N The N-termi 92.0 0.12 2.6E-06 49.0 2.9 23 11-34 25-47 (213)
332 PHA02530 pseT polynucleotide k 92.0 0.11 2.4E-06 51.9 2.8 22 16-37 5-26 (300)
333 cd03265 ABC_DrrA DrrA is the A 92.0 0.12 2.6E-06 49.4 2.9 20 15-34 28-47 (220)
334 cd03262 ABC_HisP_GlnQ_permease 92.0 0.12 2.7E-06 48.8 3.0 20 15-34 28-47 (213)
335 cd03259 ABC_Carb_Solutes_like 91.9 0.12 2.6E-06 49.1 2.9 23 11-34 25-47 (213)
336 PLN02200 adenylate kinase fami 91.9 0.17 3.8E-06 49.4 4.0 26 12-37 42-67 (234)
337 cd01120 RecA-like_NTPases RecA 91.9 0.12 2.6E-06 45.6 2.7 18 16-33 2-19 (165)
338 cd03222 ABC_RNaseL_inhibitor T 91.9 0.12 2.6E-06 48.4 2.7 24 10-34 23-46 (177)
339 PRK14529 adenylate kinase; Pro 91.9 0.15 3.2E-06 49.6 3.5 25 14-38 1-25 (223)
340 PF09439 SRPRB: Signal recogni 91.9 0.13 2.9E-06 48.4 3.0 20 15-34 5-24 (181)
341 cd03234 ABCG_White The White s 91.9 0.13 2.7E-06 49.5 2.9 21 15-35 35-55 (226)
342 TIGR03574 selen_PSTK L-seryl-t 91.8 0.13 2.7E-06 50.4 2.9 20 16-35 2-21 (249)
343 cd03266 ABC_NatA_sodium_export 91.8 0.13 2.8E-06 48.9 3.0 20 15-34 33-52 (218)
344 TIGR02211 LolD_lipo_ex lipopro 91.8 0.12 2.7E-06 49.2 2.8 20 15-34 33-52 (221)
345 PRK05057 aroK shikimate kinase 91.8 0.13 2.9E-06 47.6 2.9 22 14-35 5-26 (172)
346 TIGR02315 ABC_phnC phosphonate 91.8 0.12 2.7E-06 49.9 2.8 20 15-34 30-49 (243)
347 cd03258 ABC_MetN_methionine_tr 91.8 0.13 2.7E-06 49.6 2.9 22 15-36 33-54 (233)
348 cd01898 Obg Obg subfamily. Th 91.8 0.13 2.9E-06 46.1 2.9 20 15-34 2-21 (170)
349 TIGR03608 L_ocin_972_ABC putat 91.8 0.13 2.9E-06 48.3 3.0 23 11-34 23-45 (206)
350 cd03214 ABC_Iron-Siderophores_ 91.8 0.14 3E-06 47.5 3.0 20 15-34 27-46 (180)
351 cd03218 ABC_YhbG The ABC trans 91.8 0.13 2.9E-06 49.4 3.0 20 15-34 28-47 (232)
352 TIGR03410 urea_trans_UrtE urea 91.8 0.13 2.9E-06 49.4 3.0 20 15-34 28-47 (230)
353 cd03263 ABC_subfamily_A The AB 91.7 0.13 2.8E-06 49.0 2.9 20 15-34 30-49 (220)
354 cd03261 ABC_Org_Solvent_Resist 91.7 0.13 2.8E-06 49.6 2.9 20 15-34 28-47 (235)
355 PRK08356 hypothetical protein; 91.7 0.17 3.7E-06 47.6 3.6 21 14-34 6-26 (195)
356 PRK07560 elongation factor EF- 91.7 0.43 9.4E-06 54.3 7.4 64 198-294 90-153 (731)
357 cd03224 ABC_TM1139_LivF_branch 91.7 0.13 2.8E-06 49.0 2.8 20 15-34 28-47 (222)
358 cd03225 ABC_cobalt_CbiO_domain 91.7 0.13 2.9E-06 48.6 2.9 20 15-34 29-48 (211)
359 cd03232 ABC_PDR_domain2 The pl 91.7 0.13 2.9E-06 48.2 2.8 20 15-34 35-54 (192)
360 PRK13540 cytochrome c biogenes 91.7 0.14 3.1E-06 48.2 3.0 20 15-34 29-48 (200)
361 smart00534 MUTSac ATPase domai 91.6 0.16 3.4E-06 47.6 3.2 21 16-36 2-22 (185)
362 cd03281 ABC_MSH5_euk MutS5 hom 91.6 0.16 3.5E-06 48.8 3.4 23 14-36 30-52 (213)
363 cd03229 ABC_Class3 This class 91.6 0.14 3E-06 47.4 2.9 20 15-34 28-47 (178)
364 PRK00131 aroK shikimate kinase 91.6 0.15 3.2E-06 46.1 3.0 23 14-36 5-27 (175)
365 COG4615 PvdE ABC-type sideroph 91.6 0.16 3.5E-06 53.2 3.5 42 11-53 348-399 (546)
366 COG4559 ABC-type hemin transpo 91.6 0.13 2.8E-06 49.7 2.7 46 16-61 30-88 (259)
367 PRK13543 cytochrome c biogenes 91.6 0.14 3E-06 48.9 2.9 22 15-36 39-60 (214)
368 TIGR01978 sufC FeS assembly AT 91.6 0.14 3E-06 49.5 3.0 20 15-34 28-47 (243)
369 cd03235 ABC_Metallic_Cations A 91.6 0.14 3.1E-06 48.6 2.9 20 15-34 27-46 (213)
370 cd03216 ABC_Carb_Monos_I This 91.6 0.14 3.1E-06 46.8 2.9 20 15-34 28-47 (163)
371 TIGR02770 nickel_nikD nickel i 91.6 0.14 2.9E-06 49.5 2.8 20 15-34 14-33 (230)
372 cd03256 ABC_PhnC_transporter A 91.6 0.14 2.9E-06 49.5 2.8 20 15-34 29-48 (241)
373 cd03223 ABCD_peroxisomal_ALDP 91.6 0.15 3.2E-06 46.8 3.0 20 15-34 29-48 (166)
374 TIGR00101 ureG urease accessor 91.6 0.15 3.3E-06 48.5 3.1 22 13-34 1-22 (199)
375 PRK11629 lolD lipoprotein tran 91.6 0.14 3E-06 49.5 2.8 20 15-34 37-56 (233)
376 COG1121 ZnuC ABC-type Mn/Zn tr 91.5 0.14 3E-06 50.8 2.8 20 15-34 32-51 (254)
377 PRK11701 phnK phosphonate C-P 91.5 0.14 3.1E-06 50.2 3.0 22 15-36 34-55 (258)
378 cd03293 ABC_NrtD_SsuB_transpor 91.5 0.14 3E-06 48.9 2.9 23 11-34 29-51 (220)
379 cd03257 ABC_NikE_OppD_transpor 91.5 0.14 3E-06 48.9 2.8 20 15-34 33-52 (228)
380 KOG3886|consensus 91.5 0.19 4.2E-06 49.0 3.7 67 198-295 56-131 (295)
381 PRK09825 idnK D-gluconate kina 91.5 0.15 3.2E-06 47.6 2.8 23 15-37 5-27 (176)
382 cd02027 APSK Adenosine 5'-phos 91.5 0.15 3.3E-06 46.0 2.8 21 16-36 2-22 (149)
383 COG1117 PstB ABC-type phosphat 91.4 0.14 3E-06 49.6 2.6 22 17-38 37-58 (253)
384 PF07728 AAA_5: AAA domain (dy 91.4 0.14 3.1E-06 45.0 2.6 21 16-36 2-22 (139)
385 cd03230 ABC_DR_subfamily_A Thi 91.4 0.15 3.3E-06 46.9 2.9 20 15-34 28-47 (173)
386 cd03297 ABC_ModC_molybdenum_tr 91.4 0.15 3.2E-06 48.5 2.9 21 14-34 24-44 (214)
387 COG1084 Predicted GTPase [Gene 91.4 0.38 8.1E-06 49.2 5.8 95 164-299 196-300 (346)
388 PRK14242 phosphate transporter 91.4 0.15 3.2E-06 49.9 2.9 20 15-34 34-53 (253)
389 cd02028 UMPK_like Uridine mono 91.4 0.16 3.5E-06 47.4 3.0 21 16-36 2-22 (179)
390 cd03254 ABCC_Glucan_exporter_l 91.4 0.15 3.2E-06 48.9 2.9 23 11-34 28-50 (229)
391 cd03215 ABC_Carb_Monos_II This 91.3 0.16 3.5E-06 47.2 3.0 20 15-34 28-47 (182)
392 PRK10584 putative ABC transpor 91.2 0.16 3.4E-06 48.8 2.9 22 15-36 38-59 (228)
393 PRK14241 phosphate transporter 91.2 0.15 3.3E-06 50.0 2.9 22 15-36 32-53 (258)
394 cd03253 ABCC_ATM1_transporter 91.2 0.15 3.3E-06 49.0 2.8 22 15-36 29-50 (236)
395 cd01130 VirB11-like_ATPase Typ 91.2 0.16 3.5E-06 47.5 2.9 21 14-34 26-46 (186)
396 cd03252 ABCC_Hemolysin The ABC 91.2 0.16 3.4E-06 49.1 2.8 20 15-34 30-49 (237)
397 cd01131 PilT Pilus retraction 91.2 0.16 3.5E-06 48.1 2.8 18 16-33 4-21 (198)
398 TIGR01189 ccmA heme ABC export 91.2 0.17 3.7E-06 47.6 3.0 20 15-34 28-47 (198)
399 PRK13539 cytochrome c biogenes 91.2 0.16 3.5E-06 48.2 2.9 22 15-36 30-51 (207)
400 PF13191 AAA_16: AAA ATPase do 91.2 0.16 3.5E-06 46.3 2.7 23 12-34 23-45 (185)
401 cd03246 ABCC_Protease_Secretio 91.2 0.17 3.6E-06 46.7 2.9 22 15-36 30-51 (173)
402 cd01897 NOG NOG1 is a nucleola 91.2 0.17 3.7E-06 45.4 2.9 69 198-294 50-127 (168)
403 COG3638 ABC-type phosphate/pho 91.2 0.16 3.4E-06 49.8 2.8 26 11-37 29-54 (258)
404 cd03296 ABC_CysA_sulfate_impor 91.1 0.16 3.5E-06 49.2 2.8 20 15-34 30-49 (239)
405 PF02421 FeoB_N: Ferrous iron 91.1 0.17 3.6E-06 46.6 2.8 21 14-34 1-21 (156)
406 PRK13947 shikimate kinase; Pro 91.1 0.17 3.7E-06 46.0 2.9 21 15-35 3-23 (171)
407 cd03260 ABC_PstB_phosphate_tra 91.1 0.17 3.7E-06 48.5 3.0 22 15-36 28-49 (227)
408 cd03298 ABC_ThiQ_thiamine_tran 91.1 0.16 3.6E-06 48.0 2.8 20 15-34 26-45 (211)
409 cd03295 ABC_OpuCA_Osmoprotecti 91.1 0.16 3.5E-06 49.2 2.9 20 15-34 29-48 (242)
410 cd03268 ABC_BcrA_bacitracin_re 91.1 0.17 3.7E-06 47.8 2.9 20 15-34 28-47 (208)
411 PRK10771 thiQ thiamine transpo 91.0 0.16 3.6E-06 48.9 2.8 20 15-34 27-46 (232)
412 PRK11264 putative amino-acid A 91.0 0.17 3.7E-06 49.2 3.0 20 15-34 31-50 (250)
413 PRK15056 manganese/iron transp 91.0 0.17 3.7E-06 50.2 3.0 20 15-34 35-54 (272)
414 cd03267 ABC_NatA_like Similar 91.0 0.17 3.8E-06 49.0 3.0 20 15-34 49-68 (236)
415 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.0 0.18 3.9E-06 45.2 2.8 20 15-34 28-47 (144)
416 cd01857 HSR1_MMR1 HSR1/MMR1. 91.0 0.2 4.3E-06 44.5 3.1 26 9-34 79-104 (141)
417 cd03237 ABC_RNaseL_inhibitor_d 91.0 0.17 3.6E-06 49.7 2.8 20 15-34 27-46 (246)
418 PRK13541 cytochrome c biogenes 91.0 0.18 3.9E-06 47.3 3.0 22 15-36 28-49 (195)
419 PRK04182 cytidylate kinase; Pr 91.0 0.19 4E-06 45.9 3.0 20 15-34 2-21 (180)
420 cd03228 ABCC_MRP_Like The MRP 90.9 0.18 3.9E-06 46.3 2.9 20 15-34 30-49 (171)
421 TIGR03797 NHPM_micro_ABC2 NHPM 90.9 0.16 3.4E-06 57.1 3.0 24 15-38 481-504 (686)
422 COG1118 CysA ABC-type sulfate/ 90.9 0.16 3.6E-06 51.4 2.7 20 15-34 30-49 (345)
423 PRK11248 tauB taurine transpor 90.9 0.18 3.9E-06 49.7 3.0 23 11-34 26-48 (255)
424 cd04163 Era Era subfamily. Er 90.9 1.2 2.7E-05 38.8 8.2 34 198-231 54-95 (168)
425 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.9 0.17 3.6E-06 48.9 2.7 20 15-34 31-50 (238)
426 PRK10908 cell division protein 90.9 0.19 4E-06 48.1 3.0 20 15-34 30-49 (222)
427 cd03251 ABCC_MsbA MsbA is an e 90.9 0.18 3.8E-06 48.6 2.8 20 15-34 30-49 (234)
428 TIGR01184 ntrCD nitrate transp 90.9 0.18 3.8E-06 48.7 2.9 20 15-34 13-32 (230)
429 cd00267 ABC_ATPase ABC (ATP-bi 90.9 0.19 4.1E-06 45.4 2.9 23 14-36 26-48 (157)
430 PRK01184 hypothetical protein; 90.8 0.2 4.4E-06 46.3 3.2 20 15-34 3-22 (184)
431 TIGR01277 thiQ thiamine ABC tr 90.8 0.18 3.9E-06 47.9 2.8 20 15-34 26-45 (213)
432 PRK10895 lipopolysaccharide AB 90.8 0.19 4E-06 48.8 3.0 20 15-34 31-50 (241)
433 TIGR03015 pepcterm_ATPase puta 90.8 0.17 3.8E-06 49.4 2.8 22 15-36 45-66 (269)
434 PRK10247 putative ABC transpor 90.8 0.18 3.9E-06 48.5 2.9 20 15-34 35-54 (225)
435 PRK14245 phosphate ABC transpo 90.8 0.18 3.9E-06 49.2 2.8 23 11-34 28-50 (250)
436 TIGR02323 CP_lyasePhnK phospho 90.8 0.19 4E-06 49.1 3.0 20 15-34 31-50 (253)
437 PRK11124 artP arginine transpo 90.8 0.18 3.9E-06 48.9 2.9 20 15-34 30-49 (242)
438 PRK11247 ssuB aliphatic sulfon 90.8 0.19 4E-06 49.7 3.0 20 15-34 40-59 (257)
439 cd03245 ABCC_bacteriocin_expor 90.8 0.18 4E-06 48.0 2.8 20 15-34 32-51 (220)
440 PRK13638 cbiO cobalt transport 90.8 0.18 3.8E-06 50.0 2.8 20 15-34 29-48 (271)
441 TIGR00554 panK_bact pantothena 90.7 0.2 4.4E-06 50.6 3.2 27 11-37 60-86 (290)
442 TIGR02324 CP_lyasePhnL phospho 90.7 0.19 4E-06 48.1 2.9 20 15-34 36-55 (224)
443 cd03279 ABC_sbcCD SbcCD and ot 90.7 0.18 3.9E-06 48.1 2.7 24 15-38 30-54 (213)
444 cd03213 ABCG_EPDR ABCG transpo 90.7 0.2 4.3E-06 47.1 2.9 21 15-35 37-57 (194)
445 PLN02459 probable adenylate ki 90.7 0.32 6.9E-06 48.4 4.5 28 11-38 27-54 (261)
446 PRK10790 putative multidrug tr 90.6 0.21 4.6E-06 55.0 3.6 25 14-38 368-392 (592)
447 PRK11614 livF leucine/isoleuci 90.6 0.19 4.1E-06 48.6 2.8 20 15-34 33-52 (237)
448 TIGR03864 PQQ_ABC_ATP ABC tran 90.6 0.19 4.2E-06 48.5 2.9 20 15-34 29-48 (236)
449 PRK14250 phosphate ABC transpo 90.6 0.19 4.1E-06 48.8 2.9 20 15-34 31-50 (241)
450 TIGR02769 nickel_nikE nickel i 90.6 0.2 4.3E-06 49.5 3.0 20 15-34 39-58 (265)
451 PRK13538 cytochrome c biogenes 90.6 0.2 4.4E-06 47.3 3.0 20 15-34 29-48 (204)
452 PRK14737 gmk guanylate kinase; 90.6 0.24 5.3E-06 46.6 3.4 23 12-34 3-25 (186)
453 PLN02674 adenylate kinase 90.6 0.25 5.4E-06 48.7 3.6 26 13-38 31-56 (244)
454 TIGR00972 3a0107s01c2 phosphat 90.6 0.19 4.2E-06 48.9 2.9 20 15-34 29-48 (247)
455 cd03217 ABC_FeS_Assembly ABC-t 90.5 0.2 4.4E-06 47.2 2.8 20 15-34 28-47 (200)
456 PRK11300 livG leucine/isoleuci 90.5 0.19 4.2E-06 49.0 2.8 20 15-34 33-52 (255)
457 cd03233 ABC_PDR_domain1 The pl 90.5 0.2 4.3E-06 47.4 2.8 22 15-36 35-56 (202)
458 PF00406 ADK: Adenylate kinase 90.5 0.17 3.7E-06 45.4 2.2 20 18-37 1-20 (151)
459 PF00485 PRK: Phosphoribulokin 90.5 0.23 5E-06 46.6 3.2 23 16-38 2-24 (194)
460 TIGR01193 bacteriocin_ABC ABC- 90.4 0.25 5.5E-06 55.7 4.0 24 15-38 502-525 (708)
461 TIGR00958 3a01208 Conjugate Tr 90.4 0.23 5E-06 56.2 3.7 24 15-38 509-532 (711)
462 PRK14248 phosphate ABC transpo 90.4 0.2 4.3E-06 49.5 2.9 20 15-34 49-68 (268)
463 PRK11831 putative ABC transpor 90.4 0.2 4.3E-06 49.6 2.8 20 15-34 35-54 (269)
464 TIGR02528 EutP ethanolamine ut 90.4 0.39 8.4E-06 41.9 4.4 35 198-232 38-76 (142)
465 PRK09493 glnQ glutamine ABC tr 90.4 0.2 4.4E-06 48.4 2.9 22 15-36 29-50 (240)
466 PRK14240 phosphate transporter 90.4 0.2 4.4E-06 48.8 2.8 20 15-34 31-50 (250)
467 KOG0080|consensus 90.4 1 2.2E-05 41.7 7.1 71 198-296 63-133 (209)
468 PRK09544 znuC high-affinity zi 90.4 0.21 4.6E-06 49.1 3.0 20 15-34 32-51 (251)
469 cd01672 TMPK Thymidine monopho 90.4 0.22 4.9E-06 45.8 3.0 19 16-34 3-21 (200)
470 PRK14247 phosphate ABC transpo 90.3 0.21 4.5E-06 48.7 2.8 20 15-34 31-50 (250)
471 PRK05541 adenylylsulfate kinas 90.3 0.22 4.7E-06 45.9 2.8 22 13-34 7-28 (176)
472 TIGR01288 nodI ATP-binding ABC 90.3 0.21 4.6E-06 50.4 3.0 20 15-34 32-51 (303)
473 cd03240 ABC_Rad50 The catalyti 90.3 0.21 4.6E-06 47.5 2.8 21 15-35 24-44 (204)
474 TIGR01618 phage_P_loop phage n 90.3 0.24 5.3E-06 48.1 3.2 26 8-33 7-32 (220)
475 cd02020 CMPK Cytidine monophos 90.3 0.23 5E-06 43.6 2.8 21 16-36 2-22 (147)
476 cd03236 ABC_RNaseL_inhibitor_d 90.3 0.22 4.8E-06 49.2 3.0 23 15-37 28-50 (255)
477 TIGR03005 ectoine_ehuA ectoine 90.3 0.22 4.8E-06 48.6 3.0 20 15-34 28-47 (252)
478 TIGR03375 type_I_sec_LssB type 90.3 0.25 5.4E-06 55.6 3.8 24 15-38 493-516 (694)
479 PRK10575 iron-hydroxamate tran 90.3 0.22 4.7E-06 49.2 3.0 20 15-34 39-58 (265)
480 smart00072 GuKc Guanylate kina 90.2 0.26 5.7E-06 45.9 3.3 21 16-36 5-25 (184)
481 PRK13645 cbiO cobalt transport 90.2 0.21 4.6E-06 50.0 2.9 20 15-34 39-58 (289)
482 TIGR01188 drrA daunorubicin re 90.2 0.21 4.5E-06 50.4 2.9 20 15-34 21-40 (302)
483 PRK10744 pstB phosphate transp 90.2 0.21 4.6E-06 49.1 2.8 20 15-34 41-60 (260)
484 PRK14267 phosphate ABC transpo 90.2 0.21 4.6E-06 48.7 2.8 20 15-34 32-51 (253)
485 PRK08099 bifunctional DNA-bind 90.2 0.2 4.3E-06 52.9 2.7 33 9-41 215-247 (399)
486 PRK14274 phosphate ABC transpo 90.2 0.21 4.6E-06 49.0 2.8 23 11-34 37-59 (259)
487 PRK14273 phosphate ABC transpo 90.2 0.22 4.9E-06 48.6 3.0 22 15-36 35-56 (254)
488 cd03114 ArgK-like The function 90.2 0.23 4.9E-06 45.0 2.8 19 16-34 2-20 (148)
489 PRK14256 phosphate ABC transpo 90.2 0.22 4.7E-06 48.7 2.8 26 11-37 29-54 (252)
490 PRK09580 sufC cysteine desulfu 90.2 0.23 4.9E-06 48.3 2.9 20 15-34 29-48 (248)
491 PRK13650 cbiO cobalt transport 90.1 0.22 4.7E-06 49.7 2.9 22 15-36 35-56 (279)
492 TIGR03771 anch_rpt_ABC anchore 90.1 0.23 5E-06 47.7 2.9 20 15-34 8-27 (223)
493 TIGR03740 galliderm_ABC gallid 90.1 0.23 4.9E-06 47.6 2.9 20 15-34 28-47 (223)
494 TIGR03796 NHPM_micro_ABC1 NHPM 90.1 0.23 5E-06 56.0 3.4 24 15-38 507-530 (710)
495 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 90.1 0.23 5.1E-06 47.7 3.0 23 11-34 47-69 (224)
496 PRK14268 phosphate ABC transpo 90.1 0.22 4.8E-06 48.9 2.8 24 11-35 37-60 (258)
497 PRK13651 cobalt transporter AT 90.1 0.23 4.9E-06 50.4 3.0 20 15-34 35-54 (305)
498 cd03231 ABC_CcmA_heme_exporter 90.1 0.24 5.2E-06 46.7 3.0 20 15-34 28-47 (201)
499 PRK14238 phosphate transporter 90.1 0.22 4.8E-06 49.4 2.9 20 15-34 52-71 (271)
500 cd03290 ABCC_SUR1_N The SUR do 90.1 0.23 5E-06 47.3 2.9 20 15-34 29-48 (218)
No 1
>KOG0085|consensus
Probab=100.00 E-value=2.1e-88 Score=636.61 Aligned_cols=300 Identities=65% Similarity=1.004 Sum_probs=292.9
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCCCccCHHHHHHHh
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIR 88 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~~~~~~~~a~~i~ 88 (463)
..+++.|+||||+||||||||+||||||||.||+++++..++++||+|++.+|+++|+||+.|.|++..++++++|..++
T Consensus 35 ~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~lvyqnif~amqaMIrAMetL~I~y~~e~nk~~A~~vr 114 (359)
T KOG0085|consen 35 DARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKLVYQNIFTAMQAMIRAMETLKIPYKREENKAHASLVR 114 (359)
T ss_pred hhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhHhh
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccccceeEEEE
Q psy16468 89 SVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPF 168 (463)
Q Consensus 89 ~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T~Gi~e~~f 168 (463)
+.+.+....|...++.+|+.||.|||||+||+||+||||.||++||+++++||+.|+|.||.||+|+.|+|||||.|+.|
T Consensus 115 evd~ekVttfe~~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYylsdldria~~~ylPTqQDvLRvRvPTTGi~eypf 194 (359)
T KOG0085|consen 115 EVDVEKVTTFEKRYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYPF 194 (359)
T ss_pred hcchHHhhhhhHHHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhhhhhhhcCcccCcchhhhheeecCcccceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHH
Q psy16468 169 DLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK 248 (463)
Q Consensus 169 ~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl 248 (463)
.+.++.| +++|||||++|||||+|||+||++|+|+|+||+|||++.|.++.|||+||+
T Consensus 195 dl~~iif----------------------rmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESk 252 (359)
T KOG0085|consen 195 DLQKIIF----------------------RMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESK 252 (359)
T ss_pred chhhhee----------------------eeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH
Confidence 9999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHHH
Q psy16468 249 ALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFILR 328 (463)
Q Consensus 249 ~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~ 328 (463)
++|..|+..|||+++++| +|+||.|++++||..+ .+.+|||+|.||..|+++|++||++
T Consensus 253 ALFrTIi~yPWF~nssVI------------------lFLNKkDlLEekI~yS---Hl~~YFPe~~GP~qDa~AAreFILk 311 (359)
T KOG0085|consen 253 ALFRTIITYPWFQNSSVI------------------LFLNKKDLLEEKILYS---HLADYFPEFDGPKQDAQAAREFILK 311 (359)
T ss_pred HHHHHHhccccccCCceE------------------EEechhhhhhhhhhHH---HHHHhCcccCCCcccHHHHHHHHHH
Confidence 999999999999999999 9999999999999999 8999999999999999999999999
Q ss_pred Hh-ccCCCCCCcccccccCCCccc
Q psy16468 329 MT-STGRDRSARVHSANVRRPQSG 351 (463)
Q Consensus 329 ~f-~~~~~~~~~v~~H~vR~~~~~ 351 (463)
+| .+|.+.++.+|+|+.=...+.
T Consensus 312 m~~d~nPd~dKii~SHfTcATDT~ 335 (359)
T KOG0085|consen 312 MYVDMNPDSDKIIYSHFTCATDTE 335 (359)
T ss_pred HHHhhCCCccceeeeeeeecccch
Confidence 99 999999999999998766553
No 2
>KOG0082|consensus
Probab=100.00 E-value=2.7e-86 Score=667.02 Aligned_cols=298 Identities=43% Similarity=0.739 Sum_probs=283.8
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCCCccCHHHHHHHhc
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRS 89 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~~~~~~~~a~~i~~ 89 (463)
..+.+|+||||+||||||||+|||||||++||+.+|+..||++||.|++++|..|++||..+++++++|.....+..++.
T Consensus 30 ~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~~N~~~~~~~ll~a~~~~~i~~~~~~~~~d~~~~~~ 109 (354)
T KOG0082|consen 30 EKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIYSNIIQSLKALLRAMETLGINLDDPERENDAQKLTL 109 (354)
T ss_pred hhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999988877777764
Q ss_pred ccccc--cccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccccceeEEE
Q psy16468 90 VDFET--VTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYP 167 (463)
Q Consensus 90 ~~~~~--~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T~Gi~e~~ 167 (463)
..... .++++++++++|.+||+||+||+||+|+++|+|+||+.|||++++||++|+|.||++||||+|.||+||.++.
T Consensus 110 ~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~~ 189 (354)
T KOG0082|consen 110 LADAAEELGVFSPELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVEVE 189 (354)
T ss_pred hhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeEEE
Confidence 43222 3689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHH
Q psy16468 168 FDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEES 247 (463)
Q Consensus 168 f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~es 247 (463)
|++++.+| +++||||||+|||||+|||++|++||||||||+|||++.||+.+|||+||
T Consensus 190 F~~k~~~f----------------------~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS 247 (354)
T KOG0082|consen 190 FTIKGLKF----------------------RMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES 247 (354)
T ss_pred EEeCCCce----------------------EEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHH
Q psy16468 248 KALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFIL 327 (463)
Q Consensus 248 l~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~ 327 (463)
+.||++|||++||.+++++ |||||.|+|+||++.. |++.|||+|.|. +++++|.+||.
T Consensus 248 ~~LF~sI~n~~~F~~tsii------------------LFLNK~DLFeEKi~~~---~~~~~Fpdy~G~-~~~~~a~~yI~ 305 (354)
T KOG0082|consen 248 LKLFESICNNKWFANTSII------------------LFLNKKDLFEEKIKKV---PLTDCFPDYKGV-NTYEEAAKYIR 305 (354)
T ss_pred HHHHHHHhcCcccccCcEE------------------EEeecHHHHHHHhccC---chhhhCcCCCCC-CChHHHHHHHH
Confidence 9999999999999999999 9999999999999888 999999999999 89999999999
Q ss_pred HHh-ccCCCCCCcccccccCCCccc
Q psy16468 328 RMT-STGRDRSARVHSANVRRPQSG 351 (463)
Q Consensus 328 ~~f-~~~~~~~~~v~~H~vR~~~~~ 351 (463)
.+| ++++++++.+|+|......+.
T Consensus 306 ~kF~~l~~~~~k~iy~h~T~AtDT~ 330 (354)
T KOG0082|consen 306 KKFEELNKNKDKKIYVHFTCATDTQ 330 (354)
T ss_pred HHHHHHhcccCCcceEEEEeeccHH
Confidence 999 888877899999999887664
No 3
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=9e-75 Score=586.51 Aligned_cols=295 Identities=47% Similarity=0.782 Sum_probs=281.1
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCCCccCHHHHHHHhccccc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRSVDFE 93 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~~~~~~~~a~~i~~~~~~ 93 (463)
+|+||||+||||||||+||||++|++||+++|+..|+.+||.|++.+|+.|+++|+.++++++++++...++.+......
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~~~~~~~~~~~~i~~~~~~ 80 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPFGDPENEKDAKKILSFAPE 80 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999888888887766443
Q ss_pred -ccccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccccceeEEEEeeCC
Q psy16468 94 -TVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEE 172 (463)
Q Consensus 94 -~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T~Gi~e~~f~~~~ 172 (463)
....+++++++.|.+||+||+||+||.++++++|+|+++|||++++||++|+|.||++||+++|.||+|+.++.|.+++
T Consensus 81 ~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~ 160 (317)
T cd00066 81 LEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVETKFTIKN 160 (317)
T ss_pred ccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeEEEEEecc
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHH
Q psy16468 173 IRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK 252 (463)
Q Consensus 173 ~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~ 252 (463)
..+ .+||||||+++|+||.|||++|++||||||+|+|||.+.|+...|||+||+.+|+
T Consensus 161 ~~~----------------------~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~ 218 (317)
T cd00066 161 LKF----------------------RMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFD 218 (317)
T ss_pred eEE----------------------EEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHH
Confidence 888 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHHHHh-c
Q psy16468 253 TIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFILRMT-S 331 (463)
Q Consensus 253 ~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f-~ 331 (463)
+++++++|.++|++ ||+||.|+|++||+.+ |+++|||+|+|.++++++|.+||.++| +
T Consensus 219 ~i~~~~~~~~~pil------------------l~~NK~D~f~~ki~~~---~l~~~fp~y~g~~~~~~~~~~~i~~~F~~ 277 (317)
T cd00066 219 SICNSRWFANTSII------------------LFLNKKDLFEEKIKKS---PLTDYFPDYTGPPNDYEEAAKFIRKKFLD 277 (317)
T ss_pred HHHhCccccCCCEE------------------EEccChHHHHHhhcCC---CccccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999998 999999999997789999999999999 8
Q ss_pred cCCCCCCcccccccCCCccc
Q psy16468 332 TGRDRSARVHSANVRRPQSG 351 (463)
Q Consensus 332 ~~~~~~~~v~~H~vR~~~~~ 351 (463)
+.+...+.+|+|++....+.
T Consensus 278 ~~~~~~~~~~~~~t~a~Dt~ 297 (317)
T cd00066 278 LNRNPNKEIYPHFTCATDTE 297 (317)
T ss_pred hhcCCCCeEEEEeccccchH
Confidence 77666789999998887663
No 4
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=2.5e-74 Score=588.27 Aligned_cols=297 Identities=45% Similarity=0.730 Sum_probs=279.6
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCCCccCHHHHHHHhcc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRSV 90 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~~~~~~~~a~~i~~~ 90 (463)
.+++|+||||+||||||||+||||++|++||+.+|+..|+++||.|++++|+.|++||+.++++++++++...+..+.+.
T Consensus 19 ~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i~~~~~~~~~~~~~~~~~ 98 (342)
T smart00275 19 KREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNIPFEDPESILDIRIITEQ 98 (342)
T ss_pred hcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999988887667776654
Q ss_pred c---ccccccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccccceeEEE
Q psy16468 91 D---FETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYP 167 (463)
Q Consensus 91 ~---~~~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T~Gi~e~~ 167 (463)
. ......+++++++.|..||+||+||.||.++++|+|+|++.|||++++||++|+|+||++||+++|.||+|+.+..
T Consensus 99 ~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~ 178 (342)
T smart00275 99 FNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQETA 178 (342)
T ss_pred ccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhCCCCCCCHHHhhheeCCccceEEEE
Confidence 2 1223468899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHH
Q psy16468 168 FDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEES 247 (463)
Q Consensus 168 f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~es 247 (463)
|.+++..+ .+||||||+++|+||.|||++|++||||||+|+|||+++|+...|||+||
T Consensus 179 f~~~~~~~----------------------~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~es 236 (342)
T smart00275 179 FIVKKLFF----------------------RMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQES 236 (342)
T ss_pred EEECCeEE----------------------EEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHH
Confidence 99999888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHH
Q psy16468 248 KALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFIL 327 (463)
Q Consensus 248 l~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~ 327 (463)
+.+|+++|++++|.++|++ ||+||.|+|++||+.+ |+++|||+|+|+ +++++|.+||+
T Consensus 237 l~~f~~l~~~~~~~~~pii------------------l~~NK~D~~~~Kl~~~---~l~~~fp~y~g~-~~~~~~~~yi~ 294 (342)
T smart00275 237 LNLFESICNSRWFANTSII------------------LFLNKIDLFEEKIKKV---PLVDYFPDYKGP-NDYEAAAKFIK 294 (342)
T ss_pred HHHHHHHHcCccccCCcEE------------------EEEecHHhHHHHhCCC---chhccCCCCCCC-CCHHHHHHHHH
Confidence 9999999999999999999 9999999999999998 999999999998 68999999999
Q ss_pred HHh-ccCCC-CCCcccccccCCCccc
Q psy16468 328 RMT-STGRD-RSARVHSANVRRPQSG 351 (463)
Q Consensus 328 ~~f-~~~~~-~~~~v~~H~vR~~~~~ 351 (463)
++| ++++. +.+.+|.|.+....+.
T Consensus 295 ~~F~~~~~~~~~r~~y~h~t~a~Dt~ 320 (342)
T smart00275 295 QKFLRLNRNSSRKSIYHHFTCATDTR 320 (342)
T ss_pred HHHHHhccCCCCceEEEEEeeecccH
Confidence 999 77765 5689999998877553
No 5
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=3.6e-73 Score=589.88 Aligned_cols=297 Identities=42% Similarity=0.737 Sum_probs=262.3
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCC-------CccCHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYA-------DPTCEEK 83 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~-------~~~~~~~ 83 (463)
.+++||||||+||||||||+||||++|++||+++|+..|+++|+.|++++|+.|++++..++++++ ++++...
T Consensus 56 ~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (389)
T PF00503_consen 56 KREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILEALEELGIPFSFSESSQLNEENQEI 135 (389)
T ss_dssp HEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCH-SSS-TT--STTHHHH
T ss_pred hccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHHHHHHcCCCccccccccCCHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999987 5666677
Q ss_pred HHHHhcccccccc----------cCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCcccc
Q psy16468 84 AELIRSVDFETVT----------TFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDI 153 (463)
Q Consensus 84 a~~i~~~~~~~~~----------~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Di 153 (463)
+..+......... .+++++++.|..||+||+||+||.++++++|+|+++|||++++||++|+|+||++||
T Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~~~YFl~~l~RI~~~~Y~PT~~DI 215 (389)
T PF00503_consen 136 AEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDNAKYFLDNLDRIAQPDYIPTDEDI 215 (389)
T ss_dssp HHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TTHHHHHTTHHHHHSTTB---HHHH
T ss_pred HHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccccHHHHhhhhhhhcCCCccCCCCCe
Confidence 7777655433322 478999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeEEEEee-CCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchh
Q psy16468 154 LRVRVPTTGIIEYPFDL-EEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYD 232 (463)
Q Consensus 154 l~~r~~T~Gi~e~~f~~-~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~yd 232 (463)
|++|.+|+||.|+.|.+ ++..+ +++||||||+|||||+|||++|++||||||||+||
T Consensus 216 l~~r~~T~Gi~e~~f~~~~~~~~----------------------~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd 273 (389)
T PF00503_consen 216 LRCRVKTTGITEIDFNFSGSRKF----------------------RLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD 273 (389)
T ss_dssp HHS----SSEEEEEEEE-TTEEE----------------------EEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG
T ss_pred eeecCCCCCeeEEEEEeeccccc----------------------ceecCCCCchhhhhHHHHhccccEEEEeecccchh
Confidence 99999999999999999 88888 99999999999999999999999999999999999
Q ss_pred hhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCC-ccccCCC
Q psy16468 233 QILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMN-YTIVPPL 311 (463)
Q Consensus 233 q~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~-l~~~fp~ 311 (463)
|.++|+..+|||+||+.+|+++|+++||.++|++ |||||.|+|++||+.+ + +++|||+
T Consensus 274 q~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ii------------------l~lnK~D~f~~Kl~~~---~~l~~~fp~ 332 (389)
T PF00503_consen 274 QTLYEDPNTNRLHESLNLFESICNNPWFKNTPII------------------LFLNKIDLFEEKLKKG---PKLSKYFPD 332 (389)
T ss_dssp SBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEE------------------EEEE-HHHHHHHTTTS---SCGGGTSTT
T ss_pred hhhcccchHHHHHHHHHHHHHHHhCcccccCceE------------------EeeecHHHHHHHccCC---CchHhhCCC
Confidence 9999999999999999999999999999999999 9999999999999999 6 9999999
Q ss_pred CCCC-cccHHHHHHHHHHHh-ccCCCCC--CcccccccCCCcc
Q psy16468 312 HTGP-QRDAIAAREFILRMT-STGRDRS--ARVHSANVRRPQS 350 (463)
Q Consensus 312 f~g~-~~~~~~a~~fi~~~f-~~~~~~~--~~v~~H~vR~~~~ 350 (463)
|+|+ +++++.|.+||.++| ++..... +.+|.|.+....+
T Consensus 333 y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~ 375 (389)
T PF00503_consen 333 YTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDT 375 (389)
T ss_dssp GGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSH
T ss_pred CCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeeccc
Confidence 9998 589999999999999 7665444 9999998877643
No 6
>KOG0099|consensus
Probab=100.00 E-value=4.6e-71 Score=526.75 Aligned_cols=299 Identities=36% Similarity=0.583 Sum_probs=279.4
Q ss_pred cceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHcc--ccCCCccCHHHHHHHhc
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLK--IQYADPTCEEKAELIRS 89 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~--i~~~~~~~~~~a~~i~~ 89 (463)
-..|+||||+||||||||+|||||+|-+||+++|+..-.+-|+.|+-+++.+|+.||..++ +++++|+++-.++.|++
T Consensus 39 aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI~~Ni~eai~~iv~aM~~l~p~v~l~~~~~~~~~dYIls 118 (379)
T KOG0099|consen 39 ATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDIKNNIKEAILTIVGAMSNLVPPVELANPENQFRVDYILS 118 (379)
T ss_pred HhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcccCCcccchhHHHHHh
Confidence 3568999999999999999999999999999999999999999999999999999999999 66899999999999999
Q ss_pred ccccccccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccccceeEEEEe
Q psy16468 90 VDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFD 169 (463)
Q Consensus 90 ~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T~Gi~e~~f~ 169 (463)
+...+...+++|+.+.++.||+|.||++||+|++||||.|+|+|||+++++|.+++|+|+++||||||+-|+||.+++|.
T Consensus 119 ~~~~~~~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEyqLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet~Fq 198 (379)
T KOG0099|consen 119 VMNSPDFDYPPEFYDHVKTLWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFETKFQ 198 (379)
T ss_pred cCCCCcccCCHHHHHHHHHHhhhhhHHHHHhccCccchhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeEEEe
Confidence 98888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHH
Q psy16468 170 LEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA 249 (463)
Q Consensus 170 ~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~ 249 (463)
++..+| .|+||||||.||+||++||.+|++||||++.|+|++++.||+.+|||.||+.
T Consensus 199 Vdkv~F----------------------hMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~ 256 (379)
T KOG0099|consen 199 VDKVNF----------------------HMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALN 256 (379)
T ss_pred ccccce----------------------eeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCC------------cc
Q psy16468 250 LFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGP------------QR 317 (463)
Q Consensus 250 lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~------------~~ 317 (463)
||++|.|+.|++..++| |||||+|++++|+..+. ..+.+|||+|.+. ..
T Consensus 257 LFksiWnNRwL~tisvI------------------lFLNKqDllaeKi~Agk-~~i~dyFpEf~~y~~p~da~~es~~d~ 317 (379)
T KOG0099|consen 257 LFKSIWNNRWLRTISVI------------------LFLNKQDLLAEKILAGK-SKIEDYFPEFARYTTPEDATPESGEDP 317 (379)
T ss_pred HHHHHHhhhHHhhhhee------------------EEecHHHHHHHHHHcch-hhHHHhChHHhccCCccccCCCCCCCh
Confidence 99999999999999999 99999999999998873 2489999999854 12
Q ss_pred cHHHHHHHHHHHh-ccC---CCCCCcccccccCCCccc
Q psy16468 318 DAIAAREFILRMT-STG---RDRSARVHSANVRRPQSG 351 (463)
Q Consensus 318 ~~~~a~~fi~~~f-~~~---~~~~~~v~~H~vR~~~~~ 351 (463)
.+..|+-||+..| .+. -+..+-+|.|++=.+.+.
T Consensus 318 ~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe 355 (379)
T KOG0099|consen 318 RVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE 355 (379)
T ss_pred hhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence 4678999999999 442 345668899998777663
No 7
>KOG0082|consensus
Probab=100.00 E-value=9.6e-35 Score=293.34 Aligned_cols=128 Identities=45% Similarity=0.734 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhccCCCCCCcccccccCCCccccccccccccccchhhhccccccCCCCCCCChhhHhhcccCCCceeEE
Q psy16468 319 AIAAREFILRMTSTGRDRSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEY 398 (463)
Q Consensus 319 ~~~a~~fi~~~f~~~~~~~~~v~~H~vR~~~~~~~~~~~~~~~~~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~ 398 (463)
+++..++| .+.+|+..+.|+.++.+.++ ++|||+|++||+.|+|+||++||||+|++|+||+|+
T Consensus 125 ~~~i~~lW---------~d~~Iq~~~~r~~e~~l~Ds-------a~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~ 188 (354)
T KOG0082|consen 125 AEAIKELW---------KDPGIQACYERRREFQLNDS-------AKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVEV 188 (354)
T ss_pred HHHHHHHH---------cCHHHHHHHHcCCcCCCCcc-------HHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeEE
Confidence 45666777 68899999999998777776 899999999999999999999999999999999999
Q ss_pred EEeeC----------------------------------------------CchhHHHHHHHHHHHHhcCCCCCCcEEEE
Q psy16468 399 PFDLD----------------------------------------------GINRMEESKALFKTIITYPWFQHSSVILF 432 (463)
Q Consensus 399 ~f~~~----------------------------------------------~~nr~~esl~lF~~i~n~~~f~~~~iilf 432 (463)
.|.++ .+|||+||++||++|||++||.+|+||||
T Consensus 189 ~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLF 268 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILF 268 (354)
T ss_pred EEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEE
Confidence 99864 27999999999999999999999999999
Q ss_pred ecchhhhhhhhccCCccccCCcCCCCCCcC
Q psy16468 433 LNKKDLLEEKIMYSHLVDYFPEYDDHIIIE 462 (463)
Q Consensus 433 lNK~Dlf~~Ki~~~~l~~~Fp~y~g~~~~~ 462 (463)
|||.|||+|||+++|++.|||||+|+++.|
T Consensus 269 LNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~ 298 (354)
T KOG0082|consen 269 LNKKDLFEEKIKKVPLTDCFPDYKGVNTYE 298 (354)
T ss_pred eecHHHHHHHhccCchhhhCcCCCCCCChH
Confidence 999999999999999999999999997653
No 8
>KOG0085|consensus
Probab=100.00 E-value=1e-34 Score=273.88 Aligned_cols=182 Identities=46% Similarity=0.723 Sum_probs=147.1
Q ss_pred HHHHHHHHHhcCCCCCCCeeEecCCcccccccccc--ccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHH
Q psy16468 246 ESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHC--FENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAR 323 (463)
Q Consensus 246 esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~--~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~ 323 (463)
|.+.-|..++-.+.|.....+++||.-++||+... .+++.+.--+|. +|+.. |..+ -+.+.+
T Consensus 70 edrkgf~~lvyqnif~amqaMIrAMetL~I~y~~e~nk~~A~~vrevd~--ekVtt------------fe~~--yv~aik 133 (359)
T KOG0085|consen 70 EDRKGFTKLVYQNIFTAMQAMIRAMETLKIPYKREENKAHASLVREVDV--EKVTT------------FEKR--YVSAIK 133 (359)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhHhhhcch--HHhhh------------hhHH--HHHHHH
Confidence 34445555555556666777788999999999876 455555555553 22221 1111 133334
Q ss_pred HHHHHHhccCCCCCCcccccccCCCccccccccccccccchhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC
Q psy16468 324 EFILRMTSTGRDRSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD 403 (463)
Q Consensus 324 ~fi~~~f~~~~~~~~~v~~H~vR~~~~~~~~~~~~~~~~~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~ 403 (463)
..| .+.+|+.++.||.++.++++ ++|||++++||+.|+|+||.|||||.|+|||||.|++|++.
T Consensus 134 ~LW---------~D~GIqeCYdRRREyqLsDS-------akYylsdldria~~~ylPTqQDvLRvRvPTTGi~eypfdl~ 197 (359)
T KOG0085|consen 134 WLW---------RDPGIQECYDRRREYQLSDS-------AKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYPFDLQ 197 (359)
T ss_pred HHH---------hCcchHHHHHHHHHhhcchh-------hhHHhhhhhhhcCcccCcchhhhheeecCcccceecCcchh
Confidence 444 68899999999998877777 89999999999999999999999999999999999999864
Q ss_pred ----------------------------------------------CchhHHHHHHHHHHHHhcCCCCCCcEEEEecchh
Q psy16468 404 ----------------------------------------------GINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437 (463)
Q Consensus 404 ----------------------------------------------~~nr~~esl~lF~~i~n~~~f~~~~iilflNK~D 437 (463)
+.|||+||..||++|+..|||.++|+||||||+|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 3589999999999999999999999999999999
Q ss_pred hhhhhhccCCccccCCcCCCCC
Q psy16468 438 LLEEKIMYSHLVDYFPEYDDHI 459 (463)
Q Consensus 438 lf~~Ki~~~~l~~~Fp~y~g~~ 459 (463)
|+++||.+++|.+|||+|+||.
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~ 299 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPK 299 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCc
Confidence 9999999999999999999985
No 9
>KOG0099|consensus
Probab=99.95 E-value=8.7e-29 Score=237.12 Aligned_cols=131 Identities=37% Similarity=0.594 Sum_probs=112.2
Q ss_pred CCCCCCcccHHHHHHHHHHHhccCCCCCCcccccccCCCcccccccccccccc-chhhhccccccCCCCCCCChhhHhhc
Q psy16468 310 PLHTGPQRDAIAAREFILRMTSTGRDRSARVHSANVRRPQSGLGENHLLALHV-RHSYLGDLARIEDPGYMPTEQDILRA 388 (463)
Q Consensus 310 p~f~g~~~~~~~a~~fi~~~f~~~~~~~~~v~~H~vR~~~~~~~~~~~~~~~~-~~yfl~~l~ri~~~~Y~Pt~~Dil~~ 388 (463)
|+|.-++.-++.+...| .+.+|...|.| |.|+++.| |+|||+++++|.+++|+|++||||||
T Consensus 123 ~~~~~~~Ef~dHv~~lW---------~D~Gv~acyeR--------SnEyqLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrc 185 (379)
T KOG0099|consen 123 PDFDYPPEFYDHVKTLW---------EDEGVRACYER--------SNEYQLIDCAQYFLDKIDVIKQADYVPSDQDILRC 185 (379)
T ss_pred CcccCCHHHHHHHHHHh---------hhhhHHHHHhc--------cCccchhhHHHHHHHhhheecccCCCCcHHHHHHh
Confidence 55555544466677777 45566655555 55777887 99999999999999999999999999
Q ss_pred ccCCCceeEEEEeeC----------------------------------------------CchhHHHHHHHHHHHHhcC
Q psy16468 389 RQPTTGIIEYPFDLD----------------------------------------------GINRMEESKALFKTIITYP 422 (463)
Q Consensus 389 R~~T~gi~e~~f~~~----------------------------------------------~~nr~~esl~lF~~i~n~~ 422 (463)
|+-|+||.|++|.++ .+|||+|||.||++|||++
T Consensus 186 RvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR 265 (379)
T KOG0099|consen 186 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR 265 (379)
T ss_pred hhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh
Confidence 999999999999864 3689999999999999999
Q ss_pred CCCCCcEEEEecchhhhhhhhc--cCCccccCCcCCC
Q psy16468 423 WFQHSSVILFLNKKDLLEEKIM--YSHLVDYFPEYDD 457 (463)
Q Consensus 423 ~f~~~~iilflNK~Dlf~~Ki~--~~~l~~~Fp~y~g 457 (463)
|++..++||||||.|++++||. ++.|.+|||||.+
T Consensus 266 wL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~ 302 (379)
T KOG0099|consen 266 WLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFAR 302 (379)
T ss_pred HHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhc
Confidence 9999999999999999999997 4569999999976
No 10
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.94 E-value=2.5e-27 Score=246.53 Aligned_cols=108 Identities=43% Similarity=0.769 Sum_probs=89.4
Q ss_pred ccccccccc-chhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEee-C----------------------------
Q psy16468 354 ENHLLALHV-RHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDL-D---------------------------- 403 (463)
Q Consensus 354 ~~~~~~~~~-~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~-~---------------------------- 403 (463)
+.++++++| +.|||++++||++|+|+||++||||+|.+|+||.|+.|.+ +
T Consensus 183 ~~~~~~l~d~~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~ 262 (389)
T PF00503_consen 183 RRNEFQLPDNAKYFLDNLDRIAQPDYIPTDEDILRCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTA 262 (389)
T ss_dssp GGGGST--TTHHHHHTTHHHHHSTTB---HHHHHHS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESE
T ss_pred hhhcccccccHHHHhhhhhhhcCCCccCCCCCeeeecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccE
Confidence 334555565 9999999999999999999999999999999999999987 3
Q ss_pred ------------------CchhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhhhhccCC-ccccCCcCCCC--CCc
Q psy16468 404 ------------------GINRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSH-LVDYFPEYDDH--III 461 (463)
Q Consensus 404 ------------------~~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~Ki~~~~-l~~~Fp~y~g~--~~~ 461 (463)
++|||+|||.||++|||++||+++||||||||.|+|++||+.+| |++|||+|+|+ ++.
T Consensus 263 vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~ 341 (389)
T PF00503_consen 263 VIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDV 341 (389)
T ss_dssp EEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSH
T ss_pred EEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCH
Confidence 26899999999999999999999999999999999999999998 99999999987 554
No 11
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.92 E-value=5.7e-26 Score=232.39 Aligned_cols=120 Identities=47% Similarity=0.753 Sum_probs=106.3
Q ss_pred CCCcccccccCCCccccccccccccccchhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC------------
Q psy16468 336 RSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD------------ 403 (463)
Q Consensus 336 ~~~~v~~H~vR~~~~~~~~~~~~~~~~~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~------------ 403 (463)
.+.+|+..+.|+..+.+.++ +.|||++++||++|+|+||++|||++|.+|+||.|..|.++
T Consensus 122 ~D~~iq~~~~~~~~~~l~ds-------~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq 194 (342)
T smart00275 122 KDEGIQECYRRRNEFQLNDS-------ASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQETAFIVKKLFFRMFDVGGQ 194 (342)
T ss_pred CCHHHHHHHHhccccccccc-------hhHHHHHHHHHhCCCCCCCHHHhhheeCCccceEEEEEEECCeEEEEEecCCc
Confidence 45677776666665544444 89999999999999999999999999999999999988653
Q ss_pred ----------------------------------CchhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhhhhccCCcc
Q psy16468 404 ----------------------------------GINRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLV 449 (463)
Q Consensus 404 ----------------------------------~~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~Ki~~~~l~ 449 (463)
..|||+||+.+|+++||++||+++|++|||||.|+|++||+.+||+
T Consensus 195 r~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~ 274 (342)
T smart00275 195 RSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLV 274 (342)
T ss_pred hhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchh
Confidence 2589999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCcC
Q psy16468 450 DYFPEYDDHIIIE 462 (463)
Q Consensus 450 ~~Fp~y~g~~~~~ 462 (463)
+|||+|+|+++.|
T Consensus 275 ~~fp~y~g~~~~~ 287 (342)
T smart00275 275 DYFPDYKGPNDYE 287 (342)
T ss_pred ccCCCCCCCCCHH
Confidence 9999999986543
No 12
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.92 E-value=6.8e-26 Score=229.74 Aligned_cols=118 Identities=48% Similarity=0.771 Sum_probs=105.4
Q ss_pred CCCcccccccCCCcccccccccccccc-chhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC-----------
Q psy16468 336 RSARVHSANVRRPQSGLGENHLLALHV-RHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD----------- 403 (463)
Q Consensus 336 ~~~~v~~H~vR~~~~~~~~~~~~~~~~-~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~----------- 403 (463)
.+.+|+..+.|+.++ +++| +.|||++++||+.|+|+||++|||++|++|+||.|..|.++
T Consensus 99 ~d~~iq~~~~~r~e~--------~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgG 170 (317)
T cd00066 99 KDPGIQACYDRRNEF--------QLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVETKFTIKNLKFRMFDVGG 170 (317)
T ss_pred CCHHHHHHHHhcccc--------ccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeEEEEEecceEEEEECCCC
Confidence 366777777776655 4555 89999999999999999999999999999999999999753
Q ss_pred -----------------------------------CchhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhhhhccCCc
Q psy16468 404 -----------------------------------GINRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHL 448 (463)
Q Consensus 404 -----------------------------------~~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~Ki~~~~l 448 (463)
..|||.||+.+|+++|+++||.++|++||+||.|+|++||+.+||
T Consensus 171 q~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l 250 (317)
T cd00066 171 QRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPL 250 (317)
T ss_pred CcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCc
Confidence 148999999999999999999999999999999999999999999
Q ss_pred cccCCcCCC-CCCc
Q psy16468 449 VDYFPEYDD-HIII 461 (463)
Q Consensus 449 ~~~Fp~y~g-~~~~ 461 (463)
++|||+|+| +++.
T Consensus 251 ~~~fp~y~g~~~~~ 264 (317)
T cd00066 251 TDYFPDYTGPPNDY 264 (317)
T ss_pred cccCCCCCCCCCCH
Confidence 999999999 6654
No 13
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.68 E-value=4.5e-16 Score=144.54 Aligned_cols=87 Identities=29% Similarity=0.451 Sum_probs=80.5
Q ss_pred ccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhcc
Q psy16468 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFE 237 (463)
Q Consensus 158 ~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e 237 (463)
.||.|++...+.+++..+ .+||+|||.+-|.-|.+||.++++||||||.+
T Consensus 43 ~pT~g~~~~~i~~~~~~~----------------------~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDss-------- 92 (175)
T PF00025_consen 43 IPTIGFNIEEIKYKGYSL----------------------TIWDLGGQESFRPLWKSYFQNADGIIFVVDSS-------- 92 (175)
T ss_dssp EEESSEEEEEEEETTEEE----------------------EEEEESSSGGGGGGGGGGHTTESEEEEEEETT--------
T ss_pred CcccccccceeeeCcEEE----------------------EEEeccccccccccceeeccccceeEEEEecc--------
Confidence 378899999999999888 99999999999999999999999999999987
Q ss_pred CCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhc
Q psy16468 238 SENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 238 ~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+.+|+.||...+.++++++.+++.|++ +++||+|+..
T Consensus 93 --d~~~l~e~~~~L~~ll~~~~~~~~piL------------------Il~NK~D~~~ 129 (175)
T PF00025_consen 93 --DPERLQEAKEELKELLNDPELKDIPIL------------------ILANKQDLPD 129 (175)
T ss_dssp --GGGGHHHHHHHHHHHHTSGGGTTSEEE------------------EEEESTTSTT
T ss_pred --cceeecccccchhhhcchhhcccceEE------------------EEeccccccC
Confidence 456899999999999999999999999 9999999743
No 14
>KOG0070|consensus
Probab=99.67 E-value=1.1e-16 Score=147.40 Aligned_cols=86 Identities=34% Similarity=0.557 Sum_probs=81.8
Q ss_pred ccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhcc
Q psy16468 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFE 237 (463)
Q Consensus 158 ~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e 237 (463)
.||.|++.+.+.+++++| .+||||||.+.|.-|.|||.+..+||||||.+
T Consensus 46 vPTiGfnVE~v~ykn~~f----------------------~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~-------- 95 (181)
T KOG0070|consen 46 VPTIGFNVETVEYKNISF----------------------TVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSS-------- 95 (181)
T ss_pred CCccccceeEEEEcceEE----------------------EEEecCCCcccccchhhhccCCcEEEEEEeCC--------
Confidence 589999999999999999 99999999999999999999999999999966
Q ss_pred CCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhh
Q psy16468 238 SENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLF 293 (463)
Q Consensus 238 ~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~ 293 (463)
+..||.||.+.+..+++++.+.+.|++ ++.||+|+-
T Consensus 96 --Dr~Ri~eak~eL~~~l~~~~l~~~~ll------------------v~aNKqD~~ 131 (181)
T KOG0070|consen 96 --DRERIEEAKEELHRMLAEPELRNAPLL------------------VFANKQDLP 131 (181)
T ss_pred --cHHHHHHHHHHHHHHHcCcccCCceEE------------------EEechhhcc
Confidence 578999999999999999999999999 999999975
No 15
>KOG0074|consensus
Probab=99.65 E-value=4.3e-16 Score=137.53 Aligned_cols=86 Identities=26% Similarity=0.482 Sum_probs=72.9
Q ss_pred cccceeEEEEeeCC-ceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhcc
Q psy16468 159 PTTGIIEYPFDLEE-IRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFE 237 (463)
Q Consensus 159 ~T~Gi~e~~f~~~~-~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e 237 (463)
||.|++.....+.+ +++ .+||+||||+-|.-|.+||++|+.+|||+|..
T Consensus 47 pT~GFn~k~v~~~g~f~L----------------------nvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~-------- 96 (185)
T KOG0074|consen 47 PTNGFNTKKVEYDGTFHL----------------------NVWDIGGQRGIRPYWSNYYENVDGLIYVIDST-------- 96 (185)
T ss_pred ccCCcceEEEeecCcEEE----------------------EEEecCCccccchhhhhhhhccceEEEEEeCC--------
Confidence 67888888887766 666 99999999999999999999999999999944
Q ss_pred CCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhc
Q psy16468 238 SENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 238 ~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+..|.+|--+.+-++.....+...|++ +|.||+|++-
T Consensus 97 --D~krfeE~~~el~ELleeeKl~~vpvl------------------IfankQdllt 133 (185)
T KOG0074|consen 97 --DEKRFEEISEELVELLEEEKLAEVPVL------------------IFANKQDLLT 133 (185)
T ss_pred --chHhHHHHHHHHHHHhhhhhhhcccee------------------ehhhhhHHHh
Confidence 345666666777778888888999999 9999999764
No 16
>KOG0073|consensus
Probab=99.65 E-value=4.6e-16 Score=140.55 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=95.6
Q ss_pred cccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccC
Q psy16468 159 PTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFES 238 (463)
Q Consensus 159 ~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~ 238 (463)
||.|++.....+++..+ .+||||||++.|.-|.+||+.++++|||+|+|
T Consensus 46 pt~gf~Iktl~~~~~~L----------------------~iwDvGGq~~lr~~W~nYfestdglIwvvDss--------- 94 (185)
T KOG0073|consen 46 PTLGFQIKTLEYKGYTL----------------------NIWDVGGQKTLRSYWKNYFESTDGLIWVVDSS--------- 94 (185)
T ss_pred CccceeeEEEEecceEE----------------------EEEEcCCcchhHHHHHHhhhccCeEEEEEECc---------
Confidence 78899888999999888 99999999999999999999999999999987
Q ss_pred CccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhch----hhhhhccCCccccCCCCCC
Q psy16468 239 ENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQ----YNVILNCMNYTIVPPLHTG 314 (463)
Q Consensus 239 ~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~e----ki~~~~~~~l~~~fp~f~g 314 (463)
+.-||+|......+++....+.++|++ +++||+|+-.. -|... ..|...++.-+=
T Consensus 95 -D~~r~~e~~~~L~~lL~eerlaG~~~L------------------vlank~dl~~~l~~~~i~~~--~~L~~l~ks~~~ 153 (185)
T KOG0073|consen 95 -DRMRMQECKQELTELLVEERLAGAPLL------------------VLANKQDLPGALSLEEISKA--LDLEELAKSHHW 153 (185)
T ss_pred -hHHHHHHHHHHHHHHHhhhhhcCCceE------------------EEEecCcCccccCHHHHHHh--hCHHHhccccCc
Confidence 467999999999999999999999999 99999998621 12111 134444433221
Q ss_pred C--------cccHHHHHHHHHHHh
Q psy16468 315 P--------QRDAIAAREFILRMT 330 (463)
Q Consensus 315 ~--------~~~~~~a~~fi~~~f 330 (463)
+ ..+..++.+|+....
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHH
Confidence 1 135778888887665
No 17
>KOG0071|consensus
Probab=99.55 E-value=7.7e-15 Score=129.51 Aligned_cols=88 Identities=25% Similarity=0.479 Sum_probs=82.9
Q ss_pred ccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhcc
Q psy16468 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFE 237 (463)
Q Consensus 158 ~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e 237 (463)
+||+|++....++++.+| .+||||||...|+.|.|||.+.+++|||+|.+
T Consensus 46 ipTvGFnvetVtykN~kf----------------------NvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa-------- 95 (180)
T KOG0071|consen 46 IPTVGFNVETVTYKNVKF----------------------NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA-------- 95 (180)
T ss_pred ccccceeEEEEEeeeeEE----------------------eeeeccCchhhhHHHHhhccCCceEEEEEecc--------
Confidence 589999999999999999 99999999999999999999999999999976
Q ss_pred CCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhch
Q psy16468 238 SENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 238 ~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
..|||+||+..+.++++++.+.+.+++ ++.||+|+-..
T Consensus 96 --~~dr~eeAr~ELh~ii~~~em~~~~~L------------------vlANkQDlp~A 133 (180)
T KOG0071|consen 96 --DRDRIEEARNELHRIINDREMRDAIIL------------------ILANKQDLPDA 133 (180)
T ss_pred --chhhHHHHHHHHHHHhCCHhhhcceEE------------------EEecCcccccc
Confidence 459999999999999999999999999 99999997553
No 18
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.40 E-value=3.2e-12 Score=119.31 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=76.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+|||...+..|.++|.+++++|||+|+++. .++.++...+..+++.+.+.+.|++
T Consensus 64 ~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~----------~s~~~~~~~l~~~l~~~~~~~~pii----------- 122 (181)
T PLN00223 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELRDAVLL----------- 122 (181)
T ss_pred EEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcH----------HHHHHHHHHHHHHhcCHhhCCCCEE-----------
Confidence 9999999999999999999999999999998854 3577888889999988888899999
Q ss_pred cccccceeeecchhhhchh----hhhhc-cCCcc----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY----NVILN-CMNYT----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek----i~~~~-~~~l~----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
|++||+|+.... +.... +..+. -++|--.-...+++++.+||.+..
T Consensus 123 -------lv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 123 -------VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred -------EEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 999999975421 11110 00110 122222222346888888886654
No 19
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.38 E-value=4.2e-12 Score=117.44 Aligned_cols=102 Identities=19% Similarity=0.319 Sum_probs=75.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+|||...+..|.+||.+++++|||+|+++ ..+++++.+.+..+++.....+.|++
T Consensus 60 ~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~----------~~s~~~~~~~l~~~~~~~~~~~~pii----------- 118 (175)
T smart00177 60 TVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNEDELRDAVIL----------- 118 (175)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHhhCHhhcCCcEE-----------
Confidence 899999999999999999999999999999884 34577888899999887767789999
Q ss_pred cccccceeeecchhhhch----hhhhhccCCcc-------ccCCCCCCCcccHHHHHHHHHHH
Q psy16468 278 IHCFENVTFCNSVQLFSQ----YNVILNCMNYT-------IVPPLHTGPQRDAIAAREFILRM 329 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e----ki~~~~~~~l~-------~~fp~f~g~~~~~~~a~~fi~~~ 329 (463)
+++||.|+... .+.... .+. .++|--.-...+++++.+||.+.
T Consensus 119 -------lv~NK~Dl~~~~~~~~i~~~~--~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 119 -------VFANKQDLPDAMKAAEITEKL--GLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred -------EEEeCcCcccCCCHHHHHHHh--CccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999998542 121110 111 12332222235688888888654
No 20
>KOG0076|consensus
Probab=99.35 E-value=4.1e-13 Score=122.64 Aligned_cols=86 Identities=24% Similarity=0.410 Sum_probs=78.1
Q ss_pred ccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhcc
Q psy16468 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFE 237 (463)
Q Consensus 158 ~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e 237 (463)
.+|.|.+.....+.+..+ .+||+|||.+.|..|..||..+++|||++|.+
T Consensus 54 ~~tvgLnig~i~v~~~~l----------------------~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~-------- 103 (197)
T KOG0076|consen 54 TPTVGLNIGTIEVCNAPL----------------------SFWDLGGQESLRSLWKKYYWLAHGIIYVIDAT-------- 103 (197)
T ss_pred ecccceeecceeecccee----------------------EEEEcCChHHHHHHHHHHHHHhceeEEeecCC--------
Confidence 367888888888877666 89999999999999999999999999999965
Q ss_pred CCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhh
Q psy16468 238 SENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLF 293 (463)
Q Consensus 238 ~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~ 293 (463)
+..|++++...|++++.++.+.+.|++ +++||.|+-
T Consensus 104 --~~eR~~~~~t~~~~v~~~E~leg~p~L------------------~lankqd~q 139 (197)
T KOG0076|consen 104 --DRERFEESKTAFEKVVENEKLEGAPVL------------------VLANKQDLQ 139 (197)
T ss_pred --CHHHHHHHHHHHHHHHHHHHhcCCchh------------------hhcchhhhh
Confidence 567999999999999999999999999 999999973
No 21
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.30 E-value=2.5e-11 Score=113.31 Aligned_cols=105 Identities=17% Similarity=0.272 Sum_probs=74.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+||+...+..|.++|.+++++|||+|+++. +++.++...+..++....+.+.|++
T Consensus 64 ~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~----------~s~~~~~~~l~~~~~~~~~~~~pii----------- 122 (182)
T PTZ00133 64 TMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDR----------ERIGDAREELERMLSEDELRDAVLL----------- 122 (182)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhCHhhcCCCEE-----------
Confidence 9999999998899999999999999999998743 4567777888888877777789999
Q ss_pred cccccceeeecchhhhc----hhhhhhc-cCCccc----cCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFS----QYNVILN-CMNYTI----VPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~----eki~~~~-~~~l~~----~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+.. +.+.... +..+.. +++--.-...+++++.+||.+..
T Consensus 123 -------lv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 123 -------VFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred -------EEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 9999999853 1221110 001111 11211112346888888887654
No 22
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.29 E-value=3.3e-11 Score=112.45 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=59.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|+||+...+..|.+++.+++++|||+|.++ ..++.++...+..++....+.+.|++
T Consensus 64 ~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~----------~~~~~~~~~~l~~l~~~~~~~~~pil----------- 122 (184)
T smart00178 64 TTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD----------KERFAESKRELDALLSDEELATVPFL----------- 122 (184)
T ss_pred EEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc----------HHHHHHHHHHHHHHHcChhhcCCCEE-----------
Confidence 889999999889999999999999999999884 34567788888888887777889999
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||+|+.
T Consensus 123 -------iv~NK~Dl~ 131 (184)
T smart00178 123 -------ILGNKIDAP 131 (184)
T ss_pred -------EEEeCcccc
Confidence 999999974
No 23
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.28 E-value=2.6e-11 Score=111.55 Aligned_cols=69 Identities=26% Similarity=0.485 Sum_probs=60.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+||+...+..|.++|.+++++|||+|+++. ..+.++...+.++++.+.+.+.|++
T Consensus 56 ~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~----------~s~~~~~~~~~~~~~~~~~~~~pii----------- 114 (168)
T cd04149 56 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR----------DRIDEARQELHRIINDREMRDALLL----------- 114 (168)
T ss_pred EEEECCCCHHHHHHHHHHhccCCEEEEEEeCCch----------hhHHHHHHHHHHHhcCHhhcCCcEE-----------
Confidence 9999999988889999999999999999998842 4577888888899887777789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
|++||+|+..
T Consensus 115 -------lv~NK~Dl~~ 124 (168)
T cd04149 115 -------VFANKQDLPD 124 (168)
T ss_pred -------EEEECcCCcc
Confidence 9999999853
No 24
>KOG0072|consensus
Probab=99.28 E-value=3.5e-12 Score=113.31 Aligned_cols=87 Identities=22% Similarity=0.394 Sum_probs=80.1
Q ss_pred cccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhc
Q psy16468 157 RVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILF 236 (463)
Q Consensus 157 r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~ 236 (463)
-.||.|++...++++++++ .+||+|||.|.|.-|..||+|+++||||||.++
T Consensus 46 tkPtigfnve~v~yKNLk~----------------------~vwdLggqtSirPyWRcYy~dt~avIyVVDssd------ 97 (182)
T KOG0072|consen 46 TKPTIGFNVETVPYKNLKF----------------------QVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD------ 97 (182)
T ss_pred cCCCCCcCccccccccccc----------------------eeeEccCcccccHHHHHHhcccceEEEEEeccc------
Confidence 3589999999999999999 999999999999999999999999999999885
Q ss_pred cCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhh
Q psy16468 237 ESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLF 293 (463)
Q Consensus 237 e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~ 293 (463)
..|+.-|..+|.+++..+.++++.++ +|+||+|.-
T Consensus 98 ----~dris~a~~el~~mL~E~eLq~a~ll------------------v~anKqD~~ 132 (182)
T KOG0072|consen 98 ----RDRISIAGVELYSMLQEEELQHAKLL------------------VFANKQDYS 132 (182)
T ss_pred ----hhhhhhhHHHHHHHhccHhhcCceEE------------------EEeccccch
Confidence 45777799999999999999999999 999999964
No 25
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.27 E-value=2e-11 Score=111.02 Aligned_cols=68 Identities=28% Similarity=0.510 Sum_probs=60.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|.++|.+++++|||+|+++ ..+++++...+.+++..+.+.+.|++
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 105 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERIGEAREELQRMLNEDELRDAVLL----------- 105 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhcHHhcCCCEE-----------
Confidence 999999998888899999999999999999884 34678888889999887777889999
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||+|+.
T Consensus 106 -------lv~NK~Dl~ 114 (159)
T cd04150 106 -------VFANKQDLP 114 (159)
T ss_pred -------EEEECCCCC
Confidence 999999984
No 26
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.25 E-value=3.6e-11 Score=110.28 Aligned_cols=70 Identities=19% Similarity=0.458 Sum_probs=62.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+||+...+..|.++|.+++++|||+|.++ ..++.++...+..+...+.+.+.|++
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~----------~~s~~~~~~~l~~l~~~~~~~~~pil----------- 104 (167)
T cd04161 46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD----------DDRVQEVKEILRELLQHPRVSGKPIL----------- 104 (167)
T ss_pred EEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc----------hhHHHHHHHHHHHHHcCccccCCcEE-----------
Confidence 899999998889999999999999999999884 34788888899999988777899999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+...
T Consensus 105 -------iv~NK~Dl~~~ 115 (167)
T cd04161 105 -------VLANKQDKKNA 115 (167)
T ss_pred -------EEEeCCCCcCC
Confidence 99999998654
No 27
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.22 E-value=8.5e-11 Score=108.40 Aligned_cols=69 Identities=20% Similarity=0.396 Sum_probs=59.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..+|++++++|||+|.++ .+++.++...+..++++..+.+.|++
T Consensus 62 ~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~----------~~~~~~~~~~l~~~~~~~~~~~~p~v----------- 120 (174)
T cd04153 62 LMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD----------RERLPLTKEELYKMLAHEDLRKAVLL----------- 120 (174)
T ss_pred EEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhhcCCCEE-----------
Confidence 899999999888999999999999999999874 24566777788888877777789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 121 -------iv~NK~Dl~~ 130 (174)
T cd04153 121 -------VLANKQDLKG 130 (174)
T ss_pred -------EEEECCCCCC
Confidence 9999999854
No 28
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.20 E-value=1.1e-10 Score=107.12 Aligned_cols=69 Identities=25% Similarity=0.478 Sum_probs=60.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+||+...+..|.+++.+++++|||+|+++ .+++.++...+..++......+.|++
T Consensus 46 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 104 (169)
T cd04158 46 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH----------RDRVSEAHSELAKLLTEKELRDALLL----------- 104 (169)
T ss_pred EEEECCCChhcchHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcChhhCCCCEE-----------
Confidence 899999999889999999999999999999884 34677888888999887667788999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 105 -------lv~NK~Dl~~ 114 (169)
T cd04158 105 -------IFANKQDVAG 114 (169)
T ss_pred -------EEEeCcCccc
Confidence 9999999853
No 29
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.19 E-value=1.3e-10 Score=108.12 Aligned_cols=68 Identities=26% Similarity=0.462 Sum_probs=59.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+||+...++.|.+++.++++++||+|+++. +++.++...+..++......+.|++
T Consensus 66 ~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~----------~s~~~~~~~~~~i~~~~~~~~~pvi----------- 124 (190)
T cd00879 66 KTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADP----------ERFQESKEELDSLLSDEELANVPFL----------- 124 (190)
T ss_pred EEEECCCCHHHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHcCccccCCCEE-----------
Confidence 8999999988889999999999999999998743 4566778888888887777789999
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||+|+.
T Consensus 125 -------vv~NK~Dl~ 133 (190)
T cd00879 125 -------ILGNKIDLP 133 (190)
T ss_pred -------EEEeCCCCC
Confidence 999999985
No 30
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.17 E-value=1.5e-10 Score=106.35 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=57.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|.++|.++++++||+|.++ ..++.++...+..++......+.|++
T Consensus 61 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~i----------- 119 (173)
T cd04154 61 NIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD----------RLRLDDCKRELKELLQEERLAGATLL----------- 119 (173)
T ss_pred EEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhhcCCCEE-----------
Confidence 899999998888899999999999999999874 23566666777777776566789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 120 -------iv~nK~Dl~~ 129 (173)
T cd04154 120 -------ILANKQDLPG 129 (173)
T ss_pred -------EEEECccccc
Confidence 9999999864
No 31
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.15 E-value=1.8e-10 Score=104.29 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=59.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.++++++||+|.++. ..+.++...+..++......+.|++
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~i----------- 111 (167)
T cd04160 53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDR----------ERFEESKSALEKVLRNEALEGVPLL----------- 111 (167)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECchH----------HHHHHHHHHHHHHHhChhhcCCCEE-----------
Confidence 9999999998888999999999999999998743 2567778888888887777889999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 112 -------lv~NK~D~~~ 121 (167)
T cd04160 112 -------ILANKQDLPD 121 (167)
T ss_pred -------EEEEcccccc
Confidence 9999999754
No 32
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.11 E-value=6.8e-10 Score=101.31 Aligned_cols=69 Identities=28% Similarity=0.463 Sum_probs=56.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|++.-+..|..+++++++++||+|.++. .++.++...+..+.......+.|++
T Consensus 61 ~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~i----------- 119 (173)
T cd04155 61 NVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADK----------KRLEEAGAELVELLEEEKLAGVPVL----------- 119 (173)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhChhhcCCCEE-----------
Confidence 8999999988888899999999999999998842 3455566666677666556679999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 120 -------vv~nK~D~~~ 129 (173)
T cd04155 120 -------VFANKQDLAT 129 (173)
T ss_pred -------EEEECCCCcc
Confidence 9999999854
No 33
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.07 E-value=7.4e-10 Score=99.51 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=57.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCC--CCCeeEecCCccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWF--QHSMVDVGGQRSERR 275 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~--~~~~il~~~~~~~~v 275 (463)
.+||++|+...+..|..++.+++++|||+|.++. +++..+...++.+.+.+.+ .+.|++
T Consensus 48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~i--------- 108 (162)
T cd04157 48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDR----------LRLVVVKDELELLLNHPDIKHRRVPIL--------- 108 (162)
T ss_pred EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcH----------HHHHHHHHHHHHHHcCcccccCCCCEE---------
Confidence 8999999998899999999999999999998743 4555666677777776655 378999
Q ss_pred cccccccceeeecchhhhch
Q psy16468 276 KWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 276 ~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 109 ---------iv~NK~Dl~~~ 119 (162)
T cd04157 109 ---------FFANKMDLPDA 119 (162)
T ss_pred ---------EEEeCccccCC
Confidence 99999998653
No 34
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.07 E-value=7.2e-10 Score=100.03 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=56.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++.. .+.++...+..++....+.+.|++
T Consensus 46 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~pii----------- 104 (158)
T cd04151 46 QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD----------RLGTAKEELHAMLEEEELKGAVLL----------- 104 (158)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHhchhhcCCcEE-----------
Confidence 89999999988999999999999999999988542 334445556666666566789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 105 -------iv~nK~Dl~~ 114 (158)
T cd04151 105 -------VFANKQDMPG 114 (158)
T ss_pred -------EEEeCCCCCC
Confidence 9999999864
No 35
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.03 E-value=1.6e-09 Score=99.05 Aligned_cols=68 Identities=16% Similarity=0.405 Sum_probs=56.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+||+...+..|.+++.+++++|||+|.++. .++.++...+..+.... .+.|++
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~----------~s~~~~~~~l~~~~~~~--~~~pii----------- 103 (164)
T cd04162 47 ELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS----------ERLPLARQELHQLLQHP--PDLPLV----------- 103 (164)
T ss_pred EEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCC--CCCcEE-----------
Confidence 8999999998899999999999999999998853 25566667777776543 579999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 104 -------lv~NK~Dl~~~ 114 (164)
T cd04162 104 -------VLANKQDLPAA 114 (164)
T ss_pred -------EEEeCcCCcCC
Confidence 99999998654
No 36
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.02 E-value=3e-09 Score=96.33 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=56.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.++++++||.|+++ ...+++....+..+.+.....+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii----------- 110 (164)
T cd04175 52 EILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMI----------- 110 (164)
T ss_pred EEEECCCcccchhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 789999999999999999999999999999873 23345555666667655455678999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 111 -------lv~nK~Dl~~ 120 (164)
T cd04175 111 -------LVGNKCDLED 120 (164)
T ss_pred -------EEEECCcchh
Confidence 9999999864
No 37
>KOG0077|consensus
Probab=99.01 E-value=2.5e-10 Score=103.90 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=64.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
+.+|+||...-|+-|..||-.|++|+|+||.- +..|+.||+..+++++....+++.|++
T Consensus 67 tt~DLGGH~qArr~wkdyf~~v~~iv~lvda~----------d~er~~es~~eld~ll~~e~la~vp~l----------- 125 (193)
T KOG0077|consen 67 TTFDLGGHLQARRVWKDYFPQVDAIVYLVDAY----------DQERFAESKKELDALLSDESLATVPFL----------- 125 (193)
T ss_pred EEEccccHHHHHHHHHHHHhhhceeEeeeehh----------hHHHhHHHHHHHHHHHhHHHHhcCcce-----------
Confidence 88999999999999999999999999999965 467999999999999999999999999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
++.||+|...
T Consensus 126 -------ilgnKId~p~ 135 (193)
T KOG0077|consen 126 -------ILGNKIDIPY 135 (193)
T ss_pred -------eecccccCCC
Confidence 9999999754
No 38
>KOG0075|consensus
Probab=99.00 E-value=5.9e-10 Score=99.57 Aligned_cols=87 Identities=20% Similarity=0.387 Sum_probs=79.4
Q ss_pred ccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhcc
Q psy16468 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFE 237 (463)
Q Consensus 158 ~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e 237 (463)
.||.|++.++++-++.++ ++||+|||+..|..|..|...|++|+||||.+|
T Consensus 50 iptvGfnmrk~tkgnvti----------------------klwD~gGq~rfrsmWerycR~v~aivY~VDaad------- 100 (186)
T KOG0075|consen 50 IPTVGFNMRKVTKGNVTI----------------------KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD------- 100 (186)
T ss_pred cccccceeEEeccCceEE----------------------EEEecCCCccHHHHHHHHhhcCcEEEEEeecCC-------
Confidence 588999999999988888 999999999999999999999999999999884
Q ss_pred CCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhc
Q psy16468 238 SENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 238 ~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
...++.|+..+.+++..|.+.+.|++ ++.||.|+-.
T Consensus 101 ---~~k~~~sr~EL~~LL~k~~l~gip~L------------------VLGnK~d~~~ 136 (186)
T KOG0075|consen 101 ---PDKLEASRSELHDLLDKPSLTGIPLL------------------VLGNKIDLPG 136 (186)
T ss_pred ---cccchhhHHHHHHHhcchhhcCCcEE------------------EecccccCcc
Confidence 35677899999999999999999999 9999998643
No 39
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.97 E-value=2.8e-09 Score=99.25 Aligned_cols=69 Identities=29% Similarity=0.365 Sum_probs=55.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..+++++++++||+|+++. +++.++...+..+.......+.|++
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~~~~~~~~~~~~i~~~~~~~~~p~i----------- 113 (183)
T cd04152 55 HFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV----------ERMEEAKTELHKITRFSENQGVPVL----------- 113 (183)
T ss_pred EEEECCCcHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhhhhcCCCcEE-----------
Confidence 8999999988888999999999999999998853 3455566666666655444578999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 114 -------iv~NK~D~~~ 123 (183)
T cd04152 114 -------VLANKQDLPN 123 (183)
T ss_pred -------EEEECcCccc
Confidence 9999999864
No 40
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.95 E-value=4.8e-09 Score=92.80 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=57.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.++++++||+|+++.+ .+..+...+..++......+.|++
T Consensus 47 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~i----------- 105 (159)
T cd04159 47 KVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT----------ALEAAKNELHDLLEKPSLEGIPLL----------- 105 (159)
T ss_pred EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH----------HHHHHHHHHHHHHcChhhcCCCEE-----------
Confidence 89999999988999999999999999999987543 344556667777766666788999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 106 -------iv~nK~D~~~ 115 (159)
T cd04159 106 -------VLGNKNDLPG 115 (159)
T ss_pred -------EEEeCccccC
Confidence 9999999764
No 41
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.93 E-value=5.8e-09 Score=93.76 Aligned_cols=68 Identities=29% Similarity=0.437 Sum_probs=59.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|.++. +++.++...+..++..+...+.|++
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~pii----------- 105 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE----------ARLDESQKELKHILKNEHIKGVPVV----------- 105 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHhchhhcCCCEE-----------
Confidence 8999999998888999999999999999998743 3567777788888887777889999
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||.|+.
T Consensus 106 -------lv~nK~Dl~ 114 (160)
T cd04156 106 -------LLANKQDLP 114 (160)
T ss_pred -------EEEECcccc
Confidence 999999984
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.87 E-value=2e-08 Score=90.22 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=53.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++++|.|+++- ..+++....++.+.......+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~pii----------- 110 (163)
T cd04136 52 EILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQ----------SSFNDLQDLREQILRVKDTENVPMV----------- 110 (163)
T ss_pred EEEECCCccccchHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 7899999988888999999999999999998742 2344455555555544334578999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 111 -------lv~nK~Dl~~ 120 (163)
T cd04136 111 -------LVGNKCDLED 120 (163)
T ss_pred -------EEEECccccc
Confidence 9999999854
No 43
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.85 E-value=2e-08 Score=90.26 Aligned_cols=69 Identities=33% Similarity=0.502 Sum_probs=60.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|.++ ..++.++...+..++......+.|++
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~~~~~~~~~~~~~~~~~~~~pii----------- 104 (158)
T cd00878 46 TVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD----------RERIEEAKEELHKLLNEEELKGVPLL----------- 104 (158)
T ss_pred EEEECCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcccCCCcEE-----------
Confidence 899999998888899999999999999999873 34788888899988887666789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 105 -------iv~nK~D~~~ 114 (158)
T cd00878 105 -------IFANKQDLPG 114 (158)
T ss_pred -------EEeeccCCcc
Confidence 9999999865
No 44
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.84 E-value=2.3e-08 Score=89.29 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=52.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.+++++++|+|+++- ..+.+....+..+.......+.|++
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~----------~s~~~~~~~~~~i~~~~~~~~~pii----------- 110 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR----------KSFEDIHTYREQIKRVKDSDDVPMV----------- 110 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 7899999988888999999999999999998742 2233333444455443334578999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+...
T Consensus 111 -------vv~nK~Dl~~~ 121 (162)
T cd04138 111 -------LVGNKCDLAAR 121 (162)
T ss_pred -------EEEECcccccc
Confidence 99999998653
No 45
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.84 E-value=3.3e-08 Score=93.29 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=68.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHh---cCCCCCCCeeEecCCcccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII---TYPWFQHSMVDVGGQRSER 274 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~---~~~~~~~~~il~~~~~~~~ 274 (463)
.+||++|+..-+..|..++.+++++|+|+|+++ ...++++...+..+- ..+.-.+.|++
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~----------~~s~~~~~~~~~~i~~~~~~~~~~~~pii-------- 114 (201)
T cd04107 53 QLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR----------PSTFEAVLKWKADLDSKVTLPNGEPIPCL-------- 114 (201)
T ss_pred EEEECCCchhhhhhHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhcccCCCCCcEE--------
Confidence 899999998888889999999999999999873 334444443333332 22223578999
Q ss_pred ccccccccceeeecchhhhchh-hhhh----ccC--CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 275 RKWIHCFENVTFCNSVQLFSQY-NVIL----NCM--NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 275 v~~~~~~~~~l~lNK~D~~~ek-i~~~----~~~--~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+..+. +... .|. .+..+|+--.....+++++.+++.+..
T Consensus 115 ----------lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 115 ----------LLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred ----------EEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999986311 1110 000 122344433333457888888887766
No 46
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.81 E-value=2.8e-08 Score=94.74 Aligned_cols=104 Identities=7% Similarity=-0.027 Sum_probs=66.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..||.+++++|+|.|+++- ..++++.... ..+......+.|++
T Consensus 52 ~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~----------~Sf~~l~~w~-~~i~~~~~~~~pii----------- 109 (202)
T cd04120 52 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----------ETFDDLPKWM-KMIDKYASEDAELL----------- 109 (202)
T ss_pred EEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHH-HHHHHhCCCCCcEE-----------
Confidence 8999999998899999999999999999998843 2333343333 23333334578999
Q ss_pred cccccceeeecchhhhchh-hhhhc----cCCc--cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVILN----CMNY--TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~~~----~~~l--~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+..++ +.... +..+ ..+|.--.-...+++++..++.+..
T Consensus 110 -------lVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 110 -------LVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -------EEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999985422 21110 0011 1133322222346788887776655
No 47
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.81 E-value=7.4e-08 Score=88.89 Aligned_cols=105 Identities=14% Similarity=0.026 Sum_probs=65.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.+++++|+|.|+++- ..++....+.+.+-....-.+.|++
T Consensus 53 ~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pii----------- 111 (172)
T cd04141 53 DILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDR----------HSFQEASEFKKLITRVRLTEDIPLV----------- 111 (172)
T ss_pred EEEeCCCchhhHHHhHHHhhcCCEEEEEEECCch----------hHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 8899999988889999999999999999998732 2333333322222221122468999
Q ss_pred cccccceeeecchhhhchh-hhhhccCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVILNCMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~~~~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+..++ +.......+ ..||+--.-...+++++.+++..+.
T Consensus 112 -------lvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 112 -------LVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred -------EEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 999999986532 111000011 1233322222346888888887665
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.80 E-value=3.5e-08 Score=89.10 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=54.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|.|+++ ...+.+....+..+.......+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piv----------- 110 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN----------QQTFQDIKPMRDQIVRVKGYEKVPII----------- 110 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 889999998889999999999999999999884 23344555555555554444678999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 111 -------iv~nK~Dl~~ 120 (163)
T cd04176 111 -------LVGNKVDLES 120 (163)
T ss_pred -------EEEECccchh
Confidence 9999999854
No 49
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.80 E-value=2.9e-08 Score=87.60 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=50.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+++....+..+..... .+.|++
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~p~i----------- 109 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNR----------ESFENLDKWLKELKEYAP-ENIPII----------- 109 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CCCcEE-----------
Confidence 8999999988888999999999999999998742 223344444444443321 467889
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||.|+.
T Consensus 110 -------vv~nK~D~~ 118 (159)
T cd00154 110 -------LVGNKIDLE 118 (159)
T ss_pred -------EEEEccccc
Confidence 999999986
No 50
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.79 E-value=9.6e-08 Score=89.43 Aligned_cols=104 Identities=10% Similarity=0.077 Sum_probs=65.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++|+|+|+++- +.+++....+..+... .-.+.|++
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~s~~~~~~~~~~i~~~-~~~~~pii----------- 110 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNK----------ASFDNIRAWLTEIKEY-AQEDVVIM----------- 110 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCcEE-----------
Confidence 8999999988888899999999999999998743 2333334344444332 12368999
Q ss_pred cccccceeeecchhhhchhh-hhhccCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-VILNCMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-~~~~~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+..++. .......+ ..|++--.-...+++++..+|.+..
T Consensus 111 -------iv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 111 -------LLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred -------EEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999864321 11000011 1233332233346888888887776
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.78 E-value=1.4e-07 Score=87.31 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=49.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++|+|.|+++ ...+++....|...+... -.+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~w~~~i~~~-~~~~pii----------- 109 (175)
T cd01874 52 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH-CPKTPFL----------- 109 (175)
T ss_pred EEEECCCccchhhhhhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-CCCCCEE-----------
Confidence 899999998888899999999999999999873 222333333232222211 1368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 110 -------lvgnK~Dl~~~ 120 (175)
T cd01874 110 -------LVGTQIDLRDD 120 (175)
T ss_pred -------EEEECHhhhhC
Confidence 99999998654
No 52
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.78 E-value=5.7e-08 Score=88.90 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=50.9
Q ss_pred EEEecCCccccc-cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSER-RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR-~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+ ..|.+++.+++++|+|+|+++ ...+.+.....+.+.....-.+.|++
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~i---------- 113 (170)
T cd04115 54 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN----------MASFHSLPSWIEECEQHSLPNEVPRI---------- 113 (170)
T ss_pred EEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcCCCCCCEE----------
Confidence 899999987665 468899999999999999873 22233344444444443334678999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+...
T Consensus 114 --------iv~nK~Dl~~~ 124 (170)
T cd04115 114 --------LVGNKCDLREQ 124 (170)
T ss_pred --------EEEECccchhh
Confidence 99999998653
No 53
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.74 E-value=1.5e-07 Score=92.54 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=71.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCC--------CCCCeeEecC
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPW--------FQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~--------~~~~~il~~~ 269 (463)
.+||++|+...+..|..++.+.+++|+|.|+++ ...+++...+++.+....+ ..+.|++
T Consensus 51 ~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI--- 117 (247)
T cd04143 51 DILDTSGNHPFPAMRRLSILTGDVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPMV--- 117 (247)
T ss_pred EEEECCCChhhhHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEE---
Confidence 899999998777777778899999999999883 2345566667777765433 3578999
Q ss_pred Cccccccccccccceeeecchhhhchh-h-----hhhcc-CCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQY-N-----VILNC-MNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~ek-i-----~~~~~-~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+..++ + ..... ..-..+|+--.-...+++++.++|....
T Consensus 118 ---------------ivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 118 ---------------ICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ---------------EEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999987521 1 11100 0012244444333457899999998876
No 54
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.74 E-value=1.1e-07 Score=86.28 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=50.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+.+....++.+-... -.+.|++
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~l~~~~~~~~~~~-~~~~~~i----------- 111 (166)
T cd01869 54 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLQEIDRYA-SENVNKL----------- 111 (166)
T ss_pred EEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCCCcEE-----------
Confidence 8999999988888899999999999999998742 23334444444443221 2357899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+..+
T Consensus 112 -------iv~nK~Dl~~~ 122 (166)
T cd01869 112 -------LVGNKCDLTDK 122 (166)
T ss_pred -------EEEEChhcccc
Confidence 99999998653
No 55
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.74 E-value=2.2e-07 Score=89.44 Aligned_cols=103 Identities=7% Similarity=-0.040 Sum_probs=66.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..+|.+++++|+|.|+++-+ .++.....++.+... ..+.|++
T Consensus 65 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~----------s~~~i~~w~~~i~~~--~~~~pii----------- 121 (219)
T PLN03071 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL----------TYKNVPTWHRDLCRV--CENIPIV----------- 121 (219)
T ss_pred EEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH----------HHHHHHHHHHHHHHh--CCCCcEE-----------
Confidence 89999999888899999999999999999988432 223233333444322 2468999
Q ss_pred cccccceeeecchhhhchhhhhh--c-cC-CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVIL--N-CM-NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~--~-~~-~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+........ . +. .-..||+--.-...+++++..|+.++.
T Consensus 122 -------lvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 122 -------LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred -------EEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 9999999854322110 0 00 011234433333346888888887666
No 56
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.74 E-value=1.4e-07 Score=86.08 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=52.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++.++++|.|+++-+ -++.....++.+.....-.+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii----------- 110 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA----------SLNELGELREQVLRIKDSDNVPMV----------- 110 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCCEE-----------
Confidence 88999999988999999999999999999988422 233333344444433333478999
Q ss_pred cccccceeeecchhhhchh
Q psy16468 278 IHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek 296 (463)
+++||.|+...+
T Consensus 111 -------iv~nK~D~~~~~ 122 (168)
T cd04177 111 -------LVGNKADLEDDR 122 (168)
T ss_pred -------EEEEChhccccC
Confidence 999999986543
No 57
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.73 E-value=1.1e-07 Score=87.45 Aligned_cols=67 Identities=9% Similarity=0.000 Sum_probs=50.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+||+...+..|..+|+++++++||+|.++- ..++....+++.+.. ..+.|++
T Consensus 57 ~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~----------~s~~~~~~~~~~~~~---~~~~p~i----------- 112 (169)
T cd01892 57 ILREVGEDEVAILLNDAELAACDVACLVYDSSDP----------KSFSYCAEVYKKYFM---LGEIPCL----------- 112 (169)
T ss_pred EEEecCCcccccccchhhhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHhcc---CCCCeEE-----------
Confidence 7899999988888999999999999999998742 223333344443322 1368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+..+
T Consensus 113 -------iv~NK~Dl~~~ 123 (169)
T cd01892 113 -------FVAAKADLDEQ 123 (169)
T ss_pred -------EEEEccccccc
Confidence 99999998543
No 58
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.72 E-value=8e-08 Score=90.24 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=51.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||..-+..|..+|.+++++|+|.|+++-+ .+++....|...+.. ...+.|++
T Consensus 54 ~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~----------Sf~~~~~~w~~~i~~-~~~~~pii----------- 111 (191)
T cd01875 54 NLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS----------SYENVRHKWHPEVCH-HCPNVPIL----------- 111 (191)
T ss_pred EEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHh-hCCCCCEE-----------
Confidence 89999999888889999999999999999988432 344443333332222 12478999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
|+.||.|+..+
T Consensus 112 -------lvgNK~DL~~~ 122 (191)
T cd01875 112 -------LVGTKKDLRND 122 (191)
T ss_pred -------EEEeChhhhcC
Confidence 99999998543
No 59
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.72 E-value=8.1e-08 Score=90.69 Aligned_cols=103 Identities=10% Similarity=-0.016 Sum_probs=69.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|.+++.+++++++|+|+++- ..+++....++.+... ....|++
T Consensus 58 ~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~----------~s~~~~~~~~~~i~~~--~~~~pii----------- 114 (199)
T cd04110 58 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG----------ESFVNVKRWLQEIEQN--CDDVCKV----------- 114 (199)
T ss_pred EEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCCEE-----------
Confidence 8999999988888999999999999999998742 2344455555555432 2467889
Q ss_pred cccccceeeecchhhhchhhhh-h----ccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVI-L----NCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~-~----~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||+|+...+... . .+..+ ..+|+--.....+++++.++|...+
T Consensus 115 -------vVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 115 -------LVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred -------EEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 999999986532110 0 00011 2345544444457888888888877
No 60
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.71 E-value=7.6e-08 Score=87.50 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=51.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++++++||+|+++ ...+++....++.+... ...+.|++
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~pii----------- 110 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTY-SWDNAQVI----------- 110 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCCEE-----------
Confidence 899999998888899999999999999999873 22344444444444322 23467899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+..+
T Consensus 111 -------vv~nK~Dl~~~ 121 (165)
T cd01865 111 -------LVGNKCDMEDE 121 (165)
T ss_pred -------EEEECcccCcc
Confidence 99999998654
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.70 E-value=1.1e-07 Score=85.37 Aligned_cols=68 Identities=9% Similarity=0.118 Sum_probs=52.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|.|+++. +.+.+....+..+.... -.+.|++
T Consensus 52 ~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~ii----------- 109 (161)
T cd01861 52 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR----------QSFDNTDKWIDDVRDER-GNDVIIV----------- 109 (161)
T ss_pred EEEECCCcHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CCCCEEE-----------
Confidence 8999999988888899999999999999998742 33444445555554322 2368999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 110 -------lv~nK~D~~~ 119 (161)
T cd01861 110 -------LVGNKTDLSD 119 (161)
T ss_pred -------EEEEChhccc
Confidence 9999999853
No 62
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.70 E-value=8.5e-08 Score=86.27 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=53.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.++++++||+|+++- ..+..+...+..+..... .+.|++
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~~ii----------- 110 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSE----------ESFEKAKSWVKELQRNAS-PNIIIA----------- 110 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCC-CCCeEE-----------
Confidence 8999999988888899999999999999998732 334555566666554432 568899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 111 -------vv~nK~D~~~ 120 (163)
T cd01860 111 -------LVGNKADLES 120 (163)
T ss_pred -------EEEECccccc
Confidence 9999999764
No 63
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.70 E-value=9.3e-08 Score=85.69 Aligned_cols=69 Identities=9% Similarity=0.093 Sum_probs=52.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|..++.+++++++|+++++ ...+......+..+.......+.|++
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 109 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD----------MESFTATAEFREQILRVKDDDNVPLL----------- 109 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 889999998888889999999999999999773 12233344444444443334578999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 110 -------iv~NK~D~~~ 119 (164)
T cd04139 110 -------LVGNKCDLED 119 (164)
T ss_pred -------EEEEcccccc
Confidence 9999999876
No 64
>PTZ00369 Ras-like protein; Provisional
Probab=98.70 E-value=1.2e-07 Score=88.72 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=66.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++-+ .+++.....+.+.+...-.+.|++
T Consensus 56 ~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~----------s~~~~~~~~~~i~~~~~~~~~pii----------- 114 (189)
T PTZ00369 56 DILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS----------SFEEIASFREQILRVKDKDRVPMI----------- 114 (189)
T ss_pred EEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 78999999988999999999999999999988432 333444444555443334578999
Q ss_pred cccccceeeecchhhhchh-hhh----hccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVI----LNCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~----~~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+..+. +.. ..+..+ ..+|+--.-...+++++..++.+..
T Consensus 115 -------iv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 115 -------LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred -------EEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 999999975421 111 000011 1123322222345777777776665
No 65
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.69 E-value=2.9e-07 Score=83.59 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=52.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.+++++++|.|+++ .+.+++....++.+-.. ...+.|++
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~-~~~~~~ii----------- 109 (161)
T cd04117 52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISS----------ERSYQHIMKWVSDVDEY-APEGVQKI----------- 109 (161)
T ss_pred EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEE-----------
Confidence 889999998888889999999999999999883 23444555555544432 23468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 110 -------lvgnK~Dl~~~ 120 (161)
T cd04117 110 -------LIGNKADEEQK 120 (161)
T ss_pred -------EEEECcccccc
Confidence 99999998654
No 66
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.69 E-value=1e-07 Score=86.64 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=50.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++- ..++......+.+... .-.+.|++
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~ii----------- 111 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNL-TNPNTVIF----------- 111 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCeEE-----------
Confidence 8999999988888899999999999999998842 2233333333333221 12357899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 112 -------iv~nK~Dl~~~ 122 (166)
T cd04122 112 -------LIGNKADLEAQ 122 (166)
T ss_pred -------EEEECcccccc
Confidence 99999998654
No 67
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.69 E-value=7e-08 Score=88.66 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=52.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++++++++|||.|+++ ...+.+....+..+.......+.|++
T Consensus 66 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii----------- 124 (180)
T cd04127 66 QLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN----------EQSFLNVRNWMSQLQTHAYCENPDIV----------- 124 (180)
T ss_pred EEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEE-----------
Confidence 899999998888899999999999999999873 22333344444445443334578899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+..+
T Consensus 125 -------iv~nK~Dl~~~ 135 (180)
T cd04127 125 -------LCGNKADLEDQ 135 (180)
T ss_pred -------EEEeCccchhc
Confidence 99999998653
No 68
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.69 E-value=4.3e-07 Score=85.68 Aligned_cols=103 Identities=11% Similarity=-0.014 Sum_probs=69.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++|+|.|+++ .+.+++....++.+... ..+.|++
T Consensus 58 ~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~----------~~Sf~~~~~w~~~i~~~--~~~~pii----------- 114 (189)
T cd04121 58 QLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN----------RWSFDGIDRWIKEIDEH--APGVPKI----------- 114 (189)
T ss_pred EEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCCCCEE-----------
Confidence 889999999889999999999999999999883 34555555556666433 2478999
Q ss_pred cccccceeeecchhhhchhhh-hh----ccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNV-IL----NCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~-~~----~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
|+.||.|+...+.- .. .|... ..||.--.-...+++++.+++.+..
T Consensus 115 -------lVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 115 -------LVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred -------EEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999998543211 00 00001 0233322223346888888888766
No 69
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.68 E-value=1e-07 Score=85.96 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=51.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|.|+++- ..+++....++.+.......+.|++
T Consensus 51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~pii----------- 109 (164)
T smart00173 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDR----------QSFEEIKKFREQILRVKDRDDVPIV----------- 109 (164)
T ss_pred EEEECCCcccchHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 7899999988888899999999999999998732 2233444444444443333478999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
++.||.|+..
T Consensus 110 -------~v~nK~Dl~~ 119 (164)
T smart00173 110 -------LVGNKCDLES 119 (164)
T ss_pred -------EEEECccccc
Confidence 9999999854
No 70
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.68 E-value=1.5e-07 Score=87.08 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=50.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++|+|.|+++- +.+.+....+...+... ..+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~sf~~~~~~~~~~~~~~-~~~~pii----------- 109 (174)
T cd01871 52 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFENVRAKWYPEVRHH-CPNTPII----------- 109 (174)
T ss_pred EEEECCCchhhhhhhhhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh-CCCCCEE-----------
Confidence 8999999988888999999999999999998842 23333333222222221 2368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 110 -------lvgnK~Dl~~~ 120 (174)
T cd01871 110 -------LVGTKLDLRDD 120 (174)
T ss_pred -------EEeeChhhccC
Confidence 99999998654
No 71
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.67 E-value=3.9e-07 Score=83.42 Aligned_cols=103 Identities=7% Similarity=-0.022 Sum_probs=66.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||......|.+++.+++++|+|.|+++ .+.++.....+..+.... .++|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~pii----------- 108 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS----------RVTYKNVPNWHRDLVRVC--GNIPIV----------- 108 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC--CCCcEE-----------
Confidence 899999998777778889999999999999873 223333333444443322 279999
Q ss_pred cccccceeeecchhhhchhhhhhc---cC-CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN---CM-NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~---~~-~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+....+.... +. .-..+|+--.-...+++++.+++.++.
T Consensus 109 -------iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 109 -------LCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred -------EEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 99999998644332110 00 111245444444456888888887665
No 72
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.67 E-value=1.7e-07 Score=84.30 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=52.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|..++.+++++++|+|+++- +.+++....+..+.....-.+.|++
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~----------- 110 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRR----------DTFTNLETWLNELETYSTNNDIVKM----------- 110 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhCCCCCCcEE-----------
Confidence 8999999988888899999999999999998742 2344444455555544444578899
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||.|+.
T Consensus 111 -------iv~nK~D~~ 119 (161)
T cd01863 111 -------LVGNKIDKE 119 (161)
T ss_pred -------EEEECCccc
Confidence 999999986
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.66 E-value=2.2e-07 Score=83.74 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=48.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.++++++++++||+|+++-+ .+.+....++.+.... .+.|++
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~--~~~p~i----------- 111 (164)
T cd04101 55 FIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKA----------SFENCSRWVNKVRTAS--KHMPGV----------- 111 (164)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhC--CCCCEE-----------
Confidence 89999999887888999999999999999987432 2222333333333221 458999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 112 -------lv~nK~Dl~~ 121 (164)
T cd04101 112 -------LVGNKMDLAD 121 (164)
T ss_pred -------EEEECccccc
Confidence 9999999854
No 74
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.66 E-value=1.9e-07 Score=84.64 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=65.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHH---hcCCCCCCCeeEecCCcccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTI---ITYPWFQHSMVDVGGQRSER 274 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i---~~~~~~~~~~il~~~~~~~~ 274 (463)
.+||++|+......|..++.+++++|||+|+++- ..+++....++.+ +......+.|++
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~i-------- 113 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP----------KSFESLDSWRDEFLIQASPSDPENFPFV-------- 113 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCccCCCCceEE--------
Confidence 8899999988888999999999999999998732 1222232333332 322334578999
Q ss_pred ccccccccceeeecchhhhchh-h-----hhhccC--CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 275 RKWIHCFENVTFCNSVQLFSQY-N-----VILNCM--NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 275 v~~~~~~~~~l~lNK~D~~~ek-i-----~~~~~~--~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+..++ + ... +. ....+|+--.-...+++++.++|.+..
T Consensus 114 ----------lv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 114 ----------VLGNKIDLEEKRQVSTKKAQQW-CQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred ----------EEEECcccccccccCHHHHHHH-HHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999997321 1 110 01 112344433333346777777776654
No 75
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.64 E-value=2.1e-07 Score=90.14 Aligned_cols=68 Identities=7% Similarity=0.091 Sum_probs=51.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...++.|..+|.+++++|+|.|+++- ..++.....|...+.. ...+.|++
T Consensus 52 ~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~----------~Sf~~i~~~w~~~~~~-~~~~~pii----------- 109 (222)
T cd04173 52 NMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRP----------ETLDSVLKKWQGETQE-FCPNAKVV----------- 109 (222)
T ss_pred EEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-hCCCCCEE-----------
Confidence 8899999988888899999999999999998853 3344444444433322 23578999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
|+.||.|+..
T Consensus 110 -------LVgnK~DL~~ 119 (222)
T cd04173 110 -------LVGCKLDMRT 119 (222)
T ss_pred -------EEEECccccc
Confidence 9999999865
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.63 E-value=1.4e-07 Score=84.27 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=49.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++-+ .+++....++.+..... .+.|++
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~pii----------- 109 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDAD----------SFQKVKKWIKELKQMRG-NNISLV----------- 109 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhCC-CCCeEE-----------
Confidence 89999999888888999999999999999987543 23333333333322211 268999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 110 -------iv~nK~D~~~ 119 (162)
T cd04123 110 -------IVGNKIDLER 119 (162)
T ss_pred -------EEEECccccc
Confidence 9999999874
No 77
>PLN00023 GTP-binding protein; Provisional
Probab=98.63 E-value=5.7e-07 Score=91.47 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=31.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++||...+..|.++|.+++++|+|.|+++
T Consensus 86 qIWDTAGqErfrsL~~~yyr~AdgiILVyDITd 118 (334)
T PLN00023 86 ELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ 118 (334)
T ss_pred EEEECCCChhhhhhhHHhccCCCEEEEEEeCCC
Confidence 899999999999999999999999999999985
No 78
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.63 E-value=2.2e-07 Score=84.68 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=50.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|.+++.+++++|||.|+++- ..+.+....+..+.... -.+.|++
T Consensus 55 ~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~i----------- 112 (167)
T cd01867 55 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------KSFENIRNWMRNIEEHA-SEDVERM----------- 112 (167)
T ss_pred EEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCCCcEE-----------
Confidence 8899999988888899999999999999998742 12333333344433221 2468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
++.||.|+.+
T Consensus 113 -------iv~nK~Dl~~ 122 (167)
T cd01867 113 -------LVGNKCDMEE 122 (167)
T ss_pred -------EEEECccccc
Confidence 9999999875
No 79
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.63 E-value=1.5e-07 Score=84.70 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=53.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+.+...-.+.|++
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~pii----------- 111 (164)
T cd04145 53 DILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDR----------GSFEEVDKFHTQILRVKDRDEFPMI----------- 111 (164)
T ss_pred EEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhCCCCCCEE-----------
Confidence 8899999988888888999999999999998842 2344444555555543333468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 112 -------iv~NK~Dl~~~ 122 (164)
T cd04145 112 -------LVGNKADLEHQ 122 (164)
T ss_pred -------EEeeCcccccc
Confidence 99999998653
No 80
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.62 E-value=1.4e-07 Score=89.85 Aligned_cols=71 Identities=24% Similarity=0.388 Sum_probs=57.8
Q ss_pred EEEecCCccccccccccccCcc-cEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCC--CCCeeEecCCcccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENV-TSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWF--QHSMVDVGGQRSER 274 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v-~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~--~~~~il~~~~~~~~ 274 (463)
.+||++|+..-|..|..++.+. .+||||+|.++.. +.+.++...+..++..... .+.|++
T Consensus 51 ~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~---------~~~~~~~~~l~~il~~~~~~~~~~pvl-------- 113 (203)
T cd04105 51 RLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ---------KNLKDVAEFLYDILTDLEKVKNKIPVL-------- 113 (203)
T ss_pred EEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch---------hHHHHHHHHHHHHHHHHhhccCCCCEE--------
Confidence 8999999998999999999998 9999999988542 4566777777776654332 478999
Q ss_pred ccccccccceeeecchhhhch
Q psy16468 275 RKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 275 v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|++..
T Consensus 114 ----------iv~NK~Dl~~a 124 (203)
T cd04105 114 ----------IACNKQDLFTA 124 (203)
T ss_pred ----------EEecchhhccc
Confidence 99999998764
No 81
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.62 E-value=1.2e-07 Score=87.17 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=57.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++..++++++|.|.++. ..++++...+..+++.....+.|++
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~i----------- 110 (180)
T cd04137 52 EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSR----------KSFEVVKVIYDKILDMLGKESVPIV----------- 110 (180)
T ss_pred EEEECCChHhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 8899999988888899999999999999998853 4566777778888876555678999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
++.||+|+..
T Consensus 111 -------lv~NK~Dl~~ 120 (180)
T cd04137 111 -------LVGNKSDLHT 120 (180)
T ss_pred -------EEEEchhhhh
Confidence 9999999863
No 82
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.61 E-value=3.6e-07 Score=82.86 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=50.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+.-|.+++.+++++++|+|+++.. .+++....++.+.... -.+.|++
T Consensus 55 ~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~p~i----------- 112 (165)
T cd01864 55 QIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS----------SFESVPHWIEEVEKYG-ASNVVLL----------- 112 (165)
T ss_pred EEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH----------HHHhHHHHHHHHHHhC-CCCCcEE-----------
Confidence 89999999877888999999999999999988532 2233333444443321 2468899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+...
T Consensus 113 -------vv~nK~Dl~~~ 123 (165)
T cd01864 113 -------LIGNKCDLEEQ 123 (165)
T ss_pred -------EEEECcccccc
Confidence 99999998654
No 83
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.60 E-value=3.2e-07 Score=86.49 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=54.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+++....+..+.....-.+.|++
T Consensus 50 ~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~pii----------- 108 (198)
T cd04147 50 DILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDP----------ESFEEVERLREEILEVKEDKFVPIV----------- 108 (198)
T ss_pred EEEECCCchhhhHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEE-----------
Confidence 8899999988777888899999999999998742 2444555566666655444679999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 109 -------lv~NK~Dl~~ 118 (198)
T cd04147 109 -------VVGNKADSLE 118 (198)
T ss_pred -------EEEEcccccc
Confidence 9999999865
No 84
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.60 E-value=3e-07 Score=86.11 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=48.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..+|.+++++|+|.|+++- ..+++.+..|-..+.. ...+.|++
T Consensus 56 ~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~----------~Sf~~~~~~w~~~i~~-~~~~~pii----------- 113 (182)
T cd04172 56 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------ETLDSVLKKWKGEIQE-FCPNTKML----------- 113 (182)
T ss_pred EEEECCCchhhHhhhhhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-HCCCCCEE-----------
Confidence 8999999988888889999999999999998743 2233332222222221 11368999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
|+.||.|+-.
T Consensus 114 -------lVgNK~DL~~ 123 (182)
T cd04172 114 -------LVGCKSDLRT 123 (182)
T ss_pred -------EEeEChhhhc
Confidence 9999999854
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.60 E-value=4.3e-07 Score=83.31 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=48.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHH-HHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA-LFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~-lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++||...+..|..++.+++++|||.|+++- ..++.... .+..+.. ...+.|++
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~----------~sf~~~~~~~~~~~~~--~~~~~pii---------- 108 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNP----------SSFQNISEKWIPEIRK--HNPKAPII---------- 108 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHh--hCCCCCEE----------
Confidence 8899999988888899999999999999998742 22333322 2223322 12468999
Q ss_pred ccccccceeeecchhhhc
Q psy16468 277 WIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 109 --------lv~nK~Dl~~ 118 (173)
T cd04130 109 --------LVGTQADLRT 118 (173)
T ss_pred --------EEeeChhhcc
Confidence 9999999854
No 86
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.60 E-value=2.9e-07 Score=85.68 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=49.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++++++++|||+|+++-+ .+.+....+..+-... -.+.|++
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~----------s~~~i~~~~~~i~~~~-~~~~~~i----------- 109 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE----------SFENLKFWINEINRYA-RENVIKV----------- 109 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhC-CCCCeEE-----------
Confidence 88999999888888999999999999999987422 2223333333333211 2347888
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+.+.
T Consensus 110 -------vv~nK~Dl~~~ 120 (188)
T cd04125 110 -------IVANKSDLVNN 120 (188)
T ss_pred -------EEEECCCCccc
Confidence 99999998753
No 87
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.59 E-value=2.9e-07 Score=82.65 Aligned_cols=72 Identities=8% Similarity=0.112 Sum_probs=49.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcC-CCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY-PWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~-~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|.+++.+++++|+|+|+++-+. ...+.+-+..+...+.. +...+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~~pii---------- 114 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS-------FEALDSWLKEMKQEGGPHGNMENIVVV---------- 114 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH-------HHhHHHHHHHHHHhccccccCCCceEE----------
Confidence 899999998778889999999999999999885321 11222222223332221 123568999
Q ss_pred ccccccceeeecchhhhc
Q psy16468 277 WIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+.+
T Consensus 115 --------lv~nK~Dl~~ 124 (168)
T cd04119 115 --------VCANKIDLTK 124 (168)
T ss_pred --------EEEEchhccc
Confidence 9999999864
No 88
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.59 E-value=6e-07 Score=81.58 Aligned_cols=71 Identities=8% Similarity=0.017 Sum_probs=49.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++|+|.|+++-. ....+..-...+..+.. ....+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~-------s~~~~~~~~~~i~~~~~-~~~~~~pii----------- 112 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQ-------SLEELKPIYELICEIKG-NNIEKIPIM----------- 112 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHH-------HHHHHHHHHHHHHHHhc-CCCCCCCEE-----------
Confidence 88999999888888888899999999999987421 11122222233333322 123578999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 113 -------lv~nK~Dl~~ 122 (165)
T cd04140 113 -------LVGNKCDESH 122 (165)
T ss_pred -------EEEECccccc
Confidence 9999999855
No 89
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.59 E-value=8.6e-07 Score=85.76 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=53.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..+|.+++++|||.|+++ ...+.+....+..+... .-.+.|++
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~----------~~Sf~~l~~~~~~l~~~-~~~~~piI----------- 104 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN----------VQSLEELEDRFLGLTDT-ANEDCLFA----------- 104 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCcEE-----------
Confidence 899999999888899999999999999999883 22344444555555542 23468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 105 -------lVgNK~DL~~~ 115 (220)
T cd04126 105 -------VVGNKLDLTEE 115 (220)
T ss_pred -------EEEECcccccc
Confidence 99999999763
No 90
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.58 E-value=5.4e-07 Score=81.95 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=48.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++++|.|+++-+. ...+.+-...+...+......+.|++
T Consensus 57 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~pii----------- 118 (170)
T cd04116 57 QIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS-------FQNLSNWKKEFIYYADVKEPESFPFV----------- 118 (170)
T ss_pred EEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH-------HHhHHHHHHHHHHhcccccCCCCcEE-----------
Confidence 889999998888899999999999999999874221 11122222222222222223568999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 119 -------lv~nK~Dl~~ 128 (170)
T cd04116 119 -------VLGNKNDIPE 128 (170)
T ss_pred -------EEEECccccc
Confidence 9999999863
No 91
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.58 E-value=4.7e-07 Score=86.60 Aligned_cols=104 Identities=8% Similarity=0.009 Sum_probs=64.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCC--CCCCCeeEecCCccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP--WFQHSMVDVGGQRSERR 275 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~--~~~~~~il~~~~~~~~v 275 (463)
.+||++||...+..|..++.++++||||+|+++- +.++......+.+.... ...+.|++
T Consensus 53 ~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~----------~s~~~~~~w~~~l~~~~~~~~~~~pii--------- 113 (215)
T cd04109 53 QVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNS----------QSFENLEDWYSMVRKVLKSSETQPLVV--------- 113 (215)
T ss_pred EEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhccccCCCceEE---------
Confidence 8999999988788899999999999999998843 22333333333332211 12456888
Q ss_pred cccccccceeeecchhhhchh-hh-----hhc-cCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 276 KWIHCFENVTFCNSVQLFSQY-NV-----ILN-CMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 276 ~~~~~~~~~l~lNK~D~~~ek-i~-----~~~-~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+..++ +. ... ...+ .+++--.-...+++++.+++.+++
T Consensus 114 ---------lVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 114 ---------LVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred ---------EEEECcccccccccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999997432 11 000 0011 122211122346899999998887
No 92
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.58 E-value=3.3e-07 Score=83.69 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=51.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||.+|+...+..+.++++++++++||+|+++ .+.+......+..+.... -.+.|++
T Consensus 56 ~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pvi----------- 113 (168)
T cd01866 56 QIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQHS-NSNMTIM----------- 113 (168)
T ss_pred EEEECCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEE-----------
Confidence 899999998777788899999999999999883 233444445555554432 2468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 114 -------vv~nK~Dl~~ 123 (168)
T cd01866 114 -------LIGNKCDLES 123 (168)
T ss_pred -------EEEECccccc
Confidence 9999999874
No 93
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.57 E-value=4.9e-07 Score=84.57 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=48.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHH-HHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA-LFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~-lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++||...+..|..++.+++++|+|.|+++-+ .++.... .+..+... ..+.|++
T Consensus 51 ~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~----------sf~~~~~~~~~~i~~~--~~~~pii---------- 108 (189)
T cd04134 51 SLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD----------SLENVESKWLGEIREH--CPGVKLV---------- 108 (189)
T ss_pred EEEECCCChhccccccccccCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHh--CCCCCEE----------
Confidence 89999999888888999999999999999988532 1222211 22333221 2368999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 109 --------lvgNK~Dl~~~ 119 (189)
T cd04134 109 --------LVALKCDLREA 119 (189)
T ss_pred --------EEEEChhhccC
Confidence 99999998764
No 94
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.57 E-value=5.3e-07 Score=80.90 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=49.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+||+......|..++.+++++|+|+|+++. ..+++.......+.... -.+.|++
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~l~~~~~~~-~~~~piv----------- 109 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNR----------ESFENLKNWLKELREYA-DPNVVIM----------- 109 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCeEE-----------
Confidence 8899999977778899999999999999998743 23344444334433222 1478999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 110 -------vv~nK~D~~~ 119 (164)
T smart00175 110 -------LVGNKSDLED 119 (164)
T ss_pred -------EEEEchhccc
Confidence 9999999754
No 95
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.57 E-value=1.9e-07 Score=87.36 Aligned_cols=107 Identities=8% Similarity=0.007 Sum_probs=65.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|.|+++-. ....+.+-+..+..+.. ....+.|++
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~-------s~~~~~~~~~~i~~~~~-~~~~~~pii----------- 110 (190)
T cd04144 50 EVLDTAGQEEYTALRDQWIREGEGFILVYSITSRS-------TFERVERFREQIQRVKD-ESAADVPIM----------- 110 (190)
T ss_pred EEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHH-------HHHHHHHHHHHHHHHhc-ccCCCCCEE-----------
Confidence 88999999888888999999999999999987432 11223333333333221 123568999
Q ss_pred cccccceeeecchhhhchhh-hhh----ccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-VIL----NCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-~~~----~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+..++- ... .+..+ ..+|+--.-...+++++..++.++.
T Consensus 111 -------lvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 111 -------IVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred -------EEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999853211 110 00011 1244433333346778888877766
No 96
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.54 E-value=4.8e-07 Score=81.42 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=48.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.+++++++|+|+++... .......+..+-.. .-.+.|++
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~-~~~~~~ii----------- 109 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS----------FEALPTWLSDARAL-ASPNIVVI----------- 109 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH----------HHHHHHHHHHHHHh-CCCCCeEE-----------
Confidence 899999998778889999999999999999986431 22222333332211 12367899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+.+
T Consensus 110 -------vv~nK~D~~~ 119 (161)
T cd04113 110 -------LVGNKSDLAD 119 (161)
T ss_pred -------EEEEchhcch
Confidence 9999999865
No 97
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.54 E-value=2.2e-06 Score=79.86 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=65.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..+|.++++++||.|+++. ..+++.....+.+-.. -.+.|++
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~--~~~~pii----------- 109 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDS----------SSFERAKFWVKELQNL--EEHCKIY----------- 109 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhc--CCCCCEE-----------
Confidence 7899999988788898999999999999998753 2233333333443332 2368999
Q ss_pred cccccceeeecchhhhchh-----hhhhccCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-----NVILNCMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-----i~~~~~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+.... +.......+ ..+|+--.-...++++..+++.+.+
T Consensus 110 -------lv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 110 -------LCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred -------EEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999985421 100000011 1233322223346889999998888
No 98
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.54 E-value=1.2e-06 Score=79.91 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=48.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+..-+..|..++.+++++++|.|+++- ..+++....+...+... ..+.|++
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~----------~s~~~~~~~~~~~l~~~-~~~~pii----------- 108 (174)
T cd04135 51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP----------ASFQNVKEEWVPELKEY-APNVPYL----------- 108 (174)
T ss_pred EEEeCCCcccccccccccCCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhh-CCCCCEE-----------
Confidence 7899999988888899999999999999998732 12222222222222211 3578999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||+|+..+
T Consensus 109 -------vv~nK~Dl~~~ 119 (174)
T cd04135 109 -------LVGTQIDLRDD 119 (174)
T ss_pred -------EEeEchhhhcC
Confidence 99999998654
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.54 E-value=8e-07 Score=79.13 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=53.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|..++.+++++++|+|+++- ..+.+...++..+.+...-...|++
T Consensus 50 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i----------- 108 (160)
T cd00876 50 DILDTAGQEEFSAMRDLYIRQGDGFILVYSITDR----------ESFEEIKGYREQILRVKDDEDIPIV----------- 108 (160)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEE-----------
Confidence 8899999987777888899999999999998742 2344455555566554433578999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 109 -------vv~nK~D~~~ 118 (160)
T cd00876 109 -------LVGNKCDLEN 118 (160)
T ss_pred -------EEEECCcccc
Confidence 9999999876
No 100
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.53 E-value=2.8e-07 Score=87.48 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=56.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+..++++|+|... ..+..+....+...+....-.+.|++
T Consensus 57 ~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~l~~~~~~~~~ii----------- 115 (219)
T COG1100 57 QLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL----------RESSDELTEEWLEELRELAPDDVPIL----------- 115 (219)
T ss_pred EeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc----------chhhhHHHHHHHHHHHHhCCCCceEE-----------
Confidence 889999999999999999999999999999763 34555555555555443332568999
Q ss_pred cccccceeeecchhhhchhh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN 297 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki 297 (463)
++.||.|++.+..
T Consensus 116 -------lv~nK~Dl~~~~~ 128 (219)
T COG1100 116 -------LVGNKIDLFDEQS 128 (219)
T ss_pred -------EEecccccccchh
Confidence 9999999988754
No 101
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.53 E-value=7.3e-07 Score=85.30 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=68.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++++|.|+++- +.+++....+..+.....-.+.|++
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~Sf~~l~~~~~~i~~~~~~~~~~ii----------- 113 (211)
T cd04111 55 QLWDTAGQERFRSITRSYYRNSVGVLLVFDITNR----------ESFEHVHDWLEEARSHIQPHRPVFI----------- 113 (211)
T ss_pred EEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCeEE-----------
Confidence 8999999988888899999999999999998742 3344445555555543333457788
Q ss_pred cccccceeeecchhhhchhhh-hh--c--cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNV-IL--N--CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~-~~--~--~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+..++.. .. . +..+ ..+++--.....+++++.++|.+..
T Consensus 114 -------lvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 114 -------LVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred -------EEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998653221 10 0 0011 1123222233356889999988766
No 102
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.52 E-value=6.7e-07 Score=83.37 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=50.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHH-HHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK-ALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl-~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++||..-+..|..++.+++++|+|.|+++- ..++... .....+-... .+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~----------~Sf~~~~~~w~~~i~~~~--~~~pii---------- 109 (176)
T cd04133 52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR----------ASYENVLKKWVPELRHYA--PNVPIV---------- 109 (176)
T ss_pred EEEECCCCccccccchhhcCCCcEEEEEEEcCCH----------HHHHHHHHHHHHHHHHhC--CCCCEE----------
Confidence 8999999988888899999999999999998832 2233332 2333332222 368999
Q ss_pred ccccccceeeecchhhhchh
Q psy16468 277 WIHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~ek 296 (463)
|+.||.|+..++
T Consensus 110 --------lvgnK~Dl~~~~ 121 (176)
T cd04133 110 --------LVGTKLDLRDDK 121 (176)
T ss_pred --------EEEeChhhccCh
Confidence 999999996643
No 103
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.51 E-value=1.2e-06 Score=79.84 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=50.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||.. ..++.+++++++|.|++ +...++++...++.+.......+.|++
T Consensus 50 ~i~D~~g~~~-----~~~~~~~~~~ilv~d~~----------~~~sf~~~~~~~~~i~~~~~~~~~pii----------- 103 (158)
T cd04103 50 LIRDEGGAPD-----AQFASWVDAVIFVFSLE----------NEASFQTVYNLYHQLSSYRNISEIPLI----------- 103 (158)
T ss_pred EEEECCCCCc-----hhHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 8899999953 24677899999999988 445677777777777776656778999
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
++.||.|+.
T Consensus 104 -------lvgnK~Dl~ 112 (158)
T cd04103 104 -------LVGTQDAIS 112 (158)
T ss_pred -------EEeeHHHhh
Confidence 999999974
No 104
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.51 E-value=9e-07 Score=82.65 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=47.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++++|+|+++-+ .+++....++.+.... -.+.| +
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~----------s~~~i~~~~~~~~~~~-~~~~p-i----------- 108 (182)
T cd04128 52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS----------TLNSIKEWYRQARGFN-KTAIP-I----------- 108 (182)
T ss_pred EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhC-CCCCE-E-----------
Confidence 89999999888889999999999999999988432 3334444444443321 12455 5
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
++.||.|+.
T Consensus 109 -------lVgnK~Dl~ 117 (182)
T cd04128 109 -------LVGTKYDLF 117 (182)
T ss_pred -------EEEEchhcc
Confidence 679999985
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.50 E-value=1.3e-06 Score=79.14 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=47.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||......+..+++.++++++|+|.++- ..+.++...|-..+... ..+.|++
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~i----------- 108 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSP----------SSFENVKTKWIPEIRHY-CPNVPII----------- 108 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhh-CCCCCEE-----------
Confidence 8899999876556666778999999999998742 12233333333222221 2279999
Q ss_pred cccccceeeecchhhhchh
Q psy16468 278 IHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek 296 (463)
+++||.|+....
T Consensus 109 -------vv~nK~Dl~~~~ 120 (171)
T cd00157 109 -------LVGTKIDLRDDE 120 (171)
T ss_pred -------EEEccHHhhhch
Confidence 999999987653
No 106
>PLN03118 Rab family protein; Provisional
Probab=98.49 E-value=1.7e-06 Score=82.35 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=64.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcC-CCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY-PWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~-~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++||...+..|..++.+++++|+|+|+++- ..+.+....|...+.. ....+.|++
T Consensus 65 ~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~----------~sf~~~~~~~~~~~~~~~~~~~~~~i---------- 124 (211)
T PLN03118 65 TIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR----------ETFTNLSDVWGKEVELYSTNQDCVKM---------- 124 (211)
T ss_pred EEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCCCCEE----------
Confidence 8999999988888999999999999999998742 2233333334443332 223457888
Q ss_pred ccccccceeeecchhhhchhh-hhhc----cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 277 WIHCFENVTFCNSVQLFSQYN-VILN----CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~eki-~~~~----~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+..++- .... +... ..+|+--.-...++++..++|.++.
T Consensus 125 --------lv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 125 --------LVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred --------EEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999854321 1000 0000 1133322222345777777777666
No 107
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.49 E-value=1.6e-06 Score=77.83 Aligned_cols=67 Identities=9% Similarity=0.112 Sum_probs=47.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++++|.|+++-+ .++........+ . ....+.|++
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------s~~~l~~~~~~~-~-~~~~~~p~i----------- 110 (162)
T cd04106 54 MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE----------SFEAIESWKEKV-E-AECGDIPMV----------- 110 (162)
T ss_pred EEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHH-H-HhCCCCCEE-----------
Confidence 89999999888888999999999999999987532 121111112222 1 122468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 111 -------iv~nK~Dl~~ 120 (162)
T cd04106 111 -------LVQTKIDLLD 120 (162)
T ss_pred -------EEEEChhccc
Confidence 9999999865
No 108
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.49 E-value=1.2e-06 Score=83.61 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=31.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++||...+..|..+|.+++++|+|.|+++-
T Consensus 57 ~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~ 90 (202)
T cd04102 57 ELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNR 90 (202)
T ss_pred EEEecCCchhHHHHHHHHhCcCCEEEEEEECcCh
Confidence 8999999988888899999999999999999854
No 109
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.48 E-value=9.7e-07 Score=80.08 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=30.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+...+..|..++.+++++|+|+|+++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTR 84 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence 889999998888899999999999999999874
No 110
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.48 E-value=8.8e-07 Score=81.52 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=50.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||......|..+|.+++++++|.|+++- ..+.........+.....-.+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~ii----------- 110 (170)
T cd04108 52 QLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDV----------ASLEHTRQWLEDALKENDPSSVLLF----------- 110 (170)
T ss_pred EEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCeEE-----------
Confidence 8999999988888999999999999999998742 1122233444444443333457889
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
++.||.|+..
T Consensus 111 -------lVgnK~Dl~~ 120 (170)
T cd04108 111 -------LVGTKKDLSS 120 (170)
T ss_pred -------EEEEChhcCc
Confidence 9999999743
No 111
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.48 E-value=8.8e-07 Score=82.04 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=49.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.++++||||.|+++- +.+++....+-..+.. .-.+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~pii----------- 109 (187)
T cd04132 52 ALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNP----------TSLDNVEDKWFPEVNH-FCPGTPIM----------- 109 (187)
T ss_pred EEEECCCchhHHHHHHHhCCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCCCCEE-----------
Confidence 8999999988788899999999999999998742 2333333322222211 12368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+..+
T Consensus 110 -------lv~nK~Dl~~~ 120 (187)
T cd04132 110 -------LVGLKTDLRKD 120 (187)
T ss_pred -------EEEeChhhhhC
Confidence 99999998664
No 112
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.47 E-value=4.4e-07 Score=77.71 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=45.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCC-CCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP-WFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~-~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+......|...+.+.+++|+|.|+++.. -++++..++..+.+.. .-.+.|++
T Consensus 53 ~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~----------s~~~~~~~~~~l~~~~~~~~~~pii---------- 112 (119)
T PF08477_consen 53 QFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE----------SLEYLSQLLKWLKNIRKRDKNIPII---------- 112 (119)
T ss_dssp EEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH----------HHHHHHHHHHHHHHHHHHSSCSEEE----------
T ss_pred EEEecCccceecccccchhhcCcEEEEEEcCCChH----------HHHHHHHHHHHHHHHHccCCCCCEE----------
Confidence 88999999776777777789999999999998543 2333333322222221 23458999
Q ss_pred ccccccceeeecchh
Q psy16468 277 WIHCFENVTFCNSVQ 291 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D 291 (463)
++.||.|
T Consensus 113 --------lv~nK~D 119 (119)
T PF08477_consen 113 --------LVGNKSD 119 (119)
T ss_dssp --------EEEE-TC
T ss_pred --------EEEeccC
Confidence 9999988
No 113
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.46 E-value=1.2e-06 Score=81.49 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=47.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..+..++.+++++|+|.|+++- ..++..+..|-..+... -.+.|++
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~----------~Sf~~~~~~w~~~i~~~-~~~~~ii----------- 109 (178)
T cd04131 52 SLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRP----------ETLDSVLKKWRGEIQEF-CPNTKVL----------- 109 (178)
T ss_pred EEEECCCchhhhhcchhhcCCCCEEEEEEECCCh----------hhHHHHHHHHHHHHHHH-CCCCCEE-----------
Confidence 8999999987777888899999999999998842 22333222222222111 1368999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
|+.||.|+..
T Consensus 110 -------lVgnK~DL~~ 119 (178)
T cd04131 110 -------LVGCKTDLRT 119 (178)
T ss_pred -------EEEEChhhhc
Confidence 9999999854
No 114
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.46 E-value=1.5e-06 Score=78.47 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=48.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+..-+..|..++++++++|+|.|+++- +..++....+..+... ...+.|++
T Consensus 55 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~pi~----------- 112 (165)
T cd01868 55 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKK----------QTFENVERWLKELRDH-ADSNIVIM----------- 112 (165)
T ss_pred EEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-CCCCCeEE-----------
Confidence 8999999987777888899999999999998832 2233333333333322 12368999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 113 -------vv~nK~Dl~~ 122 (165)
T cd01868 113 -------LVGNKSDLRH 122 (165)
T ss_pred -------EEEECccccc
Confidence 9999999754
No 115
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.46 E-value=3.9e-06 Score=76.46 Aligned_cols=68 Identities=10% Similarity=0.177 Sum_probs=49.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHH-HHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA-LFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~-lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++||...+..|..++.+++++|+|.|+++- ..+++... .+..+... ..+.|++
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~i~~~--~~~~pii---------- 106 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSP----------ASFENVKEKWYPEVKHF--CPNTPII---------- 106 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhh--CCCCCEE----------
Confidence 8999999987788888899999999999998732 22333322 23333322 2478999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 107 --------lv~nK~Dl~~~ 117 (174)
T smart00174 107 --------LVGTKLDLRED 117 (174)
T ss_pred --------EEecChhhhhC
Confidence 99999998764
No 116
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.45 E-value=1.6e-06 Score=78.49 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=30.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+...+..|..++..++++++|+|+++
T Consensus 59 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (169)
T cd04114 59 QIWDTAGQERFRSITQSYYRSANALILTYDITC 91 (169)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 889999998888889999999999999999874
No 117
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.45 E-value=8.8e-07 Score=86.40 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=47.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..+|.+++++|+|.|+++-+ .++.++..|...+... ..+.|++
T Consensus 64 ~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~----------Sf~~~~~~w~~~i~~~-~~~~pii----------- 121 (232)
T cd04174 64 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE----------TVDSALKKWKAEIMDY-CPSTRIL----------- 121 (232)
T ss_pred EEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH----------HHHHHHHHHHHHHHHh-CCCCCEE-----------
Confidence 89999999877788889999999999999998432 2333222222222211 1357899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
|+.||.|+..
T Consensus 122 -------lVgNK~DL~~ 131 (232)
T cd04174 122 -------LIGCKTDLRT 131 (232)
T ss_pred -------EEEECccccc
Confidence 9999999854
No 118
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.41 E-value=2.5e-06 Score=77.81 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=47.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|.|+++-+ .++.....+...+.. ...+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~----------s~~~~~~~~~~~~~~-~~~~~pii----------- 109 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKH-FCPNVPII----------- 109 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHh-hCCCCCEE-----------
Confidence 89999999888888888899999999999987432 121121222222211 12468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 110 -------lv~nK~Dl~~ 119 (175)
T cd01870 110 -------LVGNKKDLRN 119 (175)
T ss_pred -------EEeeChhccc
Confidence 9999999864
No 119
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.40 E-value=3.4e-06 Score=73.63 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=48.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++.++++++|+..+-. + ......+........+ -.+.|++
T Consensus 53 ~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~----~-~~~~~~~~~~~~~~~~----~~~~p~i----------- 112 (161)
T TIGR00231 53 NLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVL----D-VEEILEKQTKEIIHHA----ESNVPII----------- 112 (161)
T ss_pred EEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeeh----h-hhhHhHHHHHHHHHhc----ccCCcEE-----------
Confidence 889999998888899889999999999999875411 0 0111112222222222 1278999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+...
T Consensus 113 -------vv~nK~D~~~~ 123 (161)
T TIGR00231 113 -------LVGNKIDLRDA 123 (161)
T ss_pred -------EEEEcccCCcc
Confidence 99999998664
No 120
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.40 E-value=1e-06 Score=75.79 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=51.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+......|..++.+++++++|+|+++.. .+.+....+........-.+.|++
T Consensus 48 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i----------- 106 (157)
T cd00882 48 QIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRE----------SFENVKEWLLLILINKEGENIPII----------- 106 (157)
T ss_pred EEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhhccCCCcEE-----------
Confidence 89999999988889999999999999999988532 222333322233333445578999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+...
T Consensus 107 -------vv~nk~D~~~~ 117 (157)
T cd00882 107 -------LVGNKIDLPEE 117 (157)
T ss_pred -------EEEeccccccc
Confidence 99999998654
No 121
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.39 E-value=1.8e-06 Score=78.23 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=47.2
Q ss_pred EEEecCCccc-cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCC-CCCCCeeEecCCccccc
Q psy16468 198 TMVDVGGQRS-ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP-WFQHSMVDVGGQRSERR 275 (463)
Q Consensus 198 ~i~DvgGqr~-eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~-~~~~~~il~~~~~~~~v 275 (463)
.+||++|+.. ....|..++.+++++|+|.|+++-. .++........+-... .-.+.|++
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~pii--------- 110 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRS----------SFDEISQLKQLIREIKKRDREIPVI--------- 110 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhcCCCCCCEE---------
Confidence 8999999875 3456778899999999999988432 2233333333333222 13468999
Q ss_pred cccccccceeeecchhhhc
Q psy16468 276 KWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 276 ~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 111 ---------lv~nK~Dl~~ 120 (165)
T cd04146 111 ---------LVGNKADLLH 120 (165)
T ss_pred ---------EEEECCchHH
Confidence 9999999854
No 122
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.37 E-value=3.6e-06 Score=81.12 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=63.5
Q ss_pred EEEecCCcccccccc--ccccC-cccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccc
Q psy16468 198 TMVDVGGQRSERRKW--IHCFE-NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSER 274 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW--~~~f~-~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~ 274 (463)
.+||++|+. .| ..|+. +++++++|.|+++- ..++.+...+..+.......+.|++
T Consensus 53 ~i~Dt~G~~----~~~~~~~~~~~ad~iilV~d~td~----------~S~~~~~~~~~~l~~~~~~~~~pii-------- 110 (221)
T cd04148 53 VVIDHWEQE----MWTEDSCMQYQGDAFVVVYSVTDR----------SSFERASELRIQLRRNRQLEDRPII-------- 110 (221)
T ss_pred EEEeCCCcc----hHHHhHHhhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE--------
Confidence 889999987 23 34556 89999999998842 2234444555555554444679999
Q ss_pred ccccccccceeeecchhhhchh-hhhh--c--cCC-ccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 275 RKWIHCFENVTFCNSVQLFSQY-NVIL--N--CMN-YTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 275 v~~~~~~~~~l~lNK~D~~~ek-i~~~--~--~~~-l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+. +... . +.. -..+++--.....+++++.+++.+..
T Consensus 111 ----------lV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 111 ----------LVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred ----------EEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999985432 1110 0 000 01234433333457899999998888
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.37 E-value=4.1e-06 Score=79.88 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=48.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.+.+++|+|.|+++-. .+.+....+..+... ..+.|++
T Consensus 61 ~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~--~~~~~i~----------- 117 (215)
T PTZ00132 61 NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRI----------TYKNVPNWHRDIVRV--CENIPIV----------- 117 (215)
T ss_pred EEEECCCchhhhhhhHHHhccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHh--CCCCCEE-----------
Confidence 88999999888888999999999999999988432 223333333333321 2467888
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 118 -------lv~nK~Dl~~ 127 (215)
T PTZ00132 118 -------LVGNKVDVKD 127 (215)
T ss_pred -------EEEECccCcc
Confidence 9999999754
No 124
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.36 E-value=3.6e-06 Score=75.68 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=48.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......+..++.+++++|+|.|+++- +.++.....+..+-.... .+.|++
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~----------~S~~~~~~~~~~i~~~~~-~~~~ii----------- 108 (162)
T PF00071_consen 51 EIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE----------ESFENLKKWLEEIQKYKP-EDIPII----------- 108 (162)
T ss_dssp EEEEETTSGGGHHHHHHHHTTESEEEEEEETTBH----------HHHHTHHHHHHHHHHHST-TTSEEE-----------
T ss_pred cccccccccccccccccccccccccccccccccc----------cccccccccccccccccc-ccccce-----------
Confidence 8999999876666677889999999999998743 333333333333332222 568999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
++.||.|+..
T Consensus 109 -------vvg~K~D~~~ 118 (162)
T PF00071_consen 109 -------VVGNKSDLSD 118 (162)
T ss_dssp -------EEEETTTGGG
T ss_pred -------eeeccccccc
Confidence 9999999876
No 125
>PLN03108 Rab family protein; Provisional
Probab=98.34 E-value=3.3e-06 Score=80.56 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=49.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|.|+++-. .++.....+..+.... -.+.|++
T Consensus 58 ~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~----------s~~~l~~~~~~~~~~~-~~~~pii----------- 115 (210)
T PLN03108 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLASWLEDARQHA-NANMTIM----------- 115 (210)
T ss_pred EEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH----------HHHHHHHHHHHHHHhc-CCCCcEE-----------
Confidence 88999999888888999999999999999987432 2322333333333221 2468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+..+
T Consensus 116 -------iv~nK~Dl~~~ 126 (210)
T PLN03108 116 -------LIGNKCDLAHR 126 (210)
T ss_pred -------EEEECccCccc
Confidence 99999998653
No 126
>PRK04213 GTP-binding protein; Provisional
Probab=98.30 E-value=3.6e-06 Score=79.04 Aligned_cols=110 Identities=12% Similarity=0.133 Sum_probs=61.0
Q ss_pred EEEecCC-----------ccccccccccccC----cccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCC
Q psy16468 198 TMVDVGG-----------QRSERRKWIHCFE----NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQH 262 (463)
Q Consensus 198 ~i~DvgG-----------qr~eR~kW~~~f~----~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~ 262 (463)
.+||++| |..-|..|.+++. .+..|++|+|.+.+.+....-...+.+.....+...+.. .+
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 130 (201)
T PRK04213 55 ILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE----LG 130 (201)
T ss_pred EEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----cC
Confidence 7899999 4445666767664 467899999987654321100011122233333333332 26
Q ss_pred CeeEecCCccccccccccccceeeecchhhhchh------hhhhc-cC-Ccc----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 263 SMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQY------NVILN-CM-NYT----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 263 ~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ek------i~~~~-~~-~l~----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
.|++ +++||+|+..+. +.... +. +.. .++|--.-.. +++++.++|.+++
T Consensus 131 ~p~i------------------iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 131 IPPI------------------VAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred CCeE------------------EEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 8999 999999986432 11110 00 100 1233332233 6889999998877
No 127
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.29 E-value=1.3e-05 Score=74.65 Aligned_cols=104 Identities=12% Similarity=-0.002 Sum_probs=60.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||.+|+...+..+...+.++++++++.++++.+ .+++....|-..+.. ...+.|++
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~----------s~~~~~~~~~~~i~~-~~~~~pii----------- 109 (187)
T cd04129 52 ALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD----------SLENVRTKWIEEVRR-YCPNVPVI----------- 109 (187)
T ss_pred EEEECCCChhccccchhhcCCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHH-hCCCCCEE-----------
Confidence 78999998665555556678999999998876432 222222222222221 12468999
Q ss_pred cccccceeeecchhhhchhhhh-------------h--ccCCc--cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVI-------------L--NCMNY--TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~-------------~--~~~~l--~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||.|+..+.... . .+..+ ..||.--.-...+++++.+++.++.
T Consensus 110 -------lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 110 -------LVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred -------EEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 999999985422110 0 00011 1234332333356888888887776
No 128
>PLN03110 Rab GTPase; Provisional
Probab=98.28 E-value=8.4e-06 Score=78.18 Aligned_cols=104 Identities=9% Similarity=0.017 Sum_probs=62.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|.+++.+++++|+|.|+++-. .++.....+..+-.. .-.+.|++
T Consensus 64 ~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~pii----------- 121 (216)
T PLN03110 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ----------TFDNVQRWLRELRDH-ADSNIVIM----------- 121 (216)
T ss_pred EEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH----------HHHHHHHHHHHHHHh-CCCCCeEE-----------
Confidence 89999999888889999999999999999987422 122222222222221 12468999
Q ss_pred cccccceeeecchhhhchhh-hhhccCCcc-----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-VILNCMNYT-----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-~~~~~~~l~-----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+...+- .......+. .+++--.....+++++.+.+....
T Consensus 122 -------iv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 122 -------MAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred -------EEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999743221 000000011 133322233346777877776666
No 129
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.26 E-value=7.5e-06 Score=74.50 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=48.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++.+ .+++....+...+.... .+.|++
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~----------s~~~~~~~~~~~i~~~~-~~~pvi----------- 107 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS----------TLERIRTKWLPLIRRLG-VKVPII----------- 107 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhC-CCCCEE-----------
Confidence 89999999877888888889999999999987432 12221112222222111 268999
Q ss_pred cccccceeeecchhhhchh
Q psy16468 278 IHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek 296 (463)
+++||+|+...+
T Consensus 108 -------iv~nK~Dl~~~~ 119 (166)
T cd01893 108 -------LVGNKSDLRDGS 119 (166)
T ss_pred -------EEEEchhccccc
Confidence 999999986643
No 130
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.23 E-value=1.1e-05 Score=76.42 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=48.7
Q ss_pred EEEecCCccc----ccccc----ccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCC--CCCCCeeEe
Q psy16468 198 TMVDVGGQRS----ERRKW----IHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP--WFQHSMVDV 267 (463)
Q Consensus 198 ~i~DvgGqr~----eR~kW----~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~--~~~~~~il~ 267 (463)
.+||++|+.. .+..| ..++.+++++|||+|+++ ...++....+.+.+.+.. .-.+.|++
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~----------~~S~~~~~~~~~~i~~~~~~~~~~~pii- 120 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS----------PDSFHYVKLLRQQILETRPAGNKEPPIV- 120 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccCCCCCCEE-
Confidence 7899998642 22233 345789999999999874 234555556666666543 24578999
Q ss_pred cCCccccccccccccceeeecchhhhch
Q psy16468 268 GGQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 268 ~~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 121 -----------------ivgNK~Dl~~~ 131 (198)
T cd04142 121 -----------------VVGNKRDQQRH 131 (198)
T ss_pred -----------------EEEECcccccc
Confidence 99999999654
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.20 E-value=1.5e-05 Score=72.85 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=30.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+...+..|.+++.+++++|+|+|.++
T Consensus 70 ~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 102 (179)
T cd01890 70 NLIDTPGHVDFSYEVSRSLAACEGALLLVDATQ 102 (179)
T ss_pred EEEECCCChhhHHHHHHHHHhcCeEEEEEECCC
Confidence 889999998888899999999999999999875
No 132
>PTZ00099 rab6; Provisional
Probab=98.18 E-value=1.4e-05 Score=74.50 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=70.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++|+|+|+++- ..+++....+..+.... -.+.|++
T Consensus 32 ~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~----------~sf~~~~~w~~~i~~~~-~~~~pii----------- 89 (176)
T PTZ00099 32 QLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNR----------QSFENTTKWIQDILNER-GKDVIIA----------- 89 (176)
T ss_pred EEEECCChHHhhhccHHHhCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCeEE-----------
Confidence 8999999998889999999999999999998842 23444555566665432 2468889
Q ss_pred cccccceeeecchhhhchh-hhhhc----cCCcc-ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVILN----CMNYT-IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~~~----~~~l~-~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
|++||.|+...+ +.... +..+. .+|+--.-...+++++.++|.+.+
T Consensus 90 -------lVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 90 -------LVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred -------EEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999986421 11100 00111 233322233357999999999888
No 133
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.13 E-value=2e-05 Score=74.62 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=42.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+.||.. .....+|.+++++|+|.|+++-+ .++.....|...+... ..+.|++
T Consensus 69 ~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~----------Sf~~~~~~w~~~i~~~-~~~~pii----------- 124 (195)
T cd01873 69 RLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPN----------SLRNVKTMWYPEIRHF-CPRVPVI----------- 124 (195)
T ss_pred EEEeCCCChh--hhhcccCCCCCEEEEEEECCChh----------HHHHHHHHHHHHHHHh-CCCCCEE-----------
Confidence 8999988853 12234789999999999987432 2333322222222211 1367999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
++.||.|+..
T Consensus 125 -------lvgNK~DL~~ 134 (195)
T cd01873 125 -------LVGCKLDLRY 134 (195)
T ss_pred -------EEEEchhccc
Confidence 9999999854
No 134
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.12 E-value=1e-05 Score=78.88 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=42.4
Q ss_pred EEEecCCccccc-----cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcC--CCCCCCeeEecCC
Q psy16468 198 TMVDVGGQRSER-----RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY--PWFQHSMVDVGGQ 270 (463)
Q Consensus 198 ~i~DvgGqr~eR-----~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~--~~~~~~~il~~~~ 270 (463)
.+||+|||-..- ....+.|++|.++|||+|...- ...+++..|.+.+.. ..-.+..+-
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~-----------~~~~~l~~~~~~i~~l~~~sp~~~v~---- 115 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSD-----------DYDEDLAYLSDCIEALRQYSPNIKVF---- 115 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-S-----------TCHHHHHHHHHHHHHHHHHSTT-EEE----
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccc-----------cHHHHHHHHHHHHHHHHHhCCCCeEE----
Confidence 999999996443 2356679999999999997621 133444444443322 111256677
Q ss_pred ccccccccccccceeeecchhhhch
Q psy16468 271 RSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 271 ~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+|+.|+|+..+
T Consensus 116 --------------vfiHK~D~l~~ 126 (232)
T PF04670_consen 116 --------------VFIHKMDLLSE 126 (232)
T ss_dssp --------------EEEE-CCCS-H
T ss_pred --------------EEEeecccCCH
Confidence 99999998765
No 135
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.03 E-value=2.2e-05 Score=71.85 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=47.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+...+..|.+++.+++++++|+|.++... ......+..+.. .+.|++
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-----------~~~~~~~~~~~~----~~~~i~----------- 118 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-----------PQTREHLRIARE----GGLPII----------- 118 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-----------HHHHHHHHHHHH----CCCCeE-----------
Confidence 889999998888889999999999999999764321 112222222221 468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 119 -------iv~nK~D~~~ 128 (189)
T cd00881 119 -------VAINKIDRVG 128 (189)
T ss_pred -------EEEECCCCcc
Confidence 9999999875
No 136
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.03 E-value=0.00034 Score=78.91 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=59.1
Q ss_pred eEEEecCCcccc--------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 197 VTMVDVGGQRSE--------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 197 ~~i~DvgGqr~e--------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
+.+||+||+... +..+..+++++++|+||+|.++- ....++ .+.+.+ .. .+.|++
T Consensus 325 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~---------~~~~d~--~i~~~L-r~---~~~pvI-- 387 (712)
T PRK09518 325 FKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG---------LTSTDE--RIVRML-RR---AGKPVV-- 387 (712)
T ss_pred EEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHHH--HHHHHH-Hh---cCCCEE--
Confidence 489999997632 23445567899999999997631 111111 111111 11 468999
Q ss_pred CCccccccccccccceeeecchhhhchhhh--hhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFSQYNV--ILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~eki~--~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+...... ......+...||--.-...++++..++|...+
T Consensus 388 ----------------lV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 388 ----------------LAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred ----------------EEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhc
Confidence 99999998543211 11001233344433333456888888888777
No 137
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.99 E-value=8.4e-05 Score=72.68 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=46.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+......|..++..++++|+|+|.++-. . .....+++.+-. .+.|++
T Consensus 67 ~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~--------~---~~~~~~~~~~~~----~~~P~i----------- 120 (237)
T cd04168 67 NLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV--------Q---AQTRILWRLLRK----LNIPTI----------- 120 (237)
T ss_pred EEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCC--------C---HHHHHHHHHHHH----cCCCEE-----------
Confidence 89999999877778889999999999999987421 1 122233333322 257899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 121 -------ivvNK~D~~~ 130 (237)
T cd04168 121 -------IFVNKIDRAG 130 (237)
T ss_pred -------EEEECccccC
Confidence 9999999754
No 138
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.87 E-value=7e-05 Score=71.32 Aligned_cols=102 Identities=7% Similarity=0.012 Sum_probs=66.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|.++|.+++++|+|.|+++-+ .++......+.+.... .+.|++
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~----------S~~~i~~w~~~i~~~~--~~~pii----------- 103 (200)
T smart00176 47 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARV----------TYKNVPNWHRDLVRVC--ENIPIV----------- 103 (200)
T ss_pred EEEECCCchhhhhhhHHHhcCCCEEEEEEECCChH----------HHHHHHHHHHHHHHhC--CCCCEE-----------
Confidence 89999999888889999999999999999998532 2333333333343321 478999
Q ss_pred cccccceeeecchhhhchhhhhhccCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILNCMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
|+.||+|+....+.... ..+ ..||.--.-...+++++..++.++.
T Consensus 104 -------lvgNK~Dl~~~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 104 -------LCGNKVDVKDRKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -------EEEECcccccccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998543221110 011 1233322222346888888888776
No 139
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.82 E-value=0.00011 Score=65.10 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=26.1
Q ss_pred EEEecCCcccccc--------ccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERR--------KWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~--------kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|....+. .|..+..+++.++||+|...
T Consensus 48 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~ 88 (157)
T cd01894 48 ILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGRE 88 (157)
T ss_pred EEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccc
Confidence 8999999876543 45567788999999999764
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.78 E-value=0.00024 Score=66.92 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.8
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...++++++|.++||||||++.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l 61 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNAL 61 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHH
Confidence 44579999999999999998764
No 141
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.78 E-value=9.6e-05 Score=73.60 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=39.4
Q ss_pred cccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 157 RVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 157 r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
|..|.......|.+++..+ .+||++|+......+..++..++++|+|+|.++
T Consensus 55 rg~si~~~~~~~~~~~~~i----------------------~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~ 106 (267)
T cd04169 55 RGISVTSSVMQFEYRDCVI----------------------NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK 106 (267)
T ss_pred CCCCeEEEEEEEeeCCEEE----------------------EEEECCCchHHHHHHHHHHHHCCEEEEEEECCC
Confidence 4444455556777777777 999999987655556667889999999999874
No 142
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.76 E-value=0.00039 Score=61.35 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQm 33 (463)
++++++|..+|||||++..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l 21 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNAL 21 (157)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999998876
No 143
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.75 E-value=0.00016 Score=67.52 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=47.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+..-.+........++++|+|||..+.- .......+..+.. .+.|++
T Consensus 73 ~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~-----------~~~~~~~l~~~~~----~~~p~i----------- 126 (188)
T PF00009_consen 73 TLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGI-----------QPQTEEHLKILRE----LGIPII----------- 126 (188)
T ss_dssp EEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBS-----------THHHHHHHHHHHH----TT-SEE-----------
T ss_pred eecccccccceeecccceecccccceeeeeccccc-----------ccccccccccccc----cccceE-----------
Confidence 89999999777777777788899999999977431 1223333333332 247788
Q ss_pred cccccceeeecchhhhchhhh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNV 298 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~ 298 (463)
+++||+|.....+.
T Consensus 127 -------vvlNK~D~~~~~~~ 140 (188)
T PF00009_consen 127 -------VVLNKMDLIEKELE 140 (188)
T ss_dssp -------EEEETCTSSHHHHH
T ss_pred -------EeeeeccchhhhHH
Confidence 99999999854443
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.66 E-value=0.00024 Score=72.92 Aligned_cols=73 Identities=14% Similarity=0.282 Sum_probs=46.4
Q ss_pred EEEecCCcc-------ccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhc-CCCCCCCeeEecC
Q psy16468 198 TMVDVGGQR-------SERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIIT-YPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr-------~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~-~~~~~~~~il~~~ 269 (463)
.++|++|+. ..+..|....+.++.++||+|+++.+. .+-+++-..+.+++.. .+.+.+.|++
T Consensus 208 ~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l~~EL~~~~~~l~~kp~I--- 277 (329)
T TIGR02729 208 VIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEIIRNELKKYSPELAEKPRI--- 277 (329)
T ss_pred EEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHHHHHHHHhhhhhccCCEE---
Confidence 889999973 234567777788999999999886421 1111111122222221 2345678999
Q ss_pred Cccccccccccccceeeecchhhhch
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 278 ---------------IV~NK~DL~~~ 288 (329)
T TIGR02729 278 ---------------VVLNKIDLLDE 288 (329)
T ss_pred ---------------EEEeCccCCCh
Confidence 99999998653
No 145
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.64 E-value=0.00019 Score=68.10 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.|.....+++.+++|+|.++
T Consensus 86 ~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~ 118 (203)
T cd01888 86 SFVDCPGHEILMATMLSGAAVMDGALLLIAANE 118 (203)
T ss_pred EEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence 889999998777888888889999999999874
No 146
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.64 E-value=0.00021 Score=66.60 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=49.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++++.||..-+..|.-.++++.+.|++||.+.= ..+ +|..+.+-+-.... .|++
T Consensus 71 ~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~---------~~~--~a~~ii~f~~~~~~---ip~v----------- 125 (187)
T COG2229 71 HLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP---------ITF--HAEEIIDFLTSRNP---IPVV----------- 125 (187)
T ss_pred EEecCCCcHHHHHHHHHHhCCcceEEEEEecCCC---------cch--HHHHHHHHHhhccC---CCEE-----------
Confidence 8999999999999999999999999999997631 111 33333333322111 8999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|++..
T Consensus 126 -------Va~NK~DL~~a 136 (187)
T COG2229 126 -------VAINKQDLFDA 136 (187)
T ss_pred -------EEeeccccCCC
Confidence 99999999875
No 147
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.62 E-value=0.00032 Score=69.52 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=45.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+......|..++..++.+++|+|.++..+. ....+++.+.. .+.|++
T Consensus 67 ~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~-----------~~~~~~~~~~~----~~~p~i----------- 120 (268)
T cd04170 67 NLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEV-----------GTEKLWEFADE----AGIPRI----------- 120 (268)
T ss_pred EEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCH-----------HHHHHHHHHHH----cCCCEE-----------
Confidence 8999999876566788889999999999998754221 12233333222 257889
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|...
T Consensus 121 -------ivvNK~D~~~ 130 (268)
T cd04170 121 -------IFINKMDRER 130 (268)
T ss_pred -------EEEECCccCC
Confidence 9999999754
No 148
>PRK15494 era GTPase Era; Provisional
Probab=97.62 E-value=0.00051 Score=70.74 Aligned_cols=99 Identities=10% Similarity=0.176 Sum_probs=55.7
Q ss_pred EEEecCCcccc---------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQRSE---------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr~e---------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.+||++|+... |..|. .+.++++|+||+|.++. ..... ..+++.+-. .+.|.+
T Consensus 103 ~~~DTpG~~~~~~~l~~~~~r~~~~-~l~~aDvil~VvD~~~s---------~~~~~--~~il~~l~~----~~~p~I-- 164 (339)
T PRK15494 103 ILYDTPGIFEPKGSLEKAMVRCAWS-SLHSADLVLLIIDSLKS---------FDDIT--HNILDKLRS----LNIVPI-- 164 (339)
T ss_pred EEEECCCcCCCcccHHHHHHHHHHH-HhhhCCEEEEEEECCCC---------CCHHH--HHHHHHHHh----cCCCEE--
Confidence 88999998321 11232 36799999999996531 01111 122222221 135677
Q ss_pred CCccccccccccccceeeecchhhhchhhhhh----c-cCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFSQYNVIL----N-CMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~----~-~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+.+... . ..+...+||--.-...++++..++|....
T Consensus 165 ----------------lViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 165 ----------------FLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred ----------------EEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 8899999854322111 0 01223456654444457888888887765
No 149
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.57 E-value=0.00023 Score=71.03 Aligned_cols=83 Identities=8% Similarity=0.031 Sum_probs=58.1
Q ss_pred cccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhc
Q psy16468 157 RVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILF 236 (463)
Q Consensus 157 r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~ 236 (463)
|.-|.-.....|.+++..+ .++|++|.......|..+...++++|||||.++.-+
T Consensus 48 rgiti~~~~~~~~~~~~~i----------------------~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~--- 102 (270)
T cd01886 48 RGITIQSAATTCFWKDHRI----------------------NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVE--- 102 (270)
T ss_pred CCcCeeccEEEEEECCEEE----------------------EEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCC---
Confidence 3334444456677777766 899999998777889999999999999999875421
Q ss_pred cCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhc
Q psy16468 237 ESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 237 e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
.....+++.+.. .+.|++ +++||+|+..
T Consensus 103 --------~~t~~~~~~~~~----~~~p~i------------------vviNK~D~~~ 130 (270)
T cd01886 103 --------PQTETVWRQADR----YNVPRI------------------AFVNKMDRTG 130 (270)
T ss_pred --------HHHHHHHHHHHH----cCCCEE------------------EEEECCCCCC
Confidence 112233333322 357899 9999999764
No 150
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.53 E-value=0.00093 Score=70.71 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=35.1
Q ss_pred cccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 157 RVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 157 r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
|.-|..+....|..++..+ .++|++|++...+.-.....+++++++|+|.++
T Consensus 68 rG~T~d~~~~~~~~~~~~i----------------------~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 68 RGVTIDLAHKKFETDKYYF----------------------TIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred cCccceeeeEEEecCCeEE----------------------EEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 3445555556666666666 999999975433322344567999999999874
No 151
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.52 E-value=0.00099 Score=63.47 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=27.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|+..-.+.+......++.+|+|+|.++
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC
Confidence 899999986555567778889999999999874
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.52 E-value=0.0006 Score=72.68 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
+..+||+++|.+++||||++.++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L 223 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNAL 223 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHH
Confidence 45689999999999999998885
No 153
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.47 E-value=0.00053 Score=64.13 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=22.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.-......++++++|+|.++
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATK 103 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 889999985432222222345789999999875
No 154
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.46 E-value=0.00054 Score=74.61 Aligned_cols=63 Identities=11% Similarity=0.227 Sum_probs=42.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+..-......++..++++|+|+|.++--+ .....+++ ++. ..+.|++
T Consensus 83 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-----------~~t~~l~~-~~~---~~~~Pii----------- 136 (527)
T TIGR00503 83 NLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-----------TRTRKLME-VTR---LRDTPIF----------- 136 (527)
T ss_pred EEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-----------HHHHHHHH-HHH---hcCCCEE-----------
Confidence 899999986444433446788999999999774210 01122332 332 2468999
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||+|+.
T Consensus 137 -------vviNKiD~~ 145 (527)
T TIGR00503 137 -------TFMNKLDRD 145 (527)
T ss_pred -------EEEECcccc
Confidence 999999974
No 155
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.45 E-value=0.0014 Score=58.68 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.3
Q ss_pred ceeEEEECCCCCChhHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQm 33 (463)
+++|+++|.+++||||++.++
T Consensus 2 ~~~i~i~G~~~~GKstli~~l 22 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNAL 22 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 579999999999999998885
No 156
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.45 E-value=0.00037 Score=60.61 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=26.5
Q ss_pred EEEecCCcccccc-------ccccccCcccEEEEEEeccchh
Q psy16468 198 TMVDVGGQRSERR-------KWIHCFENVTSIIFLVALSEYD 232 (463)
Q Consensus 198 ~i~DvgGqr~eR~-------kW~~~f~~v~~iiFvv~ls~yd 232 (463)
.++|.+|+..... .|..++.+++.++||++.+...
T Consensus 48 ~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~ 89 (163)
T cd00880 48 VLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRA 89 (163)
T ss_pred EEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCC
Confidence 8899999755432 4445778899999999988643
No 157
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.42 E-value=0.00089 Score=70.83 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=55.9
Q ss_pred EEEecCCccc--------cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRS--------ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~--------eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||+||+.. .+..+..++.++++|+||+|.++-. ....+ .+ ..++.. .+.|++
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~---------~~~~~--~~-~~~l~~---~~~pii--- 113 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL---------TPADE--EI-AKILRK---SNKPVI--- 113 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC---------CHHHH--HH-HHHHHH---cCCcEE---
Confidence 8999999865 2344566788999999999976421 11111 11 111111 168999
Q ss_pred Cccccccccccccceeeecchhhhchh--hhhhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQY--NVILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~ek--i~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|..... +.....-.+..++|--.-...++++..+.|....
T Consensus 114 ---------------lv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 114 ---------------LVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred ---------------EEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 999999964311 1111000122233322223346778888887644
No 158
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.39 E-value=0.0014 Score=69.50 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=26.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++|++...+.......+++++|+|+|.++-
T Consensus 88 ~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 88 TIVDCPGHRDFIKNMITGASQADAAVLVVAVGDG 121 (426)
T ss_pred EEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence 9999999875544455566789999999998853
No 159
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.33 E-value=0.00085 Score=73.04 Aligned_cols=83 Identities=12% Similarity=0.162 Sum_probs=55.8
Q ss_pred cccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhc
Q psy16468 157 RVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILF 236 (463)
Q Consensus 157 r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~ 236 (463)
|.-|.......|.+++..+ .++|++|+.........++..++++|+|+|.++--+
T Consensus 63 rgiSi~~~~~~~~~~~~~i----------------------nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~--- 117 (526)
T PRK00741 63 RGISVTSSVMQFPYRDCLI----------------------NLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE--- 117 (526)
T ss_pred hCCceeeeeEEEEECCEEE----------------------EEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC---
Confidence 3344444455677777777 999999986665556667889999999999874210
Q ss_pred cCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhc
Q psy16468 237 ESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 237 e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
.....+++..- ..+.|++ +++||+|+..
T Consensus 118 --------~~t~~l~~~~~----~~~iPii------------------v~iNK~D~~~ 145 (526)
T PRK00741 118 --------PQTRKLMEVCR----LRDTPIF------------------TFINKLDRDG 145 (526)
T ss_pred --------HHHHHHHHHHH----hcCCCEE------------------EEEECCcccc
Confidence 11223333221 2468999 9999999754
No 160
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.33 E-value=0.0018 Score=68.18 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=42.5
Q ss_pred EEEecCCcccccccc-----------ccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeE
Q psy16468 198 TMVDVGGQRSERRKW-----------IHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVD 266 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW-----------~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il 266 (463)
.++|++|++..++.+ ..++..++++|+|+|.++-. . .....+...+.. .+.|++
T Consensus 223 ~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~---------~--~~~~~~~~~~~~----~~~~ii 287 (429)
T TIGR03594 223 LLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGI---------T--EQDLRIAGLILE----AGKALV 287 (429)
T ss_pred EEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCc---------c--HHHHHHHHHHHH----cCCcEE
Confidence 899999987655443 24567899999999977321 0 112233343333 257999
Q ss_pred ecCCccccccccccccceeeecchhhh
Q psy16468 267 VGGQRSERRKWIHCFENVTFCNSVQLF 293 (463)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~l~lNK~D~~ 293 (463)
+++||+|+.
T Consensus 288 ------------------iv~NK~Dl~ 296 (429)
T TIGR03594 288 ------------------IVVNKWDLV 296 (429)
T ss_pred ------------------EEEECcccC
Confidence 999999987
No 161
>KOG0084|consensus
Probab=97.32 E-value=0.00083 Score=63.36 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=50.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.|||..||..-|..-.+||.++++||||-|++. +-.+ | ++..|-.=+..-.-.+.+.+
T Consensus 61 QIWDTAGQERFrtit~syYR~ahGii~vyDiT~--~~SF-----~----~v~~Wi~Ei~~~~~~~v~~l----------- 118 (205)
T KOG0084|consen 61 QIWDTAGQERFRTITSSYYRGAHGIIFVYDITK--QESF-----N----NVKRWIQEIDRYASENVPKL----------- 118 (205)
T ss_pred EeeeccccHHHhhhhHhhccCCCeEEEEEEccc--HHHh-----h----hHHHHHHHhhhhccCCCCeE-----------
Confidence 999999998888889999999999999999884 2111 1 11112222222233457888
Q ss_pred cccccceeeecchhhhchhh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN 297 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki 297 (463)
|+.||.|+.+.+.
T Consensus 119 -------LVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 119 -------LVGNKCDLTEKRV 131 (205)
T ss_pred -------EEeeccccHhhee
Confidence 9999999987665
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.32 E-value=0.0022 Score=70.85 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=63.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++..++++|+|+|.++-.+. ++...+..... .+.|++
T Consensus 73 ~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~-----------qt~~~~~~~~~----~~ipiI----------- 126 (595)
T TIGR01393 73 NLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEA-----------QTLANVYLALE----NDLEII----------- 126 (595)
T ss_pred EEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCH-----------hHHHHHHHHHH----cCCCEE-----------
Confidence 8999999988888899999999999999998753211 12222333332 257889
Q ss_pred cccccceeeecchhhhch-------hhhhhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQ-------YNVILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e-------ki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+... .+......+...+++--.-...++++..++|.+.+
T Consensus 127 -------iViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 127 -------PVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred -------EEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 99999998532 11111000111233322222346888999998877
No 163
>PRK13351 elongation factor G; Reviewed
Probab=97.23 E-value=0.0015 Score=73.31 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=61.0
Q ss_pred cccccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhh
Q psy16468 155 RVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQI 234 (463)
Q Consensus 155 ~~r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~ 234 (463)
+.|..|.+.....+.+++..+ .+||++|+..-...|.+++..++++|+|+|.++-.+.
T Consensus 55 ~~r~~ti~~~~~~~~~~~~~i----------------------~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~ 112 (687)
T PRK13351 55 QERGITIESAATSCDWDNHRI----------------------NLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQP 112 (687)
T ss_pred HhcCCCcccceEEEEECCEEE----------------------EEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCH
Confidence 345556666556677777766 9999999977677888999999999999998753211
Q ss_pred hccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhch
Q psy16468 235 LFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 235 ~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
.....++.+-. .+.|++ +++||+|+...
T Consensus 113 -----------~~~~~~~~~~~----~~~p~i------------------iviNK~D~~~~ 140 (687)
T PRK13351 113 -----------QTETVWRQADR----YGIPRL------------------IFINKMDRVGA 140 (687)
T ss_pred -----------HHHHHHHHHHh----cCCCEE------------------EEEECCCCCCC
Confidence 12333333322 257899 99999998754
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.21 E-value=0.0022 Score=68.52 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=55.2
Q ss_pred EEEecCCccccc---------cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQRSER---------RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr~eR---------~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.+||+.|++... +-| .++.+++.+++|+|.++... . +....+.. ..+.|++
T Consensus 266 ~l~DT~G~~~~~~~ie~~gi~~~~-~~~~~aD~il~VvD~s~~~s--~---------~~~~~l~~------~~~~pii-- 325 (449)
T PRK05291 266 RLIDTAGIRETDDEVEKIGIERSR-EAIEEADLVLLVLDASEPLT--E---------EDDEILEE------LKDKPVI-- 325 (449)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHH-HHHHhCCEEEEEecCCCCCC--h---------hHHHHHHh------cCCCCcE--
Confidence 889999986321 122 35778999999999875321 1 11223322 3468999
Q ss_pred CCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+.-.... .-..+++--.-...++++..++|.+.+
T Consensus 326 ----------------iV~NK~DL~~~~~~~~~--~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 326 ----------------VVLNKADLTGEIDLEEE--NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------------EEEEhhhccccchhhhc--cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 99999998653221100 001122211112246888888887776
No 165
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.20 E-value=0.002 Score=61.42 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=29.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.++|++|+..-...+..++..++++++|+|.++.
T Consensus 74 ~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~ 107 (213)
T cd04167 74 NIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG 107 (213)
T ss_pred EEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC
Confidence 8899999987777788889999999999998753
No 166
>PRK10218 GTP-binding protein; Provisional
Probab=97.19 E-value=0.0023 Score=70.80 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=47.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+.-|..++..++++|+|+|.++-- +......+..+.. .+.|++
T Consensus 71 nliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-----------~~qt~~~l~~a~~----~gip~I----------- 124 (607)
T PRK10218 71 NIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-----------MPQTRFVTKKAFA----YGLKPI----------- 124 (607)
T ss_pred EEEECCCcchhHHHHHHHHHhCCEEEEEEecccCc-----------cHHHHHHHHHHHH----cCCCEE-----------
Confidence 99999999888888999999999999999987431 1122222333322 357889
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|...
T Consensus 125 -------VviNKiD~~~ 134 (607)
T PRK10218 125 -------VVINKVDRPG 134 (607)
T ss_pred -------EEEECcCCCC
Confidence 9999999754
No 167
>PRK00089 era GTPase Era; Reviewed
Probab=97.14 E-value=0.0036 Score=62.61 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=57.8
Q ss_pred EEEecCCcccccc--------ccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERR--------KWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~--------kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.++|++|....+. .+..++.+++.|+||+|.++.- .... ..+.+.+-. .+.|++
T Consensus 56 ~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~--------~~~~---~~i~~~l~~----~~~pvi--- 117 (292)
T PRK00089 56 IFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI--------GPGD---EFILEKLKK----VKTPVI--- 117 (292)
T ss_pred EEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--------ChhH---HHHHHHHhh----cCCCEE---
Confidence 8899999744332 2334678899999999987510 1111 112222221 257899
Q ss_pred Cccccccccccccceeeecchhhhch--hhhh----hc-cCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQ--YNVI----LN-CMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~e--ki~~----~~-~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+... .+.. .. ..++..+||--.....++++..+++....
T Consensus 118 ---------------lVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 118 ---------------LVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred ---------------EEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 99999999732 2211 10 01334455544444456788888887765
No 168
>KOG0090|consensus
Probab=97.11 E-value=0.0011 Score=63.31 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=55.6
Q ss_pred EEEecCCccccccccccccC---cccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHh-cCC-CCCCCeeEecCCcc
Q psy16468 198 TMVDVGGQRSERRKWIHCFE---NVTSIIFLVALSEYDQILFESENENRMEESKALFKTII-TYP-WFQHSMVDVGGQRS 272 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~---~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~-~~~-~~~~~~il~~~~~~ 272 (463)
+++|++|...-|+|-..+|. .+.+||||||...++.- +.+.-+.+..++ ++. .-..+|++
T Consensus 85 ~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~---------vrdvaefLydil~~~~~~~~~~~vL------ 149 (238)
T KOG0090|consen 85 TLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKN---------VRDVAEFLYDILLDSRVKKNKPPVL------ 149 (238)
T ss_pred EEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchh---------hHHHHHHHHHHHHhhccccCCCCEE------
Confidence 89999999999999999998 79999999999988643 334444444444 443 35578999
Q ss_pred ccccccccccceeeecchhhhchh
Q psy16468 273 ERRKWIHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 273 ~~v~~~~~~~~~l~lNK~D~~~ek 296 (463)
+..||+|++-.|
T Consensus 150 ------------IaCNKqDl~tAk 161 (238)
T KOG0090|consen 150 ------------IACNKQDLFTAK 161 (238)
T ss_pred ------------EEecchhhhhcC
Confidence 999999997653
No 169
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.11 E-value=0.0025 Score=70.33 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=30.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.+...+.+++.+++|+|.++
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~ 85 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADE 85 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence 899999998888888889999999999999875
No 170
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.11 E-value=0.0018 Score=72.87 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=47.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|.+++..++++|+|+|.++..+ ..+...+..+. -.+.|++
T Consensus 298 tfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~-----------~QT~E~I~~~k----~~~iPiI----------- 351 (742)
T CHL00189 298 VFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK-----------PQTIEAINYIQ----AANVPII----------- 351 (742)
T ss_pred EEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC-----------hhhHHHHHHHH----hcCceEE-----------
Confidence 889999998888889999999999999999764321 12222222222 1358999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 352 -------VViNKiDl~~ 361 (742)
T CHL00189 352 -------VAINKIDKAN 361 (742)
T ss_pred -------EEEECCCccc
Confidence 9999999865
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.09 E-value=0.004 Score=68.74 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=45.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|......++.+|+|+|.++-. +..++..+...- ..+.|++
T Consensus 138 ~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv-----------~~qT~e~i~~~~----~~~vPiI----------- 191 (587)
T TIGR00487 138 TFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGV-----------MPQTIEAISHAK----AANVPII----------- 191 (587)
T ss_pred EEEECCCCcchhhHHHhhhccCCEEEEEEECCCCC-----------CHhHHHHHHHHH----HcCCCEE-----------
Confidence 88999999888888888889999999999976421 222222222221 2368999
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||+|+.
T Consensus 192 -------VviNKiDl~ 200 (587)
T TIGR00487 192 -------VAINKIDKP 200 (587)
T ss_pred -------EEEECcccc
Confidence 999999985
No 172
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.09 E-value=0.00035 Score=65.65 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=51.2
Q ss_pred EEEecCCccccccccccc---cCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCC--CCCCeeEecCCcc
Q psy16468 198 TMVDVGGQRSERRKWIHC---FENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPW--FQHSMVDVGGQRS 272 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~---f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~--~~~~~il~~~~~~ 272 (463)
.++|++|....|.+.... -.++.+||||||.+.+. ..+.++.+.+..|+..+. -...|++
T Consensus 52 ~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~---------~~~~~~Ae~Ly~iL~~~~~~~~~~piL------ 116 (181)
T PF09439_consen 52 RLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ---------KELRDVAEYLYDILSDTEVQKNKPPIL------ 116 (181)
T ss_dssp CEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHHHHHCCTT--EEE------
T ss_pred EEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch---------hhHHHHHHHHHHHHHhhhhccCCCCEE------
Confidence 899999998888766554 67899999999987532 236667777777776654 3478999
Q ss_pred ccccccccccceeeecchhhhch
Q psy16468 273 ERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 273 ~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|++..
T Consensus 117 ------------IacNK~Dl~~A 127 (181)
T PF09439_consen 117 ------------IACNKQDLFTA 127 (181)
T ss_dssp ------------EEEE-TTSTT-
T ss_pred ------------EEEeCcccccc
Confidence 99999999874
No 173
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.02 E-value=0.0026 Score=70.35 Aligned_cols=100 Identities=9% Similarity=0.003 Sum_probs=63.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|.+++..++++|+|+|.++-.+ .++...+..... .+.|++
T Consensus 77 nLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-----------~qt~~~~~~~~~----~~lpiI----------- 130 (600)
T PRK05433 77 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-----------AQTLANVYLALE----NDLEII----------- 130 (600)
T ss_pred EEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----CCCCEE-----------
Confidence 899999999888889999999999999999875321 112222332322 257889
Q ss_pred cccccceeeecchhhhchhhh-------hhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNV-------ILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~-------~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+...... .....+-..++|--.-...++++..++|...+
T Consensus 131 -------vViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 131 -------PVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred -------EEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 99999998542211 11000001133322222346888888988877
No 174
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.00 E-value=0.0015 Score=58.28 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=28.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++||...+..+..++.++++++||+|.++
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~ 86 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE 86 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCC
Confidence 899999997766667778889999999999864
No 175
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.98 E-value=0.0054 Score=69.30 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.9
Q ss_pred cceeEEEECCCCCChhHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQm 33 (463)
..+||+++|.+++||||++.++
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l 470 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQL 470 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4589999999999999998886
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.97 E-value=0.005 Score=69.97 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=46.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|......++.+|+|+|..+- .+.++...+..+- ..+.|++
T Consensus 340 tfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG-----------v~~qT~e~i~~a~----~~~vPiI----------- 393 (787)
T PRK05306 340 TFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG-----------VMPQTIEAINHAK----AAGVPII----------- 393 (787)
T ss_pred EEEECCCCccchhHHHhhhhhCCEEEEEEECCCC-----------CCHhHHHHHHHHH----hcCCcEE-----------
Confidence 8899999988888888888889999999997642 1222232232221 2358999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 394 -------VviNKiDl~~ 403 (787)
T PRK05306 394 -------VAINKIDKPG 403 (787)
T ss_pred -------EEEECccccc
Confidence 9999999854
No 177
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.93 E-value=0.011 Score=63.59 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.3
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...+||+++|.+++||||++..+
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l 231 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKL 231 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999998875
No 178
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.92 E-value=0.0066 Score=64.22 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...++|.++|.+++||||++.++
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~l 193 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINAL 193 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999998774
No 179
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.85 E-value=0.0023 Score=67.43 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=30.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|+....+.|...-..++++++|+|.++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANE 115 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 899999999888889888888999999999874
No 180
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.84 E-value=0.0019 Score=63.29 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=36.5
Q ss_pred EEEecCCcccccccc------ccccC--cccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERRKW------IHCFE--NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW------~~~f~--~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.++|++||-.--.-| .+.+. .-..++|++|..-... ..+-+...+..+..+++ .+.|.+
T Consensus 94 ~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~------~~~f~s~~L~s~s~~~~----~~lP~v--- 160 (238)
T PF03029_consen 94 LLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD------PSKFVSSLLLSLSIMLR----LELPHV--- 160 (238)
T ss_dssp EEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS------HHHHHHHHHHHHHHHHH----HTSEEE---
T ss_pred EEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC------hhhHHHHHHHHHHHHhh----CCCCEE---
Confidence 889999994433222 33333 3458999999663321 22333444444444443 258999
Q ss_pred Cccccccccccccceeeecchhhhchh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~ek 296 (463)
.++||+|+.++.
T Consensus 161 ---------------nvlsK~Dl~~~~ 172 (238)
T PF03029_consen 161 ---------------NVLSKIDLLSKY 172 (238)
T ss_dssp ---------------EEE--GGGS-HH
T ss_pred ---------------EeeeccCcccch
Confidence 999999998855
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.81 E-value=0.012 Score=62.08 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred EEEecCCcc--------ccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQR--------SERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr--------~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||+||.. .-+..+..+.++++.|+||+|..+-- .. +...+.+ ++.. .+.|++
T Consensus 50 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~---------~~--~d~~i~~-~l~~---~~~pii--- 111 (429)
T TIGR03594 50 ILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGL---------TP--EDEEIAK-WLRK---SGKPVI--- 111 (429)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC---------CH--HHHHHHH-HHHH---hCCCEE---
Confidence 899999963 22344566778899999999976310 11 1111111 2211 257899
Q ss_pred Cccccccccccccceeeecchhhhchhhhhh--ccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYNVIL--NCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~--~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
++.||+|...+..... ....+..+||--.-....+++..+.+...+
T Consensus 112 ---------------lVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 112 ---------------LVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred ---------------EEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 9999999865432111 001233445544444456788888888777
No 182
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.78 E-value=0.0025 Score=57.19 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=30.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.++|++|+...+..|.+++..++++++|+|.++.
T Consensus 53 ~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~ 86 (168)
T cd01887 53 TFIDTPGHEAFTNMRARGASLTDIAILVVAADDG 86 (168)
T ss_pred EEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCC
Confidence 8999999987778888899999999999999864
No 183
>KOG0094|consensus
Probab=96.77 E-value=0.0062 Score=57.61 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=60.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||..||..-|..-..|++|..++|-|-|++ +.|.++...+..+.+.+.+--.++-++
T Consensus 74 QlWDTAGQERFrslipsY~Rds~vaviVyDit----------~~~Sfe~t~kWi~dv~~e~gs~~viI~----------- 132 (221)
T KOG0094|consen 74 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDIT----------DRNSFENTSKWIEDVRRERGSDDVIIF----------- 132 (221)
T ss_pred EEEecccHHHHhhhhhhhccCCeEEEEEEecc----------ccchHHHHHHHHHHHHhccCCCceEEE-----------
Confidence 89999999988988899999999999998987 578888888888999887766566667
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
|+.||.||..+
T Consensus 133 -------LVGnKtDL~dk 143 (221)
T KOG0094|consen 133 -------LVGNKTDLSDK 143 (221)
T ss_pred -------EEcccccccch
Confidence 99999999775
No 184
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.75 E-value=0.01 Score=56.22 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|.....+--......++++++|||.++
T Consensus 68 ~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~ 100 (195)
T cd01884 68 AHVDCPGHADYIKNMITGAAQMDGAILVVSATD 100 (195)
T ss_pred EEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC
Confidence 889999986443333445567999999999763
No 185
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.72 E-value=0.0013 Score=63.32 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=41.0
Q ss_pred cccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 157 RVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 157 r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
|.-|.-+....|..++..+ .++|++|++.....|......++++|||||.++
T Consensus 61 rg~T~d~~~~~~~~~~~~i----------------------~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 61 RGVTIDVGLAKFETEKYRF----------------------TILDAPGHRDFVPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred CccCeecceEEEeeCCeEE----------------------EEEECCChHHHHHHHHHHhhhCCEEEEEEECCC
Confidence 3344444556677777777 999999998877888888889999999999875
No 186
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.68 E-value=0.01 Score=53.46 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
+|+++|.+++||||+++++
T Consensus 2 ~i~~~G~~~~GKssli~~l 20 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKL 20 (168)
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 7899999999999999885
No 187
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.63 E-value=0.024 Score=56.75 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.7
Q ss_pred cceeEEEECCCCCChhHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQm 33 (463)
-.++|+++|.+|+||||++..+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L 24 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTL 24 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHH
Confidence 3679999999999999998875
No 188
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.62 E-value=0.015 Score=65.39 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=46.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+......|...+..+++++||+|.++-.+ .+...++..+-. .+.|++
T Consensus 78 ~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~-----------~~~~~~~~~~~~----~~~p~i----------- 131 (689)
T TIGR00484 78 NIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQ-----------PQSETVWRQANR----YEVPRI----------- 131 (689)
T ss_pred EEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCC-----------hhHHHHHHHHHH----cCCCEE-----------
Confidence 999999997666678889999999999999774211 112233333322 257889
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 132 -------vviNK~D~~~ 141 (689)
T TIGR00484 132 -------AFVNKMDKTG 141 (689)
T ss_pred -------EEEECCCCCC
Confidence 9999999864
No 189
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.51 E-value=0.031 Score=60.23 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=24.5
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhcCCC
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIHGSG 40 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~~~g 40 (463)
.....+++.++|..+|||||++-++ ++..|
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~L--L~~~g 52 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRL--LHDTK 52 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHH--HHhcC
Confidence 4467799999999999999999885 45544
No 190
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.50 E-value=0.0051 Score=57.54 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=47.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+..-+..|..++.+++++++|+|.++-. ......++..+.. .+.|++
T Consensus 68 ~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-----------~~~~~~~~~~~~~----~~~p~i----------- 121 (194)
T cd01891 68 NIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-----------MPQTRFVLKKALE----LGLKPI----------- 121 (194)
T ss_pred EEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEE-----------
Confidence 89999999888888999999999999999987420 0111222333322 257889
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 122 -------iv~NK~Dl~~ 131 (194)
T cd01891 122 -------VVINKIDRPD 131 (194)
T ss_pred -------EEEECCCCCC
Confidence 9999999864
No 191
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.34 E-value=0.0088 Score=53.97 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=44.0
Q ss_pred EEEecCCcc----cccc---ccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCC------CCCCe
Q psy16468 198 TMVDVGGQR----SERR---KWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPW------FQHSM 264 (463)
Q Consensus 198 ~i~DvgGqr----~eR~---kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~------~~~~~ 264 (463)
.++|++|+. ..+. .|...+.++++|+||+|.++-+.. ...+...+.......+..... +.+.|
T Consensus 47 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 47 QVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred EEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 889999972 1122 334456789999999998753200 001222222233333332221 24689
Q ss_pred eEecCCccccccccccccceeeecchhhhch
Q psy16468 265 VDVGGQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 265 il~~~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
++ +++||+|+...
T Consensus 123 ~i------------------vv~NK~Dl~~~ 135 (176)
T cd01881 123 VI------------------YVLNKIDLDDA 135 (176)
T ss_pred eE------------------EEEEchhcCch
Confidence 99 99999998643
No 192
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.32 E-value=0.0087 Score=61.64 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=47.1
Q ss_pred EEEecCCcc-------ccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhc-CCCCCCCeeEecC
Q psy16468 198 TMVDVGGQR-------SERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIIT-YPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr-------~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~-~~~~~~~~il~~~ 269 (463)
.++|++|.. .....|..+.+.+++++||+|+++.+ .+++...+.+.+.. .+.+.+.|++
T Consensus 209 ~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~----------s~e~~~~~~~EL~~~~~~L~~kp~I--- 275 (335)
T PRK12299 209 VIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD----------PVEDYKTIRNELEKYSPELADKPRI--- 275 (335)
T ss_pred EEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC----------CHHHHHHHHHHHHHhhhhcccCCeE---
Confidence 899999973 23467777888999999999998543 12222222233322 2345678999
Q ss_pred Cccccccccccccceeeecchhhhc
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 276 ---------------IV~NKiDL~~ 285 (335)
T PRK12299 276 ---------------LVLNKIDLLD 285 (335)
T ss_pred ---------------EEEECcccCC
Confidence 9999999864
No 193
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.0088 Score=62.40 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=44.1
Q ss_pred cccccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 155 RVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 155 ~~r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
|-|..|.-+.-..|..+...+ .++|..|.|---+.-+.-+...++-|+|||.+.
T Consensus 67 RerGvTi~~~~~~fet~k~~~----------------------tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~ 120 (428)
T COG5256 67 RERGVTIDVAHSKFETDKYNF----------------------TIIDAPGHRDFVKNMITGASQADVAVLVVDARD 120 (428)
T ss_pred HhcceEEEEEEEEeecCCceE----------------------EEeeCCchHHHHHHhhcchhhccEEEEEEECCC
Confidence 456666666667788777767 999999988888888888888999999999774
No 194
>KOG0092|consensus
Probab=96.20 E-value=0.027 Score=53.09 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=52.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.|||.+||..-+-.=.-||+++.+.|-|-|+.+. ..+..++..++.+-..-. .++-+.
T Consensus 57 eIWDTAGQERy~slapMYyRgA~AAivvYDit~~----------~SF~~aK~WvkeL~~~~~-~~~via----------- 114 (200)
T KOG0092|consen 57 EIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE----------ESFEKAKNWVKELQRQAS-PNIVIA----------- 114 (200)
T ss_pred EEEEcCCcccccccccceecCCcEEEEEEecccH----------HHHHHHHHHHHHHHhhCC-CCeEEE-----------
Confidence 8999999977666566689999999999998854 345667777777665433 455566
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
|+.||+|+.+.
T Consensus 115 -------lvGNK~DL~~~ 125 (200)
T KOG0092|consen 115 -------LVGNKADLLER 125 (200)
T ss_pred -------Eecchhhhhhc
Confidence 89999999883
No 195
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.19 E-value=0.017 Score=51.14 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=42.4
Q ss_pred EEEecCCcccccc------ccccccC--cccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERR------KWIHCFE--NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~------kW~~~f~--~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.++|++|+..... .|..++. +++++|+|+|.+..++ ....+..+.. .+.|++
T Consensus 46 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------------~~~~~~~~~~----~~~~~i--- 105 (158)
T cd01879 46 EIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLER-------------NLYLTLQLLE----LGLPVV--- 105 (158)
T ss_pred EEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchh-------------HHHHHHHHHH----cCCCEE---
Confidence 8999999865443 2556664 8999999999875321 1122333332 258999
Q ss_pred Cccccccccccccceeeecchhhhc
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 106 ---------------iv~NK~Dl~~ 115 (158)
T cd01879 106 ---------------VALNMIDEAE 115 (158)
T ss_pred ---------------EEEehhhhcc
Confidence 9999999854
No 196
>PRK09866 hypothetical protein; Provisional
Probab=96.15 E-value=0.01 Score=65.40 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=20.0
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
+.++.+.++|+.++||||+++.+
T Consensus 67 ~~~~~valvG~sgaGKSTLiNaL 89 (741)
T PRK09866 67 RLEMVLAIVGTMKAGKSTTINAI 89 (741)
T ss_pred ccceEEEEECCCCCCHHHHHHHH
Confidence 44578999999999999998875
No 197
>KOG0395|consensus
Probab=96.15 E-value=0.017 Score=54.92 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=53.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.|+|.+||..-..-=.+|..+.++-+.|.|++ +...++++..+.+.|...+.-.+.|++
T Consensus 54 ~ilDt~g~~~~~~~~~~~~~~~~gF~lVysit----------d~~SF~~~~~l~~~I~r~~~~~~~Piv----------- 112 (196)
T KOG0395|consen 54 EILDTAGQEEFSAMRDLYIRNGDGFLLVYSIT----------DRSSFEEAKQLREQILRVKGRDDVPII----------- 112 (196)
T ss_pred EEEcCCCcccChHHHHHhhccCcEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCcCCCCEE-----------
Confidence 78999995433222234556677777777766 456678899999999877888889999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 113 -------lVGNK~Dl~~~ 123 (196)
T KOG0395|consen 113 -------LVGNKCDLERE 123 (196)
T ss_pred -------EEEEcccchhc
Confidence 99999999885
No 198
>PRK08118 topology modulation protein; Reviewed
Probab=96.09 E-value=0.0041 Score=57.47 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
||+++|++||||||+.|++--..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999874443
No 199
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.02 E-value=0.015 Score=61.57 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCCcceeEEEECCCCCChhHHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
.....++|.++|..++||||+++.+
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L 29 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQAL 29 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHh
Confidence 3456789999999999999999887
No 200
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.99 E-value=0.039 Score=59.06 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=27.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|++.--+..+.....++++|+|||.++
T Consensus 88 ~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 88 TIIDAPGHRDFIKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred EEEECCChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence 899999987666666667778999999999764
No 201
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.95 E-value=0.037 Score=58.37 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=20.5
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcCCC
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHGSG 40 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~~g 40 (463)
+++.++|..+|||||++.++ ++..|
T Consensus 1 ~~~~~vGhvd~GKSTL~~~l--l~~~g 25 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRL--LHDTK 25 (406)
T ss_pred CeEEEECCCCCCchhhhHHH--HHHcC
Confidence 47999999999999999985 45444
No 202
>KOG0086|consensus
Probab=95.95 E-value=0.026 Score=51.42 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=29.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.|||..||..-|..-..||.+..+-+.|-|+..
T Consensus 61 QIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts 93 (214)
T KOG0086|consen 61 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 93 (214)
T ss_pred EEeecccHHHHHHHHHHHhccccceEEEEeccc
Confidence 899999998888888899999998888888664
No 203
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.95 E-value=0.017 Score=51.98 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=42.2
Q ss_pred EEEecCCcccc-------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCC
Q psy16468 198 TMVDVGGQRSE-------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQ 270 (463)
Q Consensus 198 ~i~DvgGqr~e-------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~ 270 (463)
.+||++|+... ++.|....+++++++||+|.++-++ ....+..-.+.+.... +...+.|++
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~------~~~~~~~~~~~l~~~~--~~~~~~p~i---- 118 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDD------PVEDYKTIRNELELYN--PELLEKPRI---- 118 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCC------HHHHHHHHHHHHHHhC--ccccccccE----
Confidence 89999997311 2233334456999999999885310 1112222222222221 234578899
Q ss_pred ccccccccccccceeeecchhhhc
Q psy16468 271 RSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 271 ~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 119 --------------vv~NK~Dl~~ 128 (170)
T cd01898 119 --------------VVLNKIDLLD 128 (170)
T ss_pred --------------EEEEchhcCC
Confidence 9999999754
No 204
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.0052 Score=57.61 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.4
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
||++||++||||||+.|++--.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987533
No 205
>CHL00071 tufA elongation factor Tu
Probab=95.93 E-value=0.032 Score=58.88 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|.+...+........++.+++|+|..+
T Consensus 78 ~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~ 110 (409)
T CHL00071 78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAAD 110 (409)
T ss_pred EEEECCChHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 889999976443444445567999999999763
No 206
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=95.92 E-value=0.026 Score=54.76 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
|+.++|..++||||+++++.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~ 20 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLT 20 (224)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999875
No 207
>PRK07261 topology modulation protein; Provisional
Probab=95.90 E-value=0.0057 Score=56.72 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
||+++|++||||||+.+++--.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999997543
No 208
>COG4639 Predicted kinase [General function prediction only]
Probab=95.89 E-value=0.0084 Score=54.91 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=16.1
Q ss_pred EEEECCCCCChhHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQ 32 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQ 32 (463)
++|.|+++|||||++|+
T Consensus 5 vvL~G~~~sGKsT~ak~ 21 (168)
T COG4639 5 VVLRGASGSGKSTFAKE 21 (168)
T ss_pred EEEecCCCCchhHHHHH
Confidence 78999999999999998
No 209
>PRK12739 elongation factor G; Reviewed
Probab=95.89 E-value=0.052 Score=61.24 Aligned_cols=65 Identities=8% Similarity=0.041 Sum_probs=47.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+.....-|......++++|+|+|.++-- ......++..+.. .+.|++
T Consensus 76 ~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~-----------~~qt~~i~~~~~~----~~~p~i----------- 129 (691)
T PRK12739 76 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV-----------EPQSETVWRQADK----YGVPRI----------- 129 (691)
T ss_pred EEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC-----------CHHHHHHHHHHHH----cCCCEE-----------
Confidence 89999998766667888889999999999976421 1122344444433 247889
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+...
T Consensus 130 -------v~iNK~D~~~~ 140 (691)
T PRK12739 130 -------VFVNKMDRIGA 140 (691)
T ss_pred -------EEEECCCCCCC
Confidence 99999998753
No 210
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.87 E-value=0.0064 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.|+|.|+++|||||+.|++.--
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998643
No 211
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.86 E-value=0.014 Score=44.57 Aligned_cols=44 Identities=32% Similarity=0.458 Sum_probs=32.1
Q ss_pred cEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchh
Q psy16468 220 TSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQ 291 (463)
Q Consensus 220 ~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D 291 (463)
++|+|++|+|+.. .-.+++-+.+|+++- +.|.+.|++ +++||+|
T Consensus 15 ~~ilfi~D~Se~C--------Gysie~Q~~L~~~ik--~~F~~~P~i------------------~V~nK~D 58 (58)
T PF06858_consen 15 DAILFIIDPSEQC--------GYSIEEQLSLFKEIK--PLFPNKPVI------------------VVLNKID 58 (58)
T ss_dssp SEEEEEE-TT-TT--------SS-HHHHHHHHHHHH--HHTTTS-EE------------------EEE--TT
T ss_pred ceEEEEEcCCCCC--------CCCHHHHHHHHHHHH--HHcCCCCEE------------------EEEeccC
Confidence 6899999999764 336778889999996 578899999 9999998
No 212
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.84 E-value=0.017 Score=62.10 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=59.0
Q ss_pred EEEecCCcccc--------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSE--------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~e--------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||+||+... +..|..++.++++||||+|.++-.. .+-..+..++.. .+.|++
T Consensus 89 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s------------~~~~~i~~~l~~---~~~pii--- 150 (472)
T PRK03003 89 TVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT------------ATDEAVARVLRR---SGKPVI--- 150 (472)
T ss_pred EEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC------------HHHHHHHHHHHH---cCCCEE---
Confidence 89999998532 3446678899999999999874311 011111122221 368999
Q ss_pred Cccccccccccccceeeecchhhhchhh--hhhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYN--VILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki--~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..... ....+..+...||--.-...++++..++|...+
T Consensus 151 ---------------lV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 151 ---------------LAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred ---------------EEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 9999999853211 111111233334322222346888888888777
No 213
>KOG0078|consensus
Probab=95.80 E-value=0.024 Score=54.15 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=52.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||.+||..-|..-..||.+..+|+-|.|++.. ...+.... |-..+....-..++++
T Consensus 64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne----------~Sfeni~~-W~~~I~e~a~~~v~~~----------- 121 (207)
T KOG0078|consen 64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNE----------KSFENIRN-WIKNIDEHASDDVVKI----------- 121 (207)
T ss_pred EEEEcccchhHHHHHHHHHhhcCeeEEEEEccch----------HHHHHHHH-HHHHHHhhCCCCCcEE-----------
Confidence 8999999999999999999999999999998842 22222333 4444444334478899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
|+.||+|+..+
T Consensus 122 -------LvGNK~D~~~~ 132 (207)
T KOG0078|consen 122 -------LVGNKCDLEEK 132 (207)
T ss_pred -------Eeecccccccc
Confidence 99999999773
No 214
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=95.77 E-value=0.049 Score=62.12 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.5
Q ss_pred ceeEEEECCCCCChhHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQm 33 (463)
.++|.++|.++|||||++.++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~L 23 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQL 23 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999986
No 215
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.71 E-value=0.092 Score=58.60 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHhcCCC
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRIIHGSG 40 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii~~~g 40 (463)
....++|.++|..+|||||++-++ ++..|
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~L--l~~~~ 49 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRL--LYDSK 49 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHH--HHHhC
Confidence 356689999999999999999885 45444
No 216
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=95.67 E-value=0.02 Score=61.93 Aligned_cols=112 Identities=9% Similarity=0.023 Sum_probs=60.3
Q ss_pred EEEecCCccc---c----ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcC-------CCCCCC
Q psy16468 198 TMVDVGGQRS---E----RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY-------PWFQHS 263 (463)
Q Consensus 198 ~i~DvgGqr~---e----R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~-------~~~~~~ 263 (463)
.++|++|... + ...+....+.++.||||+|+++.+.. ......++.....+...... ..+.+.
T Consensus 209 ~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 209 TVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred EEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 8999999631 1 22344456889999999998853200 00111222222222222211 134578
Q ss_pred eeEecCCccccccccccccceeeecchhhhchh-hhhhccCCc----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 264 MVDVGGQRSERRKWIHCFENVTFCNSVQLFSQY-NVILNCMNY----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 264 ~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ek-i~~~~~~~l----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
|++ +++||+|+...+ +.......+ ..+||--.-....+++...++.+.+
T Consensus 286 P~I------------------VVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 286 PRL------------------VVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred CEE------------------EEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999 999999986432 110000011 1234433333456888888888777
No 217
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=95.59 E-value=0.048 Score=57.94 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=60.7
Q ss_pred EEEecCCccc-------cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCC
Q psy16468 198 TMVDVGGQRS-------ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQ 270 (463)
Q Consensus 198 ~i~DvgGqr~-------eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~ 270 (463)
.++|++|... ....|....+.++.++||+|+++.+. ......+..-+..++.. .+.+.+.|++
T Consensus 209 ~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~----~dp~e~~~~i~~EL~~y--~~~L~~kP~I---- 278 (424)
T PRK12297 209 VMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEG----RDPIEDYEKINKELKLY--NPRLLERPQI---- 278 (424)
T ss_pred EEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCcccc----CChHHHHHHHHHHHhhh--chhccCCcEE----
Confidence 8999999732 23455666778999999999985420 00111122112222221 2445678999
Q ss_pred ccccccccccccceeeecchhhhch--hhhhhccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 271 RSERRKWIHCFENVTFCNSVQLFSQ--YNVILNCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 271 ~~~~v~~~~~~~~~l~lNK~D~~~e--ki~~~~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+... .+... +..+ ..+||--.-....+++..++|.+..
T Consensus 279 --------------VV~NK~DL~~~~e~l~~l-~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 279 --------------VVANKMDLPEAEENLEEF-KEKLGPKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred --------------EEEeCCCCcCCHHHHHHH-HHHhCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999997322 12111 0011 1234433333346888888887766
No 218
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.56 E-value=0.012 Score=54.84 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
-.+++.|++||||||++||+-.+-+
T Consensus 30 e~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccC
Confidence 3789999999999999999887644
No 219
>KOG3883|consensus
Probab=95.47 E-value=0.11 Score=47.53 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=45.9
Q ss_pred EEEecCCcccc-ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSE-RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~e-R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
++.|..|-+.. -..=.|||+-.++.+.|-|..++. ..+|++.-++..+ .+..-+..||+
T Consensus 63 ~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e-------Sf~rv~llKk~Id---k~KdKKEvpiV---------- 122 (198)
T KOG3883|consen 63 RLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE-------SFQRVELLKKEID---KHKDKKEVPIV---------- 122 (198)
T ss_pred EEeecccccCchhhhhHhHhccCceEEEEecCCCHH-------HHHHHHHHHHHHh---hccccccccEE----------
Confidence 77888777665 333468999999988887766553 3455543333222 24555678999
Q ss_pred ccccccceeeecchhhhc
Q psy16468 277 WIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~ 294 (463)
++.||.|+-+
T Consensus 123 --------VLaN~rdr~~ 132 (198)
T KOG3883|consen 123 --------VLANKRDRAE 132 (198)
T ss_pred --------EEechhhccc
Confidence 9999999853
No 220
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.32 E-value=0.012 Score=51.83 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=17.7
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
|+|.|++||||||+.+++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999976
No 221
>PLN00043 elongation factor 1-alpha; Provisional
Probab=95.31 E-value=0.11 Score=55.73 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=27.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|+..-.+.=+.....+++.|.|||..+
T Consensus 88 ~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 88 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred EEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 899999987665555667788999999999874
No 222
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.27 E-value=0.019 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
-.|+.|..||||||++..|..+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998553
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=95.22 E-value=0.14 Score=53.98 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.9
Q ss_pred CCcceeEEEECCCCCChhHHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
....+++.++|..++||||++..|-
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~ 33 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAIT 33 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHH
Confidence 4567889999999999999999873
No 224
>KOG1673|consensus
Probab=95.21 E-value=0.068 Score=48.98 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=42.6
Q ss_pred CCCCCccccccccccccceeE--EEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEE
Q psy16468 145 NYLPTEQDILRVRVPTTGIIE--YPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSI 222 (463)
Q Consensus 145 ~Y~PT~~Dil~~r~~T~Gi~e--~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~i 222 (463)
.|+-.+.| ..+..|.|++. ..+.+.+..+ .+.+||+||||..+..-.-.-.+.-+|
T Consensus 39 kYV~~~~d--e~~~q~~GvN~mdkt~~i~~t~I--------------------sfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 39 KYVQNEYD--EEYTQTLGVNFMDKTVSIRGTDI--------------------SFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred hhhcchhH--HHHHHHhCccceeeEEEecceEE--------------------EEEEEecCCcHhhhccCceeecCcEEE
Confidence 34444445 55677888864 4566666443 139999999995554444334567799
Q ss_pred EEEEeccc
Q psy16468 223 IFLVALSE 230 (463)
Q Consensus 223 iFvv~ls~ 230 (463)
+|+-||+.
T Consensus 97 lFmFDLt~ 104 (205)
T KOG1673|consen 97 LFMFDLTR 104 (205)
T ss_pred EEEEecCc
Confidence 99999984
No 225
>PLN03127 Elongation factor Tu; Provisional
Probab=95.12 E-value=0.19 Score=53.76 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.3
Q ss_pred CCCCcceeEEEECCCCCChhHHHHHH
Q psy16468 8 SCPALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 8 ~~~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
+.....++|.++|..++||||++..+
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L 81 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAI 81 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHH
Confidence 34566788999999999999999986
No 226
>PRK06217 hypothetical protein; Validated
Probab=95.01 E-value=0.021 Score=53.18 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.8
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+|+|.|.+||||||+.+++.-..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 379999999999999999987544
No 227
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.96 E-value=0.064 Score=60.79 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=41.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+......=...+..++++|+|+|..+-- ..++..++..+.+ .+.|++
T Consensus 89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~-----------~~~t~~~~~~~~~----~~~p~i----------- 142 (720)
T TIGR00490 89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV-----------MPQTETVLRQALK----ENVKPV----------- 142 (720)
T ss_pred EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCC-----------CccHHHHHHHHHH----cCCCEE-----------
Confidence 88999998543333344678899999999976421 1122333443332 246778
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|...
T Consensus 143 -------vviNKiD~~~ 152 (720)
T TIGR00490 143 -------LFINKVDRLI 152 (720)
T ss_pred -------EEEEChhccc
Confidence 9999999864
No 228
>KOG0394|consensus
Probab=94.85 E-value=0.41 Score=45.19 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=26.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEecc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALS 229 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls 229 (463)
.|||.+||..-+..-..+|++.++.+-|-|+.
T Consensus 61 QiWDTAGQERFqsLg~aFYRgaDcCvlvydv~ 92 (210)
T KOG0394|consen 61 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 92 (210)
T ss_pred EEEecccHHHhhhcccceecCCceEEEEeecC
Confidence 89999999877777788899999888876655
No 229
>PLN03126 Elongation factor Tu; Provisional
Probab=94.77 E-value=0.13 Score=55.51 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.2
Q ss_pred CCcceeEEEECCCCCChhHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
....+++.++|..++||||++.++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~L 101 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAAL 101 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHH
Confidence 356788999999999999999885
No 230
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.77 E-value=0.022 Score=48.52 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
+|+++|..++|||||++.+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~ 20 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALT 20 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 68999999999999998863
No 231
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.61 E-value=0.026 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=22.2
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+..++ .+.++|++||||||+++-+-.+-
T Consensus 25 v~~Ge-vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 25 VEKGE-VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EcCCC-EEEEECCCCCCHHHHHHHHHCCc
Confidence 34455 68899999999999998877653
No 232
>PRK00007 elongation factor G; Reviewed
Probab=94.40 E-value=0.29 Score=55.33 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.1
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
.+..+|.++|..++||||++.+|
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~l 30 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERI 30 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHH
Confidence 44568999999999999999886
No 233
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.32 E-value=0.034 Score=47.59 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=17.5
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
|+|-|..||||||+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 6899999999999999876
No 234
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=94.28 E-value=0.079 Score=58.73 Aligned_cols=83 Identities=17% Similarity=0.120 Sum_probs=60.0
Q ss_pred cccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhc
Q psy16468 157 RVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILF 236 (463)
Q Consensus 157 r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~ 236 (463)
|.-|.......+.+++.++ .++|++|+......|..++..++++++|||.++-
T Consensus 48 rGiTI~~~~~~v~~~~~ki----------------------nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G----- 100 (594)
T TIGR01394 48 RGITILAKNTAIRYNGTKI----------------------NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG----- 100 (594)
T ss_pred CCccEEeeeEEEEECCEEE----------------------EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-----
Confidence 4444444455677777777 9999999988777888899999999999998642
Q ss_pred cCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhc
Q psy16468 237 ESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 237 e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
-+..+...+..+.. .+.|++ +++||+|+..
T Consensus 101 ------~~~qT~~~l~~a~~----~~ip~I------------------VviNKiD~~~ 130 (594)
T TIGR01394 101 ------PMPQTRFVLKKALE----LGLKPI------------------VVINKIDRPS 130 (594)
T ss_pred ------CcHHHHHHHHHHHH----CCCCEE------------------EEEECCCCCC
Confidence 12334444555543 357889 9999999854
No 235
>PRK03839 putative kinase; Provisional
Probab=94.27 E-value=0.034 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
+|+|+|.+||||||+.+++---
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999987543
No 236
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=94.25 E-value=0.038 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.1
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
++.++|+++|.+++||||++.++.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 788999999999999999999764
No 237
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.22 E-value=0.034 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-++|.|++||||||+.+++--.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997543
No 238
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.20 E-value=0.035 Score=51.90 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++|+|++||||||++|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~ 23 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALR 23 (186)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999999884
No 239
>PRK14532 adenylate kinase; Provisional
Probab=94.07 E-value=0.039 Score=51.33 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
+|+|+|++||||||+.+.+-
T Consensus 2 ~i~~~G~pGsGKsT~a~~la 21 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLV 21 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999875
No 240
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.96 E-value=0.046 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.++|.|++||||||+++.+-...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 68999999999999999875443
No 241
>PRK08233 hypothetical protein; Provisional
Probab=93.96 E-value=0.041 Score=50.40 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.1
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
.-|.+.|++||||||+.+++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 456778999999999999876
No 242
>KOG0093|consensus
Probab=93.93 E-value=0.17 Score=45.99 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=54.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||..||..-|..--.++++..++|.+-|... ++. -.|++-|-..+..-.-.+.|++
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitN-------eeS----f~svqdw~tqIktysw~naqvi----------- 130 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITN-------EES----FNSVQDWITQIKTYSWDNAQVI----------- 130 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCC-------HHH----HHHHHHHHHHheeeeccCceEE-----------
Confidence 899999998888777789999999999988652 111 1234444444544455688999
Q ss_pred cccccceeeecchhhhchhhhh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVI 299 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~ 299 (463)
++.||+|+-+|+.-.
T Consensus 131 -------lvgnKCDmd~eRvis 145 (193)
T KOG0093|consen 131 -------LVGNKCDMDSERVIS 145 (193)
T ss_pred -------EEecccCCccceeee
Confidence 999999998887643
No 243
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=93.93 E-value=0.23 Score=45.71 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=43.7
Q ss_pred EEEecCCccc------cccccccc--cCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRS------ERRKWIHC--FENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~------eR~kW~~~--f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.++|+.|--+ +-+-+..+ .+.++.||.|+|.+ .++.++.+...+... +.|++
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~-------------~l~r~l~l~~ql~e~----g~P~v--- 109 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDAT-------------NLERNLYLTLQLLEL----GIPVV--- 109 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGG-------------GHHHHHHHHHHHHHT----TSSEE---
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCC-------------CHHHHHHHHHHHHHc----CCCEE---
Confidence 7888888422 22334443 36899999999954 366777777777754 48999
Q ss_pred Cccccccccccccceeeecchhhhchhh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYN 297 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki 297 (463)
+++||+|..+++=
T Consensus 110 ---------------vvlN~~D~a~~~g 122 (156)
T PF02421_consen 110 ---------------VVLNKMDEAERKG 122 (156)
T ss_dssp ---------------EEEETHHHHHHTT
T ss_pred ---------------EEEeCHHHHHHcC
Confidence 9999999887643
No 244
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=93.91 E-value=0.18 Score=52.29 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=40.4
Q ss_pred EEEecCCcccc---------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQRSE---------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr~e---------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.+||+.|.-.. ++-| ....+++.|++|+|.++-+. ...+..-...++.+ ...+.|++
T Consensus 240 ~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~-------~~~~~~~~~~L~~l----~~~~~piI-- 305 (351)
T TIGR03156 240 LLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDR-------EEQIEAVEKVLEEL----GAEDIPQL-- 305 (351)
T ss_pred EEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCch-------HHHHHHHHHHHHHh----ccCCCCEE--
Confidence 89999998221 1112 23568899999999884321 01111112223332 22467999
Q ss_pred CCccccccccccccceeeecchhhhc
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 306 ----------------lV~NK~Dl~~ 315 (351)
T TIGR03156 306 ----------------LVYNKIDLLD 315 (351)
T ss_pred ----------------EEEEeecCCC
Confidence 9999999864
No 245
>KOG0079|consensus
Probab=93.90 E-value=0.17 Score=46.13 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=35.5
Q ss_pred eeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEecc
Q psy16468 176 RMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALS 229 (463)
Q Consensus 176 ~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls 229 (463)
+.+|+-|+|+. ..|||..||..-|.--..++++.+++|-|-|+.
T Consensus 48 rTv~i~G~~Vk----------LqIwDtAGqErFrtitstyyrgthgv~vVYDVT 91 (198)
T KOG0079|consen 48 RTVDINGDRVK----------LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 91 (198)
T ss_pred EEeecCCcEEE----------EEEeecccHHHHHHHHHHHccCCceEEEEEECc
Confidence 45566666542 388999999888888888999999999998876
No 246
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.89 E-value=0.044 Score=47.92 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||+++-+-
T Consensus 13 ~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEEccCCCccccceeeec
Confidence 78999999999999987643
No 247
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.88 E-value=0.042 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
||+++|++||||||+.+++---+
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999975333
No 248
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.85 E-value=0.039 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
||.|.|+.++||||+++++.-.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998855
No 249
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.83 E-value=0.046 Score=48.81 Aligned_cols=20 Identities=35% Similarity=0.285 Sum_probs=17.9
Q ss_pred EEEECCCCCChhHHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmri 35 (463)
++|.|.+||||||+.+++.-
T Consensus 2 i~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHh
Confidence 68999999999999999764
No 250
>PRK13949 shikimate kinase; Provisional
Probab=93.82 E-value=0.047 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=19.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+|+|+|++||||||+.|.+--..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999875433
No 251
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.80 E-value=0.045 Score=50.42 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++++|++||||||+++.+-
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999998875
No 252
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.77 E-value=0.057 Score=49.82 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=18.8
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
|+++|++||||||+.+++.--+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999976433
No 253
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.76 E-value=0.06 Score=42.16 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.5
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
+.+.|..+|||||+.+++.-.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998754
No 254
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.71 E-value=0.045 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.6
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
++|.|++||||||+.+++.-..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999977443
No 255
>PRK14530 adenylate kinase; Provisional
Probab=93.69 E-value=0.06 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.5
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
+|+|+|++||||||+.+.+--.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999854443
No 256
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.64 E-value=0.063 Score=52.35 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.8
Q ss_pred ceeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
..+|+|+|++||||||+.+++---++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999764443
No 257
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.60 E-value=0.058 Score=46.29 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=17.3
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
|||.|++|+||||+++.+-
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 7999999999999999864
No 258
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.60 E-value=0.063 Score=49.80 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+|+|+|++||||||+.+++.--+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999876444
No 259
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.56 E-value=0.061 Score=47.24 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.1
Q ss_pred ceeEEEECCCCCChhHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQm 33 (463)
..+++++|+.||||||++..+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l 23 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNAL 23 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999885
No 260
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.52 E-value=0.055 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
.++|+|++||||||+++.+.-
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999888753
No 261
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.46 E-value=0.056 Score=51.44 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|+.+|||||++|++-
T Consensus 27 ~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 46899999999999999985
No 262
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=93.44 E-value=0.056 Score=47.71 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
+|+|+|.+++||||+++.+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALT 20 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 48999999999999999874
No 263
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.43 E-value=0.073 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=18.8
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
++|+|+.+|||||+++++.-.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999986443
No 264
>KOG0057|consensus
Probab=93.43 E-value=0.065 Score=57.88 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=22.7
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
++++ ||-++|++|||||||+|.+=..+.
T Consensus 376 ~kGe-kVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 376 PKGE-KVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred cCCC-EEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555 999999999999999998655543
No 265
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.40 E-value=0.061 Score=46.36 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=17.9
Q ss_pred eeEEEECCCCCChhHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQm 33 (463)
--++|+|++||||||+++.+
T Consensus 16 e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 16 VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHh
Confidence 46899999999999998885
No 266
>PRK02496 adk adenylate kinase; Provisional
Probab=93.39 E-value=0.076 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.6
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+++++|++||||||+.+.+--.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999975433
No 267
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=93.39 E-value=0.13 Score=47.54 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhh
Q psy16468 405 INRMEESKALFKTIITYPWFQHSSVILFLNKKDLL 439 (463)
Q Consensus 405 ~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf 439 (463)
.+|+.||.+.+..+++++-.++.|+++++||.|+-
T Consensus 94 ~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 94 PERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp GGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 45899999999999999999999999999999974
No 268
>PTZ00416 elongation factor 2; Provisional
Probab=93.33 E-value=0.31 Score=56.27 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=41.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|...--..=......++++|+|||..+-- ...+..+++.+... +.|++
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~-----------~~~t~~~~~~~~~~----~~p~i----------- 148 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGV-----------CVQTETVLRQALQE----RIRPV----------- 148 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCc-----------CccHHHHHHHHHHc----CCCEE-----------
Confidence 78999997442222244556789999999976421 11233455555543 47889
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+|+||+|..
T Consensus 149 -------v~iNK~D~~ 157 (836)
T PTZ00416 149 -------LFINKVDRA 157 (836)
T ss_pred -------EEEEChhhh
Confidence 999999997
No 269
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.31 E-value=0.077 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCChhHHHHHHHHh
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii 36 (463)
..-|.+.|++||||||+++++.-+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999998643
No 270
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=93.25 E-value=0.18 Score=52.99 Aligned_cols=73 Identities=12% Similarity=0.280 Sum_probs=46.1
Q ss_pred eEEEecCCcccc-------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhc-CCCCCCCeeEec
Q psy16468 197 VTMVDVGGQRSE-------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIIT-YPWFQHSMVDVG 268 (463)
Q Consensus 197 ~~i~DvgGqr~e-------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~-~~~~~~~~il~~ 268 (463)
+.++|++|.... ..+.....+.++.|+||+|++..+. .+.+++...+.+.+.. .+.+.+.|++
T Consensus 209 i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~e~~~~l~~eL~~~~~~L~~kP~I-- 279 (390)
T PRK12298 209 FVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPVENARIIINELEKYSPKLAEKPRW-- 279 (390)
T ss_pred EEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChHHHHHHHHHHHHhhhhhhcCCCEE--
Confidence 488999997421 1233445788999999999885431 1222222333343333 2345678999
Q ss_pred CCccccccccccccceeeecchhhhc
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 280 ----------------lVlNKiDl~~ 289 (390)
T PRK12298 280 ----------------LVFNKIDLLD 289 (390)
T ss_pred ----------------EEEeCCccCC
Confidence 9999999864
No 271
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=93.24 E-value=0.17 Score=49.08 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=45.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+......-...+..++++++|+|..+-- +.+...++..... .+.|++
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~-----------~~~t~~~l~~~~~----~~~p~i----------- 129 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGV-----------CVQTETVLRQALK----ERVKPV----------- 129 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCC-----------CHHHHHHHHHHHH----cCCCEE-----------
Confidence 88999999766555566788999999999987421 1223344444432 246889
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 130 -------lviNKiD~~~ 139 (222)
T cd01885 130 -------LVINKIDRLI 139 (222)
T ss_pred -------EEEECCCcch
Confidence 9999999864
No 272
>PRK14531 adenylate kinase; Provisional
Probab=93.24 E-value=0.081 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+|+++|++||||||+.+++.--+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999875433
No 273
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.17 E-value=0.066 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=19.7
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
.-++|+|++||||||+++++.-.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998643
No 274
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=93.10 E-value=0.076 Score=46.50 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
||+++|.+++||||++..+
T Consensus 2 kv~liG~~~vGKSsL~~~l 20 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQAL 20 (142)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 8999999999999999875
No 275
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.09 E-value=0.084 Score=50.06 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.2
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHh
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii 36 (463)
.+...|.|.|++||||||+.+.+.-.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999987643
No 276
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.07 E-value=0.092 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.1
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
+.|.|++||||||+.+.+.-+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999987554
No 277
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.98 E-value=0.079 Score=48.90 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.6
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
++|.|.++|||||+.|++.-.
T Consensus 5 i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999987644
No 278
>PF05729 NACHT: NACHT domain
Probab=92.96 E-value=0.075 Score=47.34 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=16.2
Q ss_pred EEEECCCCCChhHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQm 33 (463)
++|.|.+|+||||+++.+
T Consensus 3 l~I~G~~G~GKStll~~~ 20 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKL 20 (166)
T ss_pred EEEECCCCCChHHHHHHH
Confidence 689999999999998864
No 279
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.91 E-value=0.074 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.5
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
-.++++|+.||||||++|.+--+.
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcC
Confidence 378999999999999999886443
No 280
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.91 E-value=0.075 Score=50.30 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=19.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
+++|.|+.+|||||++|++-
T Consensus 31 ~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred EEEEECCCCCccHHHHHHHH
Confidence 79999999999999999987
No 281
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.90 E-value=0.072 Score=54.86 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=31.6
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC-------------CCCCHHHHh---------hhh-hhHHHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG-------------SGYSDEDKR---------GFI-KLVYQNIFMAMQ 62 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~-------------~g~s~~E~~---------~~r-~~I~~Nii~~~~ 62 (463)
=+.|||++||||||+++.+-=+.. ....+++|. .|- -.||.|+.-+++
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk 101 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLK 101 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhh
Confidence 378999999999999776653322 124455542 122 268999876665
No 282
>KOG0098|consensus
Probab=92.84 E-value=0.25 Score=46.72 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=48.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||.+-|..-..||.+..+.+.|-|+..-+ ..|.|..=|+ .+-. ..-.|+.++
T Consensus 58 qiwDtaGqe~frsv~~syYr~a~GalLVydit~r~-------sF~hL~~wL~---D~rq-~~~~NmvIm----------- 115 (216)
T KOG0098|consen 58 QIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRE-------SFNHLTSWLE---DARQ-HSNENMVIM----------- 115 (216)
T ss_pred EEEecCCcHHHHHHHHHHhccCcceEEEEEccchh-------hHHHHHHHHH---HHHH-hcCCCcEEE-----------
Confidence 99999999998888889999999999998876322 1222211111 1111 113467888
Q ss_pred cccccceeeecchhhhchh
Q psy16468 278 IHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek 296 (463)
|+.||.|+-..+
T Consensus 116 -------LiGNKsDL~~rR 127 (216)
T KOG0098|consen 116 -------LIGNKSDLEARR 127 (216)
T ss_pred -------EEcchhhhhccc
Confidence 999999997654
No 283
>PF13173 AAA_14: AAA domain
Probab=92.81 E-value=0.085 Score=46.14 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|.|+.++||||+++|+-
T Consensus 4 ~~~l~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLA 23 (128)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999974
No 284
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.80 E-value=0.11 Score=48.12 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=25.6
Q ss_pred CCCCcceeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 8 SCPALEASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 8 ~~~~~~~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
+|+.++ .++|||++|+||||+++-+-++.-
T Consensus 24 ~~~~ge-tlvllgpsgagkssllr~lnlle~ 53 (242)
T COG4161 24 DCPEGE-TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred cCCCCC-EEEEECCCCCchHHHHHHHHHHhC
Confidence 566666 789999999999999999988753
No 285
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=92.75 E-value=0.096 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEECCCCCChhHHHHHHHHhcC
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~~ 38 (463)
+.++|+.||||||+++++..+.+
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57999999999999999876654
No 286
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.74 E-value=0.11 Score=49.46 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=21.4
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.+....-++|.|++||||||+++++.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHH
Confidence 34456678899999999999999875
No 287
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.70 E-value=0.11 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=19.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+|+++|++||||||+.+++---+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999875433
No 288
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.67 E-value=0.092 Score=49.10 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
.+.|+|+.||||||++|-+
T Consensus 23 ~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999865
No 289
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.67 E-value=0.083 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
+.++|++||||||.+|.+-.+-
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6789999999999999986553
No 290
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.61 E-value=0.11 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEECCCCCChhHHHHHHHHhcCC
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIHGS 39 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~~~ 39 (463)
|-++|++|||||||++-+-.+..+
T Consensus 35 isIIGsSGSGKSTfLRCiN~LE~P 58 (256)
T COG4598 35 ISIIGSSGSGKSTFLRCINFLEKP 58 (256)
T ss_pred EEEecCCCCchhHHHHHHHhhcCC
Confidence 668999999999999999888653
No 291
>PRK12740 elongation factor G; Reviewed
Probab=92.61 E-value=0.2 Score=56.25 Aligned_cols=84 Identities=7% Similarity=0.046 Sum_probs=61.1
Q ss_pred ccccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhh
Q psy16468 156 VRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQIL 235 (463)
Q Consensus 156 ~r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~ 235 (463)
.|..|.+.....+.+++..+ .++|++|+......|...+..++++++|+|.++..+
T Consensus 43 ~rgiTi~~~~~~~~~~~~~i----------------------~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-- 98 (668)
T PRK12740 43 ERGISITSAATTCEWKGHKI----------------------NLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVE-- 98 (668)
T ss_pred hcCCCeeeceEEEEECCEEE----------------------EEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC--
Confidence 45666777777788887777 999999997666678888899999999999875321
Q ss_pred ccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhc
Q psy16468 236 FESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 236 ~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
.....++..+.. .+.|++ +++||+|...
T Consensus 99 ---------~~~~~~~~~~~~----~~~p~i------------------iv~NK~D~~~ 126 (668)
T PRK12740 99 ---------PQTETVWRQAEK----YGVPRI------------------IFVNKMDRAG 126 (668)
T ss_pred ---------HHHHHHHHHHHH----cCCCEE------------------EEEECCCCCC
Confidence 122333433332 257899 9999999764
No 292
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.60 E-value=0.092 Score=47.59 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
|++|+|+.+|||||++..+.
T Consensus 3 rimliG~~g~GKTTL~q~L~ 22 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALN 22 (143)
T ss_pred eEEEECCCCCCHHHHHHHHc
Confidence 79999999999999976653
No 293
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.56 E-value=0.085 Score=54.65 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=15.5
Q ss_pred EEEECCCCCChhHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQm 33 (463)
+-|||++||||||+++.+
T Consensus 34 ~~lLGPSGcGKTTlLR~I 51 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMI 51 (352)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 569999999999996654
No 294
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=92.55 E-value=0.38 Score=55.64 Aligned_cols=63 Identities=8% Similarity=0.059 Sum_probs=42.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|+.|+..--.-=......+++.|.|||..+-=+ ..+..+++.+.. .+.|++
T Consensus 101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~-----------~~t~~~~~~~~~----~~~p~i----------- 154 (843)
T PLN00116 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----------VQTETVLRQALG----ERIRPV----------- 154 (843)
T ss_pred EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc-----------ccHHHHHHHHHH----CCCCEE-----------
Confidence 789999974433323445567899999999774211 122344555543 357889
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+|+||+|..
T Consensus 155 -------~~iNK~D~~ 163 (843)
T PLN00116 155 -------LTVNKMDRC 163 (843)
T ss_pred -------EEEECCccc
Confidence 999999988
No 295
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.54 E-value=0.089 Score=52.23 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHh
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii 36 (463)
+.+++ +-|||+.||||||++|-|--+
T Consensus 26 ~~G~i-~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 26 PKGEI-TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cCCcE-EEEECCCCCCHHHHHHHHhcc
Confidence 34443 568999999999999987543
No 296
>PRK13695 putative NTPase; Provisional
Probab=92.44 E-value=0.1 Score=48.05 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=18.0
Q ss_pred eeEEEECCCCCChhHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQm 33 (463)
.|++|.|++||||||+++++
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999873
No 297
>PRK06762 hypothetical protein; Provisional
Probab=92.44 E-value=0.13 Score=46.84 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.0
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
-+++.|.+||||||+.+++.--++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999865443
No 298
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.43 E-value=0.098 Score=50.41 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999988764
No 299
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=92.42 E-value=0.18 Score=55.87 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=30.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+...+..|..++..++++++|+|.++
T Consensus 72 ~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 72 LFIDTPGHEAFTNLRKRGGALADLAILIVDINE 104 (590)
T ss_pred EEEECCCcHhHHHHHHHHHhhCCEEEEEEECCc
Confidence 889999998888889999999999999999874
No 300
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.42 E-value=0.1 Score=44.53 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.7
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
--+++.|++|+||||+++.+--.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999987533
No 301
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.42 E-value=0.1 Score=49.47 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999987765
No 302
>PRK14527 adenylate kinase; Provisional
Probab=92.41 E-value=0.098 Score=48.99 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.0
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.-++++|++||||||+.+++---|
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999875333
No 303
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=92.40 E-value=0.11 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
....+|+++|.+++||||+++.+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~ 45 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALT 45 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 456799999999999999999764
No 304
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=92.38 E-value=0.3 Score=54.14 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=56.0
Q ss_pred EEEecCCccccccc------ccccc--CcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERRK------WIHCF--ENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~k------W~~~f--~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.++|++|+.+.... +..++ ++++.|++|+|.++.++ .+.+...+.. .+.|++
T Consensus 44 ~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler-------------~l~l~~ql~~----~~~PiI--- 103 (591)
T TIGR00437 44 EIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER-------------NLYLTLQLLE----LGIPMI--- 103 (591)
T ss_pred EEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh-------------hHHHHHHHHh----cCCCEE---
Confidence 89999998664432 33333 47899999999875321 2333333333 258999
Q ss_pred CccccccccccccceeeecchhhhchhhhhhccCCcc-----ccCCCCCCCcccHHHHHHHHHHH
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYT-----IVPPLHTGPQRDAIAAREFILRM 329 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~-----~~fp~f~g~~~~~~~a~~fi~~~ 329 (463)
+++||+|+.+++-.......++ .++|--.-...++++..+.+.+.
T Consensus 104 ---------------IVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 104 ---------------LALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred ---------------EEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999865331110000111 13332222334678888887654
No 305
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=92.38 E-value=0.11 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.7
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
++|+.++|.+++||||+++.+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~ 22 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALR 22 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999999864
No 306
>PRK14528 adenylate kinase; Provisional
Probab=92.36 E-value=0.13 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+++++|++||||||+.+++.--+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999985333
No 307
>PRK06547 hypothetical protein; Provisional
Probab=92.36 E-value=0.08 Score=49.30 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=23.3
Q ss_pred CCCCCCcceeEEEECCCCCChhHHHHHHH
Q psy16468 6 RNSCPALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 6 ~~~~~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+..++.....|++-|.+||||||+.+.+.
T Consensus 8 ~~~~~~~~~~i~i~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 8 ARLCGGGMITVLIDGRSGSGKTTLAGALA 36 (172)
T ss_pred HHhhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 33456677788888999999999998874
No 308
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.36 E-value=0.11 Score=53.28 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=25.1
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcCCCCC
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHGSGYS 42 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~~g~s 42 (463)
-+++++|++||||||+++.+--.++..+-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 48999999999999999999888776553
No 309
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.36 E-value=0.1 Score=49.23 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988764
No 310
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.34 E-value=0.1 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
+.|.|++||||||+++.+.-+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 4688999999999999887543
No 311
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.33 E-value=0.11 Score=48.81 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=20.2
Q ss_pred CCCCcceeEEEECCCCCChhHHHHHH
Q psy16468 8 SCPALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 8 ~~~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
|++++|| +.|-|++||||||++|.+
T Consensus 33 sV~aGEC-vvL~G~SG~GKStllr~L 57 (235)
T COG4778 33 SVNAGEC-VVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred EecCccE-EEeeCCCCCcHHHHHHHH
Confidence 5668886 677899999999996654
No 312
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.32 E-value=0.083 Score=59.63 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=23.9
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhcCC
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIHGS 39 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~~~ 39 (463)
.+| ++.++|.+||||||++|-|-=+|.+
T Consensus 498 ~Ge-~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGE-KVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 444 8999999999999999998877764
No 313
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.27 E-value=0.11 Score=49.21 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++|.|+.+|||||++|++-
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999976
No 314
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.27 E-value=0.11 Score=49.51 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=19.0
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-|-
T Consensus 29 ~G~-~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 29 KGE-FVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred CCC-EEEEEcCCCCCHHHHHHHHh
Confidence 344 68999999999999988764
No 315
>PRK11058 GTPase HflX; Provisional
Probab=92.22 E-value=0.33 Score=51.69 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=55.2
Q ss_pred eEEEecCCcccc--c------cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 197 VTMVDVGGQRSE--R------RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 197 ~~i~DvgGqr~e--R------~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
+.++|..|.-.. . +.+.....+.+.|++|+|.++-+ ..+.+..+..++..-.-.+.|++
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~-----------~~e~l~~v~~iL~el~~~~~pvI-- 313 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVR-----------VQENIEAVNTVLEEIDAHEIPTL-- 313 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCcc-----------HHHHHHHHHHHHHHhccCCCCEE--
Confidence 389999998322 1 22334457899999999987421 11222222222221112368999
Q ss_pred CCccccccccccccceeeecchhhhchhhhhhc--cCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFSQYNVILN--CMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~--~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+...... ......+++--.-...++++..++|...+
T Consensus 314 ----------------iV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 314 ----------------LVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred ----------------EEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999998643211100 00000011111111235788888887766
No 316
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=92.21 E-value=0.66 Score=45.98 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=58.3
Q ss_pred EEEecCCcccccc--------ccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERR--------KWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~--------kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.++|++|....++ .+..++++++.|+||+|.++.... . ..+.+.+-. .+.|++
T Consensus 51 i~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~----------~--~~i~~~l~~----~~~p~i--- 111 (270)
T TIGR00436 51 IFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGD----------G--EFVLTKLQN----LKRPVV--- 111 (270)
T ss_pred EEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCch----------H--HHHHHHHHh----cCCCEE---
Confidence 8899999854322 234567899999999998753210 0 111222211 257899
Q ss_pred Cccccccccccccceeeecchhhhchh-hh----hh-ccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQY-NV----IL-NCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~ek-i~----~~-~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+.... +. .. ...++..+||--.-...++++..+++.+..
T Consensus 112 ---------------lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 112 ---------------LTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred ---------------EEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 999999985321 11 10 001233455544444457888888887765
No 317
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.19 E-value=0.11 Score=50.68 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=20.1
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHh
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii 36 (463)
+++ -+.++|++||||||++.-+-.+
T Consensus 30 ~Ge-~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 30 AGE-FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcc
Confidence 444 5889999999999998876644
No 318
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.16 E-value=0.11 Score=49.27 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred cEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988765
No 319
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.16 E-value=0.11 Score=49.34 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988764
No 320
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.07 E-value=0.12 Score=47.76 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.++|+.||||||++|.+-
T Consensus 30 ~~~i~G~nGsGKStLl~~l~ 49 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLT 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988865
No 321
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.06 E-value=0.12 Score=48.31 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999988764
No 322
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.06 E-value=0.095 Score=51.54 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=22.8
Q ss_pred CCCCCCcceeEEEECCCCCChhHHHHHH
Q psy16468 6 RNSCPALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 6 ~~~~~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
+++.-....+++++|..||||||+++-+
T Consensus 6 ~~~l~~~~fr~viIG~sGSGKT~li~~l 33 (241)
T PF04665_consen 6 RNSLLKDPFRMVIIGKSGSGKTTLIKSL 33 (241)
T ss_pred hhHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 4455567789999999999999987654
No 323
>PRK14526 adenylate kinase; Provisional
Probab=92.05 E-value=0.12 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
+++|+|++||||||+.+.+-
T Consensus 2 ~i~l~G~pGsGKsT~a~~La 21 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILS 21 (211)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998875
No 324
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.05 E-value=0.11 Score=49.07 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988765
No 325
>PRK00625 shikimate kinase; Provisional
Probab=92.04 E-value=0.12 Score=48.14 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.|+|+|.+||||||+.|++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La 21 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999984
No 326
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.03 E-value=0.11 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=17.3
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
.+| =|-+||++||||||+++-+
T Consensus 28 ~GE-fvsilGpSGcGKSTLLrii 49 (248)
T COG1116 28 KGE-FVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred CCC-EEEEECCCCCCHHHHHHHH
Confidence 344 4789999999999996644
No 327
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.02 E-value=0.13 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.|+|.|.+||||||+.|.+.-..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 47999999999999999987433
No 328
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.01 E-value=0.12 Score=49.12 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999987654
No 329
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.00 E-value=0.11 Score=49.59 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~ 34 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLC 34 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988765
No 330
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=92.00 E-value=0.11 Score=50.25 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.5
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
-.+|+|+.||||||+++.+-.+.+
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999875544
No 331
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.98 E-value=0.12 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.9
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-+-
T Consensus 25 ~Ge-~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 25 DGE-FVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHh
Confidence 344 58999999999999987765
No 332
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.98 E-value=0.11 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=18.4
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
+++.|.+||||||+.+++.--+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 6777999999999999976444
No 333
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.97 E-value=0.12 Score=49.42 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 334
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.96 E-value=0.12 Score=48.84 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999987764
No 335
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.95 E-value=0.12 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=18.9
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-|-
T Consensus 25 ~Ge-~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 25 PGE-FLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHh
Confidence 444 58999999999999987754
No 336
>PLN02200 adenylate kinase family protein
Probab=91.93 E-value=0.17 Score=49.36 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=21.1
Q ss_pred cceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
....|+++|++||||||+.+.+.--+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999875333
No 337
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.93 E-value=0.12 Score=45.57 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=16.8
Q ss_pred EEEECCCCCChhHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQm 33 (463)
+++.|++|+||||+++++
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 689999999999999987
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.92 E-value=0.12 Score=48.39 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.7
Q ss_pred CCcceeEEEECCCCCChhHHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+.++ .+.|+|+.||||||++|-+-
T Consensus 23 ~~Ge-~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 23 KEGE-VIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred CCCC-EEEEECCCCChHHHHHHHHH
Confidence 3444 78999999999999988754
No 339
>PRK14529 adenylate kinase; Provisional
Probab=91.90 E-value=0.15 Score=49.64 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=20.9
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
.+|+|+|++||||||+.+.+.--++
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3799999999999999998765443
No 340
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=91.87 E-value=0.13 Score=48.38 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.|||+|+.|||||+++-|+.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~ 24 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLV 24 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 69999999999999998875
No 341
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.87 E-value=0.13 Score=49.49 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
.+.|+|+.||||||++|.|-=
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G 55 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998753
No 342
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.83 E-value=0.13 Score=50.41 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=18.1
Q ss_pred EEEECCCCCChhHHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmri 35 (463)
|+|.|.+||||||+.+++.-
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999863
No 343
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.82 E-value=0.13 Score=48.94 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988764
No 344
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.82 E-value=0.12 Score=49.17 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988764
No 345
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.81 E-value=0.13 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.3
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
.+|+|+|..||||||+.+.+--
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999998753
No 346
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.79 E-value=0.12 Score=49.93 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999987654
No 347
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.78 E-value=0.13 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-|-=+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999998876533
No 348
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=91.78 E-value=0.13 Score=46.06 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.|.++|.++|||||+++.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~ 21 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS 21 (170)
T ss_pred CeEEECCCCCCHHHHHHHHh
Confidence 58999999999999999975
No 349
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.77 E-value=0.13 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.2
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-|-
T Consensus 23 ~Ge-~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 23 KGK-MYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHh
Confidence 444 58999999999999988765
No 350
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.77 E-value=0.14 Score=47.52 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++|+|+.||||||+++-+-
T Consensus 27 ~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999977654
No 351
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.76 E-value=0.13 Score=49.37 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 352
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.76 E-value=0.13 Score=49.37 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999999988654
No 353
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.73 E-value=0.13 Score=49.01 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999987764
No 354
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.70 E-value=0.13 Score=49.65 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988764
No 355
>PRK08356 hypothetical protein; Provisional
Probab=91.70 E-value=0.17 Score=47.61 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
.-++|.|++||||||+.+.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999985
No 356
>PRK07560 elongation factor EF-2; Reviewed
Probab=91.70 E-value=0.43 Score=54.26 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=39.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|...-...=......++++|+|||..+-- ......++..+... +.|.+
T Consensus 90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~-----------~~~t~~~~~~~~~~----~~~~i----------- 143 (731)
T PRK07560 90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV-----------MPQTETVLRQALRE----RVKPV----------- 143 (731)
T ss_pred EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCC-----------CccHHHHHHHHHHc----CCCeE-----------
Confidence 78999997543222233456789999999966421 11233444443332 35678
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|...
T Consensus 144 -------v~iNK~D~~~ 153 (731)
T PRK07560 144 -------LFINKVDRLI 153 (731)
T ss_pred -------EEEECchhhc
Confidence 9999999763
No 357
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.69 E-value=0.13 Score=49.01 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988654
No 358
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.69 E-value=0.13 Score=48.61 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988664
No 359
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.68 E-value=0.13 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 360
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.65 E-value=0.14 Score=48.23 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||+++-+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988654
No 361
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=91.64 E-value=0.16 Score=47.57 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
++|.|+.+|||||++|++-++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999998754
No 362
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.64 E-value=0.16 Score=48.83 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.3
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
=+++|.|+.+|||||++|++-++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999998743
No 363
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.64 E-value=0.14 Score=47.41 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999988764
No 364
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.63 E-value=0.15 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=19.7
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
..|+|.|.+||||||+.+.+.-.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999987543
No 365
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.16 Score=53.20 Aligned_cols=42 Identities=26% Similarity=0.199 Sum_probs=32.2
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhcC----------CCCCHHHHhhhhhhH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIHG----------SGYSDEDKRGFIKLV 53 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~~----------~g~s~~E~~~~r~~I 53 (463)
++| =|.|+|..||||||++|-+-=+|. .+.+++.++.||.++
T Consensus 348 rGe-lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 348 RGE-LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred cCc-EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 444 378999999999999987765554 357788889998653
No 366
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.13 Score=49.73 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=29.5
Q ss_pred EEEECCCCCChhHHHHHHH--HhcCC-----------CCCHHHHhhhhhhHHHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR--IIHGS-----------GYSDEDKRGFIKLVYQNIFMAM 61 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr--ii~~~-----------g~s~~E~~~~r~~I~~Nii~~~ 61 (463)
+-+||+.|+||||++|++- +.... .+.++|+...|-++-+|.--+.
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laF 88 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAF 88 (259)
T ss_pred EEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCccccc
Confidence 5689999999999999863 11111 2445666666666666554443
No 367
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.61 E-value=0.14 Score=48.87 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-|-=+
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5889999999999998876533
No 368
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.61 E-value=0.14 Score=49.52 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999987754
No 369
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.60 E-value=0.14 Score=48.56 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999987653
No 370
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.60 E-value=0.14 Score=46.77 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||+++-+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 28 VHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988654
No 371
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.58 E-value=0.14 Score=49.46 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988765
No 372
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.58 E-value=0.14 Score=49.53 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988765
No 373
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.57 E-value=0.15 Score=46.78 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.++|+.||||||+++-+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988765
No 374
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=91.57 E-value=0.15 Score=48.49 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.3
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
+.++.+.|+.||||||+++.+-
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~ 22 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALT 22 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999998764
No 375
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.56 E-value=0.14 Score=49.47 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999988764
No 376
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.54 E-value=0.14 Score=50.76 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|+.||||||++|-|=
T Consensus 32 ~~~iiGPNGaGKSTLlK~iL 51 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAIL 51 (254)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988753
No 377
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=91.54 E-value=0.14 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-|-=+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999998876533
No 378
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.53 E-value=0.14 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=18.8
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-+-
T Consensus 29 ~G~-~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 29 EGE-FVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHh
Confidence 344 58899999999999987754
No 379
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.51 E-value=0.14 Score=48.94 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 33 TLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999987764
No 380
>KOG3886|consensus
Probab=91.51 E-value=0.19 Score=49.04 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=44.4
Q ss_pred EEEecCCccccccc-----cccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHH----HhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQRSERRK-----WIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKT----IITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr~eR~k-----W~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~----i~~~~~~~~~~il~~ 268 (463)
.+||.|||...-.. =-+-|.+|.++|||-|.+ .+.|+..+..|++ ++.+.- ...+.
T Consensus 56 nlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDve-----------s~e~~~D~~~yqk~Le~ll~~SP--~AkiF-- 120 (295)
T KOG3886|consen 56 NLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVE-----------SREMEKDFHYYQKCLEALLQNSP--EAKIF-- 120 (295)
T ss_pred ehhccCCcHHHHHHHHhhcchhhheeheeeeeeeecc-----------chhhhhhHHHHHHHHHHHHhcCC--cceEE--
Confidence 88999999765333 346799999999999976 2445555555544 332211 23444
Q ss_pred CCccccccccccccceeeecchhhhch
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
.++.|+|+.++
T Consensus 121 ----------------~l~hKmDLv~~ 131 (295)
T KOG3886|consen 121 ----------------CLLHKMDLVQE 131 (295)
T ss_pred ----------------EEEeechhccc
Confidence 78899998553
No 381
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.47 E-value=0.15 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=19.1
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
-++++|.+||||||+++.+--+.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999865433
No 382
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.46 E-value=0.15 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.3
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
+++.|.+||||||+.+.+.-.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999987644
No 383
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.44 E-value=0.14 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEECCCCCChhHHHHHHHHhcC
Q psy16468 17 DFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 17 LlLG~geSGKSTi~KQmrii~~ 38 (463)
.|+|++||||||++|-+-.++.
T Consensus 37 AlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 37 ALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred EEECCCCcCHHHHHHHHHhhcc
Confidence 5789999999999998876653
No 384
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.44 E-value=0.14 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.6
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
|||.|+.|+|||++++++--.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999987533
No 385
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.15 Score=46.90 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988653
No 386
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.15 Score=48.51 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.+.|+|+.||||||++|-+-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHh
Confidence 478999999999999988765
No 387
>COG1084 Predicted GTPase [General function prediction only]
Probab=91.39 E-value=0.38 Score=49.20 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=59.3
Q ss_pred eEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCc----ccccc----ccccccCc-ccEEEEEEeccchhhh
Q psy16468 164 IEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQ----RSERR----KWIHCFEN-VTSIIFLVALSEYDQI 234 (463)
Q Consensus 164 ~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGq----r~eR~----kW~~~f~~-v~~iiFvv~ls~ydq~ 234 (463)
..|.|+.+++.+=..+.+ +-.|.++|..|- -+||- +=+--... -.+|+|++|.|+.+
T Consensus 196 A~YPFTTK~i~vGhfe~~------------~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c-- 261 (346)
T COG1084 196 APYPFTTKGIHVGHFERG------------YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC-- 261 (346)
T ss_pred CCCCccccceeEeeeecC------------CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc--
Confidence 347777777655222222 224599999995 11221 11111222 35799999999764
Q ss_pred hccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhh-chhhhh
Q psy16468 235 LFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLF-SQYNVI 299 (463)
Q Consensus 235 ~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~-~eki~~ 299 (463)
.--+++-..||+++-. .|. .|++ +++||.|+. .+++..
T Consensus 262 ------gy~lE~Q~~L~~eIk~--~f~-~p~v------------------~V~nK~D~~~~e~~~~ 300 (346)
T COG1084 262 ------GYSLEEQISLLEEIKE--LFK-APIV------------------VVINKIDIADEEKLEE 300 (346)
T ss_pred ------CCCHHHHHHHHHHHHH--hcC-CCeE------------------EEEecccccchhHHHH
Confidence 2346677888998874 455 8999 999999987 455443
No 388
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.37 E-value=0.15 Score=49.86 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999988875
No 389
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.36 E-value=0.16 Score=47.37 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
|++.|.++|||||+.+++.-.
T Consensus 2 i~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998744
No 390
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.35 E-value=0.15 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.3
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-|-
T Consensus 28 ~G~-~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 28 PGE-TVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHh
Confidence 444 48999999999999988774
No 391
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.33 E-value=0.16 Score=47.16 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999977754
No 392
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.23 E-value=0.16 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-+-=+
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999998876533
No 393
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=91.23 E-value=0.15 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-+-=+
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999998876533
No 394
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.23 E-value=0.15 Score=49.04 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-+-=+
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999998887533
No 395
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.22 E-value=0.16 Score=47.47 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.3
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.+++.|+.||||||+++.+-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999998753
No 396
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=91.21 E-value=0.16 Score=49.11 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988765
No 397
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.21 E-value=0.16 Score=48.12 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=16.3
Q ss_pred EEEECCCCCChhHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQm 33 (463)
+++.|+.||||||+++.+
T Consensus 4 ilI~GptGSGKTTll~~l 21 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999863
No 398
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.19 E-value=0.17 Score=47.57 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988754
No 399
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.19 E-value=0.16 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-+-=+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999998876533
No 400
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.18 E-value=0.16 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=15.4
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
..--++|.|.+|+||||+++.+.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999999754
No 401
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.18 E-value=0.17 Score=46.67 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||+++-+-=+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999998876533
No 402
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=91.17 E-value=0.17 Score=45.38 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=41.7
Q ss_pred EEEecCCccc----ccccccc-----ccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQRS----ERRKWIH-----CFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr~----eR~kW~~-----~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.+||++|+.. ++..|.. +....++++||+|.++... -.+++...+++.+.. .+.+.|++
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~--------~~~~~~~~~~~~l~~--~~~~~pvi-- 117 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG--------YSLEEQLSLFEEIKP--LFKNKPVI-- 117 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc--------cchHHHHHHHHHHHh--hcCcCCeE--
Confidence 9999999842 2222211 1122578999999875321 123334445555532 23578999
Q ss_pred CCccccccccccccceeeecchhhhc
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 118 ----------------lv~NK~Dl~~ 127 (168)
T cd01897 118 ----------------VVLNKIDLLT 127 (168)
T ss_pred ----------------EEEEccccCc
Confidence 9999999854
No 403
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.16 E-value=0.16 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=20.8
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
++| -|.++|++||||||++|-+--+.
T Consensus 29 ~GE-~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 29 QGE-MVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCc-EEEEECCCCCcHHHHHHHHhccc
Confidence 444 58899999999999988876443
No 404
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.14 E-value=0.16 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988764
No 405
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=91.13 E-value=0.17 Score=46.57 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.1
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
|+|.|+|.+.+||||++.++=
T Consensus 1 i~ialvG~PNvGKStLfN~Lt 21 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALT 21 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998853
No 406
>PRK13947 shikimate kinase; Provisional
Probab=91.12 E-value=0.17 Score=46.04 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
+|+|+|.+||||||+.+.+--
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998753
No 407
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.12 E-value=0.17 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-+-=+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999998876533
No 408
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.10 E-value=0.16 Score=48.03 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988765
No 409
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.09 E-value=0.16 Score=49.23 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988764
No 410
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.05 E-value=0.17 Score=47.84 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999988764
No 411
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=91.04 E-value=0.16 Score=48.88 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~ 46 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIA 46 (232)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988664
No 412
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=91.04 E-value=0.17 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999988764
No 413
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=91.04 E-value=0.17 Score=50.23 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALM 54 (272)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988764
No 414
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=91.02 E-value=0.17 Score=48.99 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988764
No 415
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.01 E-value=0.18 Score=45.22 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.++|+.||||||+++-+-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~ 47 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIA 47 (144)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 67899999999999987653
No 416
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=91.00 E-value=0.2 Score=44.53 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+..++-+++++|.+++||||++.++.
T Consensus 79 a~~~~~~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 79 ALKENATIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred ecCCCcEEEEECCCCCCHHHHHHHHh
Confidence 33444589999999999999988874
No 417
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.99 E-value=0.17 Score=49.72 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 418
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.96 E-value=0.18 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|..||||||++|-+-=+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999998776533
No 419
>PRK04182 cytidylate kinase; Provisional
Probab=90.95 E-value=0.19 Score=45.87 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.|+|.|..||||||+.+++-
T Consensus 2 ~I~i~G~~GsGKstia~~la 21 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLA 21 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 420
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.94 E-value=0.18 Score=46.33 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 30 ~~~l~G~nGsGKstLl~~i~ 49 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLL 49 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999987764
No 421
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=90.93 E-value=0.16 Score=57.10 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
++.++|..||||||++|-+-=+|.
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999998765554
No 422
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.93 E-value=0.16 Score=51.45 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=16.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|||++||||||+++-|-
T Consensus 30 ~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999966543
No 423
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.92 E-value=0.18 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.1
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-+-
T Consensus 26 ~Ge-~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 26 SGE-LLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHh
Confidence 344 68999999999999988764
No 424
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.92 E-value=1.2 Score=38.78 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=25.1
Q ss_pred EEEecCCcccccc--------ccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERR--------KWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~--------kW~~~f~~v~~iiFvv~ls~y 231 (463)
.++|.+|...... .+.+.+.+++.++||+|.++.
T Consensus 54 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 54 IFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP 95 (168)
T ss_pred EEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc
Confidence 8899999753322 234557789999999998865
No 425
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.91 E-value=0.17 Score=48.91 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||+++-+-
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~ 50 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLE 50 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHh
Confidence 68999999999999988765
No 426
>PRK10908 cell division protein FtsE; Provisional
Probab=90.89 E-value=0.19 Score=48.13 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 427
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.87 E-value=0.18 Score=48.58 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIP 49 (234)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 428
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=90.87 E-value=0.18 Score=48.75 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988764
No 429
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.86 E-value=0.19 Score=45.35 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.2
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
-.++|+|+.||||||+++.+--+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999998886533
No 430
>PRK01184 hypothetical protein; Provisional
Probab=90.85 E-value=0.2 Score=46.32 Aligned_cols=20 Identities=40% Similarity=0.424 Sum_probs=16.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.|+|.|++||||||+.+..+
T Consensus 3 ~i~l~G~~GsGKsT~a~~~~ 22 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKIAR 22 (184)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999976433
No 431
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.84 E-value=0.18 Score=47.95 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~ 45 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIA 45 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988765
No 432
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=90.84 E-value=0.19 Score=48.76 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~ 50 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVV 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999987765
No 433
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.83 E-value=0.17 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-++|.|++||||||+++++--.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999987533
No 434
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=90.82 E-value=0.18 Score=48.46 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVA 54 (225)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988654
No 435
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.81 E-value=0.18 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=19.3
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-|-
T Consensus 28 ~Ge-~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 28 EKS-VVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHh
Confidence 444 48999999999999988874
No 436
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.81 E-value=0.19 Score=49.13 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLA 50 (253)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988654
No 437
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=90.80 E-value=0.18 Score=48.88 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999987764
No 438
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.79 E-value=0.19 Score=49.72 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988654
No 439
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=90.78 E-value=0.18 Score=47.97 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||+++-+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988765
No 440
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.78 E-value=0.18 Score=49.99 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLS 48 (271)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68899999999999988654
No 441
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.75 E-value=0.2 Score=50.59 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=21.5
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
..+.=|-+.|+.||||||+++.|.-+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344567899999999999999876443
No 442
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.73 E-value=0.19 Score=48.12 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~ 55 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLY 55 (224)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988664
No 443
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=90.69 E-value=0.18 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.0
Q ss_pred eEEEECCCCCChhHHHHHHH-HhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMR-IIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr-ii~~ 38 (463)
.+.|+|+.||||||+++-+. .+++
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~l~g 54 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYG 54 (213)
T ss_pred EEEEECCCCCCHHHHHHHheeeEec
Confidence 58899999999999999886 3443
No 444
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=90.66 E-value=0.2 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
.+.|+|+.||||||++|-|-=
T Consensus 37 ~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999887653
No 445
>PLN02459 probable adenylate kinase
Probab=90.65 E-value=0.32 Score=48.43 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=22.6
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
...++++|+|++||||||+.+.+---++
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999988764443
No 446
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.65 E-value=0.21 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.1
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
-+++++|++||||||++|-+--+|.
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 3899999999999999988755554
No 447
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=90.63 E-value=0.19 Score=48.57 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58899999999999988764
No 448
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.62 E-value=0.19 Score=48.55 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999977654
No 449
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.62 E-value=0.19 Score=48.82 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999987654
No 450
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=90.62 E-value=0.2 Score=49.51 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~ 58 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLL 58 (265)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988664
No 451
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.60 E-value=0.2 Score=47.29 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999987654
No 452
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.60 E-value=0.24 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=19.6
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+..=++|.|++||||||+.+++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALL 25 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44458899999999999999985
No 453
>PLN02674 adenylate kinase
Probab=90.57 E-value=0.25 Score=48.72 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=21.8
Q ss_pred ceeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
..+|+|+|++||||+|+.+.+.--|+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999998765443
No 454
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=90.57 E-value=0.19 Score=48.87 Aligned_cols=20 Identities=25% Similarity=0.600 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988765
No 455
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.50 E-value=0.2 Score=47.25 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78899999999999988754
No 456
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=90.49 E-value=0.19 Score=48.99 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLT 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999977654
No 457
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.47 E-value=0.2 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||+++-+-=+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 7889999999999998876533
No 458
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=90.46 E-value=0.17 Score=45.39 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.9
Q ss_pred EECCCCCChhHHHHHHHHhc
Q psy16468 18 FVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 18 lLG~geSGKSTi~KQmrii~ 37 (463)
|+|++||||||+.+.+---+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 69999999999999876433
No 459
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.45 E-value=0.23 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEECCCCCChhHHHHHHHHhcC
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~~ 38 (463)
|-|-|+++|||||+.+++.-+.+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999875544
No 460
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=90.44 E-value=0.25 Score=55.72 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
++.++|.+||||||++|-+--+|.
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 899999999999999998765554
No 461
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=90.43 E-value=0.23 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.2
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
++.++|++||||||++|-+--++.
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 899999999999999998766654
No 462
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.43 E-value=0.2 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.679 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~ 68 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSIN 68 (268)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999988774
No 463
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=90.43 E-value=0.2 Score=49.62 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999987654
No 464
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=90.42 E-value=0.39 Score=41.94 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=25.0
Q ss_pred EEEecCCccccccccc----cccCcccEEEEEEeccchh
Q psy16468 198 TMVDVGGQRSERRKWI----HCFENVTSIIFLVALSEYD 232 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~----~~f~~v~~iiFvv~ls~yd 232 (463)
.++|++|+......|. ..+.+++++|+|+|+++-.
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~ 76 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPE 76 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCC
Confidence 5689999844333442 2467999999999987554
No 465
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=90.42 E-value=0.2 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-+-=+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999998876533
No 466
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=90.41 E-value=0.2 Score=48.76 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999988764
No 467
>KOG0080|consensus
Probab=90.39 E-value=1 Score=41.67 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=50.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||..||..-|..-..||.+..+||.|-|+..-|.. -.|+-=++..+.-+.++ ++-.+
T Consensus 63 aiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf-------~kLd~W~~Eld~Ystn~---diikm----------- 121 (209)
T KOG0080|consen 63 AIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTF-------VKLDIWLKELDLYSTNP---DIIKM----------- 121 (209)
T ss_pred EEEeccchHhhhccCHhHhccCceeEEEEEccchhhH-------HhHHHHHHHHHhhcCCc---cHhHh-----------
Confidence 8899999999999999999999999999998754421 22333333444444444 33444
Q ss_pred cccccceeeecchhhhchh
Q psy16468 278 IHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek 296 (463)
++.||+|.-+++
T Consensus 122 -------lVgNKiDkes~R 133 (209)
T KOG0080|consen 122 -------LVGNKIDKESER 133 (209)
T ss_pred -------hhcccccchhcc
Confidence 899999966443
No 468
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.39 E-value=0.21 Score=49.05 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999987654
No 469
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=90.37 E-value=0.22 Score=45.84 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.3
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
|.+.|..||||||+.+.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~ 21 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLA 21 (200)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999999875
No 470
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.34 E-value=0.21 Score=48.70 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988765
No 471
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.34 E-value=0.22 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.0
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
..-|++.|.+||||||+.+.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~ 28 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALY 28 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999999998864
No 472
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=90.32 E-value=0.21 Score=50.39 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988764
No 473
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=90.32 E-value=0.21 Score=47.53 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
-++++|+.||||||+++.+..
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~ 44 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998763
No 474
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=90.31 E-value=0.24 Score=48.06 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCCcceeEEEECCCCCChhHHHHHH
Q psy16468 8 SCPALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 8 ~~~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
..++.+.++|+.|.+|+||||+++++
T Consensus 7 ~~~~~~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 7 NIKRIPNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHhc
Confidence 33555678999999999999999987
No 475
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.29 E-value=0.23 Score=43.60 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=18.1
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
|++.|..||||||+.+.+---
T Consensus 2 I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999987643
No 476
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.28 E-value=0.22 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.|+|+.||||||++|-+-=++
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999987765443
No 477
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=90.28 E-value=0.22 Score=48.64 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILM 47 (252)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999988764
No 478
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=90.26 E-value=0.25 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
++.++|+.||||||++|-+--+|.
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999988765553
No 479
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=90.25 E-value=0.22 Score=49.17 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-|-
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68899999999999988754
No 480
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=90.25 E-value=0.26 Score=45.91 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.6
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
++|+|++||||+|+.++|.--
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999998633
No 481
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.24 E-value=0.21 Score=50.00 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999988764
No 482
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=90.24 E-value=0.21 Score=50.42 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|.|-
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988765
No 483
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.24 E-value=0.21 Score=49.09 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988765
No 484
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.24 E-value=0.21 Score=48.71 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988765
No 485
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=90.23 E-value=0.2 Score=52.94 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=26.8
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhcCCCC
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIHGSGY 41 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~ 41 (463)
.+...-+|+|+|+++|||||+++++--.++..+
T Consensus 215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 215 RPFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred hhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 345667899999999999999999887665543
No 486
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.23 E-value=0.21 Score=48.98 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=19.2
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-+-
T Consensus 37 ~Ge-~~~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 37 ENE-VTAIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHH
Confidence 444 58999999999999988765
No 487
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.23 E-value=0.22 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|..||||||++|-+-=+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999998877533
No 488
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.19 E-value=0.23 Score=45.01 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=17.4
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
+.++|.+||||||+.+++.
T Consensus 2 i~~~G~~GsGKTt~~~~l~ 20 (148)
T cd03114 2 IGITGVPGAGKSTLIDALI 20 (148)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999875
No 489
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.18 E-value=0.22 Score=48.66 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=20.8
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.++ .+.|+|..||||||++|-|-=++
T Consensus 29 ~Ge-~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENS-VTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHhcc
Confidence 444 58999999999999988876443
No 490
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=90.17 E-value=0.23 Score=48.26 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLA 48 (248)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999977643
No 491
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.14 E-value=0.22 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.|+|+.||||||++|-+-=+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999998876533
No 492
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=90.14 E-value=0.23 Score=47.71 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~ 27 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAIL 27 (223)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988765
No 493
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=90.13 E-value=0.23 Score=47.57 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||+++-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988755
No 494
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=90.12 E-value=0.23 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
++.++|+.||||||++|-|-=+|.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999988765553
No 495
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=90.11 E-value=0.23 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.1
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-+-
T Consensus 47 ~Ge-~~~i~G~nGsGKSTLl~~l~ 69 (224)
T cd03220 47 RGE-RIGLIGRNGAGKSTLLRLLA 69 (224)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHh
Confidence 444 58999999999999988764
No 496
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.10 E-value=0.22 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=19.6
Q ss_pred CcceeEEEECCCCCChhHHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
.++ .+.|+|+.||||||++|-|-=
T Consensus 37 ~Ge-~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 37 KNS-VTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhc
Confidence 344 488999999999999888753
No 497
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=90.09 E-value=0.23 Score=50.44 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|.+-
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~ 54 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLN 54 (305)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 78999999999999987765
No 498
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=90.09 E-value=0.24 Score=46.72 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|..||||||++|-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988654
No 499
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=90.08 E-value=0.22 Score=49.38 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~ 71 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLN 71 (271)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999988875
No 500
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.07 E-value=0.23 Score=47.33 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~ 48 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999977654
Done!