Query psy16468
Match_columns 463
No_of_seqs 341 out of 2171
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:06:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 100.0 8.2E-75 2.8E-79 586.9 28.4 299 9-350 3-302 (327)
2 4fid_A G protein alpha subunit 100.0 5.8E-71 2E-75 560.9 23.7 293 10-350 2-312 (340)
3 1cip_A Protein (guanine nucleo 100.0 5.9E-68 2E-72 542.6 26.3 298 8-349 27-327 (353)
4 1zcb_A G alpha I/13; GTP-bindi 100.0 5.1E-66 1.7E-70 530.0 26.1 296 10-349 30-336 (362)
5 1azs_C GS-alpha; complex (lyas 100.0 5E-66 1.7E-70 535.3 25.0 302 8-350 35-369 (402)
6 2xtz_A Guanine nucleotide-bind 100.0 6.3E-62 2.2E-66 498.1 23.7 297 9-348 5-327 (354)
7 3ohm_A Guanine nucleotide-bind 99.9 2.2E-25 7.5E-30 225.3 2.9 182 248-459 40-267 (327)
8 4fid_A G protein alpha subunit 99.9 1.8E-24 6.3E-29 219.5 1.7 181 248-462 38-264 (340)
9 1zcb_A G alpha I/13; GTP-bindi 99.9 1.1E-22 3.8E-27 208.3 8.3 116 336-458 139-300 (362)
10 1cip_A Protein (guanine nucleo 99.8 1.4E-21 4.7E-26 199.6 8.2 185 248-461 65-295 (353)
11 1azs_C GS-alpha; complex (lyas 99.8 1.4E-20 4.8E-25 194.9 8.9 114 336-457 155-317 (402)
12 2xtz_A Guanine nucleotide-bind 99.8 6.4E-20 2.2E-24 187.3 5.5 114 336-456 115-282 (354)
13 1upt_A ARL1, ADP-ribosylation 99.3 6.8E-11 2.3E-15 104.9 15.1 105 198-330 54-167 (171)
14 2x77_A ADP-ribosylation factor 99.2 1.6E-10 5.5E-15 105.0 14.3 105 198-330 69-182 (189)
15 1fzq_A ADP-ribosylation factor 99.2 7.3E-11 2.5E-15 107.3 10.8 70 198-295 63-132 (181)
16 2h57_A ADP-ribosylation factor 99.2 1.1E-10 3.8E-15 106.4 11.7 86 159-294 53-140 (190)
17 1ksh_A ARF-like protein 2; sma 99.2 2.4E-10 8.1E-15 103.5 13.8 105 198-330 65-178 (186)
18 1m2o_B GTP-binding protein SAR 99.2 2.5E-10 8.6E-15 104.7 13.9 69 198-294 70-138 (190)
19 1r8s_A ADP-ribosylation factor 99.2 3E-10 1E-14 100.2 13.1 105 198-330 47-160 (164)
20 2h17_A ADP-ribosylation factor 99.2 2.5E-10 8.4E-15 103.4 12.3 69 198-294 68-136 (181)
21 1f6b_A SAR1; gtpases, N-termin 99.1 1.8E-10 6.3E-15 106.4 11.1 69 198-294 72-140 (198)
22 2b6h_A ADP-ribosylation factor 99.1 2.8E-10 9.5E-15 104.6 12.1 105 198-330 76-189 (192)
23 1zd9_A ADP-ribosylation factor 99.1 4.2E-10 1.4E-14 102.6 13.1 105 198-330 70-183 (188)
24 1moz_A ARL1, ADP-ribosylation 99.1 1.4E-10 4.7E-15 104.4 9.4 69 198-294 65-133 (183)
25 4bas_A ADP-ribosylation factor 99.1 2.9E-10 9.8E-15 103.7 11.4 105 198-330 66-187 (199)
26 1zj6_A ADP-ribosylation factor 99.1 8.5E-10 2.9E-14 100.2 14.1 105 198-330 63-176 (187)
27 3lvq_E ARF-GAP with SH3 domain 99.1 1.7E-09 5.9E-14 114.1 16.3 122 159-330 352-482 (497)
28 1z2a_A RAS-related protein RAB 99.0 2.1E-09 7.2E-14 94.7 13.5 68 198-295 57-124 (168)
29 1c1y_A RAS-related protein RAP 99.0 6.4E-10 2.2E-14 97.9 8.3 70 198-295 54-123 (167)
30 1x3s_A RAS-related protein RAB 99.0 1.9E-09 6.5E-14 97.7 10.6 105 198-330 67-176 (195)
31 1ky3_A GTP-binding protein YPT 99.0 4.4E-09 1.5E-13 93.9 12.6 72 198-294 61-132 (182)
32 1wms_A RAB-9, RAB9, RAS-relate 99.0 5.4E-09 1.9E-13 93.2 12.8 108 198-330 59-172 (177)
33 3oes_A GTPase rhebl1; small GT 99.0 4.4E-09 1.5E-13 96.8 12.5 105 198-330 75-185 (201)
34 2efe_B Small GTP-binding prote 99.0 4.7E-09 1.6E-13 93.9 12.2 68 198-294 64-131 (181)
35 3t1o_A Gliding protein MGLA; G 99.0 2E-09 6.8E-14 97.5 9.7 108 198-330 77-190 (198)
36 2a9k_A RAS-related protein RAL 99.0 4.4E-09 1.5E-13 94.3 11.8 105 198-330 69-179 (187)
37 1u8z_A RAS-related protein RAL 99.0 1.8E-09 6.3E-14 94.7 9.1 70 198-295 55-124 (168)
38 1kao_A RAP2A; GTP-binding prot 99.0 4.1E-09 1.4E-13 92.4 11.3 70 198-295 54-123 (167)
39 2bme_A RAB4A, RAS-related prot 98.9 5.7E-09 1.9E-13 94.0 12.2 68 198-294 62-129 (186)
40 4dsu_A GTPase KRAS, isoform 2B 98.9 6.3E-09 2.1E-13 93.6 12.0 105 198-330 55-164 (189)
41 2bov_A RAla, RAS-related prote 98.9 2.2E-09 7.6E-14 98.3 8.8 105 198-330 65-175 (206)
42 2o52_A RAS-related protein RAB 98.9 4.2E-09 1.4E-13 97.1 10.3 69 198-295 77-145 (200)
43 1vg8_A RAS-related protein RAB 98.9 2.4E-08 8.1E-13 91.6 15.3 108 198-330 60-173 (207)
44 2q3h_A RAS homolog gene family 98.9 9.7E-09 3.3E-13 94.0 12.6 68 198-295 71-139 (201)
45 1ek0_A Protein (GTP-binding pr 98.9 1.4E-08 4.7E-13 89.4 12.7 69 198-295 55-123 (170)
46 2fn4_A P23, RAS-related protei 98.9 1.1E-08 3.6E-13 91.3 11.9 105 198-330 60-170 (181)
47 3t5g_A GTP-binding protein RHE 98.9 1E-08 3.4E-13 92.1 11.8 105 198-330 57-167 (181)
48 3tkl_A RAS-related protein RAB 98.9 1.1E-08 3.9E-13 92.8 11.9 104 198-330 68-177 (196)
49 1z0f_A RAB14, member RAS oncog 98.9 6.5E-09 2.2E-13 92.5 10.0 69 198-295 67-135 (179)
50 2gco_A H9, RHO-related GTP-bin 98.9 1.6E-08 5.6E-13 93.1 13.0 69 198-295 76-144 (201)
51 1r2q_A RAS-related protein RAB 98.9 1.4E-08 4.9E-13 89.3 12.0 69 198-295 58-126 (170)
52 3o47_A ADP-ribosylation factor 98.9 5.5E-09 1.9E-13 105.1 10.2 122 159-330 195-325 (329)
53 1mh1_A RAC1; GTP-binding, GTPa 98.9 2.8E-08 9.6E-13 89.1 13.8 68 198-295 56-124 (186)
54 3tw8_B RAS-related protein RAB 98.9 2.2E-08 7.6E-13 89.2 12.9 103 198-330 61-169 (181)
55 3con_A GTPase NRAS; structural 98.8 9.5E-09 3.3E-13 93.1 10.2 104 198-330 72-181 (190)
56 3bc1_A RAS-related protein RAB 98.8 1E-08 3.5E-13 92.3 10.0 70 198-295 73-142 (195)
57 4gzl_A RAS-related C3 botulinu 98.8 3.9E-08 1.3E-12 91.0 13.8 70 198-296 81-150 (204)
58 2atv_A RERG, RAS-like estrogen 98.8 2E-08 6.7E-13 91.9 11.5 104 198-330 79-189 (196)
59 3reg_A RHO-like small GTPase; 98.8 2.9E-08 9.9E-13 90.5 12.5 104 198-330 74-186 (194)
60 1z08_A RAS-related protein RAB 98.8 4.6E-08 1.6E-12 86.3 13.5 69 198-295 58-126 (170)
61 2ce2_X GTPase HRAS; signaling 98.8 1.4E-08 4.7E-13 88.7 9.8 69 198-294 54-122 (166)
62 2fh5_B SR-beta, signal recogni 98.8 1.8E-08 6E-13 93.4 10.9 71 198-295 57-130 (214)
63 2gf9_A RAS-related protein RAB 98.8 3E-08 1E-12 90.0 12.2 69 198-295 74-142 (189)
64 2g6b_A RAS-related protein RAB 98.8 1E-07 3.5E-12 85.0 15.2 104 198-330 63-172 (180)
65 2fv8_A H6, RHO-related GTP-bin 98.8 2.9E-08 9.9E-13 91.8 11.9 69 198-295 76-144 (207)
66 2hxs_A RAB-26, RAS-related pro 98.8 2.4E-08 8.2E-13 89.0 11.0 34 198-231 59-92 (178)
67 2bcg_Y Protein YP2, GTP-bindin 98.8 1.4E-07 4.7E-12 86.8 16.4 104 198-330 60-169 (206)
68 2a5j_A RAS-related protein RAB 98.8 3.8E-08 1.3E-12 89.6 12.5 68 198-294 73-140 (191)
69 3q3j_B RHO-related GTP-binding 98.8 4.6E-08 1.6E-12 91.4 13.3 69 198-295 78-146 (214)
70 1g16_A RAS-related protein SEC 98.8 3.1E-08 1.1E-12 87.3 11.4 104 198-330 55-163 (170)
71 2yc2_C IFT27, small RAB-relate 98.8 6.6E-09 2.3E-13 95.1 7.3 69 198-294 76-146 (208)
72 1z0j_A RAB-22, RAS-related pro 98.8 2.7E-08 9.2E-13 87.7 10.9 68 198-294 58-125 (170)
73 2f7s_A C25KG, RAS-related prot 98.8 1.2E-08 4E-13 94.8 8.6 70 198-295 87-156 (217)
74 2erx_A GTP-binding protein DI- 98.8 1.3E-08 4.4E-13 89.8 8.3 70 198-295 54-124 (172)
75 2hup_A RAS-related protein RAB 98.8 6.3E-08 2.2E-12 89.3 13.1 104 198-330 81-191 (201)
76 3kkq_A RAS-related protein M-R 98.8 2.7E-08 9.1E-13 89.4 10.3 69 198-294 69-137 (183)
77 2il1_A RAB12; G-protein, GDP, 98.8 3E-08 1E-12 90.6 10.8 69 198-295 78-146 (192)
78 2oil_A CATX-8, RAS-related pro 98.8 7.8E-08 2.7E-12 87.4 13.2 69 198-295 77-145 (193)
79 3dz8_A RAS-related protein RAB 98.8 6.4E-09 2.2E-13 94.8 5.7 69 198-295 75-143 (191)
80 1zbd_A Rabphilin-3A; G protein 98.7 3.6E-08 1.2E-12 90.4 10.3 69 198-295 60-128 (203)
81 1z06_A RAS-related protein RAB 98.7 5.7E-08 1.9E-12 88.1 11.5 70 198-295 72-142 (189)
82 3bwd_D RAC-like GTP-binding pr 98.7 7.8E-08 2.7E-12 86.0 12.1 70 198-296 59-128 (182)
83 2j0v_A RAC-like GTP-binding pr 98.7 9E-08 3.1E-12 88.4 12.8 103 198-330 60-178 (212)
84 1m7b_A RND3/RHOE small GTP-bin 98.7 5.1E-08 1.8E-12 88.2 10.9 69 198-295 58-126 (184)
85 2gf0_A GTP-binding protein DI- 98.7 4.3E-08 1.5E-12 89.1 10.4 106 198-330 59-169 (199)
86 3cph_A RAS-related protein SEC 98.7 7.3E-08 2.5E-12 88.7 11.8 104 198-330 72-180 (213)
87 3cpj_B GTP-binding protein YPT 98.7 1.1E-07 3.6E-12 89.1 13.0 104 198-330 65-174 (223)
88 2lkc_A Translation initiation 98.7 5.6E-08 1.9E-12 86.6 10.6 64 198-294 58-121 (178)
89 2y8e_A RAB-protein 6, GH09086P 98.7 8.3E-08 2.8E-12 85.2 11.4 69 198-295 66-134 (179)
90 2atx_A Small GTP binding prote 98.7 2.5E-07 8.4E-12 84.1 14.4 68 198-295 69-137 (194)
91 2fu5_C RAS-related protein RAB 98.7 4.3E-08 1.5E-12 88.0 9.2 68 198-294 60-127 (183)
92 2j1l_A RHO-related GTP-binding 98.7 5.7E-08 2E-12 90.5 10.2 68 198-295 85-153 (214)
93 3ihw_A Centg3; RAS, centaurin, 98.7 2.1E-07 7.1E-12 84.7 13.6 63 198-293 70-132 (184)
94 4dkx_A RAS-related protein RAB 98.7 4.6E-08 1.6E-12 92.6 9.4 69 198-295 65-133 (216)
95 3q85_A GTP-binding protein REM 98.7 6.5E-08 2.2E-12 85.4 9.8 69 198-294 54-123 (169)
96 3gj0_A GTP-binding nuclear pro 98.7 6.1E-08 2.1E-12 90.4 9.9 102 198-330 67-173 (221)
97 2ew1_A RAS-related protein RAB 98.7 2.1E-07 7E-12 86.4 13.1 68 198-294 78-145 (201)
98 3l0i_B RAS-related protein RAB 98.7 2.2E-08 7.6E-13 91.9 6.4 69 198-295 85-153 (199)
99 2fg5_A RAB-22B, RAS-related pr 98.7 2.2E-07 7.5E-12 84.7 12.8 68 198-294 75-142 (192)
100 2dyk_A GTP-binding protein; GT 98.7 1.6E-07 5.4E-12 82.1 11.4 99 198-329 52-159 (161)
101 2nzj_A GTP-binding protein REM 98.6 1.8E-07 6.3E-12 82.8 11.1 70 198-295 55-126 (175)
102 4djt_A GTP-binding nuclear pro 98.6 1.1E-07 3.8E-12 88.2 10.0 104 198-330 64-173 (218)
103 3llu_A RAS-related GTP-binding 98.6 1.5E-07 5E-12 86.3 10.0 68 198-295 72-144 (196)
104 1gwn_A RHO-related GTP-binding 98.6 1.8E-07 6.1E-12 87.0 10.7 68 198-295 79-147 (205)
105 3q72_A GTP-binding protein RAD 98.6 1.3E-07 4.4E-12 83.2 9.2 70 198-295 52-121 (166)
106 3c5c_A RAS-like protein 12; GD 98.6 1.5E-07 5.2E-12 85.6 9.4 68 198-294 72-141 (187)
107 2ged_A SR-beta, signal recogni 98.6 5.1E-08 1.7E-12 88.5 5.8 71 198-295 94-171 (193)
108 3r7w_B Gtpase2, GTP-binding pr 98.5 7.6E-08 2.6E-12 97.0 6.9 68 198-295 49-121 (331)
109 2p5s_A RAS and EF-hand domain 98.5 2.4E-07 8.2E-12 84.9 9.6 68 198-294 80-147 (199)
110 3clv_A RAB5 protein, putative; 98.5 6.4E-07 2.2E-11 80.8 11.9 64 197-291 95-158 (208)
111 2qu8_A Putative nucleolar GTP- 98.5 6.6E-07 2.3E-11 84.1 12.4 70 198-295 79-157 (228)
112 3r7w_A Gtpase1, GTP-binding pr 98.5 3.7E-07 1.3E-11 90.7 10.8 70 198-294 55-129 (307)
113 1nrj_B SR-beta, signal recogni 98.5 8.8E-08 3E-12 88.9 5.2 71 198-295 58-135 (218)
114 2wkq_A NPH1-1, RAS-related C3 98.5 1.7E-06 5.8E-11 85.1 14.6 68 198-295 206-274 (332)
115 3l82_B F-box only protein 4; T 98.5 5.3E-08 1.8E-12 92.1 3.1 64 200-292 107-175 (227)
116 3cbq_A GTP-binding protein REM 98.4 8.2E-07 2.8E-11 81.6 10.6 70 198-295 75-145 (195)
117 3th5_A RAS-related C3 botulinu 97.8 2.4E-08 8.3E-13 91.9 0.0 33 198-230 81-113 (204)
118 2zej_A Dardarin, leucine-rich 98.4 5.6E-07 1.9E-11 81.5 9.0 69 198-295 59-127 (184)
119 2iwr_A Centaurin gamma 1; ANK 98.3 1.8E-06 6.3E-11 76.9 9.0 62 198-293 57-121 (178)
120 4dcu_A GTP-binding protein ENG 98.3 1.6E-06 5.4E-11 90.8 9.1 100 198-330 74-183 (456)
121 2g3y_A GTP-binding protein GEM 98.3 5.7E-06 1.9E-10 77.7 11.8 69 198-294 90-159 (211)
122 3l2o_B F-box only protein 4; s 98.2 1.5E-07 5.3E-12 92.9 0.2 64 201-293 193-261 (312)
123 3pqc_A Probable GTP-binding pr 98.2 7.3E-06 2.5E-10 73.6 11.1 24 10-33 20-43 (195)
124 2f9l_A RAB11B, member RAS onco 98.2 1.2E-05 4.1E-10 73.6 12.5 68 198-294 57-124 (199)
125 2wjg_A FEOB, ferrous iron tran 98.2 1E-05 3.4E-10 72.7 10.8 63 198-295 57-127 (188)
126 3dpu_A RAB family protein; roc 98.1 2.6E-06 9.1E-11 90.8 7.5 100 198-330 101-206 (535)
127 3k53_A Ferrous iron transport 98.1 9E-06 3.1E-10 78.8 10.7 99 198-330 53-164 (271)
128 1oix_A RAS-related protein RAB 98.1 2.3E-05 7.8E-10 71.5 12.8 34 198-231 81-114 (191)
129 2cjw_A GTP-binding protein GEM 98.1 1.1E-05 3.8E-10 73.7 10.7 69 198-294 59-128 (192)
130 1svi_A GTP-binding protein YSX 98.1 9.7E-06 3.3E-10 73.2 10.1 23 11-33 21-43 (195)
131 3lxx_A GTPase IMAP family memb 98.1 1.1E-05 3.6E-10 76.5 10.7 69 198-295 81-160 (239)
132 3a1s_A Iron(II) transport prot 98.1 1.1E-05 3.7E-10 78.1 10.7 98 198-330 55-165 (258)
133 2wji_A Ferrous iron transport 98.1 2.2E-05 7.5E-10 69.6 11.7 63 198-295 53-123 (165)
134 2gj8_A MNME, tRNA modification 98.1 2.9E-05 1E-09 69.5 12.5 101 198-330 55-164 (172)
135 3lxw_A GTPase IMAP family memb 98.1 1.7E-05 5.8E-10 76.0 11.3 29 5-33 13-41 (247)
136 2cxx_A Probable GTP-binding pr 98.0 3.5E-06 1.2E-10 75.6 5.3 111 198-330 47-182 (190)
137 3gee_A MNME, tRNA modification 98.0 1.7E-05 5.7E-10 83.8 11.1 103 198-331 284-397 (476)
138 3i8s_A Ferrous iron transport 98.0 2E-05 6.7E-10 76.9 10.2 22 12-33 2-23 (274)
139 4dhe_A Probable GTP-binding pr 98.0 9.4E-06 3.2E-10 75.2 7.5 23 11-33 27-49 (223)
140 2xtp_A GTPase IMAP family memb 98.0 5.4E-05 1.8E-09 72.4 12.2 24 10-33 19-42 (260)
141 3def_A T7I23.11 protein; chlor 97.9 5.4E-05 1.9E-09 72.9 11.8 24 11-34 34-57 (262)
142 3iby_A Ferrous iron transport 97.9 6.4E-05 2.2E-09 72.6 12.1 64 198-296 51-126 (256)
143 3c5h_A Glucocorticoid receptor 97.9 4.4E-05 1.5E-09 73.3 10.6 28 7-34 13-49 (255)
144 3iev_A GTP-binding protein ERA 97.8 0.00026 8.7E-09 70.1 14.5 101 198-330 62-180 (308)
145 3j2k_7 ERF3, eukaryotic polype 97.8 0.00013 4.3E-09 76.1 11.9 34 198-231 98-131 (439)
146 1wf3_A GTP-binding protein; GT 97.7 0.00019 6.6E-09 71.0 12.0 102 198-330 58-171 (301)
147 3b1v_A Ferrous iron uptake tra 97.7 0.00013 4.5E-09 71.2 10.6 95 198-330 52-162 (272)
148 3t5d_A Septin-7; GTP-binding p 97.7 0.00013 4.3E-09 70.8 9.6 23 11-33 6-28 (274)
149 3p26_A Elongation factor 1 alp 97.7 0.00028 9.7E-09 74.2 12.8 34 198-231 114-147 (483)
150 2elf_A Protein translation elo 97.7 7.1E-05 2.4E-09 76.4 7.7 31 198-229 63-93 (370)
151 2e87_A Hypothetical protein PH 97.7 0.00022 7.5E-09 72.0 11.3 24 10-33 164-187 (357)
152 1jny_A EF-1-alpha, elongation 97.6 0.00021 7.3E-09 74.2 11.3 33 198-230 87-119 (435)
153 1zun_B Sulfate adenylate trans 97.6 0.00041 1.4E-08 72.0 13.3 33 198-230 107-139 (434)
154 1f60_A Elongation factor EEF1A 97.5 0.00076 2.6E-08 70.6 13.6 34 198-231 88-121 (458)
155 1dar_A EF-G, elongation factor 97.5 0.00032 1.1E-08 77.2 10.3 65 198-295 80-144 (691)
156 1r5b_A Eukaryotic peptide chai 97.5 0.00044 1.5E-08 72.5 10.9 34 198-231 124-157 (467)
157 1ega_A Protein (GTP-binding pr 97.5 0.0016 5.5E-08 64.2 14.4 99 198-330 59-173 (301)
158 2h5e_A Peptide chain release f 97.5 0.00036 1.2E-08 74.5 10.1 64 198-294 85-148 (529)
159 3sjy_A Translation initiation 97.4 0.00024 8.4E-09 72.9 8.2 101 198-330 78-190 (403)
160 3izq_1 HBS1P, elongation facto 97.4 0.00038 1.3E-08 75.5 9.9 33 198-230 248-280 (611)
161 1xzp_A Probable tRNA modificat 97.4 0.00018 6E-09 76.0 7.0 62 198-294 294-364 (482)
162 1wb1_A Translation elongation 97.4 0.00026 8.8E-09 74.7 7.8 100 198-330 76-187 (482)
163 2xex_A Elongation factor G; GT 97.3 0.00058 2E-08 75.2 10.3 65 198-295 78-142 (693)
164 3geh_A MNME, tRNA modification 97.3 0.00034 1.1E-08 73.5 8.0 97 198-330 275-382 (462)
165 1zo1_I IF2, translation initia 97.3 0.00041 1.4E-08 73.6 7.6 33 198-230 54-86 (501)
166 1g7s_A Translation initiation 97.2 0.0013 4.3E-08 71.3 11.3 64 198-294 73-136 (594)
167 3qq5_A Small GTP-binding prote 97.2 0.00044 1.5E-08 71.8 7.4 98 198-330 86-194 (423)
168 1h65_A Chloroplast outer envel 97.2 0.0011 3.7E-08 64.0 9.6 23 11-33 37-59 (270)
169 3izy_P Translation initiation 97.2 0.00037 1.3E-08 74.5 6.4 100 198-330 55-166 (537)
170 2rdo_7 EF-G, elongation factor 97.2 0.0013 4.5E-08 72.5 10.8 65 198-295 85-149 (704)
171 3cb4_D GTP-binding protein LEP 97.2 0.0017 5.9E-08 70.2 11.4 100 198-330 74-180 (599)
172 1kk1_A EIF2gamma; initiation o 97.1 0.0021 7.2E-08 66.0 11.3 102 198-330 86-198 (410)
173 1s0u_A EIF-2-gamma, translatio 97.1 0.0014 4.8E-08 67.3 9.5 33 198-230 84-116 (408)
174 4dcu_A GTP-binding protein ENG 97.1 0.0023 7.7E-08 66.7 11.0 23 11-33 193-215 (456)
175 2ywe_A GTP-binding protein LEP 97.1 0.0034 1.2E-07 67.9 12.5 100 198-330 76-182 (600)
176 2qtf_A Protein HFLX, GTP-bindi 97.0 0.0023 8E-08 65.0 10.2 25 9-33 174-199 (364)
177 3mca_A HBS1, elongation factor 96.9 0.00071 2.4E-08 73.2 5.5 33 198-230 258-290 (592)
178 2hjg_A GTP-binding protein ENG 96.9 0.0014 4.8E-08 67.9 7.4 23 11-33 173-195 (436)
179 1mky_A Probable GTP-binding pr 96.9 0.008 2.7E-07 62.2 13.0 23 11-33 178-200 (439)
180 2dy1_A Elongation factor G; tr 96.7 0.008 2.7E-07 65.8 12.0 63 198-293 77-139 (665)
181 2hjg_A GTP-binding protein ENG 96.3 0.0039 1.3E-07 64.6 5.6 100 198-330 54-163 (436)
182 1mky_A Probable GTP-binding pr 96.0 0.0092 3.1E-07 61.8 7.2 100 198-330 52-164 (439)
183 1u0l_A Probable GTPase ENGC; p 96.0 0.012 4.2E-07 57.7 7.7 99 198-330 66-171 (301)
184 3tr5_A RF-3, peptide chain rel 95.6 0.018 6.2E-07 61.3 7.4 64 198-294 85-148 (528)
185 1lnz_A SPO0B-associated GTP-bi 95.6 0.02 6.9E-07 57.6 7.4 107 198-330 209-328 (342)
186 1d2e_A Elongation factor TU (E 95.1 0.036 1.2E-06 56.5 7.4 33 198-230 69-101 (397)
187 2c78_A Elongation factor TU-A; 95.1 0.036 1.2E-06 56.6 7.4 33 198-230 78-110 (405)
188 4gp7_A Metallophosphoesterase; 95.0 0.011 3.6E-07 53.0 2.8 18 15-32 11-28 (171)
189 1zp6_A Hypothetical protein AT 95.0 0.01 3.6E-07 53.2 2.7 20 15-34 11-30 (191)
190 1ye8_A Protein THEP1, hypothet 94.8 0.014 4.8E-07 53.0 3.1 20 15-34 2-21 (178)
191 3tr0_A Guanylate kinase, GMP k 94.6 0.016 5.5E-07 52.5 3.0 22 15-36 9-30 (205)
192 2ehv_A Hypothetical protein PH 94.6 0.016 5.6E-07 53.9 3.0 24 10-34 28-51 (251)
193 1kgd_A CASK, peripheral plasma 94.5 0.018 6E-07 51.8 3.0 23 15-37 7-29 (180)
194 1kag_A SKI, shikimate kinase I 94.5 0.018 6.2E-07 50.7 3.0 24 15-38 6-29 (173)
195 1lvg_A Guanylate kinase, GMP k 94.5 0.018 6.2E-07 52.8 3.0 23 15-37 6-28 (198)
196 3lw7_A Adenylate kinase relate 94.5 0.019 6.5E-07 49.9 3.0 19 15-33 3-21 (179)
197 3c8u_A Fructokinase; YP_612366 94.4 0.023 8E-07 52.2 3.4 27 11-37 20-46 (208)
198 3a00_A Guanylate kinase, GMP k 94.3 0.02 6.8E-07 51.7 2.9 22 16-37 4-25 (186)
199 1ly1_A Polynucleotide kinase; 94.3 0.022 7.6E-07 50.1 3.2 21 15-35 4-24 (181)
200 2bdt_A BH3686; alpha-beta prot 94.3 0.021 7.1E-07 51.3 2.9 20 15-34 4-23 (189)
201 2bbw_A Adenylate kinase 4, AK4 94.3 0.023 7.9E-07 53.6 3.3 22 13-34 27-48 (246)
202 3kb2_A SPBC2 prophage-derived 94.2 0.023 7.9E-07 49.7 2.9 22 15-36 3-24 (173)
203 4eun_A Thermoresistant glucoki 94.1 0.027 9.1E-07 51.4 3.2 23 14-36 30-52 (200)
204 2j41_A Guanylate kinase; GMP, 94.1 0.024 8.3E-07 51.2 2.9 23 15-37 8-30 (207)
205 4a74_A DNA repair and recombin 94.0 0.024 8.1E-07 52.1 2.7 24 11-35 24-47 (231)
206 2yvu_A Probable adenylyl-sulfa 94.0 0.038 1.3E-06 49.5 3.9 30 5-34 5-34 (186)
207 3fb4_A Adenylate kinase; psych 93.9 0.03 1E-06 51.3 3.1 20 15-34 2-21 (216)
208 1znw_A Guanylate kinase, GMP k 93.9 0.028 9.7E-07 51.6 2.9 28 8-36 16-43 (207)
209 1knq_A Gluconate kinase; ALFA/ 93.9 0.029 1E-06 49.6 2.9 23 14-36 9-31 (175)
210 1qhx_A CPT, protein (chloramph 93.8 0.036 1.2E-06 49.0 3.4 24 15-38 5-28 (178)
211 3dl0_A Adenylate kinase; phosp 93.7 0.032 1.1E-06 51.2 3.1 20 15-34 2-21 (216)
212 1htw_A HI0065; nucleotide-bind 93.7 0.032 1.1E-06 49.7 2.9 25 10-35 31-55 (158)
213 3cm0_A Adenylate kinase; ATP-b 93.7 0.036 1.2E-06 49.3 3.3 22 13-34 4-25 (186)
214 3t61_A Gluconokinase; PSI-biol 93.7 0.032 1.1E-06 50.7 2.9 25 13-37 18-42 (202)
215 1z6g_A Guanylate kinase; struc 93.6 0.032 1.1E-06 51.9 2.9 23 15-37 25-47 (218)
216 3sop_A Neuronal-specific septi 93.6 0.031 1.1E-06 54.1 2.9 24 13-36 2-25 (270)
217 2wwf_A Thymidilate kinase, put 93.6 0.047 1.6E-06 49.6 3.9 25 11-35 8-32 (212)
218 3uie_A Adenylyl-sulfate kinase 93.5 0.036 1.2E-06 50.5 2.9 21 14-34 26-46 (200)
219 3vaa_A Shikimate kinase, SK; s 93.5 0.038 1.3E-06 50.3 3.1 23 15-37 27-49 (199)
220 3asz_A Uridine kinase; cytidin 93.5 0.037 1.3E-06 50.5 3.0 25 14-38 7-31 (211)
221 1nks_A Adenylate kinase; therm 93.5 0.036 1.2E-06 49.3 2.9 21 15-35 3-23 (194)
222 1aky_A Adenylate kinase; ATP:A 93.5 0.04 1.4E-06 50.8 3.3 26 12-37 3-28 (220)
223 1s96_A Guanylate kinase, GMP k 93.4 0.037 1.3E-06 51.9 3.0 27 10-37 14-40 (219)
224 3tau_A Guanylate kinase, GMP k 93.4 0.049 1.7E-06 50.1 3.8 23 15-37 10-32 (208)
225 3tif_A Uncharacterized ABC tra 93.4 0.037 1.3E-06 52.4 2.9 23 11-34 30-52 (235)
226 1via_A Shikimate kinase; struc 93.4 0.04 1.4E-06 48.9 3.0 21 15-35 6-26 (175)
227 2qor_A Guanylate kinase; phosp 93.4 0.041 1.4E-06 50.3 3.1 24 12-35 11-34 (204)
228 2cdn_A Adenylate kinase; phosp 93.4 0.05 1.7E-06 49.3 3.7 27 11-37 18-44 (201)
229 2jaq_A Deoxyguanosine kinase; 93.4 0.044 1.5E-06 49.2 3.3 22 15-36 2-23 (205)
230 1q3t_A Cytidylate kinase; nucl 93.3 0.044 1.5E-06 51.3 3.3 31 5-35 8-38 (236)
231 3ec2_A DNA replication protein 93.3 0.036 1.2E-06 49.4 2.5 21 14-34 39-59 (180)
232 1ukz_A Uridylate kinase; trans 93.3 0.056 1.9E-06 48.9 3.9 29 9-37 11-39 (203)
233 3tlx_A Adenylate kinase 2; str 93.3 0.049 1.7E-06 51.5 3.6 25 11-35 27-51 (243)
234 1kht_A Adenylate kinase; phosp 93.3 0.044 1.5E-06 48.7 3.1 22 14-35 4-25 (192)
235 1tev_A UMP-CMP kinase; ploop, 93.3 0.049 1.7E-06 48.5 3.4 22 14-35 4-25 (196)
236 1cke_A CK, MSSA, protein (cyti 93.3 0.051 1.8E-06 50.0 3.6 25 14-38 6-30 (227)
237 2if2_A Dephospho-COA kinase; a 93.2 0.044 1.5E-06 49.7 3.0 21 15-35 3-23 (204)
238 3trf_A Shikimate kinase, SK; a 93.2 0.046 1.6E-06 48.7 3.1 22 14-35 6-27 (185)
239 2plr_A DTMP kinase, probable t 93.1 0.054 1.9E-06 48.9 3.5 23 14-36 5-27 (213)
240 2pt5_A Shikimate kinase, SK; a 93.1 0.053 1.8E-06 47.4 3.3 22 15-36 2-23 (168)
241 2pcj_A ABC transporter, lipopr 93.1 0.041 1.4E-06 51.6 2.7 20 15-34 32-51 (224)
242 2w0m_A SSO2452; RECA, SSPF, un 93.1 0.046 1.6E-06 50.0 2.9 23 11-34 22-44 (235)
243 2rhm_A Putative kinase; P-loop 93.1 0.043 1.5E-06 49.0 2.7 23 13-35 5-27 (193)
244 1e4v_A Adenylate kinase; trans 93.0 0.048 1.6E-06 50.2 3.0 23 15-37 2-24 (214)
245 1pui_A ENGB, probable GTP-bind 93.0 0.031 1.1E-06 50.5 1.6 23 11-33 24-46 (210)
246 1sgw_A Putative ABC transporte 93.0 0.049 1.7E-06 51.0 3.0 19 15-33 37-55 (214)
247 2onk_A Molybdate/tungstate ABC 93.0 0.048 1.6E-06 51.9 3.0 20 15-34 26-45 (240)
248 1jjv_A Dephospho-COA kinase; P 92.9 0.055 1.9E-06 49.2 3.2 21 15-35 4-24 (206)
249 2cbz_A Multidrug resistance-as 92.9 0.05 1.7E-06 51.6 2.9 20 15-34 33-52 (237)
250 3gfo_A Cobalt import ATP-bindi 92.9 0.05 1.7E-06 53.0 3.0 20 15-34 36-55 (275)
251 2qnr_A Septin-2, protein NEDD5 92.9 0.042 1.4E-06 54.0 2.5 24 10-33 15-38 (301)
252 3b85_A Phosphate starvation-in 92.8 0.047 1.6E-06 50.8 2.7 20 15-34 24-43 (208)
253 1n0u_A EF-2, elongation factor 92.8 0.12 4.1E-06 58.1 6.4 64 198-294 101-164 (842)
254 2hf9_A Probable hydrogenase ni 92.8 0.055 1.9E-06 49.7 3.1 23 12-34 37-59 (226)
255 2p5t_B PEZT; postsegregational 92.8 0.069 2.4E-06 50.7 3.9 28 11-38 30-57 (253)
256 1zak_A Adenylate kinase; ATP:A 92.8 0.052 1.8E-06 50.1 2.9 32 12-43 4-36 (222)
257 3iij_A Coilin-interacting nucl 92.8 0.054 1.8E-06 48.1 2.9 22 13-34 11-32 (180)
258 2iyv_A Shikimate kinase, SK; t 92.8 0.054 1.8E-06 48.3 2.9 24 15-38 4-27 (184)
259 2ff7_A Alpha-hemolysin translo 92.8 0.052 1.8E-06 51.8 2.9 20 15-34 37-56 (247)
260 1g6h_A High-affinity branched- 92.7 0.052 1.8E-06 52.0 2.9 20 15-34 35-54 (257)
261 2eyu_A Twitching motility prot 92.7 0.052 1.8E-06 52.3 2.9 25 10-35 23-47 (261)
262 1ji0_A ABC transporter; ATP bi 92.7 0.054 1.8E-06 51.4 2.9 20 15-34 34-53 (240)
263 1b0u_A Histidine permease; ABC 92.7 0.055 1.9E-06 52.1 3.0 20 15-34 34-53 (262)
264 1mv5_A LMRA, multidrug resista 92.7 0.058 2E-06 51.2 3.1 23 11-34 27-49 (243)
265 1vpl_A ABC transporter, ATP-bi 92.6 0.056 1.9E-06 52.0 3.0 23 11-34 40-62 (256)
266 2pze_A Cystic fibrosis transme 92.6 0.058 2E-06 50.8 3.0 20 15-34 36-55 (229)
267 2pbr_A DTMP kinase, thymidylat 92.6 0.062 2.1E-06 47.8 3.1 21 15-35 2-22 (195)
268 1y63_A LMAJ004144AAA protein; 92.6 0.075 2.6E-06 47.7 3.6 24 13-36 10-33 (184)
269 2d2e_A SUFC protein; ABC-ATPas 92.6 0.057 1.9E-06 51.6 2.9 20 15-34 31-50 (250)
270 2cvh_A DNA repair and recombin 92.6 0.06 2E-06 49.0 2.9 25 10-35 18-42 (220)
271 2qi9_C Vitamin B12 import ATP- 92.5 0.059 2E-06 51.6 3.0 20 15-34 28-47 (249)
272 4g1u_C Hemin import ATP-bindin 92.5 0.058 2E-06 52.1 3.0 20 15-34 39-58 (266)
273 1e6c_A Shikimate kinase; phosp 92.5 0.068 2.3E-06 46.8 3.2 22 15-36 4-25 (173)
274 2bwj_A Adenylate kinase 5; pho 92.5 0.061 2.1E-06 48.2 2.9 24 14-37 13-36 (199)
275 3sr0_A Adenylate kinase; phosp 92.5 0.077 2.6E-06 49.3 3.6 24 15-38 2-25 (206)
276 1ak2_A Adenylate kinase isoenz 92.5 0.07 2.4E-06 49.8 3.4 29 9-37 12-40 (233)
277 2vli_A Antibiotic resistance p 92.4 0.052 1.8E-06 48.0 2.3 23 13-35 5-27 (183)
278 1zd8_A GTP:AMP phosphotransfer 92.4 0.061 2.1E-06 49.9 2.9 23 13-35 7-29 (227)
279 2olj_A Amino acid ABC transpor 92.4 0.062 2.1E-06 51.9 3.0 20 15-34 52-71 (263)
280 1qf9_A UMP/CMP kinase, protein 92.4 0.063 2.2E-06 47.6 2.8 22 14-35 7-28 (194)
281 2c95_A Adenylate kinase 1; tra 92.4 0.064 2.2E-06 47.9 2.9 23 13-35 9-31 (196)
282 2ixe_A Antigen peptide transpo 92.4 0.062 2.1E-06 52.1 2.9 20 15-34 47-66 (271)
283 2nq2_C Hypothetical ABC transp 92.4 0.063 2.1E-06 51.5 2.9 20 15-34 33-52 (253)
284 2z0h_A DTMP kinase, thymidylat 92.4 0.07 2.4E-06 47.7 3.1 21 15-35 2-22 (197)
285 3lnc_A Guanylate kinase, GMP k 92.4 0.043 1.5E-06 51.1 1.7 20 15-34 29-48 (231)
286 2ghi_A Transport protein; mult 92.3 0.063 2.2E-06 51.6 2.9 20 15-34 48-67 (260)
287 2v9p_A Replication protein E1; 92.3 0.097 3.3E-06 51.8 4.3 28 9-37 123-150 (305)
288 1ex7_A Guanylate kinase; subst 92.3 0.081 2.8E-06 48.5 3.5 20 16-35 4-23 (186)
289 1uf9_A TT1252 protein; P-loop, 92.3 0.078 2.7E-06 47.6 3.3 26 11-36 6-31 (203)
290 1lw7_A Transcriptional regulat 92.3 0.073 2.5E-06 53.4 3.4 27 13-39 170-196 (365)
291 2yz2_A Putative ABC transporte 92.2 0.066 2.3E-06 51.6 2.9 20 15-34 35-54 (266)
292 1zuh_A Shikimate kinase; alpha 92.2 0.08 2.7E-06 46.4 3.2 22 15-36 9-30 (168)
293 2zu0_C Probable ATP-dependent 92.2 0.069 2.4E-06 51.6 3.0 23 11-34 45-67 (267)
294 2pjz_A Hypothetical protein ST 92.1 0.073 2.5E-06 51.4 3.1 20 15-34 32-51 (263)
295 2jeo_A Uridine-cytidine kinase 92.1 0.071 2.4E-06 50.3 2.9 24 14-37 26-49 (245)
296 1uj2_A Uridine-cytidine kinase 92.1 0.098 3.3E-06 49.5 3.9 28 10-37 19-46 (252)
297 2ihy_A ABC transporter, ATP-bi 92.1 0.072 2.5E-06 51.9 3.0 20 15-34 49-68 (279)
298 2ze6_A Isopentenyl transferase 92.1 0.074 2.5E-06 50.7 3.0 19 16-34 4-22 (253)
299 2i3b_A HCR-ntpase, human cance 92.1 0.077 2.6E-06 48.6 3.0 20 15-34 3-22 (189)
300 1rz3_A Hypothetical protein rb 92.0 0.087 3E-06 48.1 3.4 25 11-35 20-44 (201)
301 3be4_A Adenylate kinase; malar 92.0 0.069 2.4E-06 49.3 2.7 25 13-37 5-29 (217)
302 2v54_A DTMP kinase, thymidylat 91.9 0.086 2.9E-06 47.5 3.2 24 14-37 5-28 (204)
303 2xb4_A Adenylate kinase; ATP-b 91.9 0.088 3E-06 48.9 3.3 22 15-36 2-23 (223)
304 1nn5_A Similar to deoxythymidy 91.9 0.087 3E-06 47.8 3.2 23 13-35 9-31 (215)
305 2f6r_A COA synthase, bifunctio 91.9 0.1 3.6E-06 50.5 3.9 27 9-35 71-97 (281)
306 3aez_A Pantothenate kinase; tr 91.9 0.076 2.6E-06 52.5 3.0 25 13-37 90-114 (312)
307 1n0w_A DNA repair protein RAD5 91.9 0.081 2.8E-06 48.9 3.0 21 15-35 26-46 (243)
308 2pez_A Bifunctional 3'-phospho 91.8 0.097 3.3E-06 46.5 3.4 22 14-35 6-27 (179)
309 1gvn_B Zeta; postsegregational 91.8 0.1 3.5E-06 50.8 3.8 25 11-35 31-55 (287)
310 3kta_A Chromosome segregation 91.8 0.1 3.5E-06 46.3 3.5 24 15-38 28-51 (182)
311 2qt1_A Nicotinamide riboside k 91.7 0.084 2.9E-06 48.1 2.8 23 14-36 22-44 (207)
312 3a4m_A L-seryl-tRNA(SEC) kinas 91.6 0.092 3.2E-06 50.1 3.2 22 14-35 5-26 (260)
313 2x8a_A Nuclear valosin-contain 91.6 0.1 3.5E-06 50.4 3.4 19 16-34 47-65 (274)
314 1cr0_A DNA primase/helicase; R 91.5 0.08 2.7E-06 51.2 2.7 26 10-36 33-58 (296)
315 3ney_A 55 kDa erythrocyte memb 91.5 0.095 3.2E-06 48.6 3.0 24 14-37 20-43 (197)
316 4e22_A Cytidylate kinase; P-lo 91.4 0.1 3.5E-06 49.6 3.1 21 14-34 28-48 (252)
317 1m7g_A Adenylylsulfate kinase; 91.4 0.098 3.4E-06 48.0 2.9 22 14-35 26-47 (211)
318 3avx_A Elongation factor TS, e 91.4 0.26 8.8E-06 57.2 6.9 34 198-231 362-395 (1289)
319 3umf_A Adenylate kinase; rossm 91.3 0.12 4E-06 48.6 3.5 22 16-37 32-53 (217)
320 1nlf_A Regulatory protein REPA 91.1 0.094 3.2E-06 50.3 2.7 21 15-35 32-52 (279)
321 2qag_C Septin-7; cell cycle, c 91.0 0.11 3.8E-06 53.6 3.3 25 9-33 27-51 (418)
322 2bbs_A Cystic fibrosis transme 91.0 0.1 3.4E-06 51.2 2.8 20 15-34 66-85 (290)
323 3fvq_A Fe(3+) IONS import ATP- 91.0 0.095 3.2E-06 53.1 2.7 20 15-34 32-51 (359)
324 1z47_A CYSA, putative ABC-tran 91.0 0.1 3.6E-06 52.7 2.9 20 15-34 43-62 (355)
325 1c9k_A COBU, adenosylcobinamid 91.0 0.11 3.6E-06 47.6 2.7 19 16-34 2-20 (180)
326 1jbk_A CLPB protein; beta barr 91.0 0.12 4.1E-06 45.1 3.0 21 14-34 44-64 (195)
327 2qag_B Septin-6, protein NEDD5 91.0 0.12 4.1E-06 53.5 3.4 25 9-33 37-62 (427)
328 1ixz_A ATP-dependent metallopr 90.9 0.11 3.9E-06 48.7 3.0 21 16-36 52-72 (254)
329 1vht_A Dephospho-COA kinase; s 90.9 0.14 4.8E-06 46.9 3.5 23 13-35 4-26 (218)
330 2yyz_A Sugar ABC transporter, 90.8 0.11 3.8E-06 52.6 2.9 23 11-34 28-50 (359)
331 3jvv_A Twitching mobility prot 90.8 0.11 3.7E-06 52.5 2.9 19 15-33 125-143 (356)
332 1ltq_A Polynucleotide kinase; 90.8 0.12 4E-06 49.9 3.0 21 15-35 4-24 (301)
333 3rlf_A Maltose/maltodextrin im 90.7 0.12 4E-06 52.9 3.0 25 11-36 28-52 (381)
334 1sq5_A Pantothenate kinase; P- 90.7 0.13 4.5E-06 50.4 3.3 25 13-37 80-104 (308)
335 1v43_A Sugar-binding transport 90.7 0.12 4E-06 52.6 3.0 20 15-34 39-58 (372)
336 2it1_A 362AA long hypothetical 90.7 0.12 4E-06 52.4 3.0 20 15-34 31-50 (362)
337 1gtv_A TMK, thymidylate kinase 90.7 0.059 2E-06 49.0 0.7 20 15-34 2-21 (214)
338 2grj_A Dephospho-COA kinase; T 90.7 0.16 5.4E-06 46.6 3.6 28 11-38 10-37 (192)
339 1g29_1 MALK, maltose transport 90.7 0.12 4E-06 52.6 2.9 20 15-34 31-50 (372)
340 2www_A Methylmalonic aciduria 90.5 0.13 4.5E-06 51.5 3.2 24 11-34 72-95 (349)
341 2wsm_A Hydrogenase expression/ 90.4 0.14 4.9E-06 46.6 3.0 23 12-34 29-51 (221)
342 2qag_A Septin-2, protein NEDD5 90.3 0.13 4.3E-06 51.9 2.8 23 11-33 35-57 (361)
343 3tqc_A Pantothenate kinase; bi 90.2 0.2 6.8E-06 49.9 4.1 29 10-38 89-117 (321)
344 3nh6_A ATP-binding cassette SU 90.2 0.1 3.5E-06 51.6 2.0 23 15-37 82-104 (306)
345 2aka_B Dynamin-1; fusion prote 90.2 0.31 1E-05 46.7 5.4 23 11-33 24-46 (299)
346 1f2t_A RAD50 ABC-ATPase; DNA d 90.2 0.18 6.3E-06 44.0 3.4 20 16-35 26-45 (149)
347 3tui_C Methionine import ATP-b 90.2 0.14 4.8E-06 52.0 3.0 26 11-37 53-78 (366)
348 1odf_A YGR205W, hypothetical 3 90.2 0.2 6.8E-06 49.0 4.0 27 11-37 29-55 (290)
349 2kjq_A DNAA-related protein; s 90.1 0.13 4.4E-06 45.1 2.4 20 15-34 38-57 (149)
350 3d31_A Sulfate/molybdate ABC t 90.1 0.1 3.5E-06 52.6 1.9 20 15-34 28-47 (348)
351 3nwj_A ATSK2; P loop, shikimat 90.0 0.15 5.1E-06 48.9 2.9 22 14-35 49-70 (250)
352 3bos_A Putative DNA replicatio 90.0 0.16 5.3E-06 46.5 2.9 22 13-34 52-73 (242)
353 1bif_A 6-phosphofructo-2-kinas 90.0 0.16 5.5E-06 52.8 3.4 24 11-34 37-60 (469)
354 1iy2_A ATP-dependent metallopr 89.9 0.16 5.3E-06 48.7 3.0 21 16-36 76-96 (278)
355 2ewv_A Twitching motility prot 89.9 0.15 5E-06 51.7 2.9 20 15-34 138-157 (372)
356 2gza_A Type IV secretion syste 89.9 0.13 4.5E-06 51.7 2.6 23 15-37 177-199 (361)
357 2f1r_A Molybdopterin-guanine d 89.8 0.086 2.9E-06 47.6 1.0 22 15-36 4-25 (171)
358 2pt7_A CAG-ALFA; ATPase, prote 89.8 0.12 4.2E-06 51.4 2.2 20 15-34 173-192 (330)
359 1p9r_A General secretion pathw 89.7 0.15 5.2E-06 52.6 2.9 20 15-34 169-188 (418)
360 2dr3_A UPF0273 protein PH0284; 89.7 0.16 5.3E-06 47.0 2.7 19 15-33 25-43 (247)
361 2dpy_A FLII, flagellum-specifi 89.6 0.17 6E-06 52.4 3.2 28 9-37 154-181 (438)
362 1jwy_B Dynamin A GTPase domain 89.6 0.23 7.8E-06 48.1 3.9 23 11-33 22-44 (315)
363 3r20_A Cytidylate kinase; stru 89.5 0.19 6.4E-06 47.8 3.2 23 12-34 8-30 (233)
364 2vp4_A Deoxynucleoside kinase; 89.5 0.12 4.2E-06 48.1 1.9 23 14-36 21-43 (230)
365 1rj9_A FTSY, signal recognitio 89.4 0.17 5.9E-06 49.8 2.9 24 14-37 103-126 (304)
366 3gd7_A Fusion complex of cysti 89.4 0.15 5.3E-06 52.1 2.7 20 15-34 49-68 (390)
367 1tf7_A KAIC; homohexamer, hexa 89.3 0.15 5.2E-06 53.8 2.7 22 11-33 38-59 (525)
368 3b9q_A Chloroplast SRP recepto 89.3 0.18 6.1E-06 49.6 3.0 23 14-36 101-123 (302)
369 1oxx_K GLCV, glucose, ABC tran 89.2 0.1 3.6E-06 52.6 1.2 23 11-34 30-52 (353)
370 2npi_A Protein CLP1; CLP1-PCF1 89.2 0.16 5.6E-06 53.0 2.7 20 15-34 140-159 (460)
371 3ake_A Cytidylate kinase; CMP 89.1 0.2 6.8E-06 45.1 2.9 24 15-38 4-27 (208)
372 1lv7_A FTSH; alpha/beta domain 89.1 0.2 6.7E-06 47.2 3.0 21 14-34 46-66 (257)
373 2obl_A ESCN; ATPase, hydrolase 89.1 0.18 6.2E-06 50.6 2.8 26 11-37 70-95 (347)
374 1np6_A Molybdopterin-guanine d 89.0 0.21 7.2E-06 45.1 3.0 20 15-34 8-27 (174)
375 4eaq_A DTMP kinase, thymidylat 89.0 0.22 7.4E-06 46.8 3.1 26 12-37 25-50 (229)
376 2p65_A Hypothetical protein PF 88.8 0.17 5.8E-06 44.1 2.2 21 14-34 44-64 (187)
377 1pzn_A RAD51, DNA repair and r 88.6 0.19 6.5E-06 50.4 2.7 23 15-37 133-155 (349)
378 1yrb_A ATP(GTP)binding protein 88.5 0.35 1.2E-05 45.2 4.3 32 3-34 4-35 (262)
379 1yqt_A RNAse L inhibitor; ATP- 88.4 0.27 9.2E-06 52.3 3.8 25 9-34 44-68 (538)
380 1njg_A DNA polymerase III subu 88.4 0.24 8.1E-06 44.7 2.9 20 15-34 47-66 (250)
381 1u0l_A Probable GTPase ENGC; p 88.4 0.23 7.8E-06 48.6 2.9 20 15-34 171-190 (301)
382 2w58_A DNAI, primosome compone 88.3 0.24 8.4E-06 44.6 2.9 21 14-34 55-75 (202)
383 2chg_A Replication factor C sm 88.3 0.25 8.4E-06 44.1 2.9 19 16-34 41-59 (226)
384 1in4_A RUVB, holliday junction 88.1 0.24 8.2E-06 49.0 3.0 20 15-34 53-72 (334)
385 2qm8_A GTPase/ATPase; G protei 88.1 0.24 8.2E-06 49.4 3.0 21 14-34 56-76 (337)
386 2yv5_A YJEQ protein; hydrolase 88.1 0.24 8.3E-06 48.5 2.9 22 15-37 167-188 (302)
387 3t34_A Dynamin-related protein 87.8 0.48 1.6E-05 47.3 5.0 67 198-295 139-218 (360)
388 2oap_1 GSPE-2, type II secreti 87.8 0.22 7.6E-06 52.7 2.7 20 15-34 262-281 (511)
389 3e70_C DPA, signal recognition 87.8 0.26 8.9E-06 49.1 3.0 25 12-36 128-152 (328)
390 2aka_B Dynamin-1; fusion prote 87.8 0.24 8.3E-06 47.4 2.7 66 198-295 128-207 (299)
391 1nij_A Hypothetical protein YJ 87.7 0.21 7.2E-06 49.2 2.3 20 15-34 6-25 (318)
392 2yhs_A FTSY, cell division pro 87.7 0.26 8.8E-06 52.1 3.0 21 14-34 294-314 (503)
393 3qks_A DNA double-strand break 87.5 0.34 1.2E-05 44.5 3.4 22 15-36 25-46 (203)
394 3b5x_A Lipid A export ATP-bind 87.3 0.26 8.7E-06 52.8 2.8 23 15-37 371-393 (582)
395 1xjc_A MOBB protein homolog; s 87.3 0.32 1.1E-05 43.9 3.0 19 15-33 6-24 (169)
396 2og2_A Putative signal recogni 87.2 0.29 1E-05 49.4 3.0 24 13-36 157-180 (359)
397 3zvl_A Bifunctional polynucleo 87.2 0.4 1.4E-05 49.1 4.1 23 12-34 257-279 (416)
398 2j69_A Bacterial dynamin-like 86.9 0.62 2.1E-05 51.1 5.6 67 197-295 176-245 (695)
399 1svm_A Large T antigen; AAA+ f 86.9 0.3 1E-05 49.6 2.9 20 15-34 171-190 (377)
400 3h4m_A Proteasome-activating n 86.9 0.31 1.1E-05 46.3 2.9 21 14-34 52-72 (285)
401 1ewq_A DNA mismatch repair pro 86.9 0.29 9.9E-06 54.4 3.0 22 15-36 578-599 (765)
402 2qpt_A EH domain-containing pr 86.8 0.42 1.4E-05 51.0 4.1 23 11-33 63-85 (550)
403 3b9p_A CG5977-PA, isoform A; A 86.8 0.32 1.1E-05 46.6 2.9 22 13-34 54-75 (297)
404 3n70_A Transport activator; si 86.7 0.36 1.2E-05 41.5 3.0 23 12-34 23-45 (145)
405 1wb9_A DNA mismatch repair pro 86.5 0.31 1.1E-05 54.4 3.0 22 15-36 609-630 (800)
406 2qz4_A Paraplegin; AAA+, SPG7, 86.4 0.36 1.2E-05 45.0 3.0 21 14-34 40-60 (262)
407 3bk7_A ABC transporter ATP-bin 86.4 0.41 1.4E-05 51.7 3.8 25 9-34 114-138 (607)
408 3qf4_B Uncharacterized ABC tra 86.3 0.33 1.1E-05 52.2 3.0 23 15-37 383-405 (598)
409 1ni3_A YCHF GTPase, YCHF GTP-b 86.3 0.36 1.2E-05 49.4 3.1 24 11-34 18-41 (392)
410 3lda_A DNA repair protein RAD5 86.3 0.31 1.1E-05 49.9 2.7 20 15-34 180-199 (400)
411 3euj_A Chromosome partition pr 86.1 0.35 1.2E-05 50.8 3.0 24 14-37 30-53 (483)
412 2rcn_A Probable GTPase ENGC; Y 86.0 0.37 1.3E-05 48.7 3.0 20 15-34 217-236 (358)
413 2dby_A GTP-binding protein; GD 86.0 0.37 1.3E-05 48.8 3.0 33 198-230 72-111 (368)
414 3cf0_A Transitional endoplasmi 85.9 0.37 1.3E-05 46.8 2.9 21 15-35 51-71 (301)
415 2o8b_B DNA mismatch repair pro 85.9 0.39 1.3E-05 55.0 3.4 22 15-36 791-812 (1022)
416 3b60_A Lipid A export ATP-bind 85.6 0.36 1.2E-05 51.6 2.8 23 15-37 371-393 (582)
417 3thx_A DNA mismatch repair pro 85.5 0.37 1.3E-05 54.6 3.0 20 15-34 664-683 (934)
418 1l8q_A Chromosomal replication 85.4 0.4 1.4E-05 46.7 2.9 21 14-34 38-58 (324)
419 3j16_B RLI1P; ribosome recycli 85.3 0.52 1.8E-05 50.9 3.9 23 11-34 102-124 (608)
420 1tq4_A IIGP1, interferon-induc 85.2 0.38 1.3E-05 49.5 2.7 20 15-34 71-90 (413)
421 3gmt_A Adenylate kinase; ssgci 85.2 0.56 1.9E-05 44.4 3.6 27 11-37 6-32 (230)
422 2px0_A Flagellar biosynthesis 85.2 0.39 1.3E-05 47.0 2.7 24 13-36 105-128 (296)
423 3ozx_A RNAse L inhibitor; ATP 85.1 0.57 1.9E-05 49.8 4.0 20 15-34 27-46 (538)
424 2h92_A Cytidylate kinase; ross 85.1 0.59 2E-05 42.5 3.7 25 14-38 4-28 (219)
425 1a7j_A Phosphoribulokinase; tr 85.0 0.34 1.2E-05 47.2 2.1 24 13-36 5-28 (290)
426 2yl4_A ATP-binding cassette SU 85.0 0.38 1.3E-05 51.6 2.7 23 15-37 372-394 (595)
427 1jal_A YCHF protein; nucleotid 84.9 0.48 1.6E-05 48.0 3.2 33 198-230 69-108 (363)
428 3qf7_A RAD50; ABC-ATPase, ATPa 84.8 0.45 1.5E-05 47.9 3.0 25 16-40 26-51 (365)
429 3t34_A Dynamin-related protein 84.7 0.44 1.5E-05 47.5 2.9 21 14-34 35-55 (360)
430 1sxj_E Activator 1 40 kDa subu 84.6 0.4 1.4E-05 47.0 2.4 23 16-38 39-62 (354)
431 3hr8_A Protein RECA; alpha and 84.6 0.42 1.5E-05 48.2 2.7 21 15-35 63-83 (356)
432 4fcw_A Chaperone protein CLPB; 84.5 0.49 1.7E-05 45.4 3.0 20 15-34 49-68 (311)
433 3p32_A Probable GTPase RV1496/ 84.4 0.59 2E-05 46.7 3.6 24 11-34 77-100 (355)
434 1jwy_B Dynamin A GTPase domain 84.2 0.49 1.7E-05 45.7 2.8 67 198-295 134-213 (315)
435 3bk7_A ABC transporter ATP-bin 84.2 0.48 1.6E-05 51.2 3.0 20 15-34 384-403 (607)
436 1tf7_A KAIC; homohexamer, hexa 84.2 0.45 1.5E-05 50.2 2.7 20 15-34 283-302 (525)
437 2ocp_A DGK, deoxyguanosine kin 84.1 0.58 2E-05 43.6 3.2 24 14-37 3-26 (241)
438 1vma_A Cell division protein F 84.0 0.53 1.8E-05 46.4 3.0 23 14-36 105-127 (306)
439 3ozx_A RNAse L inhibitor; ATP 84.0 0.5 1.7E-05 50.3 3.0 20 15-34 296-315 (538)
440 2axn_A 6-phosphofructo-2-kinas 83.8 0.51 1.7E-05 49.9 3.0 23 12-34 34-56 (520)
441 2ohf_A Protein OLA1, GTP-bindi 83.8 0.58 2E-05 47.9 3.3 35 198-232 89-130 (396)
442 1qhl_A Protein (cell division 83.6 0.14 4.8E-06 48.4 -1.3 22 16-37 30-51 (227)
443 3thx_B DNA mismatch repair pro 83.5 0.44 1.5E-05 54.0 2.4 20 15-34 675-694 (918)
444 2qby_A CDC6 homolog 1, cell di 83.5 0.52 1.8E-05 46.2 2.7 21 14-34 46-66 (386)
445 4ag6_A VIRB4 ATPase, type IV s 83.4 0.57 1.9E-05 47.2 3.0 23 12-34 34-56 (392)
446 1yqt_A RNAse L inhibitor; ATP- 83.4 0.57 1.9E-05 49.8 3.1 20 15-34 314-333 (538)
447 1wxq_A GTP-binding protein; st 83.3 0.67 2.3E-05 47.3 3.5 34 198-231 74-114 (397)
448 2ga8_A Hypothetical 39.9 kDa p 83.2 0.72 2.4E-05 46.6 3.6 21 14-34 25-45 (359)
449 1ofh_A ATP-dependent HSL prote 83.2 0.61 2.1E-05 44.5 3.0 22 13-34 50-71 (310)
450 3syl_A Protein CBBX; photosynt 83.1 0.7 2.4E-05 44.3 3.4 23 12-34 66-88 (309)
451 1d2n_A N-ethylmaleimide-sensit 83.1 0.61 2.1E-05 44.2 2.9 24 11-34 62-85 (272)
452 1fnn_A CDC6P, cell division co 83.1 0.6 2E-05 46.0 3.0 20 15-34 46-65 (389)
453 1p5z_B DCK, deoxycytidine kina 83.1 0.37 1.3E-05 45.7 1.4 23 12-34 23-45 (263)
454 1t9h_A YLOQ, probable GTPase E 83.1 0.25 8.5E-06 48.9 0.2 20 15-34 175-194 (307)
455 2c78_A Elongation factor TU-A; 83.0 0.67 2.3E-05 47.0 3.4 26 9-34 7-32 (405)
456 3j16_B RLI1P; ribosome recycli 83.0 0.58 2E-05 50.6 3.0 20 15-34 380-399 (608)
457 4a82_A Cystic fibrosis transme 82.9 0.46 1.6E-05 50.8 2.2 20 15-34 369-388 (578)
458 3cr8_A Sulfate adenylyltranfer 82.8 0.39 1.3E-05 51.3 1.6 21 14-34 370-390 (552)
459 2zr9_A Protein RECA, recombina 82.6 0.57 2E-05 46.9 2.7 19 16-34 64-82 (349)
460 1m8p_A Sulfate adenylyltransfe 82.6 0.86 2.9E-05 48.8 4.2 25 10-34 393-417 (573)
461 1d2e_A Elongation factor TU (E 82.6 0.72 2.5E-05 46.8 3.4 23 12-34 2-24 (397)
462 2p67_A LAO/AO transport system 82.6 0.69 2.3E-05 45.9 3.2 32 198-232 152-183 (341)
463 2r8r_A Sensor protein; KDPD, P 82.5 0.84 2.9E-05 43.2 3.6 24 9-32 2-25 (228)
464 3szr_A Interferon-induced GTP- 82.5 0.47 1.6E-05 51.2 2.0 20 15-34 47-66 (608)
465 2r62_A Cell division protease 82.4 0.39 1.3E-05 45.2 1.3 20 15-34 46-65 (268)
466 1udx_A The GTP-binding protein 82.4 0.5 1.7E-05 48.7 2.1 19 15-33 159-177 (416)
467 3d3q_A TRNA delta(2)-isopenten 82.3 0.66 2.3E-05 46.5 2.9 22 15-36 9-30 (340)
468 1sxj_C Activator 1 40 kDa subu 82.3 0.65 2.2E-05 45.6 2.9 19 16-34 49-67 (340)
469 3crm_A TRNA delta(2)-isopenten 82.2 0.68 2.3E-05 46.1 3.0 21 15-35 7-27 (323)
470 2v1u_A Cell division control p 82.0 0.62 2.1E-05 45.7 2.6 22 13-34 44-65 (387)
471 3vqt_A RF-3, peptide chain rel 82.0 1.9 6.4E-05 45.9 6.5 83 156-293 83-165 (548)
472 3hws_A ATP-dependent CLP prote 81.9 0.98 3.4E-05 44.8 4.1 26 12-37 50-75 (363)
473 1yrb_A ATP(GTP)binding protein 81.8 2 6.8E-05 39.9 6.0 33 197-230 111-149 (262)
474 4edh_A DTMP kinase, thymidylat 81.7 0.8 2.7E-05 42.5 3.1 21 14-34 7-27 (213)
475 3qf4_A ABC transporter, ATP-bi 81.6 0.63 2.1E-05 49.9 2.7 20 15-34 371-390 (587)
476 1xwi_A SKD1 protein; VPS4B, AA 81.6 0.72 2.5E-05 45.4 2.9 21 14-34 46-66 (322)
477 3cnl_A YLQF, putative uncharac 81.4 0.78 2.7E-05 44.0 3.0 21 14-34 100-120 (262)
478 3pfi_A Holliday junction ATP-d 81.3 0.76 2.6E-05 44.8 2.9 22 14-35 56-77 (338)
479 1w1w_A Structural maintenance 81.3 0.93 3.2E-05 46.3 3.7 24 15-38 28-51 (430)
480 2orw_A Thymidine kinase; TMTK, 81.2 0.74 2.5E-05 41.5 2.7 18 16-33 6-23 (184)
481 3eie_A Vacuolar protein sortin 81.2 0.75 2.6E-05 45.0 2.9 22 13-34 51-72 (322)
482 4aby_A DNA repair protein RECN 81.2 0.36 1.2E-05 48.8 0.5 25 15-39 62-86 (415)
483 1e69_A Chromosome segregation 81.2 0.74 2.5E-05 45.2 2.8 24 15-38 26-49 (322)
484 3co5_A Putative two-component 81.2 0.42 1.4E-05 41.0 0.9 21 13-33 27-47 (143)
485 3m6a_A ATP-dependent protease 81.0 0.74 2.5E-05 48.9 2.9 22 15-36 110-131 (543)
486 1wxq_A GTP-binding protein; st 81.0 0.75 2.6E-05 46.9 2.9 21 14-34 1-21 (397)
487 2iw3_A Elongation factor 3A; a 80.9 0.75 2.6E-05 52.4 3.1 20 15-34 463-482 (986)
488 2qmh_A HPR kinase/phosphorylas 80.9 0.82 2.8E-05 42.6 2.8 22 12-33 33-54 (205)
489 3t15_A Ribulose bisphosphate c 80.7 0.85 2.9E-05 44.2 3.0 23 12-34 35-57 (293)
490 1sxj_D Activator 1 41 kDa subu 80.7 0.82 2.8E-05 44.5 2.9 19 16-34 61-79 (353)
491 3qkt_A DNA double-strand break 80.3 0.87 3E-05 45.1 3.0 19 16-34 26-44 (339)
492 3v9p_A DTMP kinase, thymidylat 80.2 0.77 2.6E-05 43.2 2.5 23 12-34 24-46 (227)
493 3tqf_A HPR(Ser) kinase; transf 80.1 0.86 2.9E-05 41.6 2.6 22 12-33 15-36 (181)
494 3ux8_A Excinuclease ABC, A sub 80.1 0.63 2.2E-05 50.5 2.1 18 15-32 350-367 (670)
495 3ld9_A DTMP kinase, thymidylat 80.1 1.1 3.9E-05 41.9 3.6 25 10-34 18-42 (223)
496 1r8s_A ADP-ribosylation factor 80.0 1.9 6.6E-05 36.4 4.8 43 398-440 73-115 (164)
497 1zu4_A FTSY; GTPase, signal re 80.0 0.89 3.1E-05 45.0 3.0 21 14-34 106-126 (320)
498 3llm_A ATP-dependent RNA helic 79.8 0.97 3.3E-05 41.9 3.0 19 15-33 78-96 (235)
499 2qen_A Walker-type ATPase; unk 79.8 0.94 3.2E-05 43.7 3.0 20 15-34 33-52 (350)
500 2qpt_A EH domain-containing pr 79.7 1 3.5E-05 48.0 3.5 66 197-294 156-232 (550)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=8.2e-75 Score=586.88 Aligned_cols=299 Identities=67% Similarity=1.024 Sum_probs=286.6
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCCCccCHHHHHHHh
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIR 88 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~~~~~~~~a~~i~ 88 (463)
..++++|+||||+||||||||+|||||||++||+++|+..|+++||.|++++|++|++||+.+++++++|+++..++.++
T Consensus 3 ~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~~~~~~~~~~~~~ 82 (327)
T 3ohm_A 3 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVR 82 (327)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSTHHHHHHHHHH
T ss_pred hhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccccceeEEEE
Q psy16468 89 SVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPF 168 (463)
Q Consensus 89 ~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T~Gi~e~~f 168 (463)
+++.....+++++++++|..||+||+||+||+|++||+|+||++|||++++||++++|.||.+|++++|.||+|+.+..|
T Consensus 83 ~~~~~~~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~~~ 162 (327)
T 3ohm_A 83 EVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPF 162 (327)
T ss_dssp TCCGGGCCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCCCSEEEEEE
T ss_pred cccccccccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCceeeEEEEEE
Confidence 88776667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHH
Q psy16468 169 DLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK 248 (463)
Q Consensus 169 ~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl 248 (463)
.++++++ .+||+|||+++|++|.|||+++++||||+|+|+|||++.|+.+.|||++++
T Consensus 163 ~~~~v~l----------------------~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~ 220 (327)
T 3ohm_A 163 DLQSVIF----------------------RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK 220 (327)
T ss_dssp EETTEEE----------------------EEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH
T ss_pred Eeeceee----------------------EEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH
Confidence 9999888 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHHH
Q psy16468 249 ALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFILR 328 (463)
Q Consensus 249 ~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~ 328 (463)
.+|+++++++++.++|++ |++||+|++++|+... ++++|||+|+|++.++++|.+||++
T Consensus 221 ~~~~~i~~~~~~~~~~ii------------------L~~NK~DL~~~ki~~~---~l~~~fp~y~g~~~~~e~a~~fi~~ 279 (327)
T 3ohm_A 221 ALFRTIITYPWFQNSSVI------------------LFLNKKDLLEEKIMYS---HLVDYFPEYDGPQRDAQAAREFILK 279 (327)
T ss_dssp HHHHHHHTSGGGTTCEEE------------------EEEECHHHHHHHTTTS---CGGGTCTTCCSCSSCHHHHHHHHHH
T ss_pred HHHHHHhhhhccCCceEE------------------EEEECchhhhhhhccc---hHhhhchhccCCCCCHHHHHHHHHH
Confidence 999999999999999999 9999999999999888 9999999999998899999999999
Q ss_pred Hh-ccCCCCCCcccccccCCCcc
Q psy16468 329 MT-STGRDRSARVHSANVRRPQS 350 (463)
Q Consensus 329 ~f-~~~~~~~~~v~~H~vR~~~~ 350 (463)
+| ++++.+.+++|.|++....+
T Consensus 280 ~F~~~~~~~~~~i~~~~TsA~d~ 302 (327)
T 3ohm_A 280 MFVDLNPDSDKIIYSHFTCATDT 302 (327)
T ss_dssp HHHSSCTTTTSCEEEEECCTTCH
T ss_pred HHHhhcccccCCcEEEEEEeecC
Confidence 99 88877788999999877644
No 2
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=5.8e-71 Score=560.92 Aligned_cols=293 Identities=31% Similarity=0.567 Sum_probs=270.0
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCCCccCHHHHHHHhc
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRS 89 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~~~~~~~~a~~i~~ 89 (463)
+++++|+||||+||||||||+|||||||++||+++|++.|+++||.|++++|++|++||+.+++++++++++..+ ++
T Consensus 2 ~~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~~~~~~~~~---~~ 78 (340)
T 4fid_A 2 NAKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMKYQPKSKEF---TT 78 (340)
T ss_dssp --CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCSGGG---SC
T ss_pred CCCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCChhhHHHH---hh
Confidence 478999999999999999999999999999999999999999999999999999999999999999999887665 33
Q ss_pred ccccccccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccccceeEEEEe
Q psy16468 90 VDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFD 169 (463)
Q Consensus 90 ~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T~Gi~e~~f~ 169 (463)
.+ ....+++++++++|..||+||+||+||+|++||+|+||+.|||++++||++++|.||++|++++|.+|+|+.+..|.
T Consensus 79 ~~-~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~~ 157 (340)
T 4fid_A 79 ED-PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDFV 157 (340)
T ss_dssp CS-CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEEE
T ss_pred cc-cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceeeeEEEEEE
Confidence 33 33567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHH
Q psy16468 170 LEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA 249 (463)
Q Consensus 170 ~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~ 249 (463)
++++++ .+||+|||+++|++|.+||+++++||||+|+++|||++.|+...|+|++++.
T Consensus 158 ~~~v~l----------------------~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~ 215 (340)
T 4fid_A 158 VKDIPF----------------------HLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA 215 (340)
T ss_dssp SSSCEE----------------------EEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH
T ss_pred eeeeee----------------------ccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH
Confidence 999888 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHHHH
Q psy16468 250 LFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFILRM 329 (463)
Q Consensus 250 lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~ 329 (463)
+|+++++++++.++|++ |++||+|++++|+... ++++|||+|+|+. ++++|.+||.++
T Consensus 216 ~~~~i~~~~~~~~~pii------------------Lv~NK~DL~~eki~~~---~l~~~fp~y~g~~-~~e~a~~~i~~~ 273 (340)
T 4fid_A 216 VFKDIMTNEFLKGAVKL------------------IFLNKMDLFEEKLTKV---PLNTIFPEYTGGD-NAVMGAQYIQQL 273 (340)
T ss_dssp HHHHHHHCGGGTTSEEE------------------EEEECHHHHHHHHHHS---CGGGTCTTCCCTT-CHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCCeEE------------------EEEECchhhhhhcCcc---hHHHhhhhhcCCC-CHHHHHHHHHHh
Confidence 99999999999999999 9999999999999877 9999999999986 799999999999
Q ss_pred h-c------cCCCCC-----------CcccccccCCCcc
Q psy16468 330 T-S------TGRDRS-----------ARVHSANVRRPQS 350 (463)
Q Consensus 330 f-~------~~~~~~-----------~~v~~H~vR~~~~ 350 (463)
| + +++.+. +.+|.|++....+
T Consensus 274 f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt 312 (340)
T 4fid_A 274 FTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDG 312 (340)
T ss_dssp HHTTSEEEESCC--------------CEEEEEEECTTCH
T ss_pred cccccchhhhhccccccccccccccCcceEEEEEEeeCc
Confidence 9 2 233333 6799999887755
No 3
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=5.9e-68 Score=542.64 Aligned_cols=298 Identities=42% Similarity=0.683 Sum_probs=276.2
Q ss_pred CCCCcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCCCccCHHHHHHH
Q psy16468 8 SCPALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELI 87 (463)
Q Consensus 8 ~~~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~~~~~~~~a~~i 87 (463)
...++++||||||+||||||||+|||||||++||+++|+..|+++||.|++++|++|++||+.++++++++++++.++.+
T Consensus 27 ~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 106 (353)
T 1cip_A 27 EKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQL 106 (353)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCSSTTHHHHHHHH
T ss_pred HhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Confidence 34477999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hccccccc-ccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccccceeEE
Q psy16468 88 RSVDFETV-TTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEY 166 (463)
Q Consensus 88 ~~~~~~~~-~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T~Gi~e~ 166 (463)
+.+..... ..++++++++|..||+||+||+||.|+++|+|+||+.|||++++||+.++|.||.+|++++|.||+|+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~~~Y~PT~~Dil~~~~~T~Gi~~~ 186 (353)
T 1cip_A 107 FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVET 186 (353)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHTCCCCCCSEEEE
T ss_pred HhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhcCCCCCCccccccccCceeceEEE
Confidence 76643322 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHH
Q psy16468 167 PFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEE 246 (463)
Q Consensus 167 ~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~e 246 (463)
.|.++++.+ .+||+|||+++|++|.+||+++++||||+|+++|||++.|++..|+|++
T Consensus 187 ~~~~~~~~l----------------------~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e 244 (353)
T 1cip_A 187 HFTFKDLHF----------------------KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244 (353)
T ss_dssp EEEETTEEE----------------------EEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHH
T ss_pred EEeeCCeeE----------------------EEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHH
Confidence 999998888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHH
Q psy16468 247 SKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFI 326 (463)
Q Consensus 247 sl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi 326 (463)
++.+|+++++++++.++|++ ||+||+|++++|+... ++++|||+|.|+ .++++|.+|+
T Consensus 245 ~~~~~~~i~~~~~~~~~pii------------------Lv~NK~DL~~~ki~~~---~l~~~fp~~~g~-~~~~e~~~~~ 302 (353)
T 1cip_A 245 SMKLFDSICNNKWFTDTSII------------------LFLNKKDLFEEKIKKS---PLTICYPEYAGS-NTYEEAAAYI 302 (353)
T ss_dssp HHHHHHHHHTCGGGTTSEEE------------------EEEECHHHHHHHHTTS---CGGGTCTTCCSC-SCHHHHHHHH
T ss_pred HHHHHHHHHcCccccCCcEE------------------EEEECcCchhhhcccc---chhhcccccCCC-CCHHHHHHHH
Confidence 99999999999999999999 9999999999999887 999999999997 5799999999
Q ss_pred HHHh-ccCCC-CCCcccccccCCCc
Q psy16468 327 LRMT-STGRD-RSARVHSANVRRPQ 349 (463)
Q Consensus 327 ~~~f-~~~~~-~~~~v~~H~vR~~~ 349 (463)
..+| ++++. ..+.++.|.+....
T Consensus 303 ~~~f~~l~~~~~~~~~~~~etSA~~ 327 (353)
T 1cip_A 303 QCQFEDLNKRKDTKEIYTHFTCATD 327 (353)
T ss_dssp HHHHHTTCSCTTTCCEEEEECCTTC
T ss_pred HHHHHHhhcccCCCceEEEEEECcC
Confidence 9999 77654 35688888876653
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=5.1e-66 Score=529.96 Aligned_cols=296 Identities=36% Similarity=0.650 Sum_probs=267.9
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCCCccCHHHHHHHhc
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRS 89 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~~~~~~~~a~~i~~ 89 (463)
.++++||||||+||||||||+||||++|++||+++|++.|+.+|+.|++++|+.||+||+.++++++++++++.++.++.
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~~n~~~s~~~il~a~~~~~i~~~~~~~~~~~~~~~~ 109 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMA 109 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSGGGHHHHHHHHT
T ss_pred hcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999888888876
Q ss_pred ccccc---------cccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccc
Q psy16468 90 VDFET---------VTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPT 160 (463)
Q Consensus 90 ~~~~~---------~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T 160 (463)
..... ...+ ++++++|..||+||+||+||+|++||+|+||++|||++++||++++|.||.+|++++|.+|
T Consensus 110 ~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T 188 (362)
T 1zcb_A 110 FDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPT 188 (362)
T ss_dssp SCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCC
T ss_pred hcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHHHHHHHhcCCCCCChhhhhhccCCc
Confidence 64321 1356 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCc
Q psy16468 161 TGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESEN 240 (463)
Q Consensus 161 ~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~ 240 (463)
+|+.+..|.++++.+ .+||+|||+++|++|.+||+++++||||+|+++|||++.|++.
T Consensus 189 ~Gi~~~~~~~~~~~l----------------------~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~ 246 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPF----------------------KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246 (362)
T ss_dssp SSEEEEEEEETTEEE----------------------EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEE
T ss_pred cceEEEEeeeCCeEE----------------------EEEeccchhhhhhhHHHHhCCCCEEEEEEECcccccccccccc
Confidence 999999999998888 9999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHH
Q psy16468 241 ENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAI 320 (463)
Q Consensus 241 ~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~ 320 (463)
.|+|++++.+|+++++++++.++|++ ||+||+|++++|+... +|++|||+|+|.+.+++
T Consensus 247 ~n~~~es~~~~~~i~~~~~~~~~piI------------------Lv~NK~DL~~~ki~~~---~l~~~fp~y~g~~~~~~ 305 (362)
T 1zcb_A 247 TNRLTESLNIFETIVNNRVFSNVSII------------------LFLNKTDLLEEKVQVV---SIKDYFLEFEGDPHCLR 305 (362)
T ss_dssp EEHHHHHHHHHHHHHTCGGGTTSEEE------------------EEEECHHHHHHHTTTC---CGGGTCTTCCSCTTCHH
T ss_pred ccHHHHHHHHHHHHhcchhhCCCCEE------------------EEEEChhhhhhhcccc---chhhcCccccCCCCCHH
Confidence 99999999999999999999999999 9999999999999877 99999999999866899
Q ss_pred HHHHHHHHHh-ccCCCC-CCcccccccCCCc
Q psy16468 321 AAREFILRMT-STGRDR-SARVHSANVRRPQ 349 (463)
Q Consensus 321 ~a~~fi~~~f-~~~~~~-~~~v~~H~vR~~~ 349 (463)
+|.+|+..+| ++++.+ .+.+|.|.+....
T Consensus 306 e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d 336 (362)
T 1zcb_A 306 DVQKFLVECFRGKRRDQQQRPLYHHFTTAIN 336 (362)
T ss_dssp HHHHHHHHHHHTTCSSCC--CCEEEECCTTC
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEecCC
Confidence 9999999999 776643 5678888876653
No 5
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=5e-66 Score=535.34 Aligned_cols=302 Identities=34% Similarity=0.559 Sum_probs=269.4
Q ss_pred CCCCcceeEEEECCCCCChhHHHHHHHHhcCCCCCHH---------------HHhhhhhhHHHHHHHHHHHHHHHHHHcc
Q psy16468 8 SCPALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDE---------------DKRGFIKLVYQNIFMAMQSMIRAMDLLK 72 (463)
Q Consensus 8 ~~~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~---------------E~~~~r~~I~~Nii~~~~~li~a~~~l~ 72 (463)
...++++||||||+||||||||+|||||||++||+++ |+..|+++||.|++++|++|++||..++
T Consensus 35 ~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~ 114 (402)
T 1azs_C 35 QVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLV 114 (402)
T ss_dssp -CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------------CTTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3447899999999999999999999999999999976 6678999999999999999999999998
Q ss_pred --ccCCCccCHHHHHHHhcccccccccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCc
Q psy16468 73 --IQYADPTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTE 150 (463)
Q Consensus 73 --i~~~~~~~~~~a~~i~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~ 150 (463)
+++++++++..++.++.........++++++++|..||+||+||+||.|++||+|+|+++|||++++||++++|.||.
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~ 194 (402)
T 1azs_C 115 PPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSD 194 (402)
T ss_dssp SCCCCSSGGGHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCH
T ss_pred CCcccCCchhHHHHHHHHhhcccCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCcc
Confidence 678889998888888776544446799999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 151 QDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 151 ~Dil~~r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
+|++++|.+|+|+.+..|.++++.+ .+||+|||++.|++|.+||+++++||||+|+++
T Consensus 195 ~Dil~~r~~TiGi~~~~~~~~~v~l----------------------~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 195 QDLLRCRVLTSGIFETKFQVDKVNF----------------------HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp HHHHHCCCCCCSEEEEEEEETTEEE----------------------EEEEECCSGGGGGGGGGGTTTCCEEEEEEETTG
T ss_pred ccccccccceeeeEEEEeecCCccc----------------------eecccchhhhhhhhhHhhccCCCEEEEEEECcc
Confidence 9999999999999999999998888 999999999999999999999999999999999
Q ss_pred hhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCC
Q psy16468 231 YDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPP 310 (463)
Q Consensus 231 ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp 310 (463)
|||++.|+...|+|++++.+|+++++++++.++|++ ||+||+|++.+|+.... +++++|||
T Consensus 253 ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii------------------LvgNK~DL~~~ki~~~~-~~l~~~fp 313 (402)
T 1azs_C 253 YNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI------------------LFLNKQDLLAEKVLAGK-SKIEDYFP 313 (402)
T ss_dssp GGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE------------------EEEECHHHHHHHHHHCS-SCGGGTCG
T ss_pred cccccccccccchHHHHHHHHHHHHhcccCCCCeEE------------------EEEEChhhhhhhhcccc-cchhhccc
Confidence 999999999999999999999999999999999999 99999999999986320 28999999
Q ss_pred CCCC------------CcccHHHHHHHHHHHh-ccCC---CCCCcccccccCCCcc
Q psy16468 311 LHTG------------PQRDAIAAREFILRMT-STGR---DRSARVHSANVRRPQS 350 (463)
Q Consensus 311 ~f~g------------~~~~~~~a~~fi~~~f-~~~~---~~~~~v~~H~vR~~~~ 350 (463)
+|+| ++.++++|.+||.++| ++++ ...+.+|.|.+.....
T Consensus 314 ~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~ 369 (402)
T 1azs_C 314 EFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT 369 (402)
T ss_dssp GGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCH
T ss_pred cccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecC
Confidence 9984 2235789999999999 6542 1235789998876643
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=6.3e-62 Score=498.10 Aligned_cols=297 Identities=29% Similarity=0.488 Sum_probs=262.3
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhcCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHccccCC-------CccCH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYA-------DPTCE 81 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~~~g~s~~E~~~~r~~I~~Nii~~~~~li~a~~~l~i~~~-------~~~~~ 81 (463)
.+.+++||||||+|||||||++||||++|++||+++|++.|+++|+.|++++|+.|++||+.+++++. +++++
T Consensus 5 ~~~~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~ 84 (354)
T 2xtz_A 5 SGIHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESI 84 (354)
T ss_dssp CCCEEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHH
T ss_pred CCCCceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHH
Confidence 35789999999999999999999999999999999999999999999999999999999999987765 34455
Q ss_pred HHHHHHhccccc-ccccCchHHHHHHHhhcCChhHHHHHhhccccccccchhhhhcccceeecCCCCCCccccccccccc
Q psy16468 82 EKAELIRSVDFE-TVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPT 160 (463)
Q Consensus 82 ~~a~~i~~~~~~-~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~e~~L~ds~~Yfl~~l~RI~~~~Y~PT~~Dil~~r~~T 160 (463)
+.++.+...... ....++++++++|..||+||+||+||.|++||+|+||++|||++++||+.++|.||.+|++++|.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T 164 (354)
T 2xtz_A 85 AIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRT 164 (354)
T ss_dssp HHHHHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCC
T ss_pred HHHHHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeecccc
Confidence 556665543211 1346889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeeCC------ceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhh
Q psy16468 161 TGIIEYPFDLEE------IRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQI 234 (463)
Q Consensus 161 ~Gi~e~~f~~~~------~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~ 234 (463)
+|+.++.|.+++ +++ .+||+|||++.|++|.+||+++++||||+|+++|||+
T Consensus 165 ~Gi~e~~f~~~~~~~~~~v~l----------------------~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~ 222 (354)
T 2xtz_A 165 TGVVEIQFSPVGENKKSGEVY----------------------RLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQT 222 (354)
T ss_dssp CSEEEEEECCCCE------EE----------------------EEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCB
T ss_pred cceeeEEEEeccCccccceee----------------------EEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccc
Confidence 999999999853 555 9999999999999999999999999999999999999
Q ss_pred hccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCcccc--CCCC
Q psy16468 235 LFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIV--PPLH 312 (463)
Q Consensus 235 ~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~--fp~f 312 (463)
+.|+.+.|+|++++.+|+++++++++.++|++ |++||+|++++|+... +++.+ ||+|
T Consensus 223 l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------------LvgNK~DL~~~k~~~v---~l~~~~~fp~y 281 (354)
T 2xtz_A 223 LFEDEQKNRMMETKELFDWVLKQPCFEKTSFM------------------LFLNKFDIFEKKVLDV---PLNVCEWFRDY 281 (354)
T ss_dssp CSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEE------------------EEEECHHHHHHHTTTS---CGGGSGGGTTC
T ss_pred cccccchhHHHHHHHHHHHHHhccccCCCeEE------------------EEEECcchhhhhcccc---ccccccccccc
Confidence 99999999999999999999999999999999 9999999999998766 77766 9999
Q ss_pred CCC---cccHHHHHHHHHHHh-cc---CCCC---CCcccccccCCC
Q psy16468 313 TGP---QRDAIAAREFILRMT-ST---GRDR---SARVHSANVRRP 348 (463)
Q Consensus 313 ~g~---~~~~~~a~~fi~~~f-~~---~~~~---~~~v~~H~vR~~ 348 (463)
.+. ++++++|.+|+.++| ++ +..+ .+.+|.|.+...
T Consensus 282 ~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~ 327 (354)
T 2xtz_A 282 QPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTAL 327 (354)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTT
T ss_pred ccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEee
Confidence 842 356899999999999 65 3222 346677766555
No 7
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.90 E-value=2.2e-25 Score=225.28 Aligned_cols=182 Identities=46% Similarity=0.703 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHH
Q psy16468 248 KALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFIL 327 (463)
Q Consensus 248 l~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~ 327 (463)
+..|..++-.+.+.....++.||..+++|+.++.. +. ..+.+... +... -+.|.. .-+++....|
T Consensus 40 ~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~~~~~------~~--~~~~~~~~---~~~~-~~~~~~--e~~~~i~~lW- 104 (327)
T 3ohm_A 40 KRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHN------KA--HAQLVREV---DVEK-VSAFEN--PYVDAIKSLW- 104 (327)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSTHH------HH--HHHHHHTC---CGGG-CCCCCT--THHHHHHHHH-
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCchh------HH--HHHHHhcc---cccc-cccccH--HHHHHHHHHH-
Confidence 34444444444445567778899999999987621 10 11111111 0000 011221 2356777777
Q ss_pred HHhccCCCCCCcccccccCCCccccccccccccccchhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC----
Q psy16468 328 RMTSTGRDRSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD---- 403 (463)
Q Consensus 328 ~~f~~~~~~~~~v~~H~vR~~~~~~~~~~~~~~~~~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~---- 403 (463)
.+.+|+..+.|+.++.+.++ +.|||++++||+.++|.||++||||+|++|+|+.|..|+++
T Consensus 105 --------~d~~iq~~~~r~~e~~l~d~-------~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~~~~~~~v~l 169 (327)
T 3ohm_A 105 --------NDPGIQECYDRRREYQLSDS-------TKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIF 169 (327)
T ss_dssp --------TCHHHHHHHHGGGGSCCCTT-------HHHHHTTHHHHHSTTCCCCHHHHTTCCCCCCSEEEEEEEETTEEE
T ss_pred --------cCHHHHHHHHccccceeccc-------HHHHHHHHHHHhccCCCccccchhcccCceeeEEEEEEEeeceee
Confidence 57788887777765544444 89999999999999999999999999999999999998653
Q ss_pred ------------------------------------------CchhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhh
Q psy16468 404 ------------------------------------------GINRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEE 441 (463)
Q Consensus 404 ------------------------------------------~~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~ 441 (463)
..|||+||+.+|+++++++||.++|+|||+||.|++++
T Consensus 170 ~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 170 RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp EEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHH
T ss_pred EEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhh
Confidence 24799999999999999999999999999999999999
Q ss_pred hhccCCccccCCcCCCCC
Q psy16468 442 KIMYSHLVDYFPEYDDHI 459 (463)
Q Consensus 442 Ki~~~~l~~~Fp~y~g~~ 459 (463)
|++.+|+.+|||+|+|+.
T Consensus 250 ki~~~~l~~~fp~y~g~~ 267 (327)
T 3ohm_A 250 KIMYSHLVDYFPEYDGPQ 267 (327)
T ss_dssp HTTTSCGGGTCTTCCSCS
T ss_pred hhccchHhhhchhccCCC
Confidence 999999999999999964
No 8
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.88 E-value=1.8e-24 Score=219.48 Aligned_cols=181 Identities=23% Similarity=0.263 Sum_probs=139.0
Q ss_pred HHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHH
Q psy16468 248 KALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFIL 327 (463)
Q Consensus 248 l~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~ 327 (463)
+..|..++-.+.+.....++.||..+.+|+.++.....+ .+. . . .. +.|. +.-+++....|
T Consensus 38 ~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~~~~~~~~~---~~~-----~-~---~~----~~~~--~~~~~~i~~lW- 98 (340)
T 4fid_A 38 RATHKSSICSNVVTCMRTLIEQSAILNHPMKYQPKSKEF---TTE-----D-P---VT----LPFS--PELVGDVEALW- 98 (340)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCSGGG---SCC-----S-C---CC----SSCC--TTHHHHHHHHH-
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCChhhHHHH---hhc-----c-c---CC----CCCC--HHHHHHHHHHH-
Confidence 444444444444455677788888899999887332111 110 0 0 11 1121 12356677777
Q ss_pred HHhccCCCCCCcccccccCCCccccccccccccccchhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC----
Q psy16468 328 RMTSTGRDRSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD---- 403 (463)
Q Consensus 328 ~~f~~~~~~~~~v~~H~vR~~~~~~~~~~~~~~~~~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~---- 403 (463)
.+.+|+..+.|+.++.+.++ +.|||++++||+.++|.||++|||++|++|+|+.+..|.++
T Consensus 99 --------~d~~iq~~~~r~~e~~l~d~-------~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~v~l 163 (340)
T 4fid_A 99 --------ADEGIQATYEESAKFQLPDC-------AKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDFVVKDIPF 163 (340)
T ss_dssp --------HSHHHHHHHHTCTTSCCCTT-------HHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEEESSSCEE
T ss_pred --------cCHHHHHHHHhcccccccch-------hhhHHHHHHHHhcccCCccccceeecccceeeeEEEEEEeeeeee
Confidence 46788888877776555544 89999999999999999999999999999999999998653
Q ss_pred ------------------------------------------CchhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhh
Q psy16468 404 ------------------------------------------GINRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEE 441 (463)
Q Consensus 404 ------------------------------------------~~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~ 441 (463)
..|||.+++.+|+++++++||.++|+|||+||.||+++
T Consensus 164 ~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 164 HLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp EEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHH
T ss_pred ccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhh
Confidence 24799999999999999999999999999999999999
Q ss_pred hhccCCccccCCcCCCCCCcC
Q psy16468 442 KIMYSHLVDYFPEYDDHIIIE 462 (463)
Q Consensus 442 Ki~~~~l~~~Fp~y~g~~~~~ 462 (463)
|+..+++.+|||+|+|+++.|
T Consensus 244 ki~~~~l~~~fp~y~g~~~~e 264 (340)
T 4fid_A 244 KLTKVPLNTIFPEYTGGDNAV 264 (340)
T ss_dssp HHHHSCGGGTCTTCCCTTCHH
T ss_pred hcCcchHHHhhhhhcCCCCHH
Confidence 999999999999999987653
No 9
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=1.1e-22 Score=208.34 Aligned_cols=116 Identities=42% Similarity=0.729 Sum_probs=103.6
Q ss_pred CCCcccccccCCCccccccccccccccchhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC------------
Q psy16468 336 RSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD------------ 403 (463)
Q Consensus 336 ~~~~v~~H~vR~~~~~~~~~~~~~~~~~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~------------ 403 (463)
.+.+|+..+.|+.++.++++ +.|||++++||+.|+|+||.+||+++|++|+||.+..|.++
T Consensus 139 ~d~~iq~~~~r~~e~~l~ds-------~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq 211 (362)
T 1zcb_A 139 EDSGIQNAYDRRREFQLGES-------VKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQ 211 (362)
T ss_dssp HCHHHHHHHHTGGGSCCCTT-------HHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEETTEEEEEEEECC-
T ss_pred CCHHHHHHHHhcchhhhccc-------HHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEeeeCCeEEEEEeccch
Confidence 46677777777765554444 89999999999999999999999999999999999887643
Q ss_pred ------------------------C----------chhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhhhhccCCcc
Q psy16468 404 ------------------------G----------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLV 449 (463)
Q Consensus 404 ------------------------~----------~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~Ki~~~~l~ 449 (463)
. .|||++|+.+|+++++++||.++|+|||+||.||+++|+..+||+
T Consensus 212 ~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~ 291 (362)
T 1zcb_A 212 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIK 291 (362)
T ss_dssp ------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGG
T ss_pred hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchh
Confidence 2 579999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCC
Q psy16468 450 DYFPEYDDH 458 (463)
Q Consensus 450 ~~Fp~y~g~ 458 (463)
+|||+|+|+
T Consensus 292 ~~fp~y~g~ 300 (362)
T 1zcb_A 292 DYFLEFEGD 300 (362)
T ss_dssp GTCTTCCSC
T ss_pred hcCccccCC
Confidence 999999996
No 10
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.84 E-value=1.4e-21 Score=199.60 Aligned_cols=185 Identities=31% Similarity=0.433 Sum_probs=131.0
Q ss_pred HHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHH
Q psy16468 248 KALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFIL 327 (463)
Q Consensus 248 l~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~ 327 (463)
+..|..++..+.+.....++.||..+.+++.++... . ..+.+.... ..... ..| ++.-++.....|
T Consensus 65 ~~~~~~~i~~N~~~~~~~l~~~~~~~~i~~~~~~~~------~--~~~~~~~~~-~~~~~--~~~--~~~~~~~i~~lw- 130 (353)
T 1cip_A 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARA------D--DARQLFVLA-GAAEE--GFM--TAELAGVIKRLW- 130 (353)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHTCCCSSTTHH------H--HHHHHHHHH-HHHTT--TCC--CHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchH------H--HHHHHHhhc-ccccc--ccC--CHHHHHHHHHHH-
Confidence 344444444444444556667777777887765211 0 011111110 00000 111 112245555555
Q ss_pred HHhccCCCCCCcccccccCCCccccccccccccccchhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC----
Q psy16468 328 RMTSTGRDRSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD---- 403 (463)
Q Consensus 328 ~~f~~~~~~~~~v~~H~vR~~~~~~~~~~~~~~~~~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~---- 403 (463)
.+.+|+..+.|+.++.+.++ +.|||++++||+.++|+||.+|||++|++|+||.+..|.++
T Consensus 131 --------~d~~iq~~~~~~~e~~l~ds-------a~yfl~~~~ri~~~~Y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~l 195 (353)
T 1cip_A 131 --------KDSGVQACFNRSREYQLNDS-------AAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHF 195 (353)
T ss_dssp --------HCHHHHHHHTTGGGSCCCTT-------HHHHHTTHHHHTSTTCCCCHHHHHTCCCCCCSEEEEEEEETTEEE
T ss_pred --------CCHHHHHHHHhhhhcccCcc-------HHHHHHHHHHHhcCCCCCCccccccccCceeceEEEEEeeCCeeE
Confidence 35667776766655444333 89999999999999999999999999999999999888653
Q ss_pred --------------------------------C----------chhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhh
Q psy16468 404 --------------------------------G----------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEE 441 (463)
Q Consensus 404 --------------------------------~----------~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~ 441 (463)
. .|||++++.+|+++++++||.++|+|||+||.||+++
T Consensus 196 ~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ 275 (353)
T 1cip_A 196 KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE 275 (353)
T ss_dssp EEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred EEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhh
Confidence 1 4789999999999999999999999999999999999
Q ss_pred hhccCCccccCCcCCCCCCc
Q psy16468 442 KIMYSHLVDYFPEYDDHIII 461 (463)
Q Consensus 442 Ki~~~~l~~~Fp~y~g~~~~ 461 (463)
|+..+||++|||+|+|+.+.
T Consensus 276 ki~~~~l~~~fp~~~g~~~~ 295 (353)
T 1cip_A 276 KIKKSPLTICYPEYAGSNTY 295 (353)
T ss_dssp HHTTSCGGGTCTTCCSCSCH
T ss_pred hccccchhhcccccCCCCCH
Confidence 99999999999999997654
No 11
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=1.4e-20 Score=194.94 Aligned_cols=114 Identities=39% Similarity=0.688 Sum_probs=100.3
Q ss_pred CCCcccccccCCCcccccccccccccc-chhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC-----------
Q psy16468 336 RSARVHSANVRRPQSGLGENHLLALHV-RHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD----------- 403 (463)
Q Consensus 336 ~~~~v~~H~vR~~~~~~~~~~~~~~~~-~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~----------- 403 (463)
.+.+|+..+.|+.+ ++++| ++|||++++||+.++|+||.+|++++|++|+||.+..|.++
T Consensus 155 ~d~~iq~~~~r~~e--------~~l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~v~l~iwDtaG 226 (402)
T 1azs_C 155 EDEGVRACYERSNE--------YQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGG 226 (402)
T ss_dssp HCHHHHHHHTTGGG--------SCCCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCCCSEEEEEEEETTEEEEEEEECC
T ss_pred cCHHHHHHHHhccc--------ceeccchhhHHHHHHHhhccccCCccccccccccceeeeEEEEeecCCccceecccch
Confidence 45677777777654 45555 89999999999999999999999999999999999877642
Q ss_pred -------------------------C----------chhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhhhhc--cC
Q psy16468 404 -------------------------G----------INRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIM--YS 446 (463)
Q Consensus 404 -------------------------~----------~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~Ki~--~~ 446 (463)
+ .|+|++++.+|+++++++|+.++|+|||+||.||+.+|+. .+
T Consensus 227 Qe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~ 306 (402)
T 1azs_C 227 QRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKS 306 (402)
T ss_dssp SGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSS
T ss_pred hhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhccccc
Confidence 2 5789999999999999999999999999999999999995 56
Q ss_pred CccccCCcCCC
Q psy16468 447 HLVDYFPEYDD 457 (463)
Q Consensus 447 ~l~~~Fp~y~g 457 (463)
+|++|||+|+|
T Consensus 307 ~l~~~fp~y~~ 317 (402)
T 1azs_C 307 KIEDYFPEFAR 317 (402)
T ss_dssp CGGGTCGGGGT
T ss_pred chhhccccccc
Confidence 89999999985
No 12
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.78 E-value=6.4e-20 Score=187.32 Aligned_cols=114 Identities=32% Similarity=0.555 Sum_probs=99.3
Q ss_pred CCCcccccccCCCccccccccccccccchhhhccccccCCCCCCCChhhHhhcccCCCceeEEEEeeC------------
Q psy16468 336 RSARVHSANVRRPQSGLGENHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD------------ 403 (463)
Q Consensus 336 ~~~~v~~H~vR~~~~~~~~~~~~~~~~~~yfl~~l~ri~~~~Y~Pt~~Dil~~R~~T~gi~e~~f~~~------------ 403 (463)
.+.+|+..+.|+.++.+.++ +.|||++++||+.++|+||.+|++++|++|+||.|+.|.++
T Consensus 115 ~D~~vq~~~~r~~e~~l~d~-------~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~i 187 (354)
T 2xtz_A 115 KDPAIQETCARGNELQVPDC-------TKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187 (354)
T ss_dssp TCHHHHHHHTTGGGTTCCTT-------HHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEE
T ss_pred CCHHHHHHHHhcchhhhhcc-------HHHHHHHHHHHhcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEE
Confidence 56788877777665544444 89999999999999999999999999999999999887641
Q ss_pred ----------------------------------------CchhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhhhhh
Q psy16468 404 ----------------------------------------GINRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKI 443 (463)
Q Consensus 404 ----------------------------------------~~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~~Ki 443 (463)
..|+|++++.+|+++++++|+.++|+|||+||.||+++|+
T Consensus 188 wDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~ 267 (354)
T 2xtz_A 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKV 267 (354)
T ss_dssp EEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHT
T ss_pred EECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhc
Confidence 2368999999999999999999999999999999999999
Q ss_pred ccCCcccc--CCcCC
Q psy16468 444 MYSHLVDY--FPEYD 456 (463)
Q Consensus 444 ~~~~l~~~--Fp~y~ 456 (463)
..++++.+ ||+|.
T Consensus 268 ~~v~l~~~~~fp~y~ 282 (354)
T 2xtz_A 268 LDVPLNVCEWFRDYQ 282 (354)
T ss_dssp TTSCGGGSGGGTTCC
T ss_pred ccccccccccccccc
Confidence 88888755 99997
No 13
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.28 E-value=6.8e-11 Score=104.92 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=74.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++++++||+|+++. ..+.+....+..++......+.|++
T Consensus 54 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~pii----------- 112 (171)
T 1upt_A 54 QVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDR----------DRIGISKSELVAMLEEEELRKAILV----------- 112 (171)
T ss_dssp EEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCC----------TTHHHHHHHHHHHHTCGGGTTCEEE-----------
T ss_pred EEEECCCChhhhHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchhhCCCEEE-----------
Confidence 9999999998899999999999999999998742 3466677788888877666789999
Q ss_pred cccccceeeecchhhhch----hhhhhccC-Ccc----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQ----YNVILNCM-NYT----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e----ki~~~~~~-~l~----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+ .+...... .+. .+|+--.-...+++++.+++.+..
T Consensus 113 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 113 -------VFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp -------EEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 99999998653 12111000 000 233333333346788888876654
No 14
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.21 E-value=1.6e-10 Score=105.02 Aligned_cols=105 Identities=15% Similarity=0.253 Sum_probs=76.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.+++++|||+|+++ ...+.+....+..++......+.|++
T Consensus 69 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 127 (189)
T 2x77_A 69 EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD----------RDRMGVAKHELYALLDEDELRKSLLL----------- 127 (189)
T ss_dssp EEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC----------CTTHHHHHHHHHHHHTCSTTTTCEEE-----------
T ss_pred EEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhhhhcCCCeEE-----------
Confidence 999999999889999999999999999999874 24567777888888887777789999
Q ss_pred cccccceeeecchhhhch----hhhhhccC-Ccc----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQ----YNVILNCM-NYT----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e----ki~~~~~~-~l~----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+ .+...... .+. .+|+--.-...+++++.+++.+..
T Consensus 128 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 128 -------IFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp -------EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 99999999753 22221000 000 234433333456888888887766
No 15
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.19 E-value=7.3e-11 Score=107.33 Aligned_cols=70 Identities=26% Similarity=0.459 Sum_probs=59.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++++++||+|+++ ..++.+....+..++......+.|++
T Consensus 63 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 121 (181)
T 1fzq_A 63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEEKLSCVPVL----------- 121 (181)
T ss_dssp EEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCGGGTTCCEE-----------
T ss_pred EEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhChhhcCCCEE-----------
Confidence 899999999889999999999999999999873 34566677777888776556789999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 122 -------lv~NK~Dl~~~ 132 (181)
T 1fzq_A 122 -------IFANKQDLLTA 132 (181)
T ss_dssp -------EEEECTTSTTC
T ss_pred -------EEEECcCcccC
Confidence 99999998653
No 16
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.18 E-value=1.1e-10 Score=106.37 Aligned_cols=86 Identities=28% Similarity=0.446 Sum_probs=69.4
Q ss_pred cccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccC
Q psy16468 159 PTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFES 238 (463)
Q Consensus 159 ~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~ 238 (463)
+|.|+....+.+++..+ .+||++|+...+..|..++.+++++|||+|+++
T Consensus 53 ~t~~~~~~~~~~~~~~~----------------------~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~-------- 102 (190)
T 2h57_A 53 PTIGFSIEKFKSSSLSF----------------------TVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD-------- 102 (190)
T ss_dssp CCSSEEEEEEECSSCEE----------------------EEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC--------
T ss_pred CccceeEEEEEECCEEE----------------------EEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC--------
Confidence 45566666667766666 999999999999999999999999999999874
Q ss_pred CccchHHHHHHHHHHHhcCCCC--CCCeeEecCCccccccccccccceeeecchhhhc
Q psy16468 239 ENENRMEESKALFKTIITYPWF--QHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 239 ~~~nr~~esl~lf~~i~~~~~~--~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
...+.+....+..+.....+ .+.|++ +++||+|+..
T Consensus 103 --~~s~~~~~~~~~~~~~~~~~~~~~~pii------------------lv~nK~Dl~~ 140 (190)
T 2h57_A 103 --RLRMVVAKEELDTLLNHPDIKHRRIPIL------------------FFANKMDLRD 140 (190)
T ss_dssp --HHHHHHHHHHHHHHHHSTTTTTSCCCEE------------------EEEECTTSTT
T ss_pred --HHHHHHHHHHHHHHHhChhhccCCCeEE------------------EEEeCcCccc
Confidence 23466667777888777666 688999 9999999865
No 17
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.18 E-value=2.4e-10 Score=103.48 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=74.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++++++||+|+++ ...+.+....+..++......+.|++
T Consensus 65 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 123 (186)
T 1ksh_A 65 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEERLAGATLL----------- 123 (186)
T ss_dssp EEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTTCEEE-----------
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhChhcCCCcEE-----------
Confidence 999999998889999999999999999999874 34466777788888877666789999
Q ss_pred cccccceeeecchhhhchh----hhhhcc-----CCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY----NVILNC-----MNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek----i~~~~~-----~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+. +..... ..-..+|+--.-...+++++.+++.+..
T Consensus 124 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 124 -------IFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp -------EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 999999986532 111100 0001233333333346777777776655
No 18
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.18 E-value=2.5e-10 Score=104.70 Aligned_cols=69 Identities=23% Similarity=0.451 Sum_probs=58.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|.+++.+++++|||+|+++ ...+++....+..+.......+.|++
T Consensus 70 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 128 (190)
T 1m2o_B 70 TTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAELKDVPFV----------- 128 (190)
T ss_dssp EEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTTCCEE-----------
T ss_pred EEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHcchhhcCCCEE-----------
Confidence 999999999999999999999999999999874 34566777778888776556789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 129 -------lv~NK~Dl~~ 138 (190)
T 1m2o_B 129 -------ILGNKIDAPN 138 (190)
T ss_dssp -------EEEECTTSTT
T ss_pred -------EEEECCCCcC
Confidence 9999999864
No 19
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.16 E-value=3e-10 Score=100.20 Aligned_cols=105 Identities=18% Similarity=0.287 Sum_probs=73.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++++++||+|+++ ...+.+....+..+.......+.|++
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 105 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDELRDAVLL----------- 105 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTTCEEE-----------
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhhcCCeEE-----------
Confidence 999999998888899999999999999999874 23466677778888877667789999
Q ss_pred cccccceeeecchhhhch----hhhhhccCC-cc----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQ----YNVILNCMN-YT----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e----ki~~~~~~~-l~----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+ .+....... +. .+++--.-...+++++.++|.+..
T Consensus 106 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 106 -------VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp -------EEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred -------EEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999998653 121110000 00 123322223346788888876654
No 20
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.15 E-value=2.5e-10 Score=103.37 Aligned_cols=69 Identities=20% Similarity=0.358 Sum_probs=58.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..++......+.|++
T Consensus 68 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 126 (181)
T 2h17_A 68 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHEDLRKAGLL----------- 126 (181)
T ss_dssp EEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTCGGGTTCEEE-----------
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhhCCCeEE-----------
Confidence 999999999889999999999999999999874 24566777778888876556789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 127 -------lv~NK~Dl~~ 136 (181)
T 2h17_A 127 -------IFANKQDVKE 136 (181)
T ss_dssp -------EEEECTTSTT
T ss_pred -------EEEECCCccc
Confidence 9999999865
No 21
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.14 E-value=1.8e-10 Score=106.44 Aligned_cols=69 Identities=25% Similarity=0.418 Sum_probs=55.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++|||+|+++ ..++.+....+..+.......+.|++
T Consensus 72 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 130 (198)
T 1f6b_A 72 TTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDETIANVPIL----------- 130 (198)
T ss_dssp EEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTTSCEE-----------
T ss_pred EEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcccCCCcEE-----------
Confidence 899999999889999999999999999999873 34566777778888776556789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 131 -------lv~NK~Dl~~ 140 (198)
T 1f6b_A 131 -------ILGNKIDRPE 140 (198)
T ss_dssp -------EEEECTTSTT
T ss_pred -------EEEECCCccc
Confidence 9999999854
No 22
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.14 E-value=2.8e-10 Score=104.59 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=69.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+.......+.|++
T Consensus 76 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~l~~~~~~~~~~~~pii----------- 134 (192)
T 2b6h_A 76 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVQESADELQKMLQEDELRDAVLL----------- 134 (192)
T ss_dssp EEEECC-----CTTHHHHHHTCCEEEEEEETTCG----------GGHHHHHHHHHHHHTCGGGTTCEEE-----------
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHhcccccCCCeEE-----------
Confidence 9999999988889999999999999999998742 3466677778888877666789999
Q ss_pred cccccceeeecchhhhch----hhhhhccCC-c----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQ----YNVILNCMN-Y----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e----ki~~~~~~~-l----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+ .+....... . ..+++--.-...+++++.++|.++.
T Consensus 135 -------lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 135 -------VFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp -------EEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred -------EEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 99999998653 122110000 0 0133322223346788888876654
No 23
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.13 E-value=4.2e-10 Score=102.62 Aligned_cols=105 Identities=16% Similarity=0.260 Sum_probs=73.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..++......+.|++
T Consensus 70 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 128 (188)
T 1zd9_A 70 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQLQGIPVL----------- 128 (188)
T ss_dssp EEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTTCCEE-----------
T ss_pred EEEECCCCHhHHHHHHHHHccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcccCCCCEE-----------
Confidence 899999998888999999999999999999874 24566677778888876556789999
Q ss_pred cccccceeeecchhhhch----hhhhhccC-----CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQ----YNVILNCM-----NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e----ki~~~~~~-----~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+ .+...... .-..+|+--.-...+++++.++|.+..
T Consensus 129 -------lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 129 -------VLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp -------EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred -------EEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999998643 22111000 001233322222346788888886654
No 24
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.13 E-value=1.4e-10 Score=104.45 Aligned_cols=69 Identities=22% Similarity=0.396 Sum_probs=55.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++++++||+|+++ ...+++....+..+.......+.|++
T Consensus 65 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 123 (183)
T 1moz_A 65 NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEEELQDAALL----------- 123 (183)
T ss_dssp EEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTSSTTSSCEEE-----------
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChhhCCCeEE-----------
Confidence 999999999889999999999999999999873 24566777788888877666789999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 124 -------lv~nK~Dl~~ 133 (183)
T 1moz_A 124 -------VFANKQDQPG 133 (183)
T ss_dssp -------EEEECTTSTT
T ss_pred -------EEEECCCCCC
Confidence 9999999865
No 25
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.12 E-value=2.9e-10 Score=103.71 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=73.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCC-------CCCeeEecCC
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWF-------QHSMVDVGGQ 270 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~-------~~~~il~~~~ 270 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..++....+ .+.|++
T Consensus 66 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii---- 131 (199)
T 4bas_A 66 TVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH----------LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL---- 131 (199)
T ss_dssp EEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE----
T ss_pred EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcH----------HHHHHHHHHHHHHHhChhhhhcccccCCCCEE----
Confidence 9999999999999999999999999999998842 3456666677777765333 278999
Q ss_pred ccccccccccccceeeecchhhhchh----hhhhcc------CCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 271 RSERRKWIHCFENVTFCNSVQLFSQY----NVILNC------MNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 271 ~~~~v~~~~~~~~~l~lNK~D~~~ek----i~~~~~------~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+. +..... ..-..+|+--.-...+++++.++|.+..
T Consensus 132 --------------lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 132 --------------FFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp --------------EEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred --------------EEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 999999987652 211100 0001234333333456889999988877
No 26
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=8.5e-10 Score=100.18 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=71.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++ ...+++....+..+.......+.|++
T Consensus 63 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pii----------- 121 (187)
T 1zj6_A 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHEDLRKAGLL----------- 121 (187)
T ss_dssp EEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSGGGTTCEEE-----------
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhchhhCCCeEE-----------
Confidence 999999998889999999999999999999874 23566777778888876555689999
Q ss_pred cccccceeeecchhhhch----hhhhhcc-CCcc----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQ----YNVILNC-MNYT----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e----ki~~~~~-~~l~----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+ .+..... ..+. .+|+--.-...+++++.++|.+..
T Consensus 122 -------lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 122 -------IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp -------EEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred -------EEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 99999998652 1211100 0011 233332333346888888888776
No 27
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.07 E-value=1.7e-09 Score=114.14 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=91.1
Q ss_pred cccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccC
Q psy16468 159 PTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFES 238 (463)
Q Consensus 159 ~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~ 238 (463)
||.|+....+.+++..+ .+||++||...+..|..++++++++|||+|+++
T Consensus 352 ~T~~~~~~~~~~~~~~~----------------------~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~-------- 401 (497)
T 3lvq_E 352 PTVGFNVETVTYKNVKF----------------------NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD-------- 401 (497)
T ss_dssp CCSSEEEEEEESSSCEE----------------------EEEEECCCGGGSGGGGGGGTTCCEEEEEEETTC--------
T ss_pred CccceeEEEEEeCCEEE----------------------EEEECCCcHHHHHHHHHHhccCCEEEEEEECcc--------
Confidence 36677777777777777 999999999999999999999999999999884
Q ss_pred CccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhch----hhhhhccCCc-----cccC
Q psy16468 239 ENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQ----YNVILNCMNY-----TIVP 309 (463)
Q Consensus 239 ~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~e----ki~~~~~~~l-----~~~f 309 (463)
..++.+....+..++......+.|++ +++||+|+..+ .+........ ..++
T Consensus 402 --~~s~~~~~~~~~~~~~~~~~~~~p~i------------------lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (497)
T 3lvq_E 402 --RDRIDEARQELHRIINDREMRDAIIL------------------IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 461 (497)
T ss_dssp --GGGHHHHHHHHHHHHTSGGGTTCEEE------------------EEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEE
T ss_pred --hhHHHHHHHHHHHHhhhhhcCCCcEE------------------EEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEE
Confidence 34677888888999988888899999 99999998543 1211100010 0133
Q ss_pred CCCCCCcccHHHHHHHHHHHh
Q psy16468 310 PLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 310 p~f~g~~~~~~~a~~fi~~~f 330 (463)
+--.-....++++.++|.+.+
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 333333357899999998887
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.05 E-value=2.1e-09 Score=94.70 Aligned_cols=68 Identities=9% Similarity=0.147 Sum_probs=50.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++-+ .+++....+..+.... .+.|++
T Consensus 57 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~--~~~pii----------- 113 (168)
T 1z2a_A 57 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE----------SFEAISSWREKVVAEV--GDIPTA----------- 113 (168)
T ss_dssp EEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHH----------HHHTHHHHHHHHHHHH--CSCCEE-----------
T ss_pred EEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhC--CCCCEE-----------
Confidence 89999999888889999999999999999988532 1222222333333221 468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+..+
T Consensus 114 -------lv~nK~Dl~~~ 124 (168)
T 1z2a_A 114 -------LVQNKIDLLDD 124 (168)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECcccCcc
Confidence 99999998753
No 29
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.01 E-value=6.4e-10 Score=97.95 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=52.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++-+ .+++....++.+.......+.|++
T Consensus 54 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii----------- 112 (167)
T 1c1y_A 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS----------TFNDLQDLREQILRVKDTEDVPMI----------- 112 (167)
T ss_dssp EEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCCSCCCEE-----------
T ss_pred EEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCcCCCcEE-----------
Confidence 89999999888889999999999999999988532 223333344444433234578999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 113 -------lv~nK~Dl~~~ 123 (167)
T 1c1y_A 113 -------LVGNKCDLEDE 123 (167)
T ss_dssp -------EEEECTTCGGG
T ss_pred -------EEEECcccccc
Confidence 99999998654
No 30
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=1.9e-09 Score=97.72 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=69.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+....+..+.......+.|++
T Consensus 67 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~i----------- 125 (195)
T 1x3s_A 67 AIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD----------TFVKLDNWLNELETYCTRNDIVNM----------- 125 (195)
T ss_dssp EEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHH----------HHHTHHHHHHHHTTCCSCSCCEEE-----------
T ss_pred EEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCcCCCcEE-----------
Confidence 89999999988999999999999999999987532 233344455666554444678999
Q ss_pred cccccceeeecchhhhchhhhhhc----cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN----CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~----~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+....+.... +... ..+|+--.-...+++++.++|.+..
T Consensus 126 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 126 -------LVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp -------EEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999998543321100 0000 1233322223346778888887766
No 31
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.97 E-value=4.4e-09 Score=93.88 Aligned_cols=72 Identities=7% Similarity=0.032 Sum_probs=43.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-.. ...+.+-+..+..........+.|++
T Consensus 61 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~p~i----------- 122 (182)
T 1ky3_A 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS-------FENIKSWRDEFLVHANVNSPETFPFV----------- 122 (182)
T ss_dssp EEECCC----------CCSTTCCEEEEEEETTCHHH-------HHTHHHHHHHHHHHHCCSCTTTCCEE-----------
T ss_pred EEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH-------HHHHHHHHHHHHHHhcccCcCCCcEE-----------
Confidence 899999998888999999999999999999885431 12223333334444444444678999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 123 -------lv~nK~Dl~~ 132 (182)
T 1ky3_A 123 -------ILGNKIDAEE 132 (182)
T ss_dssp -------EEEECTTSCG
T ss_pred -------EEEECCcccc
Confidence 9999999853
No 32
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.97 E-value=5.4e-09 Score=93.17 Aligned_cols=108 Identities=11% Similarity=0.024 Sum_probs=67.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++-.. ...+..-+..+..........+.|++
T Consensus 59 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~p~i----------- 120 (177)
T 1wms_A 59 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS-------FQNLSNWKKEFIYYADVKEPESFPFV----------- 120 (177)
T ss_dssp EEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHTCSCTTTSCEE-----------
T ss_pred EEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH-------HHHHHHHHHHHHHHccccccCCCcEE-----------
Confidence 899999999889999999999999999999885431 12233334444445544444678999
Q ss_pred cccccceeeecchhhhchhhhhhc----c--CCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN----C--MNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~----~--~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+......... + ..-..+|+--.-...+++++.+++.+..
T Consensus 121 -------~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 121 -------ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp -------EEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998632221100 0 0111233333333345677777776554
No 33
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.96 E-value=4.4e-09 Score=96.79 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=68.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++- ..+.+....+..+.....-.+.|++
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~pii----------- 133 (201)
T 3oes_A 75 HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSL----------HSFQVIESLYQKLHEGHGKTRVPVV----------- 133 (201)
T ss_dssp EEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCH----------HHHHHHHHHHHHHHC-----CCCEE-----------
T ss_pred EEEECCCccchHHHHHHHHhcCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 8999999998899999999999999999998843 3445555666666665445578999
Q ss_pred cccccceeeecchhhhchhhhhh-c----cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVIL-N----CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~-~----~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+..++-... . +..+ ..+|+--.-...+++++.++|.+..
T Consensus 134 -------lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 134 -------LVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp -------EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred -------EEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999865432110 0 0000 1233333333346777777777766
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.96 E-value=4.7e-09 Score=93.94 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=51.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+++....+..+.... -.+.|++
T Consensus 64 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~i----------- 121 (181)
T 2efe_B 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ----------ASFERAKKWVQELQAQG-NPNMVMA----------- 121 (181)
T ss_dssp EEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEE-----------
T ss_pred EEEeCCCChhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcEE-----------
Confidence 8999999998899999999999999999998743 22334444445544332 2468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 122 -------~v~nK~Dl~~ 131 (181)
T 2efe_B 122 -------LAGNKSDLLD 131 (181)
T ss_dssp -------EEEECTTCTT
T ss_pred -------EEEECCcccc
Confidence 9999999864
No 35
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.96 E-value=2e-09 Score=97.48 Aligned_cols=108 Identities=12% Similarity=0.026 Sum_probs=64.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++. ...+ ....+.+....+..+ .....+.|++
T Consensus 77 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~--~~~~--~~~s~~~l~~~l~~~--~~~~~~~pii----------- 139 (198)
T 3t1o_A 77 HLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN--RLRA--NAESMRNMRENLAEY--GLTLDDVPIV----------- 139 (198)
T ss_dssp EEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGG--GHHH--HHHHHHHHHHHHHHT--TCCTTSSCEE-----------
T ss_pred EEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcc--hhhH--hHHHHHHHHHHHHhh--ccccCCCCEE-----------
Confidence 8999999999999999999999999999998832 1110 011122222222222 1334678999
Q ss_pred cccccceeeecchhhhchhh----hhhccC--CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN----VILNCM--NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki----~~~~~~--~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+.. ... +. ....+|+--.-...+++++.++|.+..
T Consensus 140 -------lv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 140 -------IQVNKRDLPDALPVEMVRAV-VDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -------EEEECTTSTTCCCHHHHHHH-HCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------EEEEchhcccccCHHHHHHH-HHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 9999999865311 111 00 111222222222345778887777665
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.95 E-value=4.4e-09 Score=94.30 Aligned_cols=105 Identities=9% Similarity=0.045 Sum_probs=68.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++.+ .+.+....+..+.......+.|++
T Consensus 69 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii----------- 127 (187)
T 2a9k_A 69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFL----------- 127 (187)
T ss_dssp EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCCTTCCEE-----------
T ss_pred EEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 89999999888889999999999999999988532 334444444555543334578999
Q ss_pred cccccceeeecchhhhchh-hhhh----ccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVIL----NCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~~----~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++ +... .+..+ ..+|+--.-...+++++.++|.++.
T Consensus 128 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 128 -------LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp -------EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 999999986532 1100 00000 1233332333346778888777665
No 37
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.95 E-value=1.8e-09 Score=94.74 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=51.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++-+ .+.+....+..+.......+.|++
T Consensus 55 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii----------- 113 (168)
T 1u8z_A 55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFL----------- 113 (168)
T ss_dssp EEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCCTTSCEE-----------
T ss_pred EEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEE-----------
Confidence 89999999888889999999999999999988532 233444444555444334578999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 114 -------lv~nK~Dl~~~ 124 (168)
T 1u8z_A 114 -------LVGNKSDLEDK 124 (168)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECcccccc
Confidence 99999998653
No 38
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.95 E-value=4.1e-09 Score=92.35 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=54.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++- ..+++....+..+.......+.|++
T Consensus 54 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~pii----------- 112 (167)
T 1kao_A 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ----------QSFQDIKPMRDQIIRVKRYEKVPVI----------- 112 (167)
T ss_dssp EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTTSCCCEE-----------
T ss_pred EEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 8999999988888899999999999999998843 2334445555555544334578999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 113 -------lv~nK~Dl~~~ 123 (167)
T 1kao_A 113 -------LVGNKVDLESE 123 (167)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECCccccc
Confidence 99999998653
No 39
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.94 E-value=5.7e-09 Score=93.98 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=49.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+....+..+.... -.+.|++
T Consensus 62 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~pii----------- 119 (186)
T 2bme_A 62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE----------TYNALTNWLTDARMLA-SQNIVII----------- 119 (186)
T ss_dssp EEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHS-CTTCEEE-----------
T ss_pred EEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhc-CCCCcEE-----------
Confidence 89999999888889999999999999999988532 1222222333322211 1468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 120 -------lv~nK~Dl~~ 129 (186)
T 2bme_A 120 -------LCGNKKDLDA 129 (186)
T ss_dssp -------EEEECGGGGG
T ss_pred -------EEEECccccc
Confidence 9999999864
No 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.93 E-value=6.3e-09 Score=93.59 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=66.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+.......+.|++
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i----------- 113 (189)
T 4dsu_A 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT----------KSFEDIHHYREQIKRVKDSEDVPMV----------- 113 (189)
T ss_dssp EEEECCCC---CTTHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSCCCEE-----------
T ss_pred EEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEE-----------
Confidence 7899999998899999999999999999998842 2333444444555443444578999
Q ss_pred cccccceeeecchhhhchhhhhhc----cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN----CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~----~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+......... +..+ ..+|+--.-...+++++.+++.+..
T Consensus 114 -------~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 114 -------LVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp -------EEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998643321110 0000 1233332333346888888887766
No 41
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=98.28 Aligned_cols=105 Identities=9% Similarity=0.060 Sum_probs=68.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++.+ .+......+..+.......+.|++
T Consensus 65 ~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii----------- 123 (206)
T 2bov_A 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFL----------- 123 (206)
T ss_dssp EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHTTCSCCCEE-----------
T ss_pred EEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 89999999888889999999999999999988532 334444455555544334578999
Q ss_pred cccccceeeecchhhhchhh-hh--hc--cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-VI--LN--CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-~~--~~--~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+..++- .. .. +... ..+|+--.-...+++++.++|.+..
T Consensus 124 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 124 -------LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp -------EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999865321 10 00 0000 1233322222346777777777666
No 42
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.91 E-value=4.2e-09 Score=97.12 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=50.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+....+..+.... -.+.|++
T Consensus 77 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~pii----------- 134 (200)
T 2o52_A 77 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE----------TYNSLAAWLTDARTLA-SPNIVVI----------- 134 (200)
T ss_dssp EEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHT-CTTCEEE-----------
T ss_pred EEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhc-CCCCcEE-----------
Confidence 89999999888889999999999999999988532 2222233333333211 1468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 135 -------lv~nK~Dl~~~ 145 (200)
T 2o52_A 135 -------LCGNKKDLDPE 145 (200)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECCCcccc
Confidence 99999998653
No 43
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.91 E-value=2.4e-08 Score=91.57 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=67.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+. ...+..-+..+..........+.|++
T Consensus 60 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~pii----------- 121 (207)
T 1vg8_A 60 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT-------FKTLDSWRDEFLIQASPRDPENFPFV----------- 121 (207)
T ss_dssp EEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHCCSSGGGSCEE-----------
T ss_pred EEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH-------HHHHHHHHHHHHHhcccccCCCCcEE-----------
Confidence 899999998889999999999999999999885321 11222223333333333333568999
Q ss_pred cccccceeeecchhhhchhhhhhc----c--CCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN----C--MNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~----~--~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+......... + ..-..+|+--.-...+++++.++|.+..
T Consensus 122 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 122 -------VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp -------EEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------EEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998643221100 0 0111233332333346788888887665
No 44
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.91 E-value=9.7e-09 Score=94.05 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=50.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHH-HHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK-ALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl-~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+.. .++..+... ..+.|++
T Consensus 71 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~--~~~~p~i---------- 128 (201)
T 2q3h_A 71 QLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPS----------SFQNVSEKWVPEIRCH--CPKAPII---------- 128 (201)
T ss_dssp EEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHH--CSSSCEE----------
T ss_pred EEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHH----------HHHHHHHHHHHHHHHh--CCCCCEE----------
Confidence 79999999888889999999999999999988532 233332 222223221 2378999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 129 --------lv~nK~Dl~~~ 139 (201)
T 2q3h_A 129 --------LVGTQSDLRED 139 (201)
T ss_dssp --------EEEECGGGGGC
T ss_pred --------EEEECHhhhhc
Confidence 99999999763
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.90 E-value=1.4e-08 Score=89.42 Aligned_cols=69 Identities=9% Similarity=0.151 Sum_probs=52.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+.+....+..+.... -.+.|++
T Consensus 55 ~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~pii----------- 112 (170)
T 1ek0_A 55 EIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQ----------SFIKARHWVKELHEQA-SKDIIIA----------- 112 (170)
T ss_dssp EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHS-CTTCEEE-----------
T ss_pred EEEECCCChhhhhhhhhhhccCcEEEEEEecCChH----------HHHHHHHHHHHHHHhc-CCCCcEE-----------
Confidence 89999999988899999999999999999988532 2333334444444322 2468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 113 -------lv~nK~Dl~~~ 123 (170)
T 1ek0_A 113 -------LVGNKIDXLQE 123 (170)
T ss_dssp -------EEEECGGGGGS
T ss_pred -------EEEECCCcccc
Confidence 99999998754
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.89 E-value=1.1e-08 Score=91.25 Aligned_cols=105 Identities=15% Similarity=0.054 Sum_probs=69.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++.+ .+.+....+..++......+.|++
T Consensus 60 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~pii----------- 118 (181)
T 2fn4_A 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ----------SFNEVGKLFTQILRVKDRDDFPVV----------- 118 (181)
T ss_dssp EEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHTSSCCCEE-----------
T ss_pred EEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 88999999888889999999999999999988532 333444455555443334578999
Q ss_pred cccccceeeecchhhhchh-hhhh----ccC-CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVIL----NCM-NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~~----~~~-~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++ +... .+. .-..+|+--.-...+++++.++|.+..
T Consensus 119 -------lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 119 -------LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp -------EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------EEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999987632 1110 000 001234333333346888888887776
No 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.89 E-value=1e-08 Score=92.08 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=64.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++- ..++.....+..+.....-.+.|++
T Consensus 57 ~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i----------- 115 (181)
T 3t5g_A 57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI----------KSFEVIKVIHGKLLDMVGKVQIPIM----------- 115 (181)
T ss_dssp EEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHC----CCEE-----------
T ss_pred EEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 8999999988888999999999999999998843 2333444444555444334568999
Q ss_pred cccccceeeecchhhhchhhhhh-----ccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVIL-----NCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~-----~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++.... .+..+ ..+|+--.-...+++++.+++.+..
T Consensus 116 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 116 -------LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp -------EEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred -------EEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999999854321100 00000 1233333333345677777776665
No 48
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.88 E-value=1.1e-08 Score=92.77 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=64.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+....+..+... .-.+.|++
T Consensus 68 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~p~i----------- 125 (196)
T 3tkl_A 68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE----------SFNNVKQWLQEIDRY-ASENVNKL----------- 125 (196)
T ss_dssp EEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHH-SCTTCEEE-----------
T ss_pred EEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHH----------HHHHHHHHHHHHHHh-cCCCCCEE-----------
Confidence 89999999988999999999999999999988532 122222222222221 12468999
Q ss_pred cccccceeeecchhhhchhhhhh-----ccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVIL-----NCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~-----~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++.... .+..+ ..+++--.-...+++++.++|.+..
T Consensus 126 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 126 -------LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp -------EEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999865432110 00000 1233322222346777777777766
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.88 E-value=6.5e-09 Score=92.50 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=49.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-.. ...+..-+..+.... -.+.|++
T Consensus 67 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~----~~~~pii----------- 124 (179)
T 1z0f_A 67 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST-------YNHLSSWLTDARNLT----NPNTVII----------- 124 (179)
T ss_dssp EEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHS----CTTCEEE-----------
T ss_pred EEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH-------HHHHHHHHHHHHHhc----CCCCcEE-----------
Confidence 899999998888899999999999999999885421 111222222222222 1368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 125 -------lv~nK~Dl~~~ 135 (179)
T 1z0f_A 125 -------LIGNKADLEAQ 135 (179)
T ss_dssp -------EEEECTTCGGG
T ss_pred -------EEEECcccccc
Confidence 99999998653
No 50
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.88 E-value=1.6e-08 Score=93.09 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=49.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+.+....+...+.. ...+.|++
T Consensus 76 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~pii----------- 133 (201)
T 2gco_A 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKH-FCPNVPII----------- 133 (201)
T ss_dssp EEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHH-HSTTCCEE-----------
T ss_pred EEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHH-hCCCCCEE-----------
Confidence 89999999988999999999999999999988532 222221222222211 12368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 134 -------lv~nK~Dl~~~ 144 (201)
T 2gco_A 134 -------LVGNKKDLRQD 144 (201)
T ss_dssp -------EEEECGGGTTC
T ss_pred -------EEEecHHhhcC
Confidence 99999999765
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.87 E-value=1.4e-08 Score=89.29 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=52.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+++....+..+.... ..+.|++
T Consensus 58 ~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~~ii----------- 115 (170)
T 1r2q_A 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE----------SFARAKNWVKELQRQA-SPNIVIA----------- 115 (170)
T ss_dssp EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHS-CTTCEEE-----------
T ss_pred EEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhc-CCCCcEE-----------
Confidence 89999999988999999999999999999988532 2333344444444321 2468899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 116 -------lv~nK~Dl~~~ 126 (170)
T 1r2q_A 116 -------LSGNKADLANK 126 (170)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECccCccc
Confidence 99999998653
No 52
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.87 E-value=5.5e-09 Score=105.07 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=80.1
Q ss_pred cccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhhccC
Q psy16468 159 PTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFES 238 (463)
Q Consensus 159 ~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~ 238 (463)
||.|+....+..++..+ .+||++||...+..|..++.+++++|+|+|+++.
T Consensus 195 pT~~~~~~~~~~~~~~l----------------------~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~------- 245 (329)
T 3o47_A 195 PTIGFNVETVEYKNISF----------------------TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR------- 245 (329)
T ss_dssp EETTEEEEEEEETTEEE----------------------EEEECC-----CCSHHHHHTTEEEEEEEEETTCS-------
T ss_pred cccceEEEEEecCcEEE----------------------EEEECCCCHhHHHHHHHHhccCCEEEEEEECCch-------
Confidence 35666666666677666 9999999998899999999999999999998742
Q ss_pred CccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhhchh----hhhhccCCc-----cccC
Q psy16468 239 ENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQY----NVILNCMNY-----TIVP 309 (463)
Q Consensus 239 ~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ek----i~~~~~~~l-----~~~f 309 (463)
..+.+....+..++......+.|++ +++||+|+..+. +........ ..+|
T Consensus 246 ---~s~~~~~~~~~~~~~~~~~~~~pii------------------lV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 304 (329)
T 3o47_A 246 ---ERVNEAREELMRMLAEDELRDAVLL------------------VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ 304 (329)
T ss_dssp ---SSHHHHHHHHHHHHTCGGGTTCEEE------------------EEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEE
T ss_pred ---HHHHHHHHHHHHHHhhhccCCCeEE------------------EEEECccCCcccCHHHHHHHhchhhhhcCCCEEE
Confidence 3466667777888877777789999 999999986532 211100000 0123
Q ss_pred CCCCCCcccHHHHHHHHHHHh
Q psy16468 310 PLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 310 p~f~g~~~~~~~a~~fi~~~f 330 (463)
+--.-...+++++.++|.+..
T Consensus 305 ~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 305 ATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp ECBTTTTBTHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHH
Confidence 322223346778887776654
No 53
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.87 E-value=2.8e-08 Score=89.05 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=49.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHH-HHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK-ALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl-~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+.+.. .++..+... ..+.|++
T Consensus 56 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~--~~~~pii---------- 113 (186)
T 1mh1_A 56 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA----------SFENVRAKWYPEVRHH--CPNTPII---------- 113 (186)
T ss_dssp EEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHH--STTSCEE----------
T ss_pred EEEECCCCHhHHHHHHHhccCCcEEEEEEECCChh----------hHHHHHHHHHHHHHHh--CCCCCEE----------
Confidence 79999999888899999999999999999987532 222322 122222221 1278999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 114 --------lv~nK~Dl~~~ 124 (186)
T 1mh1_A 114 --------LVGTKLDLRDD 124 (186)
T ss_dssp --------EEEECHHHHTC
T ss_pred --------EEeEccccccc
Confidence 99999999754
No 54
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.86 E-value=2.2e-08 Score=89.16 Aligned_cols=103 Identities=10% Similarity=0.033 Sum_probs=64.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+.+....+..+... ..+.|++
T Consensus 61 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~--~~~~p~i----------- 117 (181)
T 3tw8_B 61 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAE----------SFVNVKRWLHEINQN--CDDVCRI----------- 117 (181)
T ss_dssp EEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHH--CTTSEEE-----------
T ss_pred EEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHh--CCCCCEE-----------
Confidence 89999999999999999999999999999988532 223333333333321 2468999
Q ss_pred cccccceeeecchhhhchhhhhhc-cCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN-CMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~-~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++..... ...+ ..+|+--.....+++++.++|.+..
T Consensus 118 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 118 -------LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -------EEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------EEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999998764321100 0000 0223322222345677777776665
No 55
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.85 E-value=9.5e-09 Score=93.10 Aligned_cols=104 Identities=9% Similarity=-0.008 Sum_probs=55.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++-. .+.+....+..+.......+.|++
T Consensus 72 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~i----------- 130 (190)
T 3con_A 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK----------SFADINLYREQIKRVKDSDDVPMV----------- 130 (190)
T ss_dssp EEEECCC-----------CTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHTCSCCCEE-----------
T ss_pred EEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCeEE-----------
Confidence 89999999888889999999999999999988532 222222222232222223468999
Q ss_pred cccccceeeecchhhhchhhhhhc----cC--CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN----CM--NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~----~~--~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+......... +. .+ .+|+--.-...+++++.++|.+..
T Consensus 131 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 131 -------LVGNKCDLPTRTVDTKQAHELAKSYGI-PFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp -------EEEECTTCSCCCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECCcCCcccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998652211100 00 11 233333333346788888887766
No 56
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.84 E-value=1e-08 Score=92.30 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=54.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.......+.|++
T Consensus 73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~pii----------- 131 (195)
T 3bc1_A 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNE----------QSFLNVRNWISQLQMHAYSENPDIV----------- 131 (195)
T ss_dssp EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSSSSSCCEE-----------
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 8999999988889999999999999999998753 2333444555555554444678999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 132 -------lv~nK~Dl~~~ 142 (195)
T 3bc1_A 132 -------LCGNKSDLEDQ 142 (195)
T ss_dssp -------EEEECTTCGGG
T ss_pred -------EEEECcccccc
Confidence 99999998653
No 57
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.83 E-value=3.9e-08 Score=90.98 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=50.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++-. .+.+....+...+.... .+.|++
T Consensus 81 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~pii----------- 138 (204)
T 4gzl_A 81 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA----------SFENVRAKWYPEVRHHC-PNTPII----------- 138 (204)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHC-SSCCEE-----------
T ss_pred EEEECCCchhhHHHHHHHhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhC-CCCCEE-----------
Confidence 79999999888899999999999999999988432 23333322222222211 468999
Q ss_pred cccccceeeecchhhhchh
Q psy16468 278 IHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek 296 (463)
+++||+|+..+.
T Consensus 139 -------lv~nK~Dl~~~~ 150 (204)
T 4gzl_A 139 -------LVGTKLDLRDDK 150 (204)
T ss_dssp -------EEEECHHHHTCH
T ss_pred -------EEEechhhccch
Confidence 999999987643
No 58
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.83 E-value=2e-08 Score=91.91 Aligned_cols=104 Identities=9% Similarity=-0.026 Sum_probs=65.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+.. +..|..++.+++++|||+|+++.+ .+++....+..+.......+.|++
T Consensus 79 ~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii----------- 136 (196)
T 2atv_A 79 EILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG----------SFEEVLPLKNILDEIKKPKNVTLI----------- 136 (196)
T ss_dssp EEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTTSCCCEE-----------
T ss_pred EEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhhCCCCCcEE-----------
Confidence 8999999987 788999999999999999988532 233333334444332233578999
Q ss_pred cccccceeeecchhhhchh-hhhh----ccCCc-cccCCCCCCCcc-cHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVIL----NCMNY-TIVPPLHTGPQR-DAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~~----~~~~l-~~~fp~f~g~~~-~~~~a~~fi~~~f 330 (463)
+++||+|+..++ +... .+..+ ..+|+--.-... +++++.++|.+..
T Consensus 137 -------lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 137 -------LVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp -------EEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred -------EEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 999999997642 1100 00000 123333222333 5777777776665
No 59
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.82 E-value=2.9e-08 Score=90.49 Aligned_cols=104 Identities=10% Similarity=0.069 Sum_probs=65.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++-. .+.+....+...+.. ...+.|++
T Consensus 74 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~p~i----------- 131 (194)
T 3reg_A 74 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT----------SFDNISTKWEPEIKH-YIDTAKTV----------- 131 (194)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHH-HCTTSEEE-----------
T ss_pred EEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH----------HHHHHHHHHHHHHHH-hCCCCCEE-----------
Confidence 89999999999999999999999999999988532 233322222222221 13468999
Q ss_pred cccccceeeecchhhhchh---hhhhc----c--CCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY---NVILN----C--MNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek---i~~~~----~--~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+. +.... + .....+|+--.-...+++++.+++.+..
T Consensus 132 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 132 -------LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp -------EEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------EEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 999999986431 10000 0 0111134333333456788888877765
No 60
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.82 E-value=4.6e-08 Score=86.29 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=43.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+. ...+..-+..+...+. .+.|++
T Consensus 58 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~pii----------- 115 (170)
T 1z08_A 58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS-------FQKVKNWVKELRKMLG----NEICLC----------- 115 (170)
T ss_dssp EEEECCCC-------CCSSTTCSEEEEEEETTCHHH-------HHHHHHHHHHHHHHHG----GGSEEE-----------
T ss_pred EEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH-------HHHHHHHHHHHHHhcC----CCCeEE-----------
Confidence 889999998888999999999999999999885321 1112222222223221 357899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 116 -------lv~nK~Dl~~~ 126 (170)
T 1z08_A 116 -------IVGNKIDLEKE 126 (170)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECcccccc
Confidence 99999998764
No 61
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.82 E-value=1.4e-08 Score=88.71 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=50.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++-+ .+.+.......+.......+.|++
T Consensus 54 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~p~i----------- 112 (166)
T 2ce2_X 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK----------SFEDIHQYREQIKRVKDSDDVPMV----------- 112 (166)
T ss_dssp EEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHTCSCCCEE-----------
T ss_pred EEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEE-----------
Confidence 88999999888888999999999999999987432 233333334444332223468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 113 -------iv~nK~Dl~~ 122 (166)
T 2ce2_X 113 -------LVGNKSDLAA 122 (166)
T ss_dssp -------EEEECTTCSC
T ss_pred -------EEEEchhhhh
Confidence 9999999865
No 62
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.81 E-value=1.8e-08 Score=93.37 Aligned_cols=71 Identities=13% Similarity=0.242 Sum_probs=52.1
Q ss_pred EEEecCCcccccc-ccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCC--CCCCCeeEecCCcccc
Q psy16468 198 TMVDVGGQRSERR-KWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP--WFQHSMVDVGGQRSER 274 (463)
Q Consensus 198 ~i~DvgGqr~eR~-kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~--~~~~~~il~~~~~~~~ 274 (463)
.+||++|+...+. -|..++.+++++|||+|++++. ..+.+....+..++... .-.+.|++
T Consensus 57 ~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~pii-------- 119 (214)
T 2fh5_B 57 TLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ---------REVKDVAEFLYQVLIDSMALKNSPSLL-------- 119 (214)
T ss_dssp EEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHHHHHTSTTCCEEE--------
T ss_pred EEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC---------HHHHHHHHHHHHHHhhhhhcccCCCEE--------
Confidence 8999999987777 7888999999999999987542 12344455555554331 12358999
Q ss_pred ccccccccceeeecchhhhch
Q psy16468 275 RKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 275 v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 120 ----------lv~nK~Dl~~~ 130 (214)
T 2fh5_B 120 ----------IACNKQDIAMA 130 (214)
T ss_dssp ----------EEEECTTSTTC
T ss_pred ----------EEEECCCCCCc
Confidence 99999998654
No 63
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.81 E-value=3e-08 Score=90.01 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=50.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+....+..+... ...+.|++
T Consensus 74 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~pii----------- 131 (189)
T 2gf9_A 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE----------SFAAVQDWATQIKTY-SWDNAQVI----------- 131 (189)
T ss_dssp EEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHH-SCTTCEEE-----------
T ss_pred EEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHh-cCCCCCEE-----------
Confidence 89999999988999999999999999999987532 122222233333221 13468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 132 -------lv~nK~Dl~~~ 142 (189)
T 2gf9_A 132 -------LVGNKCDLEDE 142 (189)
T ss_dssp -------EEEECTTCGGG
T ss_pred -------EEEECcccccc
Confidence 99999998654
No 64
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=1e-07 Score=85.04 Aligned_cols=104 Identities=12% Similarity=0.044 Sum_probs=57.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-.. ...+.+-+..+..... .+.|++
T Consensus 63 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-------~~~~~~~~~~i~~~~~----~~~pii----------- 120 (180)
T 2g6b_A 63 QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS-------FDNIQAWLTEIHEYAQ----HDVALM----------- 120 (180)
T ss_dssp EEEECCCC--------CCGGGCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHSC----TTCEEE-----------
T ss_pred EEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH-------HHHHHHHHHHHHHhCC----CCCcEE-----------
Confidence 889999999889999999999999999999885321 1122222222333221 568999
Q ss_pred cccccceeeecchhhhchhhhh---hc--cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVI---LN--CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~---~~--~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++... .. +... ..+++--.....+++++.+++.+..
T Consensus 121 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 121 -------LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp -------EEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999987532100 00 0000 1233332333346778888877665
No 65
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=2.9e-08 Score=91.82 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=49.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++.+ .+.+....+-..+.. ...+.|++
T Consensus 76 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~pii----------- 133 (207)
T 2fv8_A 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD----------SLENIPEKWVPEVKH-FCPNVPII----------- 133 (207)
T ss_dssp EEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH----------HHHHHHHTHHHHHHH-HSTTCCEE-----------
T ss_pred EEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHH-hCCCCCEE-----------
Confidence 89999999888899999999999999999988532 222221111111111 11368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 134 -------lv~nK~Dl~~~ 144 (207)
T 2fv8_A 134 -------LVANKKDLRSD 144 (207)
T ss_dssp -------EEEECGGGGGC
T ss_pred -------EEEEchhhhcc
Confidence 99999999764
No 66
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.80 E-value=2.4e-08 Score=89.02 Aligned_cols=34 Identities=15% Similarity=0.366 Sum_probs=31.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++|+...+..|..++.+++++|||+|+++-
T Consensus 59 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (178)
T 2hxs_A 59 QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNY 92 (178)
T ss_dssp EEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCH
T ss_pred EEEECCCCccccchhhHHHhhCCEEEEEEECCCH
Confidence 8999999998889999999999999999999854
No 67
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.80 E-value=1.4e-07 Score=86.78 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=66.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++.+ .+.+....+..+.... ..+.|++
T Consensus 60 ~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~pii----------- 117 (206)
T 2bcg_Y 60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE----------SFNGVKMWLQEIDRYA-TSTVLKL----------- 117 (206)
T ss_dssp EEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHS-CTTCEEE-----------
T ss_pred EEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhc-CCCCCEE-----------
Confidence 89999999988999999999999999999988543 2222233333332211 2368999
Q ss_pred cccccceeeecchhhhchhh-hhhccCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-VILNCMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-~~~~~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||.|+..++. .......+ ..+|+--.-...+++++.++|.+..
T Consensus 118 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 118 -------LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp -------EEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999976321 10000001 1233332233346888888887776
No 68
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.80 E-value=3.8e-08 Score=89.60 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=50.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+++....+..+.... ..+.|++
T Consensus 73 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~l~~i~~~~-~~~~pii----------- 130 (191)
T 2a5j_A 73 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLTSWLEDARQHS-SSNMVIM----------- 130 (191)
T ss_dssp EEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHS-CTTCEEE-----------
T ss_pred EEEECCCchhhhhhHHHHhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhc-CCCCCEE-----------
Confidence 89999999988899999999999999999988532 2222333333433221 2468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 131 -------lv~nK~Dl~~ 140 (191)
T 2a5j_A 131 -------LIGNKSDLES 140 (191)
T ss_dssp -------EEEECTTCGG
T ss_pred -------EEEECcccCC
Confidence 9999999865
No 69
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.80 E-value=4.6e-08 Score=91.38 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=50.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++- ..+.+++..|-..+... ..+.|++
T Consensus 78 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~-~~~~pii----------- 135 (214)
T 3q3j_B 78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP----------ETVDSALKKWRTEILDY-CPSTRVL----------- 135 (214)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCT----------HHHHHHHTHHHHHHHHH-CTTSEEE-----------
T ss_pred EEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCH----------HHHHHHHHHHHHHHHHh-CCCCCEE-----------
Confidence 8999999998899999999999999999998843 23333322232222211 2478999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 136 -------lv~nK~Dl~~~ 146 (214)
T 3q3j_B 136 -------LIGCKTDLRTD 146 (214)
T ss_dssp -------EEEECGGGGGC
T ss_pred -------EEEEChhhccc
Confidence 99999999763
No 70
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.80 E-value=3.1e-08 Score=87.26 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=63.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++... +.+....+..+.... -.+.|++
T Consensus 55 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i~~~~-~~~~pii----------- 112 (170)
T 1g16_A 55 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT----------FTNIKQWFKTVNEHA-NDEAQLL----------- 112 (170)
T ss_dssp EEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH----------HHTHHHHHHHHHHHS-CTTCEEE-----------
T ss_pred EEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH----------HHHHHHHHHHHHHhc-CCCCcEE-----------
Confidence 889999998888999999999999999999885431 122222233332211 1368999
Q ss_pred cccccceeeecchhhhchhhhhhccCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILNCMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+............+ ..+|+--.-...+++++.++|.+..
T Consensus 113 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 113 -------LVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp -------EEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------EEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999984322211000000 0233322223345777777776655
No 71
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.80 E-value=6.6e-09 Score=95.08 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=50.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCC--CCCCeeEecCCccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPW--FQHSMVDVGGQRSERR 275 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~--~~~~~il~~~~~~~~v 275 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+..... ..+.|++
T Consensus 76 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~pii--------- 136 (208)
T 2yc2_C 76 FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSM----------ESFESCKAWFELLKSARPDRERPLRAV--------- 136 (208)
T ss_dssp EEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCH----------HHHHHHHHHHHHHHHHCSCTTSCCEEE---------
T ss_pred EEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhhcccccCCcEE---------
Confidence 8999999988888999999999999999998743 233444445555544322 3578999
Q ss_pred cccccccceeeecchhhhc
Q psy16468 276 KWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 276 ~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 137 ---------lv~nK~Dl~~ 146 (208)
T 2yc2_C 137 ---------LVANKTDLPP 146 (208)
T ss_dssp ---------EEEECC----
T ss_pred ---------EEEECcccch
Confidence 9999999876
No 72
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.80 E-value=2.7e-08 Score=87.68 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=49.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++-. .+.+....++.+... ...+.|++
T Consensus 58 ~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~l~~~-~~~~~~ii----------- 115 (170)
T 1z0j_A 58 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEE----------TFSTLKNWVRELRQH-GPPSIVVA----------- 115 (170)
T ss_dssp EEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHH-SCTTSEEE-----------
T ss_pred EEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHh-CCCCCcEE-----------
Confidence 89999999888889999999999999999987532 222223333333321 23468899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 116 -------lv~nK~Dl~~ 125 (170)
T 1z0j_A 116 -------IAGNKCDLTD 125 (170)
T ss_dssp -------EEEECTTCGG
T ss_pred -------EEEECCcccc
Confidence 9999999865
No 73
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.78 E-value=1.2e-08 Score=94.76 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=54.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.......+.|++
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~----------~s~~~~~~~l~~i~~~~~~~~~pii----------- 145 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ----------QSFLNVRNWMSQLQANAYCENPDIV----------- 145 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCH----------HHHHHHHHHHHTCCCCCTTTCCEEE-----------
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCcCCCCEE-----------
Confidence 8999999988888999999999999999998742 2334444455555544444688999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 146 -------lV~NK~Dl~~~ 156 (217)
T 2f7s_A 146 -------LIGNKADLPDQ 156 (217)
T ss_dssp -------EEEECTTCGGG
T ss_pred -------EEEECCccccc
Confidence 99999998653
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=1.3e-08 Score=89.78 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=48.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcC-CCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY-PWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~-~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|..++.+++++++|+|+++-. .+++....+..+... ....+.|++
T Consensus 54 ~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~pii---------- 113 (172)
T 2erx_A 54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ----------SLEELKPIYEQICEIKGDVESIPIM---------- 113 (172)
T ss_dssp EEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHH----------HHHTTHHHHHHHHHHHC---CCCEE----------
T ss_pred EEEECCCchhhHHHHHHhcccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCCCEE----------
Confidence 89999999888888999999999999999988532 122222223222221 123468999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 114 --------~v~nK~Dl~~~ 124 (172)
T 2erx_A 114 --------LVGNKCDESPS 124 (172)
T ss_dssp --------EEEECGGGGGG
T ss_pred --------EEEEccccccc
Confidence 99999998653
No 75
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.77 E-value=6.3e-08 Score=89.34 Aligned_cols=104 Identities=10% Similarity=0.004 Sum_probs=66.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+++....++.+.... -.+.|++
T Consensus 81 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~-~~~~pii----------- 138 (201)
T 2hup_A 81 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRS----------SFLSVPHWIEDVRKYA-GSNIVQL----------- 138 (201)
T ss_dssp EEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH----------HHHTHHHHHHHHHHHS-CTTCEEE-----------
T ss_pred EEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhc-CCCCCEE-----------
Confidence 89999999888889999999999999999988532 2223333444443321 2468999
Q ss_pred cccccceeeecchhhhchh-h-----hhh-ccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-N-----VIL-NCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i-----~~~-~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++ + ... ....+..+|+--.-...+++++.++|.+..
T Consensus 139 -------lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 139 -------LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp -------EEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------EEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999997532 1 110 000111333333333346788888887766
No 76
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.77 E-value=2.7e-08 Score=89.43 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=51.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++-. .+++....+..+.......+.|++
T Consensus 69 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~i----------- 127 (183)
T 3kkq_A 69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA----------SFEHVDRFHQLILRVKDRESFPMI----------- 127 (183)
T ss_dssp EEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTSSCCCEE-----------
T ss_pred EEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEE-----------
Confidence 77999999988999999999999999999988532 222233333444333334578999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 128 -------lv~nK~Dl~~ 137 (183)
T 3kkq_A 128 -------LVANKVDLMH 137 (183)
T ss_dssp -------EEEECTTCST
T ss_pred -------EEEECCCchh
Confidence 9999999865
No 77
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.77 E-value=3e-08 Score=90.57 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=49.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-... ..+..-+..+... ...+.|++
T Consensus 78 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~-------~~~~~~~~~i~~~----~~~~~pii----------- 135 (192)
T 2il1_A 78 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETF-------DDLPKWMKMIDKY----ASEDAELL----------- 135 (192)
T ss_dssp EEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHH-------HTHHHHHHHHHHH----SCTTCEEE-----------
T ss_pred EEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHh----cCCCCcEE-----------
Confidence 8999999988888999999999999999998854311 1111112222222 23468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 136 -------lV~NK~Dl~~~ 146 (192)
T 2il1_A 136 -------LVGNKLDCETD 146 (192)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECcccccc
Confidence 99999998653
No 78
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.76 E-value=7.8e-08 Score=87.39 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=52.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+.+....+..+.... -.+.|++
T Consensus 77 ~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~----------s~~~~~~~l~~i~~~~-~~~~pii----------- 134 (193)
T 2oil_A 77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQ----------TYAVVERWLKELYDHA-EATIVVM----------- 134 (193)
T ss_dssp EEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHH----------HHHTHHHHHHHHHTTS-CTTCEEE-----------
T ss_pred EEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhc-CCCCeEE-----------
Confidence 89999999888899999999999999999988532 2333334445554322 3578999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 135 -------lv~nK~Dl~~~ 145 (193)
T 2oil_A 135 -------LVGNKSDLSQA 145 (193)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECCCcccc
Confidence 99999999753
No 79
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76 E-value=6.4e-09 Score=94.79 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=50.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .++.....++.+.. ....+.|++
T Consensus 75 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~-~~~~~~pii----------- 132 (191)
T 3dz8_A 75 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE----------SFNAVQDWATQIKT-YSWDNAQVI----------- 132 (191)
T ss_dssp EEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHH----------HHHTHHHHHHHHHH-HSCTTCEEE-----------
T ss_pred EEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHH----------HHHHHHHHHHHHHH-hcCCCCCEE-----------
Confidence 89999999988999999999999999999988532 12222222222222 223478999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 133 -------lv~nK~Dl~~~ 143 (191)
T 3dz8_A 133 -------LVGNKCDMEEE 143 (191)
T ss_dssp -------EEEECTTCGGG
T ss_pred -------EEEECCCCccc
Confidence 99999998654
No 80
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.74 E-value=3.6e-08 Score=90.36 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=51.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+......+..+... ...+.|++
T Consensus 60 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~pii----------- 117 (203)
T 1zbd_A 60 QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE----------SFNAVQDWSTQIKTY-SWDNAQVL----------- 117 (203)
T ss_dssp EEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHH----------HHHHHHHHHHHHHHH-SCSSCEEE-----------
T ss_pred EEEECCCchhhcchHHHhhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHh-cCCCCCEE-----------
Confidence 89999999888889999999999999999988532 223333333443321 13468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 118 -------lv~nK~Dl~~~ 128 (203)
T 1zbd_A 118 -------LVGNKCDMEDE 128 (203)
T ss_dssp -------EEEECTTCTTS
T ss_pred -------EEEECcccCcc
Confidence 99999998653
No 81
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.74 E-value=5.7e-08 Score=88.13 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=51.1
Q ss_pred EEEecCCccccc-cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSER-RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR-~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+ ..|..++.+++++|||+|+++.. .+.+....++.+.......+.|++
T Consensus 72 ~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii---------- 131 (189)
T 1z06_A 72 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA----------SFHSLPAWIEECKQHLLANDIPRI---------- 131 (189)
T ss_dssp EEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH----------HHHTHHHHHHHHHHHCCCSCCCEE----------
T ss_pred EEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCCEE----------
Confidence 899999998777 78999999999999999988532 122233334444433234568999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 132 --------lv~nK~Dl~~~ 142 (189)
T 1z06_A 132 --------LVGNKCDLRSA 142 (189)
T ss_dssp --------EEEECTTCGGG
T ss_pred --------EEEECcccccc
Confidence 99999998653
No 82
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.73 E-value=7.8e-08 Score=85.97 Aligned_cols=70 Identities=11% Similarity=0.055 Sum_probs=48.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.++++++||+|+++-+ .+++....+-..+... ..+.|++
T Consensus 59 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~pii----------- 116 (182)
T 3bwd_D 59 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----------SYENVSKKWIPELKHY-APGVPIV----------- 116 (182)
T ss_dssp EEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHH-CTTCCEE-----------
T ss_pred EEEECCCChhhhhhHHhhccCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHh-CCCCCEE-----------
Confidence 78999999888899999999999999999987432 2222221121112111 1368999
Q ss_pred cccccceeeecchhhhchh
Q psy16468 278 IHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek 296 (463)
+++||+|+..+.
T Consensus 117 -------lv~nK~Dl~~~~ 128 (182)
T 3bwd_D 117 -------LVGTKLDLRDDK 128 (182)
T ss_dssp -------EEEECHHHHTCH
T ss_pred -------EEEechhhhcCc
Confidence 999999987643
No 83
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.73 E-value=9e-08 Score=88.40 Aligned_cols=103 Identities=9% Similarity=0.047 Sum_probs=64.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHH-HHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK-ALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl-~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+.. .+...+-.. ..+.|++
T Consensus 60 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~--~~~~pii---------- 117 (212)
T 2j0v_A 60 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA----------SYENVLKKWMPELRRF--APNVPIV---------- 117 (212)
T ss_dssp EEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHH--CTTCCEE----------
T ss_pred EEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHh--CCCCCEE----------
Confidence 89999999888899999999999999999988532 222222 122222111 1368999
Q ss_pred ccccccceeeecchhhhchhhh---------h--hc--cC--CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 277 WIHCFENVTFCNSVQLFSQYNV---------I--LN--CM--NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~eki~---------~--~~--~~--~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+.-. . .. +. ....+|+--.-...+++++.+++.+..
T Consensus 118 --------lv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 118 --------LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp --------EEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------EEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 99999998764321 0 00 00 112344433333456888888887776
No 84
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.73 E-value=5.1e-08 Score=88.18 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=48.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++-. .+++....|...+.. ...+.|++
T Consensus 58 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~i~~-~~~~~pii----------- 115 (184)
T 1m7b_A 58 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE----------TLDSVLKKWKGEIQE-FCPNTKML----------- 115 (184)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHH-HCTTCEEE-----------
T ss_pred EEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH----------HHHHHHHHHHHHHHH-HCCCCCEE-----------
Confidence 89999999888888999999999999999988532 222221112111111 12368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 116 -------lv~nK~Dl~~~ 126 (184)
T 1m7b_A 116 -------LVGCKSDLRTD 126 (184)
T ss_dssp -------EEEECGGGGGC
T ss_pred -------EEEEcchhhcc
Confidence 99999999753
No 85
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.73 E-value=4.3e-08 Score=89.13 Aligned_cols=106 Identities=8% Similarity=0.003 Sum_probs=66.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++-+.. ..+..-+..+..+... ..+.|++
T Consensus 59 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~--~~~~pii----------- 118 (199)
T 2gf0_A 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSL-------EELGPIYKLIVQIKGS--VEDIPVM----------- 118 (199)
T ss_dssp EEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHH-------HTTHHHHHHHHHHHSC--GGGSCEE-----------
T ss_pred EEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHH-------HHHHHHHHHHHHHhcC--CCCCCEE-----------
Confidence 8999999988888899999999999999998853211 1122222223333221 3467899
Q ss_pred cccccceeeecchhhhchhhhhhc----cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN----CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~----~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+....+.... +..+ ..+|+--.-...+++++.++|.+..
T Consensus 119 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 119 -------LVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp -------EEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred -------EEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999998653321100 0000 1234433333356888888887766
No 86
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.72 E-value=7.3e-08 Score=88.66 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=62.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++.+. +.+....+..+... .-.+.|++
T Consensus 72 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s----------~~~~~~~~~~i~~~-~~~~~pii----------- 129 (213)
T 3cph_A 72 QLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT----------FTNIKQWFKTVNEH-ANDEAQLL----------- 129 (213)
T ss_dssp EEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH----------HHTHHHHHHHHHHH-TTTCSEEE-----------
T ss_pred EEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH----------HHHHHHHHHHHHHh-cCCCCCEE-----------
Confidence 899999999888999999999999999999885431 12222223333221 12368999
Q ss_pred cccccceeeecchhhhchhhhhhc----cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILN----CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~----~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+......... +..+ ..+|+--.-...+++++.++|.+..
T Consensus 130 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 130 -------LVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp -------EEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -------EEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998432211100 0000 0233322223345677777776655
No 87
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.1e-07 Score=89.14 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=64.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+++....+..+... ...+.|++
T Consensus 65 ~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~----------s~~~~~~~l~~i~~~-~~~~~pii----------- 122 (223)
T 3cpj_B 65 QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSS----------SYENCNHWLSELREN-ADDNVAVG----------- 122 (223)
T ss_dssp EEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHH----------HHHHHHHHHHHHHHH-CC--CEEE-----------
T ss_pred EEEECCCccchhhhHHHHhccCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHh-CCCCCeEE-----------
Confidence 89999999988999999999999999999988532 233333344444322 13468999
Q ss_pred cccccceeeecchhhhchh-hhh--hc--cCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVI--LN--CMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~--~~--~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++ +.. .. +... ..+|+--.-...+++++.++|.+..
T Consensus 123 -------lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 123 -------LIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp -------EEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred -------EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999987532 110 00 0000 1233322222346788888887776
No 88
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.72 E-value=5.6e-08 Score=86.57 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=49.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++- .+.+++..+..+.. .+.|++
T Consensus 58 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-----------~~~~~~~~l~~~~~----~~~p~i----------- 111 (178)
T 2lkc_A 58 TFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG-----------VMPQTVEAINHAKA----ANVPII----------- 111 (178)
T ss_dssp EESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC-----------CCHHHHHHHHHHGG----GSCCEE-----------
T ss_pred EEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHh----CCCCEE-----------
Confidence 8899999998899999999999999999997642 12334444444432 357899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 112 -------lv~nK~Dl~~ 121 (178)
T 2lkc_A 112 -------VAINKMDKPE 121 (178)
T ss_dssp -------EEEETTTSSC
T ss_pred -------EEEECccCCc
Confidence 9999999875
No 89
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.71 E-value=8.3e-08 Score=85.21 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=50.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+.+....+..+.... -.+.|++
T Consensus 66 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~pii----------- 123 (179)
T 2y8e_A 66 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN----------SFHQTSKWIDDVRTER-GSDVIIM----------- 123 (179)
T ss_dssp EEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHH-TTSSEEE-----------
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhc-CCCCcEE-----------
Confidence 89999999888999999999999999999987532 1222223333332211 1468999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 124 -------lv~nK~Dl~~~ 134 (179)
T 2y8e_A 124 -------LVGNKTDLSDK 134 (179)
T ss_dssp -------EEEECGGGGGG
T ss_pred -------EEEECCccccc
Confidence 99999998653
No 90
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70 E-value=2.5e-07 Score=84.10 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=49.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHH-HHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK-ALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl-~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+.. ..+..+-.. ..+.|++
T Consensus 69 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~--~~~~pii---------- 126 (194)
T 2atx_A 69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA----------SFQNVKEEWVPELKEY--APNVPFL---------- 126 (194)
T ss_dssp EEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHH--STTCCEE----------
T ss_pred EEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHh--CCCCCEE----------
Confidence 88999999888899999999999999999987532 222222 122222221 2368999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 127 --------lv~nK~Dl~~~ 137 (194)
T 2atx_A 127 --------LIGTQIDLRDD 137 (194)
T ss_dssp --------EEEECTTSTTC
T ss_pred --------EEEEChhhccc
Confidence 99999999764
No 91
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.70 E-value=4.3e-08 Score=88.04 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=40.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+++....+..+... ...+.|++
T Consensus 60 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~pii----------- 117 (183)
T 2fu5_C 60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK----------SFDNIRNWIRNIEEH-ASADVEKM----------- 117 (183)
T ss_dssp EEEEC---------CCTTTTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHH-SCTTCEEE-----------
T ss_pred EEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHH----------HHHHHHHHHHHHHHh-cCCCCCEE-----------
Confidence 89999999888899999999999999999988532 233333344444332 12468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 118 -------lv~nK~Dl~~ 127 (183)
T 2fu5_C 118 -------ILGNKCDVND 127 (183)
T ss_dssp -------EEEEC--CCS
T ss_pred -------EEEECccCCc
Confidence 9999999865
No 92
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.69 E-value=5.7e-08 Score=90.50 Aligned_cols=68 Identities=7% Similarity=0.130 Sum_probs=35.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHH-HHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA-LFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~-lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|..++.+++++|||+|+++.+ .+.+... ++..+-. ...+.|++
T Consensus 85 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~--~~~~~pii---------- 142 (214)
T 2j1l_A 85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN----------SFDNIFNRWYPEVNH--FCKKVPII---------- 142 (214)
T ss_dssp EEEEC---------------CEEEEEEEEETTCHH----------HHHHHHHTHHHHHHH--HCSSCCEE----------
T ss_pred EEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHH--hCCCCCEE----------
Confidence 89999999888899999999999999999988532 2222221 2222221 12468999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 143 --------lv~nK~Dl~~~ 153 (214)
T 2j1l_A 143 --------VVGCKTDLRKD 153 (214)
T ss_dssp --------EEEECGGGGSC
T ss_pred --------EEEEChhhhcc
Confidence 99999999764
No 93
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.69 E-value=2.1e-07 Score=84.70 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=48.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+ ++.+++++++|+|+++ ...+++....+..+.......+.|++
T Consensus 70 ~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii----------- 123 (184)
T 3ihw_A 70 LIRDEGGPPELQ-----FAAWVDAVVFVFSLED----------EISFQTVYNYFLRLCSFRNASEVPMV----------- 123 (184)
T ss_dssp EEEECSSSCCHH-----HHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHTTSCGGGSCEE-----------
T ss_pred EEEECCCChhhh-----eecCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 889999986544 7788999999999884 23445555667777665444678999
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||.|+.
T Consensus 124 -------lv~nK~Dl~ 132 (184)
T 3ihw_A 124 -------LVGTQDAIS 132 (184)
T ss_dssp -------EEEECTTCB
T ss_pred -------EEEECcccc
Confidence 999999984
No 94
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.68 E-value=4.6e-08 Score=92.62 Aligned_cols=69 Identities=9% Similarity=0.125 Sum_probs=50.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++++|.|+++-+ .++.....+..+... .-.+.|++
T Consensus 65 ~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~----------Sf~~i~~~~~~i~~~-~~~~~pii----------- 122 (216)
T 4dkx_A 65 QLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVN----------SFQQTTKWIDDVRTE-RGSDVIIM----------- 122 (216)
T ss_dssp EEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHH-HTTSSEEE-----------
T ss_pred EEEECCCchhhhhHHHHHhccccEEEEEeecchhH----------HHHHHHHHHHHHHHh-cCCCCeEE-----------
Confidence 89999999988999999999999999999988432 222233333333221 12368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
|+.||.|+..+
T Consensus 123 -------lVgNK~Dl~~~ 133 (216)
T 4dkx_A 123 -------LVGNKTDLADK 133 (216)
T ss_dssp -------EEEECTTCGGG
T ss_pred -------EEeeccchHhc
Confidence 99999998664
No 95
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.68 E-value=6.5e-08 Score=85.40 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=46.8
Q ss_pred EEEecCCcccccc-ccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERR-KWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~-kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+. .|..++.+++++++|+|+++- ..+.+....+..+.......+.|++
T Consensus 54 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i---------- 113 (169)
T 3q85_A 54 IVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHDLPVI---------- 113 (169)
T ss_dssp EEECCCCC--------CHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSCCCEE----------
T ss_pred EEEECCCccccchhhhhhhhccCCEEEEEEECCCh----------HHHHHHHHHHHHHHhcccCCCCCEE----------
Confidence 7899999977665 788889999999999998852 2233344455555554444578999
Q ss_pred ccccccceeeecchhhhc
Q psy16468 277 WIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~ 294 (463)
+++||.|+..
T Consensus 114 --------lv~nK~Dl~~ 123 (169)
T 3q85_A 114 --------LVGNKSDLAR 123 (169)
T ss_dssp --------EEEECTTCGG
T ss_pred --------EEeeCcchhh
Confidence 9999999864
No 96
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.68 E-value=6.1e-08 Score=90.41 Aligned_cols=102 Identities=7% Similarity=0.023 Sum_probs=65.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++-. .+.+....+..+... ..+.|++
T Consensus 67 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~--~~~~p~i----------- 123 (221)
T 3gj0_A 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRV----------TYKNVPNWHRDLVRV--CENIPIV----------- 123 (221)
T ss_dssp EEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHH----------HHHTHHHHHHHHHHH--STTCCEE-----------
T ss_pred EEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHH----------HHHHHHHHHHHHHHh--CCCCCEE-----------
Confidence 89999999988999999999999999999988532 122222223333221 2378999
Q ss_pred cccccceeeecchhhhchhhhhhccCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNVILNCMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~~~~~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+..... ...+ ..+|+--.....+++++.++|.+..
T Consensus 124 -------lv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 124 -------LCGNKVDIKDRKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp -------EEEECTTSSSCSSCGG-GCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred -------EEEECCccccccccHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999876543221 0011 1223322222345777787777766
No 97
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.67 E-value=2.1e-07 Score=86.37 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=49.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+. ...+..-+..+.... -.+.|++
T Consensus 78 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s-------~~~~~~~~~~i~~~~----~~~~pii----------- 135 (201)
T 2ew1_A 78 QIWDTAGQERFRSITQSYYRSANALILTYDITCEES-------FRCLPEWLREIEQYA----SNKVITV----------- 135 (201)
T ss_dssp EEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHS----CTTCEEE-----------
T ss_pred EEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH-------HHHHHHHHHHHHHhc----CCCCCEE-----------
Confidence 899999998888889999999999999999885321 111222222222222 2468899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 136 -------lv~NK~Dl~~ 145 (201)
T 2ew1_A 136 -------LVGNKIDLAE 145 (201)
T ss_dssp -------EEEECGGGGG
T ss_pred -------EEEECCCCcc
Confidence 9999999864
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.66 E-value=2.2e-08 Score=91.90 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=47.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++- ..+++....+..+. ...-.+.|++
T Consensus 85 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~-~~~~~~~p~i----------- 142 (199)
T 3l0i_B 85 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEID-RYASENVNKL----------- 142 (199)
T ss_dssp EEECCTTCTTCCCCSCC--CCCSEEEECC-CCCS----------HHHHHHHHHHHHHH-SCC-CCSEEE-----------
T ss_pred EEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHH-HhccCCCCEE-----------
Confidence 8999999999999999999999999999998842 23334444444443 2233478999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 143 -------lv~nK~Dl~~~ 153 (199)
T 3l0i_B 143 -------LVGNKCDLTTK 153 (199)
T ss_dssp -------EC-CCSSCC--
T ss_pred -------EEEECccCCcc
Confidence 99999998654
No 99
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=2.2e-07 Score=84.67 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=50.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+....+..+... ...+.|++
T Consensus 75 ~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~pii----------- 132 (192)
T 2fg5_A 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQD----------SFYTLKKWVKELKEH-GPENIVMA----------- 132 (192)
T ss_dssp EEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTH----------HHHHHHHHHHHHHHH-SCTTCEEE-----------
T ss_pred EEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHh-CCCCCcEE-----------
Confidence 89999999988999999999999999999987532 222233333333221 13468999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 133 -------iv~NK~Dl~~ 142 (192)
T 2fg5_A 133 -------IAGNKCDLSD 142 (192)
T ss_dssp -------EEEECGGGGG
T ss_pred -------EEEECccccc
Confidence 9999999865
No 100
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.66 E-value=1.6e-07 Score=82.06 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=59.6
Q ss_pred EEEecCCccc-------cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCC
Q psy16468 198 TMVDVGGQRS-------ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQ 270 (463)
Q Consensus 198 ~i~DvgGqr~-------eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~ 270 (463)
.+||++|+.. .+..|..++.++++++||+|.++.. .. ....+..++.. .+.|++
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~---~~~~~~~~~~~---~~~p~i---- 112 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL---------TQ---ADYEVAEYLRR---KGKPVI---- 112 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC---------CH---HHHHHHHHHHH---HTCCEE----
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc---------cH---hHHHHHHHHHh---cCCCEE----
Confidence 8999999876 3566788899999999999987521 11 11111222221 367899
Q ss_pred ccccccccccccceeeecchhhhchhhhhhc-c-CCccccCCCCCCCcccHHHHHHHHHHH
Q psy16468 271 RSERRKWIHCFENVTFCNSVQLFSQYNVILN-C-MNYTIVPPLHTGPQRDAIAAREFILRM 329 (463)
Q Consensus 271 ~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~-~-~~l~~~fp~f~g~~~~~~~a~~fi~~~ 329 (463)
+++||+|+..+.-.... + .....+|+--.-...+++++.+++.+.
T Consensus 113 --------------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 113 --------------LVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp --------------EEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred --------------EEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 99999999765321110 0 011123333333345678888877654
No 101
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.63 E-value=1.8e-07 Score=82.79 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=44.2
Q ss_pred EEEecCCcccc--ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccc
Q psy16468 198 TMVDVGGQRSE--RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERR 275 (463)
Q Consensus 198 ~i~DvgGqr~e--R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v 275 (463)
.+||++|+... +..+..++.+++++++|+|+++- ..+++....+..+.......+.|++
T Consensus 55 ~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~~pii--------- 115 (175)
T 2nzj_A 55 VVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADR----------GSFESASELRIQLRRTHQADHVPII--------- 115 (175)
T ss_dssp EEECCC-------CHHHHHTTTSCSEEEEEEETTCH----------HHHHHHHHHHHHHHHCC----CCEE---------
T ss_pred EEEecCCCCccchhhhHHhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhccCCCCEE---------
Confidence 88999998763 34456688899999999998843 2333444455555544334578999
Q ss_pred cccccccceeeecchhhhch
Q psy16468 276 KWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 276 ~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 116 ---------lv~NK~Dl~~~ 126 (175)
T 2nzj_A 116 ---------LVGNKADLARC 126 (175)
T ss_dssp ---------EEEECTTCTTT
T ss_pred ---------EEEEChhhccc
Confidence 99999998653
No 102
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.63 E-value=1.1e-07 Score=88.21 Aligned_cols=104 Identities=7% Similarity=0.008 Sum_probs=66.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|+|+|+++.... ..+.+-+..+...+. .+.|++
T Consensus 64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~----~~~pii----------- 121 (218)
T 4djt_A 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC-------QNLARWVKEFQAVVG----NEAPIV----------- 121 (218)
T ss_dssp EEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHH-------HTHHHHHHHHHHHHC----SSSCEE-----------
T ss_pred EEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHH-------HHHHHHHHHHHHhcC----CCCCEE-----------
Confidence 8999999998889999999999999999999854311 222233334444432 247899
Q ss_pred cccccceeeecchhhhchh-hhhh----ccC-CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NVIL----NCM-NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~~~----~~~-~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+. +... .+. .-..+|+--.-...+++++.++|.+.+
T Consensus 122 -------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 122 -------VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp -------EEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred -------EEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 999999987541 2111 000 111233332333356888999998887
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.60 E-value=1.5e-07 Score=86.26 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=48.0
Q ss_pred EEEecCCccc-ccccc--ccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCC--CCCCCeeEecCCcc
Q psy16468 198 TMVDVGGQRS-ERRKW--IHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP--WFQHSMVDVGGQRS 272 (463)
Q Consensus 198 ~i~DvgGqr~-eR~kW--~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~--~~~~~~il~~~~~~ 272 (463)
.+||++||.. .+..| ..++.+++++|||+|+++- +.++...+..++... ...+.|++
T Consensus 72 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------------~~~~~~~~~~~l~~~~~~~~~~pii------ 133 (196)
T 3llu_A 72 QIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD------------YMEALTRLHITVSKAYKVNPDMNFE------ 133 (196)
T ss_dssp EEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC------------CHHHHHHHHHHHHHHHHHCTTCEEE------
T ss_pred EEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc------------hHHHHHHHHHHHHHHHhcCCCCcEE------
Confidence 8999999976 45567 7899999999999998741 223333333333211 23478999
Q ss_pred ccccccccccceeeecchhhhch
Q psy16468 273 ERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 273 ~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 134 ------------lv~nK~Dl~~~ 144 (196)
T 3llu_A 134 ------------VFIHKVDGLSD 144 (196)
T ss_dssp ------------EEEECGGGSCH
T ss_pred ------------EEEeccccCch
Confidence 99999998654
No 104
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.60 E-value=1.8e-07 Score=86.97 Aligned_cols=68 Identities=7% Similarity=0.108 Sum_probs=48.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHH-HHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALF-KTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf-~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|..++.+++++|||+|+++-+ .+.+....| ..+-. ...+.|++
T Consensus 79 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~----------s~~~~~~~~~~~i~~--~~~~~pii---------- 136 (205)
T 1gwn_A 79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE----------TLDSVLKKWKGEIQE--FCPNTKML---------- 136 (205)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHH--HCTTCEEE----------
T ss_pred EEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHH--HCCCCCEE----------
Confidence 89999999888889999999999999999988532 222221112 22211 12368999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 137 --------lv~nK~Dl~~~ 147 (205)
T 1gwn_A 137 --------LVGCKSDLRTD 147 (205)
T ss_dssp --------EEEECGGGGGC
T ss_pred --------EEEechhhccc
Confidence 99999999753
No 105
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.60 E-value=1.3e-07 Score=83.20 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=40.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++++|+|+++- ..+++....+..+.......+.|++
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i----------- 110 (166)
T 3q72_A 52 MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK----------GSFEKASELRVQLRRARQTDDVPII----------- 110 (166)
T ss_dssp EEEECC---------------CCEEEEEEETTCH----------HHHHHHHHHHHHHHHCC---CCCEE-----------
T ss_pred EEEECCCCccchhhhhhhhhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEE-----------
Confidence 8899999998889999999999999999998842 3455556666777665555678999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 111 -------lv~nK~Dl~~~ 121 (166)
T 3q72_A 111 -------LVGNKSDLVRS 121 (166)
T ss_dssp -------EEEECTTCCSS
T ss_pred -------EEEeccccccc
Confidence 99999998643
No 106
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.58 E-value=1.5e-07 Score=85.64 Aligned_cols=68 Identities=6% Similarity=0.089 Sum_probs=45.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCC--CCCCCeeEecCCccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP--WFQHSMVDVGGQRSERR 275 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~--~~~~~~il~~~~~~~~v 275 (463)
.+||++|+...+. |..++.+++++|+|.|+++- ..+++....+..+.... ...+.|++
T Consensus 72 ~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~pii--------- 131 (187)
T 3c5c_A 72 RVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSR----------QSFDSSSSYLELLALHAKETQRSIPAL--------- 131 (187)
T ss_dssp EEEECCC---CCC-THHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHHHHCCCCCEE---------
T ss_pred EEEECCCCCcchh-HHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhhccCCCCCEE---------
Confidence 8899999876554 67788999999999998842 23333333334433210 12468999
Q ss_pred cccccccceeeecchhhhc
Q psy16468 276 KWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 276 ~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 132 ---------lv~nK~Dl~~ 141 (187)
T 3c5c_A 132 ---------LLGNKLDMAQ 141 (187)
T ss_dssp ---------EEEECGGGGG
T ss_pred ---------EEEECcchhh
Confidence 9999999865
No 107
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.57 E-value=5.1e-08 Score=88.46 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=52.1
Q ss_pred EEEecCCccccccccccccCc----ccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCC---CCCCeeEecCC
Q psy16468 198 TMVDVGGQRSERRKWIHCFEN----VTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPW---FQHSMVDVGGQ 270 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~----v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~---~~~~~il~~~~ 270 (463)
.+||++|+...+..|..++.+ ++++|||+|.+. +...+.+....+..++.... -.+.|++
T Consensus 94 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i---- 160 (193)
T 2ged_A 94 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTV---------DPKKLTTTAEFLVDILSITESSCENGIDIL---- 160 (193)
T ss_dssp SEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTC---------CHHHHHHHHHHHHHHHHHHHHHSTTCCCEE----
T ss_pred EEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCC---------CchhHHHHHHHHHHHHhhhhhccccCCCEE----
Confidence 889999998888899988876 899999999871 12334445555555553321 2468999
Q ss_pred ccccccccccccceeeecchhhhch
Q psy16468 271 RSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 271 ~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 161 --------------lv~nK~Dl~~~ 171 (193)
T 2ged_A 161 --------------IACNKSELFTA 171 (193)
T ss_dssp --------------EEEECTTSTTC
T ss_pred --------------EEEEchHhcCC
Confidence 99999998653
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.55 E-value=7.6e-08 Score=96.97 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=48.6
Q ss_pred EEEecCCcccccc---ccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcC--CCCCCCeeEecCCcc
Q psy16468 198 TMVDVGGQRSERR---KWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY--PWFQHSMVDVGGQRS 272 (463)
Q Consensus 198 ~i~DvgGqr~eR~---kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~--~~~~~~~il~~~~~~ 272 (463)
.+||++||..-|+ .|.++|.++.++|||+|+++ ++.+++..+..++.. ....+.|++
T Consensus 49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd------------~~~~~~~~l~~~l~~~~~~~~~ipil------ 110 (331)
T 3r7w_B 49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD------------EYINAITNLAMIIEYAYKVNPSINIE------ 110 (331)
T ss_dssp EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS------------CTTHHHHHHHHHHHHHHHHCTTCEEE------
T ss_pred EEEECCCchhccchhhhhhhhccCCCEEEEEEECCc------------hHHHHHHHHHHHHHHHhhcCCCCcEE------
Confidence 9999999987764 35889999999999999873 133444444333321 112368999
Q ss_pred ccccccccccceeeecchhhhch
Q psy16468 273 ERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 273 ~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
++.||+|+..+
T Consensus 111 ------------lvgNK~DL~~~ 121 (331)
T 3r7w_B 111 ------------VLIHKVDGLSE 121 (331)
T ss_dssp ------------EECCCCCSSCS
T ss_pred ------------EEEECcccCch
Confidence 99999999753
No 109
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.54 E-value=2.4e-07 Score=84.91 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=47.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+++++|||+|+++-... ..+..-+..+.... ..+.|++
T Consensus 80 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~-------~~~~~~~~~i~~~~----~~~~pii----------- 137 (199)
T 2p5s_A 80 QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF-------LNIREWVDMIEDAA----HETVPIM----------- 137 (199)
T ss_dssp EEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHH-------HTHHHHHHHHHHHC-------CCEE-----------
T ss_pred EEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHH-------HHHHHHHHHHHHhc----CCCCCEE-----------
Confidence 8999999988888999999999999999998753211 11221122222221 2368999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 138 -------lv~NK~Dl~~ 147 (199)
T 2p5s_A 138 -------LVGNKADIRD 147 (199)
T ss_dssp -------EEEECGGGHH
T ss_pred -------EEEECccccc
Confidence 9999999974
No 110
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.53 E-value=6.4e-07 Score=80.77 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=48.4
Q ss_pred eEEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 197 VTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 197 ~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
+.+||++|+...+..|..++.+++++|||+|+++-. .+.+....+..+.... +.|++
T Consensus 95 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~----------s~~~~~~~~~~i~~~~---~~pii---------- 151 (208)
T 3clv_A 95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSN----------TLDRAKTWVNQLKISS---NYIII---------- 151 (208)
T ss_dssp EEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHS---CCEEE----------
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHhhC---CCcEE----------
Confidence 389999999888889999999999999999988532 2233334444444322 28999
Q ss_pred ccccccceeeecchh
Q psy16468 277 WIHCFENVTFCNSVQ 291 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D 291 (463)
+++||+|
T Consensus 152 --------lv~NK~D 158 (208)
T 3clv_A 152 --------LVANKID 158 (208)
T ss_dssp --------EEEECTT
T ss_pred --------EEEECCC
Confidence 9999999
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.52 E-value=6.6e-07 Score=84.07 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=46.4
Q ss_pred EEEecCCccc----cc-----cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQRS----ER-----RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr~----eR-----~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.+||++|+.. ++ ..|..++...+++|||+|+++-.. -.+.+.+.++..+... +.+.|++
T Consensus 79 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--------~~~~~~~~~~~~l~~~--~~~~pii-- 146 (228)
T 2qu8_A 79 QIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG--------LTIKEQINLFYSIKSV--FSNKSIV-- 146 (228)
T ss_dssp EEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS--------SCHHHHHHHHHHHHTC--C-CCCEE--
T ss_pred EEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC--------cchHHHHHHHHHHHHh--hcCCcEE--
Confidence 8999999943 33 234455778899999999875321 1123345556665542 3478999
Q ss_pred CCccccccccccccceeeecchhhhch
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 147 ----------------lv~nK~Dl~~~ 157 (228)
T 2qu8_A 147 ----------------IGFNKIDKCNM 157 (228)
T ss_dssp ----------------EEEECGGGCC-
T ss_pred ----------------EEEeCcccCCc
Confidence 99999998653
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.51 E-value=3.7e-07 Score=90.68 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=48.4
Q ss_pred EEEecCCcccc-----ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcc
Q psy16468 198 TMVDVGGQRSE-----RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRS 272 (463)
Q Consensus 198 ~i~DvgGqr~e-----R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~ 272 (463)
.+||++||... +..|..++.+++++|+|+|+++-.. ...+..-...+..+... ..+.|++
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s-------~~~l~~~~~~l~~l~~~--~~~~pii------ 119 (307)
T 3r7w_A 55 NLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV-------LKDIEIFAKALKQLRKY--SPDAKIF------ 119 (307)
T ss_dssp EEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH-------HHHHHHHHHHHHHHHHH--CTTCEEE------
T ss_pred EEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh-------HHHHHHHHHHHHHHHHh--CCCCeEE------
Confidence 99999999877 6788999999999999999874321 11111112222232211 2368999
Q ss_pred ccccccccccceeeecchhhhc
Q psy16468 273 ERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 273 ~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 120 ------------lv~NK~Dl~~ 129 (307)
T 3r7w_A 120 ------------VLLHKMDLVQ 129 (307)
T ss_dssp ------------EEEECGGGSC
T ss_pred ------------EEEecccccc
Confidence 9999999976
No 113
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.49 E-value=8.8e-08 Score=88.87 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=52.3
Q ss_pred EEEecCCccccccccccccCc----ccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCC---CCCCCeeEecCC
Q psy16468 198 TMVDVGGQRSERRKWIHCFEN----VTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP---WFQHSMVDVGGQ 270 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~----v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~---~~~~~~il~~~~ 270 (463)
.+||++|+...+..|..++.+ ++++|||+|.+. +...+.+....+..++... .-.+.|++
T Consensus 58 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i---- 124 (218)
T 1nrj_B 58 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTV---------DPKKLTTTAEFLVDILSITESSCENGIDIL---- 124 (218)
T ss_dssp EEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTS---------CTTCCHHHHHHHHHHHHHHHHHSTTCCCEE----
T ss_pred EEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCC---------ChHHHHHHHHHHHHHHhcccccccCCCCEE----
Confidence 899999998888899999887 899999999871 1223444445555555432 12468999
Q ss_pred ccccccccccccceeeecchhhhch
Q psy16468 271 RSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 271 ~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 125 --------------lv~nK~Dl~~~ 135 (218)
T 1nrj_B 125 --------------IACNKSELFTA 135 (218)
T ss_dssp --------------EEEECTTSTTC
T ss_pred --------------EEEEchHhccc
Confidence 99999998654
No 114
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.48 E-value=1.7e-06 Score=85.08 Aligned_cols=68 Identities=9% Similarity=0.108 Sum_probs=49.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHH-HHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA-LFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~-lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+..|..++.+++++|||+|+++-. .+.+... +...+... ..+.|++
T Consensus 206 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~--~~~~p~i---------- 263 (332)
T 2wkq_A 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA----------SFHHVRAKWYPEVRHH--CPNTPII---------- 263 (332)
T ss_dssp EEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHH--CTTSCEE----------
T ss_pred EEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhh--CCCCcEE----------
Confidence 69999999988999999999999999999988532 2223321 22222211 1278999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 264 --------lv~nK~Dl~~~ 274 (332)
T 2wkq_A 264 --------LVGTKLDLRDD 274 (332)
T ss_dssp --------EEEECHHHHTC
T ss_pred --------EEEEchhcccc
Confidence 99999999654
No 115
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.46 E-value=5.3e-08 Score=92.13 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=42.7
Q ss_pred EecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHH---HHHhcCCC-CCCCeeEecCCccccc
Q psy16468 200 VDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALF---KTIITYPW-FQHSMVDVGGQRSERR 275 (463)
Q Consensus 200 ~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf---~~i~~~~~-~~~~~il~~~~~~~~v 275 (463)
-++|||.+-|.-|.|||+++++||||||.++- .|++ |...+ ..+++... ++++|++
T Consensus 107 ~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~----------~R~e-ak~EL~eL~~mL~ee~~L~gapLL--------- 166 (227)
T 3l82_B 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAH----------KRHE-WQDEFSHIMAMTDPAFGSSGRPLL--------- 166 (227)
T ss_dssp ----------CCHHHHHHHCSEEEEEEECBTT----------CCCC-HHHHHHHHHHHSCTTSSCSCSCEE---------
T ss_pred cccCcHHHHHHHHHHHhcCCCEEEEEeccccH----------hHHH-HHHHHHHHHHHhcchhhhCCCeEE---------
Confidence 47999999999999999999999999998742 2332 66666 55676664 6899999
Q ss_pred cccccccceeeecch-hh
Q psy16468 276 KWIHCFENVTFCNSV-QL 292 (463)
Q Consensus 276 ~~~~~~~~~l~lNK~-D~ 292 (463)
+|+||+ |+
T Consensus 167 ---------VlANKqqDl 175 (227)
T 3l82_B 167 ---------VLSCISQGD 175 (227)
T ss_dssp ---------EEEEESSTT
T ss_pred ---------EEeCCCcCc
Confidence 999995 55
No 116
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.45 E-value=8.2e-07 Score=81.58 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=49.1
Q ss_pred EEEecCCcccccc-ccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRSERR-KWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~eR~-kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||++|+...+. .|..++.+++++|+|.|+++-+ .+.+....+..+.......+.|++
T Consensus 75 ~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii---------- 134 (195)
T 3cbq_A 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR----------SFSKVPETLLRLRAGRPHHDLPVI---------- 134 (195)
T ss_dssp EEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSTTSCCCEE----------
T ss_pred EEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEE----------
Confidence 7899999976554 6777889999999999988432 222333444444433323468999
Q ss_pred ccccccceeeecchhhhch
Q psy16468 277 WIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 135 --------lv~nK~Dl~~~ 145 (195)
T 3cbq_A 135 --------LVGNKSDLARS 145 (195)
T ss_dssp --------EEEECTTCTTT
T ss_pred --------EEeechhcccc
Confidence 99999998653
No 117
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.82 E-value=2.4e-08 Score=91.86 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=30.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+...+..|..++.+++++|||+|+++
T Consensus 81 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 113 (204)
T 3th5_A 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS 113 (204)
Confidence 789999998888999999999999999999874
No 118
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.43 E-value=5.6e-07 Score=81.48 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=47.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+.+++++|.|+++-.. .+.+....+..+... ..+.|++
T Consensus 59 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---------s~~~~~~~~~~~~~~--~~~~pii----------- 116 (184)
T 2zej_A 59 NVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA---------EVDAMKPWLFNIKAR--ASSSPVI----------- 116 (184)
T ss_dssp EEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH---------HHHTHHHHHHHHHHH--CTTCEEE-----------
T ss_pred EEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh---------HHHHHHHHHHHHHhh--CCCCcEE-----------
Confidence 889999998778888889999999999999885311 111112222222211 1368999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
++.||.|+..+
T Consensus 117 -------lv~nK~Dl~~~ 127 (184)
T 2zej_A 117 -------LVGTHLDVSDE 127 (184)
T ss_dssp -------EEEECGGGCCH
T ss_pred -------EEEECCCcccc
Confidence 99999998654
No 119
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.30 E-value=1.8e-06 Score=76.87 Aligned_cols=62 Identities=6% Similarity=0.059 Sum_probs=42.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHH---HHHHHhcCCCCCCCeeEecCCcccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA---LFKTIITYPWFQHSMVDVGGQRSER 274 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~---lf~~i~~~~~~~~~~il~~~~~~~~ 274 (463)
.+||++||.. ..++.+++++|+|+|+++-. .+.+... .+..+.. ....+.|++
T Consensus 57 ~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~----------s~~~~~~~~~~i~~~~~-~~~~~~pii-------- 112 (178)
T 2iwr_A 57 LIREEAGAPD-----AKFSGWADAVIFVFSLEDEN----------SFQAVSRLHGQLSSLRG-EGRGGLALA-------- 112 (178)
T ss_dssp EEEECSSSCC-----HHHHHHCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHC-SSSCCCEEE--------
T ss_pred EEEECCCCch-----hHHHHhCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHHh-cCCCCCCEE--------
Confidence 8899999854 45778999999999988422 2222222 3333332 122478999
Q ss_pred ccccccccceeeecchhhh
Q psy16468 275 RKWIHCFENVTFCNSVQLF 293 (463)
Q Consensus 275 v~~~~~~~~~l~lNK~D~~ 293 (463)
+++||.|+.
T Consensus 113 ----------lv~nK~Dl~ 121 (178)
T 2iwr_A 113 ----------LVGTQDRIS 121 (178)
T ss_dssp ----------EEEECTTCB
T ss_pred ----------EEEECcccc
Confidence 999999984
No 120
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.28 E-value=1.6e-06 Score=90.80 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=57.7
Q ss_pred EEEecCC--------ccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGG--------QRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgG--------qr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||+|| +...+..|..+++++++||||+|..+- .. ..-..+..++.. .+.|++
T Consensus 74 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~---------~~---~~d~~l~~~l~~---~~~pvi--- 135 (456)
T 4dcu_A 74 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG---------VT---AADEEVAKILYR---TKKPVV--- 135 (456)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC---------SC---HHHHHHHHHHTT---CCSCEE---
T ss_pred EEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC---------CC---hHHHHHHHHHHH---cCCCEE---
Confidence 8899999 667788899999999999999996531 11 111222233332 468999
Q ss_pred Cccccccccccccceeeecchhhhchhhhhh--ccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYNVIL--NCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~--~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+....-... ....+...+|--......+++..+.+...+
T Consensus 136 ---------------lV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 136 ---------------LAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp ---------------EEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred ---------------EEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhc
Confidence 9999999865422111 001222334333333346778877776665
No 121
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=5.7e-06 Score=77.73 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=48.3
Q ss_pred EEEecCCccc-cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRS-ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~-eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||+.|+.. ++..+..++.+.+++|+|.|+++- ..++.....+..+.......+.|++
T Consensus 90 ~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~----------~sf~~~~~~~~~l~~~~~~~~~pii---------- 149 (211)
T 2g3y_A 90 ILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPII---------- 149 (211)
T ss_dssp EEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCH----------HHHHHHHHHHHHHHTSGGGTTSCEE----------
T ss_pred EEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhCCCCCcEE----------
Confidence 7799999876 444556678899999999998742 3344444444445433223468999
Q ss_pred ccccccceeeecchhhhc
Q psy16468 277 WIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~ 294 (463)
|++||+|+..
T Consensus 150 --------lVgNK~DL~~ 159 (211)
T 2g3y_A 150 --------LVGNKSDLVR 159 (211)
T ss_dssp --------EEEECTTCGG
T ss_pred --------EEEEChHHhc
Confidence 9999999865
No 122
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.23 E-value=1.5e-07 Score=92.94 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=47.1
Q ss_pred ecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHH---HHhcCCC-CCCCeeEecCCcccccc
Q psy16468 201 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFK---TIITYPW-FQHSMVDVGGQRSERRK 276 (463)
Q Consensus 201 DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~---~i~~~~~-~~~~~il~~~~~~~~v~ 276 (463)
|+|||.+-|.-|.|||+++++||||||.++- .|++ +...+. .+++... ++++|++
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDr----------eRle-ak~EL~eL~~mL~e~~~l~~apLL---------- 251 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAH----------KRHE-WQDEFSHIMAMTDPAFGSSGRPLL---------- 251 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTT----------CCCC-HHHHHHHHHHHHCHHHHCTTCCEE----------
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcH----------hHHH-HHHHHHHHHHHhcchhhcCCCeEE----------
Confidence 6899999999999999999999999998743 3443 555444 5666553 6899999
Q ss_pred ccccccceeeecc-hhhh
Q psy16468 277 WIHCFENVTFCNS-VQLF 293 (463)
Q Consensus 277 ~~~~~~~~l~lNK-~D~~ 293 (463)
||+|| +|+.
T Consensus 252 --------VfANKkQDlp 261 (312)
T 3l2o_B 252 --------VLSCISQGDV 261 (312)
T ss_dssp --------EEEEESSTTS
T ss_pred --------EEeCCccccc
Confidence 99997 5763
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.22 E-value=7.3e-06 Score=73.64 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=21.3
Q ss_pred CCcceeEEEECCCCCChhHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
+....||+++|.+++||||++.++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 356789999999999999999886
No 124
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.21 E-value=1.2e-05 Score=73.56 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=47.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++.+.+++++|.|+++... +.+....+..+... .-.+.|++
T Consensus 57 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~-~~~~~~i~----------- 114 (199)
T 2f9l_A 57 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT----------YENVERWLKELRDH-ADSNIVIM----------- 114 (199)
T ss_dssp EEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH----------HHTHHHHHHHHHHH-SCTTCEEE-----------
T ss_pred EEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH----------HHHHHHHHHHHHHh-cCCCCeEE-----------
Confidence 789999998888889999999999999999875321 11112222222211 12357889
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 115 -------~v~nK~Dl~~ 124 (199)
T 2f9l_A 115 -------LVGNKSDLRH 124 (199)
T ss_dssp -------EEEECTTCGG
T ss_pred -------EEEECccccc
Confidence 9999999864
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.17 E-value=1e-05 Score=72.69 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=43.7
Q ss_pred EEEecCCccccc------cccccccC--cccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSER------RKWIHCFE--NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR------~kW~~~f~--~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||++|+...+ ..|..++. +++.+++|+|.+.+++ .......+.. .+.|++
T Consensus 57 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------------~~~~~~~~~~----~~~pii--- 116 (188)
T 2wjg_A 57 KVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER-------------NLYLTLQLME----MGANLL--- 116 (188)
T ss_dssp EEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHH-------------HHHHHHHHHT----TTCCEE---
T ss_pred EEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHH-------------HHHHHHHHHh----cCCCEE---
Confidence 899999986553 34666664 4899999999886432 1223333332 367899
Q ss_pred Cccccccccccccceeeecchhhhch
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 117 ---------------lv~nK~Dl~~~ 127 (188)
T 2wjg_A 117 ---------------LALNKMDLAKS 127 (188)
T ss_dssp ---------------EEEECHHHHHH
T ss_pred ---------------EEEEhhhcccc
Confidence 99999998654
No 126
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.14 E-value=2.6e-06 Score=90.80 Aligned_cols=100 Identities=10% Similarity=-0.009 Sum_probs=60.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++||...+..|..++.+++++|+|+|.+.++ ++..-+..+.... .+.|++
T Consensus 101 ~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~----------~~~~~~~~l~~~~-----~~~pvi----------- 154 (535)
T 3dpu_A 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS----------NKHYWLRHIEKYG-----GKSPVI----------- 154 (535)
T ss_dssp EEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGG----------GHHHHHHHHHHHS-----SSCCEE-----------
T ss_pred EEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCch----------hHHHHHHHHHHhC-----CCCCEE-----------
Confidence 89999999888888888899999999999988642 2222222222222 258999
Q ss_pred cccccceeeecchhhhchhh-hhh----ccCCcc-ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-VIL----NCMNYT-IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-~~~----~~~~l~-~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++- ... .+..+. .+|+--.-...++++..+.+.+..
T Consensus 155 -------lV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 155 -------VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp -------EEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred -------EEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 9999999865321 110 000111 134433333345777777777766
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.14 E-value=9e-06 Score=78.79 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=60.8
Q ss_pred EEEecCCcccccc------cccccc--CcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERR------KWIHCF--ENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~------kW~~~f--~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||++|+.+.+. .|..++ .+++++++|+|.+... ..+.++..+... ...|++
T Consensus 53 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~-------------~~~~~~~~~~~~---~~~p~i--- 113 (271)
T 3k53_A 53 LVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM-------------RNLFLTLELFEM---EVKNII--- 113 (271)
T ss_dssp EEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH-------------HHHHHHHHHHHT---TCCSEE---
T ss_pred EEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch-------------hhHHHHHHHHhc---CCCCEE---
Confidence 8999999876554 566666 6899999999987542 334444455442 237899
Q ss_pred CccccccccccccceeeecchhhhchhhhhhccCCc-----cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNY-----TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l-----~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+...+-.......+ ..++|--.-...++++..+++....
T Consensus 114 ---------------lv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 114 ---------------LVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ---------------EEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ---------------EEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999999986543111000001 1133333223346788888887766
No 128
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.14 E-value=2.3e-05 Score=71.46 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=29.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++|++..+..|..++.++.++++|.|+++.
T Consensus 81 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 114 (191)
T 1oix_A 81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH 114 (191)
T ss_dssp EEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCH
T ss_pred EEEECCCCcchhhhhHHHhhcCCEEEEEEECcCH
Confidence 6799999988888899999999999999998754
No 129
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.14 E-value=1.1e-05 Score=73.71 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=44.7
Q ss_pred EEEecCCccc-cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCcccccc
Q psy16468 198 TMVDVGGQRS-ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRK 276 (463)
Q Consensus 198 ~i~DvgGqr~-eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~ 276 (463)
.+||+.|+.. ++..|..++.+.+++++|.|+++- ..++.....+..+.....-.+.|++
T Consensus 59 ~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~~~~~~~~l~~~~~~~~~pii---------- 118 (192)
T 2cjw_A 59 ILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPII---------- 118 (192)
T ss_dssp EEECCCCC----CTTGGGHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTTSCCCEE----------
T ss_pred EEEEeccCcchhhhHHHhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhCCCCCeEE----------
Confidence 6789888766 555677788899999999998843 2233333333333322122468999
Q ss_pred ccccccceeeecchhhhc
Q psy16468 277 WIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 277 ~~~~~~~~l~lNK~D~~~ 294 (463)
++.||.|+..
T Consensus 119 --------lV~NK~Dl~~ 128 (192)
T 2cjw_A 119 --------LVGNKSDLVR 128 (192)
T ss_dssp --------EEEECTTCGG
T ss_pred --------EEEechhhhc
Confidence 9999999865
No 130
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.13 E-value=9.7e-06 Score=73.21 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...+||+++|.+++||||++.++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 56799999999999999999886
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.13 E-value=1.1e-05 Score=76.49 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=44.1
Q ss_pred EEEecCCc-----------cccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeE
Q psy16468 198 TMVDVGGQ-----------RSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVD 266 (463)
Q Consensus 198 ~i~DvgGq-----------r~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il 266 (463)
.+||+.|. +..++.|..++.+++++|+|+|++.++. .....+..-+..|..-. ..|++
T Consensus 81 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-----~~~~~l~~~~~~~~~~~------~~~~i 149 (239)
T 3lxx_A 81 VVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-----EEHKATEKILKMFGERA------RSFMI 149 (239)
T ss_dssp EEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-----HHHHHHHHHHHHHHHHH------GGGEE
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-----HHHHHHHHHHHHhhhhc------cceEE
Confidence 88999993 3445666777889999999999875542 11222333333333221 24788
Q ss_pred ecCCccccccccccccceeeecchhhhch
Q psy16468 267 VGGQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||.|+...
T Consensus 150 ------------------iv~nK~D~~~~ 160 (239)
T 3lxx_A 150 ------------------LIFTRKDDLGD 160 (239)
T ss_dssp ------------------EEEECGGGC--
T ss_pred ------------------EEEeCCccCCc
Confidence 99999998653
No 132
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.12 E-value=1.1e-05 Score=78.11 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=60.0
Q ss_pred EEEecCCcccccccc------cccc--CcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERRKW------IHCF--ENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW------~~~f--~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||++|+.+.+..| ..++ +++++||+|+|.+.... .+.++..+... +.|++
T Consensus 55 ~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~-------------~~~~~~~l~~~----~~pvi--- 114 (258)
T 3a1s_A 55 NLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ-------------SLYLLLEILEM----EKKVI--- 114 (258)
T ss_dssp EEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH-------------HHHHHHHHHTT----TCCEE---
T ss_pred EEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh-------------HHHHHHHHHhc----CCCEE---
Confidence 999999998776655 3444 58999999999875421 23344555432 68999
Q ss_pred CccccccccccccceeeecchhhhchhhhhhccCCcc-----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYT-----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~-----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++-.......+. .++|--.-...++++..+.+.+..
T Consensus 115 ---------------lv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 115 ---------------LAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp ---------------EEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------EEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 9999999865421100000011 233333333346788888876655
No 133
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.11 E-value=2.2e-05 Score=69.57 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=42.7
Q ss_pred EEEecCCcccccccc------ccccC--cccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERRKW------IHCFE--NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW------~~~f~--~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||++||...+..| ..++. +++++++|+|.++.++. ...+..+.. .+.|++
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~-------------~~~~~~~~~----~~~p~i--- 112 (165)
T 2wji_A 53 KVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERN-------------LYLTLQLME----MGANLL--- 112 (165)
T ss_dssp EEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHH-------------HHHHHHHHH----TTCCEE---
T ss_pred EEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHh-------------HHHHHHHHh----cCCCEE---
Confidence 889999987654332 45554 78999999998864321 122333332 268999
Q ss_pred Cccccccccccccceeeecchhhhch
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+..+
T Consensus 113 ---------------lv~nK~Dl~~~ 123 (165)
T 2wji_A 113 ---------------LALNKMDLAKS 123 (165)
T ss_dssp ---------------EEEECHHHHHH
T ss_pred ---------------EEEEchHhccc
Confidence 99999998653
No 134
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.10 E-value=2.9e-05 Score=69.50 Aligned_cols=101 Identities=14% Similarity=0.226 Sum_probs=58.8
Q ss_pred EEEecCCccccc---------cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQRSER---------RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr~eR---------~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.+||++|++... +.| .++.+++++++|+|.++... + . ....++.+... ...+.|++
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~~~s--~-----~----~~~~~~~~~~~-~~~~~p~i-- 119 (172)
T 2gj8_A 55 HIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTTTDA--V-----D----PAEIWPEFIAR-LPAKLPIT-- 119 (172)
T ss_dssp EEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTTCCC--C-----S----HHHHCHHHHHH-SCTTCCEE--
T ss_pred EEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCCCCC--H-----H----HHHHHHHHHHh-cccCCCEE--
Confidence 889999985421 123 35789999999999875421 1 1 11222222221 12468999
Q ss_pred CCccccccccccccceeeecchhhhchhhhhhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+...... ..-..+++--.-...+++++.++|.+.+
T Consensus 120 ----------------lv~NK~Dl~~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 120 ----------------VVRNKADITGETLGMSE-VNGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp ----------------EEEECHHHHCCCCEEEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred ----------------EEEECccCCcchhhhhh-ccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999654221110 0111234433333457899999988776
No 135
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.09 E-value=1.7e-05 Score=76.05 Aligned_cols=29 Identities=17% Similarity=0.019 Sum_probs=20.6
Q ss_pred cCCCCCCcceeEEEECCCCCChhHHHHHH
Q psy16468 5 HRNSCPALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 5 ~~~~~~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
+.+.....+++|+|+|.+++||||++..+
T Consensus 13 ~~~~~~~~~l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 13 NLYFQGESTRRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp -------CEEEEEEESSTTSSHHHHHHHH
T ss_pred CccccCCCceEEEEECCCCCcHHHHHHHH
Confidence 34455577899999999999999998775
No 136
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.05 E-value=3.5e-06 Score=75.57 Aligned_cols=111 Identities=10% Similarity=0.136 Sum_probs=58.7
Q ss_pred EEEecCC-----------ccccccccccccCc----ccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCC
Q psy16468 198 TMVDVGG-----------QRSERRKWIHCFEN----VTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQH 262 (463)
Q Consensus 198 ~i~DvgG-----------qr~eR~kW~~~f~~----v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~ 262 (463)
.+||++| +...+..|..++.+ +..+++|+|.+.++.....-.....+.....+...+.. .+
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 122 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LD 122 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TT
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh----cC
Confidence 7899999 55556667666654 55778888877665331100000000111222232222 35
Q ss_pred CeeEecCCccccccccccccceeeecchhhhchh---hhh---hccCCcc----ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 263 SMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQY---NVI---LNCMNYT----IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 263 ~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~ek---i~~---~~~~~l~----~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
.|++ +++||+|+..+. ... ....++. .+|+--.-...+++++.+++.+..
T Consensus 123 ~pii------------------lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 123 IPTI------------------VAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp CCEE------------------EEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceE------------------EEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 8899 999999997643 111 1000111 134433333346788888887766
No 137
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.04 E-value=1.7e-05 Score=83.77 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=56.1
Q ss_pred EEEecCCcccccc--------ccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERR--------KWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~--------kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||++|++..+. +...++.+++.|+||+|.++.. ....+.+...+++.+- +.|++
T Consensus 284 ~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~-------s~~~~~~~~~~l~~l~------~~piI--- 347 (476)
T 3gee_A 284 RLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTER-------LDDELTEIRELKAAHP------AAKFL--- 347 (476)
T ss_dssp EEEC--------------------CCCSSCSEEEEEEETTTCS-------SGGGHHHHHHHHHHCT------TSEEE---
T ss_pred EEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCc-------chhhhHHHHHHHHhcC------CCCEE---
Confidence 8999999876443 3355789999999999988532 1122334444444432 68999
Q ss_pred Cccccccccccccceeeecchhhhchhhhhh---ccCCccccCCCCCCCcccHHHHHHHHHHHhc
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYNVIL---NCMNYTIVPPLHTGPQRDAIAAREFILRMTS 331 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~---~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f~ 331 (463)
+++||+|+....-... ....+..+++--.-...++++..++|.+.+.
T Consensus 348 ---------------vV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 348 ---------------TVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ---------------EEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ---------------EEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 9999999865432110 0001122333333334568888888877774
No 138
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.01 E-value=2e-05 Score=76.85 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.8
Q ss_pred cceeEEEECCCCCChhHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQm 33 (463)
..++|+++|.++|||||++.++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l 23 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQL 23 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHH
Confidence 3589999999999999999886
No 139
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.00 E-value=9.4e-06 Score=75.15 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...+||+++|..++||||++..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l 49 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVL 49 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 56789999999999999998875
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.96 E-value=5.4e-05 Score=72.40 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=20.2
Q ss_pred CCcceeEEEECCCCCChhHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
....++|+|+|.+++||||++..+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l 42 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSI 42 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHH
Confidence 356789999999999999998775
No 141
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.94 E-value=5.4e-05 Score=72.95 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.5
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
..+++|+++|.+++||||++..+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999998864
No 142
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.93 E-value=6.4e-05 Score=72.63 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=45.1
Q ss_pred EEEecCCcccccc----------cccccc--CcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCee
Q psy16468 198 TMVDVGGQRSERR----------KWIHCF--ENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMV 265 (463)
Q Consensus 198 ~i~DvgGqr~eR~----------kW~~~f--~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~i 265 (463)
.+||++|+.+.+. -+..++ +++++||+|+|.++. +..+.+...+... +.|+
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~-------------~~~~~l~~~l~~~----~~pv 113 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL-------------ERHLYLTSQLFEL----GKPV 113 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH-------------HHHHHHHHHHTTS----CSCE
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc-------------hhHHHHHHHHHHc----CCCE
Confidence 8999999966553 345566 889999999998752 2223344444332 6899
Q ss_pred EecCCccccccccccccceeeecchhhhchh
Q psy16468 266 DVGGQRSERRKWIHCFENVTFCNSVQLFSQY 296 (463)
Q Consensus 266 l~~~~~~~~v~~~~~~~~~l~lNK~D~~~ek 296 (463)
+ +++||+|+...+
T Consensus 114 i------------------lv~NK~Dl~~~~ 126 (256)
T 3iby_A 114 V------------------VALNMMDIAEHR 126 (256)
T ss_dssp E------------------EEEECHHHHHHT
T ss_pred E------------------EEEEChhcCCcC
Confidence 9 999999987653
No 143
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.91 E-value=4.4e-05 Score=73.34 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=23.4
Q ss_pred CCCCCcceeEEEECCC---------CCChhHHHHHHH
Q psy16468 7 NSCPALEASNDFVGTG---------ESGKSTFIKQMR 34 (463)
Q Consensus 7 ~~~~~~~~kvLlLG~g---------eSGKSTi~KQmr 34 (463)
+......+||+++|.+ ++|||||+.++-
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~ 49 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFV 49 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHH
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHH
Confidence 3344677999999999 999999998863
No 144
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.82 E-value=0.00026 Score=70.13 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=62.8
Q ss_pred EEEecCCccccc----------cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEe
Q psy16468 198 TMVDVGGQRSER----------RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDV 267 (463)
Q Consensus 198 ~i~DvgGqr~eR----------~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~ 267 (463)
.++|++|+...+ ..|..++.++++|+||+|.++-.. .+....+-..+.. .+.|++
T Consensus 62 ~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-----------~~~~~~~~~~l~~---~~~pvi- 126 (308)
T 3iev_A 62 IFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-----------PRDEEIYQNFIKP---LNKPVI- 126 (308)
T ss_dssp EEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-----------HHHHHHHHHHTGG---GCCCEE-
T ss_pred EEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-----------chhHHHHHHHHHh---cCCCEE-
Confidence 889999985433 566778899999999999874311 1123332222222 368999
Q ss_pred cCCccccccccccccceeeecchhhh-c-hhhhhh------ccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 268 GGQRSERRKWIHCFENVTFCNSVQLF-S-QYNVIL------NCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 268 ~~~~~~~v~~~~~~~~~l~lNK~D~~-~-eki~~~------~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+. . +.+... ...+...+||--.-...++++..++|....
T Consensus 127 -----------------lV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 127 -----------------VVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp -----------------EEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred -----------------EEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 999999987 2 222110 000223445544444457888888888777
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.77 E-value=0.00013 Score=76.13 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=31.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.++|++|++...+.|...+..++++|+|||.++-
T Consensus 98 ~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 98 TILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 9999999999899999999999999999998753
No 146
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.73 E-value=0.00019 Score=71.00 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=58.2
Q ss_pred EEEecCCcccc--------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSE--------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~e--------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||++|+... ...+..++.++++++||+|.++... .. ...+++.+-.. ..+.|++
T Consensus 58 ~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~---------~~--~~~i~~~l~~~--~~~~p~i--- 121 (301)
T 1wf3_A 58 VFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT---------PE--DELVARALKPL--VGKVPIL--- 121 (301)
T ss_dssp EEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC---------HH--HHHHHHHHGGG--TTTSCEE---
T ss_pred EEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC---------hH--HHHHHHHHHhh--cCCCCEE---
Confidence 88999998653 3345567889999999999874311 01 11222222221 2468999
Q ss_pred Cccccccccccccceeeecchhhhch-h-hhhh-c-cCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQ-Y-NVIL-N-CMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~e-k-i~~~-~-~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+... . +... . ..++..++|--.....++++..+.|....
T Consensus 122 ---------------lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 122 ---------------LVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp ---------------EEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred ---------------EEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 99999998643 2 2111 0 01222334433333345677777775443
No 147
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.73 E-value=0.00013 Score=71.17 Aligned_cols=95 Identities=14% Similarity=0.018 Sum_probs=59.2
Q ss_pred EEEecCCccccc------cccccccC--cccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSER------RKWIHCFE--NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR------~kW~~~f~--~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||++|+.+.+ ..|..++. ++++||+|+|.+... ..+.+...+.. .+.|++
T Consensus 52 ~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e-------------~~~~~~~~l~~----~~~p~i--- 111 (272)
T 3b1v_A 52 EIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE-------------RNLYLTTQLIE----TGIPVT--- 111 (272)
T ss_dssp EEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH-------------HHHHHHHHHHH----TCSCEE---
T ss_pred EEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH-------------hHHHHHHHHHh----cCCCEE---
Confidence 889999997655 33455554 699999999987532 12233334433 368999
Q ss_pred Cccccccccccccceeeecchhhhchh--------hhhhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQY--------NVILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~ek--------i~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..++ +.... . ..++|--.....++++..++|.+..
T Consensus 112 ---------------lv~NK~Dl~~~~~~~~~~~~l~~~l--g-~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 112 ---------------IALNMIDVLDGQGKKINVDKLSYHL--G-VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ---------------EEEECHHHHHHTTCCCCHHHHHHHH--T-SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ---------------EEEEChhhCCcCCcHHHHHHHHHHc--C-CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 999999987542 11110 0 0234433334456888888886654
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.68 E-value=0.00013 Score=70.85 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
..+++|+++|.+++||||++.++
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHH
T ss_pred ccEEEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999999885
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.67 E-value=0.00028 Score=74.22 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=31.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++|+....+.+..++.+++++|+|+|.++-
T Consensus 114 ~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 114 TIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred EEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 9999999998899999999999999999998853
No 150
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.66 E-value=7.1e-05 Score=76.38 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=27.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEecc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALS 229 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls 229 (463)
.+||++|+....+.+......++++|+|+| +
T Consensus 63 ~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 63 VFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 999999998777777778889999999999 5
No 151
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.00022 Score=71.99 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.2
Q ss_pred CCcceeEEEECCCCCChhHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
.....+++++|.+++||||+++.+
T Consensus 164 ~~~~~~v~lvG~~gvGKSTLin~L 187 (357)
T 2e87_A 164 DLEIPTVVIAGHPNVGKSTLLKAL 187 (357)
T ss_dssp CSSSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999998875
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.65 E-value=0.00021 Score=74.17 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=30.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.|..++..++++|+|+|.++
T Consensus 87 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 87 TIIDAPGHRDFVKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp EECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred EEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC
Confidence 999999999888889999999999999999885
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.64 E-value=0.00041 Score=71.97 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=30.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.|..++..++++|+|+|.++
T Consensus 107 ~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 107 IIADTPGHEQYTRNMATGASTCDLAIILVDARY 139 (434)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 899999998888889999999999999999875
No 154
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.53 E-value=0.00076 Score=70.58 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=31.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++|+....+.+...+..++++|+|+|.++-
T Consensus 88 ~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 88 TVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 9999999988888899999999999999998753
No 155
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.47 E-value=0.00032 Score=77.24 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=49.4
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++..++++|+|+|.++..+ ......+..+.. .+.|++
T Consensus 80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-----------~~t~~~~~~~~~----~~~p~i----------- 133 (691)
T 1dar_A 80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-----------PQSETVWRQAEK----YKVPRI----------- 133 (691)
T ss_dssp EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-----------HHHHHHHHHHHH----TTCCEE-----------
T ss_pred EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-----------hhhHHHHHHHHH----cCCCEE-----------
Confidence 999999998777888999999999999999886432 223334444332 268999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+...
T Consensus 134 -------vviNKiD~~~~ 144 (691)
T 1dar_A 134 -------AFANKMDKTGA 144 (691)
T ss_dssp -------EEEECTTSTTC
T ss_pred -------EEEECCCcccC
Confidence 99999998653
No 156
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.47 E-value=0.00044 Score=72.55 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=21.2
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++|+....+.+...+..++++|+|+|.++-
T Consensus 124 ~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 124 SLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred EEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 8999999988888899999999999999998754
No 157
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.47 E-value=0.0016 Score=64.18 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=59.3
Q ss_pred EEEecCCcc---------ccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQR---------SERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr---------~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.++|++|+. ..+..+..+++.++.++||+|.+++. . ....+.+.+.. .+.|++
T Consensus 59 ~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~----------~--~~~~i~~~l~~----~~~P~i-- 120 (301)
T 1ega_A 59 IYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT----------P--DDEMVLNKLRE----GKAPVI-- 120 (301)
T ss_dssp EEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC----------H--HHHHHHHHHHS----SSSCEE--
T ss_pred EEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCC----------H--HHHHHHHHHHh----cCCCEE--
Confidence 889999986 22455677889999999999986421 0 11123333332 358999
Q ss_pred CCccccccccccccceeeecchhhhc--hhhhh----hc-cCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFS--QYNVI----LN-CMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~--eki~~----~~-~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+.. +.+.. .. ...+..++|--.-...+++...+.|....
T Consensus 121 ----------------lvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 121 ----------------LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp ----------------EEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ----------------EEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 9999999876 32211 10 00222345544433446777777775543
No 158
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.45 E-value=0.00036 Score=74.49 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=47.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..+..++..++++|+|+|.++..+ .....++..+. -.+.|++
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-----------~~t~~~~~~~~----~~~ipii----------- 138 (529)
T 2h5e_A 85 NLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-----------DRTRKLMEVTR----LRDTPIL----------- 138 (529)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-----------HHHHHHHHHHT----TTTCCEE-----------
T ss_pred EEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-----------HHHHHHHHHHH----HcCCCEE-----------
Confidence 999999998777788889999999999999875321 12233333332 1367899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 139 -------vviNK~Dl~~ 148 (529)
T 2h5e_A 139 -------TFMNKLDRDI 148 (529)
T ss_dssp -------EEEECTTSCC
T ss_pred -------EEEcCcCCcc
Confidence 9999999854
No 159
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.43 E-value=0.00024 Score=72.87 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=62.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+....+.|......++++|+|+|.++-. ......+-+.+.+.+ ...|++
T Consensus 78 ~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~-------~~~qt~~~~~~~~~~------~~~~ii----------- 133 (403)
T 3sjy_A 78 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-------PQPQTREHFVALGII------GVKNLI----------- 133 (403)
T ss_dssp EEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEE-----------
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC-------CcHHHHHHHHHHHHc------CCCCEE-----------
Confidence 88999999988999999999999999999987421 011222222222222 124788
Q ss_pred cccccceeeecchhhhchhh-hhhccCCcc-----------ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-VILNCMNYT-----------IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-~~~~~~~l~-----------~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+....- ... ...+. .++|--.-...++++..++|.+..
T Consensus 134 -------vviNK~Dl~~~~~~~~~-~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 134 -------IVQNKVDVVSKEEALSQ-YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp -------EEEECGGGSCHHHHHHH-HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred -------EEEECccccchHHHHHH-HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 9999999864321 100 00111 123322223346888888888766
No 160
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00038 Score=75.54 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=31.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.+...+.+++++|+|+|.++
T Consensus 248 ~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 248 TIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred EEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence 999999999888999999999999999999885
No 161
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.41 E-value=0.00018 Score=76.04 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=42.4
Q ss_pred EEEecCCcc-ccc--------cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQR-SER--------RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr-~eR--------~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.+||++|++ ... +++..++++++.+|||+|.++-.. . +..++++.+ .+.|++
T Consensus 294 ~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s----------~-~~~~il~~l------~~~pii-- 354 (482)
T 1xzp_A 294 RIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD----------E-EDRKILERI------KNKRYL-- 354 (482)
T ss_dssp EEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC----------H-HHHHHHHHH------TTSSEE--
T ss_pred EEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC----------H-HHHHHHHHh------cCCCEE--
Confidence 899999987 221 234457889999999999875321 0 122333332 367899
Q ss_pred CCccccccccccccceeeecchhhhc
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 355 ----------------vV~NK~DL~~ 364 (482)
T 1xzp_A 355 ----------------VVINKVDVVE 364 (482)
T ss_dssp ----------------EEEEECSSCC
T ss_pred ----------------EEEECccccc
Confidence 9999999864
No 162
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.38 E-value=0.00026 Score=74.70 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=61.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+....+.+......++++|+|+|.++-- ...-.+.+.+.+. .+.|++
T Consensus 76 ~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~--------~~qt~e~l~~~~~-------~~ip~I----------- 129 (482)
T 1wb1_A 76 TLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP--------KTQTGEHMLILDH-------FNIPII----------- 129 (482)
T ss_dssp EECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCS--------CHHHHHHHHHHHH-------TTCCBC-----------
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCc--------cHHHHHHHHHHHH-------cCCCEE-----------
Confidence 89999999888888999999999999999987421 1111222222222 246778
Q ss_pred cccccceeeecchhhhchh-hh-------hh-ccC-Cc--cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY-NV-------IL-NCM-NY--TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek-i~-------~~-~~~-~l--~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+. +. .. ... .+ ..++|--.-...++++..++|.+..
T Consensus 130 -------vviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 130 -------VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp -------EEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------EEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 999999986431 11 10 000 01 1233332223346888888888866
No 163
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.34 E-value=0.00058 Score=75.19 Aligned_cols=65 Identities=8% Similarity=0.108 Sum_probs=48.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|..++..++++|+|+|.++..+ ......+..+.. .+.|++
T Consensus 78 ~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-----------~~~~~~~~~~~~----~~~p~i----------- 131 (693)
T 2xex_A 78 NIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-----------PQTETVWRQATT----YGVPRI----------- 131 (693)
T ss_dssp EEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-----------HHHHHHHHHHHH----TTCCEE-----------
T ss_pred EEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-----------HHHHHHHHHHHH----cCCCEE-----------
Confidence 899999998777888889999999999999875321 223344444433 268999
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+...
T Consensus 132 -------lviNK~Dl~~~ 142 (693)
T 2xex_A 132 -------VFVNKMDKLGA 142 (693)
T ss_dssp -------EEEECTTSTTC
T ss_pred -------EEEECCCcccc
Confidence 99999998653
No 164
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.34 E-value=0.00034 Score=73.51 Aligned_cols=97 Identities=8% Similarity=0.102 Sum_probs=50.1
Q ss_pred EEEecCCcccccccc--------ccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRSERRKW--------IHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW--------~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||+.|++.....| ..++.+++.+++|+|.++-. . .+...+++.+- +.|++
T Consensus 275 ~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~--------~---~~~~~i~~~l~------~~pii--- 334 (462)
T 3geh_A 275 QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGW--------T---TGDQEIYEQVK------HRPLI--- 334 (462)
T ss_dssp EECC--------------------CCCCSCSEEEEEEETTTCS--------C---HHHHHHHHHHT------TSCEE---
T ss_pred EEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCC--------C---HHHHHHHHhcc------CCcEE---
Confidence 788888876543222 34678899999999987521 0 11123333332 36899
Q ss_pred CccccccccccccceeeecchhhhchhhhhhccCCcc---ccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYT---IVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~~~~l~---~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+.-... ...+. .+++--.-...++++..+.|.+.+
T Consensus 335 ---------------vV~NK~Dl~~~~~~~~-~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 335 ---------------LVMNKIDLVEKQLITS-LEYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp ---------------EEEECTTSSCGGGSTT-CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------EEEECCCCCcchhhHH-HHHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999876532211 00111 122211222346888899998887
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.26 E-value=0.00041 Score=73.59 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=30.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+......|......++++|+|+|.++
T Consensus 54 ~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~ 86 (501)
T 1zo1_I 54 TFLDTPGHAAFTSMRARGAQATDIVVLVVAADD 86 (501)
T ss_dssp CEECCCTTTCCTTSBCSSSBSCSSEEEEEETTT
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEeeccc
Confidence 889999998888889999999999999999775
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.24 E-value=0.0013 Score=71.27 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=47.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+..-...|..++..++++|+|+|.++-- +..+...+..+-. .+.|++
T Consensus 73 ~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv-----------~~qT~e~l~~l~~----~~vPiI----------- 126 (594)
T 1g7s_A 73 FFIDTPGHEAFTTLRKRGGALADLAILIVDINEGF-----------KPQTQEALNILRM----YRTPFV----------- 126 (594)
T ss_dssp EEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCC-----------CHHHHHHHHHHHH----TTCCEE-----------
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-----------cHhHHHHHHHHHH----cCCeEE-----------
Confidence 88999999888888888889999999999987521 1223333333322 368999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 127 -------VViNKiDl~~ 136 (594)
T 1g7s_A 127 -------VAANKIDRIH 136 (594)
T ss_dssp -------EEEECGGGST
T ss_pred -------EEeccccccc
Confidence 9999999864
No 167
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.23 E-value=0.00044 Score=71.84 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=58.0
Q ss_pred EEEecCCccccc-------cccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCC
Q psy16468 198 TMVDVGGQRSER-------RKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQ 270 (463)
Q Consensus 198 ~i~DvgGqr~eR-------~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~ 270 (463)
.+||++|+.... .+|..++.+++++|+|+|.+. .....+-+..+... +.|++
T Consensus 86 ~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~~~~l~~l~~~-------~~piI---- 144 (423)
T 3qq5_A 86 TLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYEDDVVNLFKEM-------EIPFV---- 144 (423)
T ss_dssp EEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHHHHHHHHHHHT-------TCCEE----
T ss_pred EEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHHHHHHHHHHhc-------CCCEE----
Confidence 889999985432 335678899999999999721 11122222222222 68999
Q ss_pred ccccccccccccceeeecchhhhchhhh---hhccCCc-cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 271 RSERRKWIHCFENVTFCNSVQLFSQYNV---ILNCMNY-TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 271 ~~~~v~~~~~~~~~l~lNK~D~~~eki~---~~~~~~l-~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+... ...+..+ ..+++--.-...++++..+.|.+..
T Consensus 145 --------------vV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 145 --------------VVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp --------------EECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred --------------EEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 99999998765432 1100011 1233322223346788888887776
No 168
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.23 E-value=0.0011 Score=63.99 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
..+++|+++|.+++||||++..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l 59 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSI 59 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998875
No 169
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.19 E-value=0.00037 Score=74.52 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=65.7
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++..++.+|+|+|.++- .+...+..+..+.. .+.|++
T Consensus 55 ~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg-----------~~~qt~e~l~~~~~----~~vPiI----------- 108 (537)
T 3izy_P 55 TFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG-----------VMKQTVESIQHAKD----AHVPIV----------- 108 (537)
T ss_dssp BCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC-----------CCHHHHHHHHHHHT----TTCCEE-----------
T ss_pred EEEECCChHHHHHHHHHHHccCCEEEEEEECCCC-----------ccHHHHHHHHHHHH----cCCcEE-----------
Confidence 7899999988889999999999999999998752 12334444444433 357899
Q ss_pred cccccceeeecchhhhchhh-------hhhc--cCCc---cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-------VILN--CMNY---TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-------~~~~--~~~l---~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..... .... +..+ ..++|--.-...++++..++|....
T Consensus 109 -------VViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 109 -------LAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp -------ECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred -------EEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 9999999864211 1110 0011 1234433333456888888888876
No 170
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.17 E-value=0.0013 Score=72.51 Aligned_cols=65 Identities=9% Similarity=0.098 Sum_probs=47.8
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+.-|..++..++++|+|+|.++..+ ......+..+.. .+.|++
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-----------~qt~~~~~~~~~----~~ip~i----------- 138 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ-----------PQSETVWRQANK----YKVPRI----------- 138 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-----------HHHHHHHHHHHH----cCCCEE-----------
Confidence 899999997777778888999999999999885421 122333433322 357899
Q ss_pred cccccceeeecchhhhch
Q psy16468 278 IHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+...
T Consensus 139 -------lviNKiD~~~~ 149 (704)
T 2rdo_7 139 -------AFVNKMDRMGA 149 (704)
T ss_pred -------EEEeCCCcccc
Confidence 99999998553
No 171
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.16 E-value=0.0017 Score=70.24 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=64.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|..++..++++|+|+|.++-.+ ..++..+..... .+.|++
T Consensus 74 ~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-----------~qt~~~~~~~~~----~~ipiI----------- 127 (599)
T 3cb4_D 74 NFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-----------AQTLANCYTAME----MDLEVV----------- 127 (599)
T ss_dssp EEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-----------THHHHHHHHHHH----TTCEEE-----------
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----CCCCEE-----------
Confidence 899999998888888899999999999999875421 122333333332 367999
Q ss_pred cccccceeeecchhhhchhh-------hhhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN-------VILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki-------~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..... ......+...+++--.-...++++..+.|.+..
T Consensus 128 -------vViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 128 -------PVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp -------EEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred -------EeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcC
Confidence 9999999865321 111000111233322223346888999998887
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.14 E-value=0.0021 Score=65.97 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=60.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.++|++|+....+.+......++++|+|+|.++-. ......+.+.++..+ ...|++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~~------~~~~ii----------- 141 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII------GQKNII----------- 141 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEE-----------
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHHHHc------CCCcEE-----------
Confidence 88999999777777777777889999999987421 011222333333322 225788
Q ss_pred cccccceeeecchhhhchh--------hhhhccC---CccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQY--------NVILNCM---NYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ek--------i~~~~~~---~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+.... +...... .-..++|--.-...++++..++|....
T Consensus 142 -------vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 142 -------IAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp -------EEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred -------EEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 999999986532 1110000 001123322222346888888888766
No 173
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.10 E-value=0.0014 Score=67.27 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=29.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.+......++++|+|+|.++
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~ 116 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANE 116 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTS
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCC
Confidence 899999998877888888888999999999874
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.08 E-value=0.0023 Score=66.70 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.7
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
....|++++|.+++||||++.++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l 215 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAM 215 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHH
Confidence 56789999999999999998886
No 175
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.06 E-value=0.0034 Score=67.95 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=65.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+......|...+..++++|+|+|.++-.+ .+++..+..... .+.|++
T Consensus 76 nliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-----------~qt~~~~~~a~~----~~ipiI----------- 129 (600)
T 2ywe_A 76 HLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-----------AQTVANFWKAVE----QDLVII----------- 129 (600)
T ss_dssp EEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-----------HHHHHHHHHHHH----TTCEEE-----------
T ss_pred EEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-----------HHHHHHHHHHHH----CCCCEE-----------
Confidence 899999998888888889999999999999875321 123333433332 368899
Q ss_pred cccccceeeecchhhhchhhh-------hhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYNV-------ILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki~-------~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+...... .....+...+++--.-...++++..++|.+..
T Consensus 130 -------vviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 130 -------PVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp -------EEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred -------EEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 99999998653221 11000111234433333457889999998888
No 176
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.02 E-value=0.0023 Score=64.96 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=18.4
Q ss_pred CCCccee-EEEECCCCCChhHHHHHH
Q psy16468 9 CPALEAS-NDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 9 ~~~~~~k-vLlLG~geSGKSTi~KQm 33 (463)
..+..++ |.|+|.+++||||+++.+
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L 199 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSL 199 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHH
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHH
Confidence 3445677 999999999999998875
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.91 E-value=0.00071 Score=73.17 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=23.0
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.+...+..++++|+|||.++
T Consensus 258 ~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 258 EIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 889999999888999999999999999999875
No 178
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.90 E-value=0.0014 Score=67.91 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...+||+++|.+++||||++.++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l 195 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAM 195 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHH
Confidence 35689999999999999999875
No 179
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.88 E-value=0.008 Score=62.23 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...+|+.|+|.+++||||+++.+
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l 200 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAI 200 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHH
Confidence 35689999999999999998875
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.72 E-value=0.008 Score=65.80 Aligned_cols=63 Identities=8% Similarity=-0.062 Sum_probs=46.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||.+|+...+..|..++..++++++|+|.++--+ .....++..+.. .+.|++
T Consensus 77 nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-----------~qt~~~~~~~~~----~~ip~i----------- 130 (665)
T 2dy1_A 77 FLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-----------VGTERAWTVAER----LGLPRM----------- 130 (665)
T ss_dssp EEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-----------HHHHHHHHHHHH----TTCCEE-----------
T ss_pred EEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-----------hhHHHHHHHHHH----ccCCEE-----------
Confidence 899999998878889999999999999999764311 122233443332 268899
Q ss_pred cccccceeeecchhhh
Q psy16468 278 IHCFENVTFCNSVQLF 293 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~ 293 (463)
+++||+|+.
T Consensus 131 -------lv~NKiD~~ 139 (665)
T 2dy1_A 131 -------VVVTKLDKG 139 (665)
T ss_dssp -------EEEECGGGC
T ss_pred -------EEecCCchh
Confidence 999999985
No 181
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.26 E-value=0.0039 Score=64.56 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=56.4
Q ss_pred EEEecCCcc--------ccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecC
Q psy16468 198 TMVDVGGQR--------SERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr--------~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~ 269 (463)
.+||+||+. ..+..|..+++++++||||+|.++-. . ..-..+..++.. .+.|++
T Consensus 54 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~---------~---~~d~~~~~~l~~---~~~pvi--- 115 (436)
T 2hjg_A 54 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV---------T---AADEEVAKILYR---TKKPVV--- 115 (436)
T ss_dssp EEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS---------C---HHHHHHHHHHTT---CCSCEE---
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC---------C---HHHHHHHHHHHH---cCCCEE---
Confidence 899999985 44677888999999999999976421 1 111122233332 468999
Q ss_pred Cccccccccccccceeeecchhhhchhhhhhc--cCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQYNVILN--CMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~eki~~~~--~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+......... ...+..++|--.-...++++..+++.+.+
T Consensus 116 ---------------lv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 116 ---------------LAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp ---------------EEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred ---------------EEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 99999998754221110 00222334433333456888888888877
No 182
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.04 E-value=0.0092 Score=61.76 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=60.4
Q ss_pred EEEecCCccc---------cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEec
Q psy16468 198 TMVDVGGQRS---------ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVG 268 (463)
Q Consensus 198 ~i~DvgGqr~---------eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~ 268 (463)
.+||+||+.. .+..|..+++++++|+||+|..+- .....+. +..++.. .+.|++
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~---------~~~~d~~---i~~~l~~---~~~p~i-- 114 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG---------ITKEDES---LADFLRK---STVDTI-- 114 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC---------CCHHHHH---HHHHHHH---HTCCEE--
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHHHH---HHHHHHH---cCCCEE--
Confidence 8999999753 256788889999999999997631 1111111 1112211 257899
Q ss_pred CCccccccccccccceeeecchhhhch-h--h-hhhccCCccccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 269 GQRSERRKWIHCFENVTFCNSVQLFSQ-Y--N-VILNCMNYTIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 269 ~~~~~~v~~~~~~~~~l~lNK~D~~~e-k--i-~~~~~~~l~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+... . + .......+..++|--.-...++++..+.+...+
T Consensus 115 ----------------lv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 115 ----------------LVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp ----------------EEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------EEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 99999998643 1 1 111000222334433333456888888888877
No 183
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.02 E-value=0.012 Score=57.73 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=60.5
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||+ |...+..|..++.+++++|+|+|+++-+. ..+.++.-+...+. .+.|++
T Consensus 66 ~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~------s~~~l~~~l~~~~~-------~~~pii----------- 119 (301)
T 1u0l_A 66 VIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET------STYIIDKFLVLAEK-------NELETV----------- 119 (301)
T ss_dssp EEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC------CHHHHHHHHHHHHH-------TTCEEE-----------
T ss_pred EEEEE--ccccceeeccccccCCEEEEEEeCCCCCC------CHHHHHHHHHHHHH-------CCCCEE-----------
Confidence 88999 77777889999999999999999885320 11222222222111 368999
Q ss_pred cccccceeeecchhhhchhh----hhhccCCc---cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 278 IHCFENVTFCNSVQLFSQYN----VILNCMNY---TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~eki----~~~~~~~l---~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+.- ... +..+ ..+|+--.-...+++++..++..++
T Consensus 120 -------lv~NK~DL~~~~~v~~~~~~-~~~~~~~~~~~~~SAktg~gv~~lf~~l~gei 171 (301)
T 1u0l_A 120 -------MVINKMDLYDEDDLRKVREL-EEIYSGLYPIVKTSAKTGMGIEELKEYLKGKI 171 (301)
T ss_dssp -------EEECCGGGCCHHHHHHHHHH-HHHHTTTSCEEECCTTTCTTHHHHHHHHSSSE
T ss_pred -------EEEeHHHcCCchhHHHHHHH-HHHHhhhCcEEEEECCCCcCHHHHHHHhcCCe
Confidence 9999999865321 111 0011 2334433333346788887776554
No 184
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.62 E-value=0.018 Score=61.30 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=50.3
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+...+..|..++..++++|+|+|.++.. ......++..+.. .+.|++
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~-----------~~~t~~~~~~~~~----~~iPii----------- 138 (528)
T 3tr5_A 85 NLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGV-----------EPRTIKLMEVCRL----RHTPIM----------- 138 (528)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-----------CHHHHHHHHHHHT----TTCCEE-----------
T ss_pred EEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCC-----------CHHHHHHHHHHHH----cCCCEE-----------
Confidence 99999999988889999999999999999987531 1234455555443 258999
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 139 -------vviNK~Dl~~ 148 (528)
T 3tr5_A 139 -------TFINKMDRDT 148 (528)
T ss_dssp -------EEEECTTSCC
T ss_pred -------EEEeCCCCcc
Confidence 9999999853
No 185
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.61 E-value=0.02 Score=57.57 Aligned_cols=107 Identities=8% Similarity=0.061 Sum_probs=63.6
Q ss_pred EEEecCCccc-------cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhc-CCCCCCCeeEecC
Q psy16468 198 TMVDVGGQRS-------ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIIT-YPWFQHSMVDVGG 269 (463)
Q Consensus 198 ~i~DvgGqr~-------eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~-~~~~~~~~il~~~ 269 (463)
.++|++|+-. ....|....+.++.+|+|+|+++.+ ..+.+++...+.+.+.. .+.+.+.|++
T Consensus 209 ~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l~~~p~i--- 278 (342)
T 1lnz_A 209 VMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRLTERPQI--- 278 (342)
T ss_dssp EEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSSTTTSCBC---
T ss_pred EEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhhcCCCEE---
Confidence 8999999632 1233334445699999999998632 12223333334444443 2346788999
Q ss_pred Cccccccccccccceeeecchhhhchh--hhhhccCCc---cccCCCCCCCcccHHHHHHHHHHHh
Q psy16468 270 QRSERRKWIHCFENVTFCNSVQLFSQY--NVILNCMNY---TIVPPLHTGPQRDAIAAREFILRMT 330 (463)
Q Consensus 270 ~~~~~v~~~~~~~~~l~lNK~D~~~ek--i~~~~~~~l---~~~fp~f~g~~~~~~~a~~fi~~~f 330 (463)
+++||+|+..+. +... ...+ ..+|+--.-....+++..++|.+..
T Consensus 279 ---------------lV~NK~Dl~~~~e~~~~l-~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 279 ---------------IVANKMDMPEAAENLEAF-KEKLTDDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp ---------------BEEECTTSTTHHHHHHHH-HHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred ---------------EEEECccCCCCHHHHHHH-HHHhhcCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 999999987542 1111 0012 2345444334456888888887776
No 186
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=95.11 E-value=0.036 Score=56.54 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=29.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|+....+.+...+..++++|+|+|.++
T Consensus 69 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 69 AHTDCPGHADYVKNMITGTAPLDGCILVVAAND 101 (397)
T ss_dssp EEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT
T ss_pred EEEECCChHHHHHHHHhhHhhCCEEEEEEECCC
Confidence 899999998777788889999999999999875
No 187
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=95.10 E-value=0.036 Score=56.60 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.1
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+....+.+...+..++++|+|+|.++
T Consensus 78 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~ 110 (405)
T 2c78_A 78 SHVDCPGHADYIKNMITGAAQMDGAILVVSAAD 110 (405)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT
T ss_pred EEEECCChHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 899999998888888888999999999999875
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.02 E-value=0.011 Score=52.98 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=16.6
Q ss_pred eEEEECCCCCChhHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQ 32 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQ 32 (463)
-+.|+|++||||||++|.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999996
No 189
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.99 E-value=0.01 Score=53.18 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|++||||||++|.+-
T Consensus 11 ~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 190
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.83 E-value=0.014 Score=52.95 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
++.|+|+.||||||++|.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999988764
No 191
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.63 E-value=0.016 Score=52.46 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-+.|+|+.||||||++|.+.-+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999987543
No 192
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.59 E-value=0.016 Score=53.90 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=19.9
Q ss_pred CCcceeEEEECCCCCChhHHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+.++ -++|+|++||||||++|++-
T Consensus 28 ~~G~-~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGT-TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTC-EEEEECCTTSSHHHHHHHHH
T ss_pred CCCc-EEEEEeCCCCCHHHHHHHHH
Confidence 3444 47889999999999999976
No 193
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.54 E-value=0.018 Score=51.83 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
-+.|+|++||||||+++.+.-.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999876443
No 194
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.51 E-value=0.018 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=20.6
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
.+.|.|++||||||+.+.+.-..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999875544
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.51 E-value=0.018 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.|+|++||||||++|.+--++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999875443
No 196
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.47 E-value=0.019 Score=49.90 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
-|+|.|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 197
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.36 E-value=0.023 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=21.9
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.....+.|+|++||||||++|.+--++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344589999999999999999876443
No 198
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.35 E-value=0.02 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=19.0
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
+.|+|+.||||||++|.+.-++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6799999999999999876544
No 199
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.34 E-value=0.022 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
-|+|.|.+||||||+.+++.-
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 588999999999999999764
No 200
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.32 E-value=0.021 Score=51.34 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|++||||||++|.+-
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999875
No 201
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.26 E-value=0.023 Score=53.57 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.5
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
...++|+|++||||||++|.+-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999875
No 202
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.18 E-value=0.023 Score=49.67 Aligned_cols=22 Identities=18% Similarity=-0.055 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.|+|.|.+||||||+.+.+.-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987533
No 203
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.10 E-value=0.027 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.5
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
.-+.|+|+.||||||++|.+.-.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999998533
No 204
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.09 E-value=0.024 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=19.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.|+|++||||||+++.+.-.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999876443
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.97 E-value=0.024 Score=52.06 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.0
Q ss_pred CcceeEEEECCCCCChhHHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
.++ -+.|+|++||||||+++++--
T Consensus 24 ~G~-~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQA-ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSE-EEEEEESTTSSHHHHHHHHHH
T ss_pred CCc-EEEEECCCCCCHHHHHHHHHH
Confidence 444 588999999999999999853
No 206
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.96 E-value=0.038 Score=49.49 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=22.6
Q ss_pred cCCCCCCcceeEEEECCCCCChhHHHHHHH
Q psy16468 5 HRNSCPALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 5 ~~~~~~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.+..+.....-++|.|.+||||||+.+.+.
T Consensus 5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp ---CCCSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 344555566779999999999999999874
No 207
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.87 E-value=0.03 Score=51.34 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
+|+|.|++||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 208
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.87 E-value=0.028 Score=51.58 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=20.3
Q ss_pred CCCCcceeEEEECCCCCChhHHHHHHHHh
Q psy16468 8 SCPALEASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 8 ~~~~~~~kvLlLG~geSGKSTi~KQmrii 36 (463)
+++.++ -+.|+|++||||||++|.+-=+
T Consensus 16 ~i~~Ge-i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGR-VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHhh
Confidence 445555 4789999999999999987533
No 209
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.85 E-value=0.029 Score=49.61 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.6
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
..++|+|.+||||||+.+.+.-.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999987543
No 210
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.81 E-value=0.036 Score=48.98 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.1
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
-|+|.|.+||||||+.|.+.--.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999864443
No 211
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.74 E-value=0.032 Score=51.17 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
+|+|.|++||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.74 E-value=0.032 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=20.1
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
+.++ -+.|+|+.||||||++|.+--
T Consensus 31 ~~Ge-~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAI-MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCE-EEEEECSTTSSHHHHHHHHHH
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHHH
Confidence 3444 588999999999999998653
No 213
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.72 E-value=0.036 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
...|+|.|.+||||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999985
No 214
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.68 E-value=0.032 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=20.6
Q ss_pred ceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
...|+|.|.+||||||+.+.+.-.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999885433
No 215
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.65 E-value=0.032 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.|+|++||||||++|.+--++
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999875444
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.60 E-value=0.031 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCChhHHHHHHHHh
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii 36 (463)
+.++.|+|+.||||||+++.+--+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999998876533
No 217
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.59 E-value=0.047 Score=49.58 Aligned_cols=25 Identities=32% Similarity=0.145 Sum_probs=21.2
Q ss_pred CcceeEEEECCCCCChhHHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
.....|+|.|..||||||+.+.+.-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 218
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.51 E-value=0.036 Score=50.51 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
.-+.|+|.+||||||+.|.+-
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999875
No 219
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.50 E-value=0.038 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=19.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.|+|+|.+||||||+.|.+.-..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 78999999999999999886433
No 220
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.49 E-value=0.037 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.0
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
..+.|+|+.||||||++|.+.-+++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999998875543
No 221
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.48 E-value=0.036 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
.|+|.|.+||||||+.+.+.-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 222
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.48 E-value=0.04 Score=50.83 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=21.5
Q ss_pred cceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+...|+|.|.+||||||+.+.+.--+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999886433
No 223
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.45 E-value=0.037 Score=51.95 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=20.7
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+.++ -+.|+|++||||||++|.+.-+.
T Consensus 14 ~~G~-ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGT-LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCC-EEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCc-EEEEECCCCCCHHHHHHHHhccC
Confidence 3444 57899999999999999876443
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.44 E-value=0.049 Score=50.08 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=19.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
-+.|+|++||||||+++.+.-.+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48899999999999999886544
No 225
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.42 E-value=0.037 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=18.7
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ -+.|+|+.||||||++|-+-
T Consensus 30 ~Ge-~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 30 EGE-FVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHT
T ss_pred CCC-EEEEECCCCCcHHHHHHHHh
Confidence 444 58899999999999987654
No 226
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.42 E-value=0.04 Score=48.89 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
+|+|.|.+||||||+.|.+--
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999753
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.41 E-value=0.041 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.0
Q ss_pred cceeEEEECCCCCChhHHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmri 35 (463)
...-++|.|++||||||+.+.+.-
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 334689999999999999998753
No 228
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.38 E-value=0.05 Score=49.35 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=22.3
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.....|+|.|.+||||||+.+.+.--+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455689999999999999999986433
No 229
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.36 E-value=0.044 Score=49.22 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.|+|.|..||||||+.+.+.-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999988643
No 230
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.34 E-value=0.044 Score=51.35 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=22.4
Q ss_pred cCCCCCCcceeEEEECCCCCChhHHHHHHHH
Q psy16468 5 HRNSCPALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 5 ~~~~~~~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
|++..+.....|.|.|..||||||+.+.+.-
T Consensus 8 ~~~~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 8 HDDDDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ------CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCcccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5666677777899999999999999998764
No 231
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.32 E-value=0.036 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.++|.|++|+||||+++.+-
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999874
No 232
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.31 E-value=0.056 Score=48.94 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=22.9
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.....|+|.|..||||||+.+.+.--+
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34555678999999999999999886333
No 233
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.30 E-value=0.049 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.7
Q ss_pred CcceeEEEECCCCCChhHHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
.....|+|.|++||||||+.+.+.-
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999853
No 234
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.30 E-value=0.044 Score=48.67 Aligned_cols=22 Identities=14% Similarity=-0.049 Sum_probs=19.6
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
..|+|.|.+||||||+.+.+.-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 235
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.30 E-value=0.049 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=19.3
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
..|+|.|.+||||||+.+.+.-
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 236
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.27 E-value=0.051 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.0
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
..|.|.|+.||||||+.|.+.-.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999998864443
No 237
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.20 E-value=0.044 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
+|.|.|..||||||+.|.+.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999875
No 238
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.19 E-value=0.046 Score=48.69 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.2
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
..|+|.|.+||||||+.+.+.-
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
No 239
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.13 E-value=0.054 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.2
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
..|+|.|.+||||||+.+.+.--
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998643
No 240
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.11 E-value=0.053 Score=47.36 Aligned_cols=22 Identities=27% Similarity=0.099 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
+|+|.|..||||||+.+.+.--
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 241
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.07 E-value=0.041 Score=51.65 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|+.||||||++|-+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999987653
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.06 E-value=0.046 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=19.2
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ -++|+|++||||||+++++-
T Consensus 22 ~G~-~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGF-FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHH
T ss_pred CCC-EEEEEcCCCCCHHHHHHHHH
Confidence 444 47889999999999999975
No 243
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.06 E-value=0.043 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.9
Q ss_pred ceeEEEECCCCCChhHHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmri 35 (463)
..-|+|.|.+||||||+.+.+.-
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999864
No 244
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.02 E-value=0.048 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=19.9
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+|+|.|.+||||||+.+.+.--+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986433
No 245
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.98 E-value=0.031 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.9
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
....+++|+|.++|||||+++.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 45569999999999999998774
No 246
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.97 E-value=0.049 Score=51.02 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=16.7
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
.+.|+|+.||||||++|-+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999997765
No 247
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.96 E-value=0.048 Score=51.91 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988764
No 248
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.89 E-value=0.055 Score=49.21 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
.+.|+|+.||||||+.+.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 249
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.87 E-value=0.05 Score=51.59 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988753
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.87 E-value=0.05 Score=52.99 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|+.||||||++|.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999988764
No 251
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.86 E-value=0.042 Score=54.00 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=19.5
Q ss_pred CCcceeEEEECCCCCChhHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
..-.++|+|+|++|+||||+++.+
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L 38 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSL 38 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHH
Confidence 356789999999999999998885
No 252
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.85 E-value=0.047 Score=50.85 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988764
No 253
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.85 E-value=0.12 Score=58.06 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=48.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccc
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~ 277 (463)
.+||++|+..-+..|..++..++++|+|+|.++-.+ ..+...+..+.. .+.|++
T Consensus 101 ~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~-----------~qt~~~~~~~~~----~~~p~i----------- 154 (842)
T 1n0u_A 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-----------VQTETVLRQALG----ERIKPV----------- 154 (842)
T ss_dssp EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-----------HHHHHHHHHHHH----TTCEEE-----------
T ss_pred EEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC-----------HHHHHHHHHHHH----cCCCeE-----------
Confidence 899999998888889999999999999999875421 122334444433 357899
Q ss_pred cccccceeeecchhhhc
Q psy16468 278 IHCFENVTFCNSVQLFS 294 (463)
Q Consensus 278 ~~~~~~~l~lNK~D~~~ 294 (463)
+++||+|+..
T Consensus 155 -------lviNK~D~~~ 164 (842)
T 1n0u_A 155 -------VVINKVDRAL 164 (842)
T ss_dssp -------EEEECHHHHH
T ss_pred -------EEEECCCcch
Confidence 9999999873
No 254
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.84 E-value=0.055 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+..+++++|.++|||||++.++-
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46899999999999999998864
No 255
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.81 E-value=0.069 Score=50.72 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=23.1
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
.....++|.|.+||||||+.+.+.-.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456899999999999999999865444
No 256
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.81 E-value=0.052 Score=50.13 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=23.6
Q ss_pred cceeEEEECCCCCChhHHHHHHHHhcC-CCCCH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMRIIHG-SGYSD 43 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmrii~~-~g~s~ 43 (463)
....|+|.|.+||||||+.+.+.--++ ..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345799999999999999999853333 33443
No 257
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.80 E-value=0.054 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.3
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
...|+|.|.+||||||+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3469999999999999999875
No 258
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.80 E-value=0.054 Score=48.26 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
.|+|.|.+||||||+.+.+.-..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999865433
No 259
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.77 E-value=0.052 Score=51.84 Aligned_cols=20 Identities=40% Similarity=0.508 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988764
No 260
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.74 E-value=0.052 Score=52.03 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.3
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|+.||||||++|-+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999987653
No 261
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.74 E-value=0.052 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.177 Sum_probs=20.2
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
+.++ .++++|+.||||||+++.+--
T Consensus 23 ~~g~-~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMG-LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSE-EEEEECSTTCSHHHHHHHHHH
T ss_pred CCCC-EEEEECCCCccHHHHHHHHHH
Confidence 3444 689999999999999997643
No 262
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.71 E-value=0.054 Score=51.42 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999977653
No 263
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.69 E-value=0.055 Score=52.14 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=17.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|+.||||||++|.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988653
No 264
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.67 E-value=0.058 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.8
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-+-
T Consensus 27 ~Ge-~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 27 PNS-IIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TTE-EEEEECCTTSSHHHHHHHHT
T ss_pred CCC-EEEEECCCCCCHHHHHHHHh
Confidence 344 68899999999999987754
No 265
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.63 E-value=0.056 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.6
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ -+.|+|+.||||||++|-+-
T Consensus 40 ~Ge-i~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 40 EGE-IFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHT
T ss_pred CCc-EEEEECCCCCCHHHHHHHHh
Confidence 444 57899999999999977653
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.61 E-value=0.058 Score=50.82 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999987653
No 267
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.61 E-value=0.062 Score=47.80 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
.|.|.|..||||||+.+.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998863
No 268
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.61 E-value=0.075 Score=47.71 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.5
Q ss_pred ceeEEEECCCCCChhHHHHHHHHh
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii 36 (463)
...|+|.|..||||||+.+.+.-.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999988643
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.58 E-value=0.057 Score=51.56 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988754
No 270
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.55 E-value=0.06 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.6
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
+.++ -++|.|++||||||+++|+-.
T Consensus 18 ~~G~-~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGV-LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTS-EEEEECSTTSSHHHHHHHHHH
T ss_pred cCCE-EEEEECCCCCCHHHHHHHHHH
Confidence 3444 489999999999999999754
No 271
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.55 E-value=0.059 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999988753
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.53 E-value=0.058 Score=52.13 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999987754
No 273
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.52 E-value=0.068 Score=46.81 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.|+|.|..||||||+.+.+.-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988643
No 274
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.50 E-value=0.061 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=20.4
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
..|+|.|.+||||||+.+.+.--+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999986443
No 275
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.49 E-value=0.077 Score=49.32 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.1
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
.|+|+|++||||+|..+.+---|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999988764443
No 276
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.49 E-value=0.07 Score=49.84 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=22.4
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.....|+|.|..||||||+.+.+.--+
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455689999999999999999886433
No 277
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.44 E-value=0.052 Score=48.04 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=15.8
Q ss_pred ceeEEEECCCCCChhHHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmri 35 (463)
...|+|.|.+||||||+.+.+.-
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999853
No 278
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.43 E-value=0.061 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCChhHHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmri 35 (463)
...|+|.|.+||||||+.+.+.-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.41 E-value=0.062 Score=51.91 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=17.3
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|+.||||||++|-+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 57899999999999988654
No 280
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.39 E-value=0.063 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=19.4
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
..|+|.|..||||||+.+.+.-
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.38 E-value=0.064 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.0
Q ss_pred ceeEEEECCCCCChhHHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmri 35 (463)
...|+|.|.+||||||+.+.+.-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999863
No 282
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.38 E-value=0.062 Score=52.05 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988754
No 283
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.38 E-value=0.063 Score=51.49 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999987653
No 284
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.38 E-value=0.07 Score=47.73 Aligned_cols=21 Identities=38% Similarity=0.368 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
-|.|.|..||||||+.+.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998763
No 285
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.36 E-value=0.043 Score=51.12 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=13.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|+.||||||++|.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998875
No 286
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.34 E-value=0.063 Score=51.62 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988764
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.32 E-value=0.097 Score=51.81 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.++ .+.|+|+.||||||+++-+--++
T Consensus 123 i~~Ge-~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKN-CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCS-EEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCC-EEEEECCCCCcHHHHHHHHhhhc
Confidence 34455 68999999999999999876444
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.31 E-value=0.081 Score=48.52 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.9
Q ss_pred EEEECCCCCChhHHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmri 35 (463)
|+|.|++||||||+++.+.-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998753
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.28 E-value=0.078 Score=47.64 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=22.1
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHh
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii 36 (463)
.+...|.|.|..||||||+.+.+.-.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44568999999999999999998754
No 290
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.26 E-value=0.073 Score=53.44 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=22.6
Q ss_pred ceeEEEECCCCCChhHHHHHHHHhcCC
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRIIHGS 39 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii~~~ 39 (463)
.-++.|+|++||||||++|.+--++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999997766543
No 291
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.24 E-value=0.066 Score=51.62 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999977653
No 292
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.18 E-value=0.08 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.1
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-|+|.|..||||||+.|.+.--
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998643
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.17 E-value=0.069 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=18.9
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ .+.|+|+.||||||++|-+-
T Consensus 45 ~Ge-~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 45 PGE-VHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHH
T ss_pred CCC-EEEEECCCCCCHHHHHHHHh
Confidence 444 58899999999999988754
No 294
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.15 E-value=0.073 Score=51.41 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 295
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.13 E-value=0.071 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.3
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.-+.|+|+.||||||++|.+.-+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999886543
No 296
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.10 E-value=0.098 Score=49.49 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=22.2
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
......|.|.|+.||||||+.+.+.-..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999887543
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.08 E-value=0.072 Score=51.89 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999977653
No 298
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.06 E-value=0.074 Score=50.73 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=17.3
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
++|.|++||||||+.+++-
T Consensus 4 i~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 7899999999999999874
No 299
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.05 E-value=0.077 Score=48.58 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
++.|+|+.||||||+++.+-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 68899999999999988754
No 300
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.03 E-value=0.087 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=20.8
Q ss_pred CcceeEEEECCCCCChhHHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
....-+.|.|.+||||||+++.+.-
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999998753
No 301
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.01 E-value=0.069 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=20.9
Q ss_pred ceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
...|+|.|.+||||||+.+.+.--+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999886433
No 302
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.94 E-value=0.086 Score=47.50 Aligned_cols=24 Identities=29% Similarity=0.169 Sum_probs=20.5
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
..|.|.|..||||||+.+.+.--+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999999886443
No 303
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.93 E-value=0.088 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=19.2
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.|+|.|.+||||||+.+.+.--
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988643
No 304
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.92 E-value=0.087 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCChhHHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmri 35 (463)
...|+|.|..||||||+.+.+.-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 305
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.91 E-value=0.1 Score=50.51 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
.+.+...|.|.|..||||||+.+.+.-
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 445667899999999999999999884
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.88 E-value=0.076 Score=52.54 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.7
Q ss_pred ceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
..-+.|+|+.||||||++|.+.-+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhc
Confidence 3468899999999999999876554
No 307
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.88 E-value=0.081 Score=48.90 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
-++|+|++||||||+++|+-.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999764
No 308
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.83 E-value=0.097 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.2
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
..+.|.|..||||||+.+.+.-
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998763
No 309
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.83 E-value=0.1 Score=50.82 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.0
Q ss_pred CcceeEEEECCCCCChhHHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmri 35 (463)
....-++|.|++||||||+.+.+.-
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998754
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.81 E-value=0.1 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.4
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
-.+|+|+.||||||+++.+..+-.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999876543
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.68 E-value=0.084 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.8
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
..+.|.|++||||||+.+.+.-.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999987643
No 312
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.63 E-value=0.092 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=19.3
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
.-|+|.|.+||||||+.+++.-
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998763
No 313
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.58 E-value=0.1 Score=50.43 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=17.7
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
+||+|++|+||||++|.+-
T Consensus 47 vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 9999999999999999864
No 314
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.55 E-value=0.08 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHh
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii 36 (463)
+.++ -++|+|++||||||+++|+-..
T Consensus 33 ~~G~-~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGE-VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTC-EEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCe-EEEEEeCCCCCHHHHHHHHHHH
Confidence 3444 4789999999999999997543
No 315
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.51 E-value=0.095 Score=48.57 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=19.7
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
--+.|+|++||||||+++.+.-.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 357889999999999999876443
No 316
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.37 E-value=0.1 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
..|.|.|+.||||||++|.+-
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998874
No 317
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.36 E-value=0.098 Score=47.95 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
.-++|.|..||||||+.+.+.-
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998753
No 318
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=91.36 E-value=0.26 Score=57.17 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++|+..-.+.+...+..++++|+|+|.++-
T Consensus 362 ~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 362 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp EEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence 9999999988888888899999999999998753
No 319
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.34 E-value=0.12 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=18.0
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
|+|+|++||||+|..+.+.--|
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999998875444
No 320
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.12 E-value=0.094 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
-++|+|++||||||+++|+-.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999763
No 321
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.04 E-value=0.11 Score=53.59 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=20.6
Q ss_pred CCCcceeEEEECCCCCChhHHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...-.++|+|+|.+||||||+++.+
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L 51 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSL 51 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHH
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHH
Confidence 3455678999999999999998875
No 322
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.04 E-value=0.1 Score=51.21 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 67899999999999987653
No 323
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.02 E-value=0.095 Score=53.08 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|++||||||++|.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
Confidence 47899999999999988765
No 324
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.02 E-value=0.1 Score=52.69 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|++||||||++|-+-
T Consensus 43 ~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999988764
No 325
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.00 E-value=0.11 Score=47.63 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=17.4
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
+|++|..+|||||+..|+-
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7999999999999999864
No 326
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.96 E-value=0.12 Score=45.06 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.3
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.+||.|++|+||||+++++-
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 358999999999999998764
No 327
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.96 E-value=0.12 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=19.3
Q ss_pred CCCcc-eeEEEECCCCCChhHHHHHH
Q psy16468 9 CPALE-ASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 9 ~~~~~-~kvLlLG~geSGKSTi~KQm 33 (463)
++.++ .++.|+|+.||||||+++.+
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L 62 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTL 62 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHH
Confidence 34444 36999999999999997765
No 328
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.92 E-value=0.11 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=18.5
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
++|+|++|+||||++|.+--.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999987533
No 329
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.88 E-value=0.14 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCChhHHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmri 35 (463)
..-|.|.|..||||||+.+.+.-
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 330
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.85 E-value=0.11 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=18.7
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ -+.|+|++||||||++|-+-
T Consensus 28 ~Ge-~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 28 DGE-FVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHH
T ss_pred CCC-EEEEEcCCCchHHHHHHHHH
Confidence 344 47899999999999988765
No 331
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.84 E-value=0.11 Score=52.45 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
-++++|+.||||||+++-|
T Consensus 125 ~i~I~GptGSGKTTlL~~l 143 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAM 143 (356)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7999999999999999976
No 332
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.80 E-value=0.12 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
-|+|.|.+||||||+.+.+.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 333
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.72 E-value=0.12 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=19.4
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHh
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii 36 (463)
.++ -+.|+|++||||||++|-+-=+
T Consensus 28 ~Ge-~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGE-FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHHTS
T ss_pred CCC-EEEEEcCCCchHHHHHHHHHcC
Confidence 344 4789999999999998876533
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.72 E-value=0.13 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.2
Q ss_pred ceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
..-+.|+|+.||||||+++.+.-+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999887654
No 335
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.69 E-value=0.12 Score=52.62 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|++||||||++|-+-
T Consensus 39 ~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 57899999999999988765
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.69 E-value=0.12 Score=52.41 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|++||||||++|-+-
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
Confidence 47899999999999988764
No 337
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.67 E-value=0.059 Score=48.99 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-|.+.|..||||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999875
No 338
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.65 E-value=0.16 Score=46.60 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=23.5
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
++..-|.|.|..||||||+.+.+.-.++
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999886543
No 339
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.65 E-value=0.12 Score=52.60 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|++||||||++|-+-
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHH
Confidence 47899999999999988764
No 340
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.49 E-value=0.13 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.5
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.....|.|+|.+||||||+++.+-
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHH
Confidence 346789999999999999998863
No 341
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.39 E-value=0.14 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.6
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+..+++++|.++|||||++..+-
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 34689999999999999988753
No 342
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.27 E-value=0.13 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.4
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
...++|+++|.+|+||||+++.+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSL 57 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHH
Confidence 45689999999999999998885
No 343
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.21 E-value=0.2 Score=49.88 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCcceeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
.....=+.|.|++||||||+++.+.-+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456689999999999999999876543
No 344
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.21 E-value=0.1 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.2
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.|+|+.||||||++|-+--++
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 78999999999999988765444
No 345
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.21 E-value=0.31 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
....+|+++|.+++||||++..+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHH
Confidence 45679999999999999999886
No 346
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.19 E-value=0.18 Score=44.05 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.0
Q ss_pred EEEECCCCCChhHHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmri 35 (463)
.++.|+.|||||||++.|..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999874
No 347
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.15 E-value=0.14 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=20.5
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.++ -+.|+|++||||||++|-+--+.
T Consensus 53 ~Ge-i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQ-IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCC-EEEEEcCCCchHHHHHHHHhcCC
Confidence 344 47899999999999988776544
No 348
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.15 E-value=0.2 Score=49.00 Aligned_cols=27 Identities=26% Similarity=-0.003 Sum_probs=22.4
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.....|.|.|+.||||||+++.+.-++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455679999999999999999876544
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.14 E-value=0.13 Score=45.07 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|+.||||||+++.+-
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999988764
No 350
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.08 E-value=0.1 Score=52.55 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|++||||||++|-+-
T Consensus 28 ~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 57899999999999988764
No 351
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.04 E-value=0.15 Score=48.86 Aligned_cols=22 Identities=41% Similarity=0.273 Sum_probs=19.4
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
-.|.|+|..||||||+.|.+--
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998753
No 352
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.97 E-value=0.16 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.1
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
.-.+||.|++|+||||+++++-
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999864
No 353
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.97 E-value=0.16 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.9
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
....+|+|+|.+||||||+.+++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999875
No 354
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.89 E-value=0.16 Score=48.67 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=18.5
Q ss_pred EEEECCCCCChhHHHHHHHHh
Q psy16468 16 NDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii 36 (463)
++|+|++||||||++|.+--.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999987543
No 355
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.89 E-value=0.15 Score=51.72 Aligned_cols=20 Identities=40% Similarity=0.272 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++++|+.||||||+++.+-
T Consensus 138 ~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999864
No 356
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.88 E-value=0.13 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.++|+|+.||||||+++.|--++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 78999999999999999875443
No 357
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.82 E-value=0.086 Score=47.55 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
.+.++|.+||||||+++.+--+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999886533
No 358
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.81 E-value=0.12 Score=51.41 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++++|+.||||||+++-|-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988754
No 359
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.74 E-value=0.15 Score=52.58 Aligned_cols=20 Identities=30% Similarity=0.096 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++++|+.||||||+++.|-
T Consensus 169 ii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999864
No 360
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.68 E-value=0.16 Score=46.98 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.1
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
-++|+|++||||||++.|+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999998886
No 361
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.56 E-value=0.17 Score=52.40 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=22.4
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+++++ ++.|+|+.||||||+++++--+.
T Consensus 154 i~~Gq-~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQ-RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTC-EEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCC-EEEEECCCCCCHHHHHHHHhccc
Confidence 34455 78999999999999999876544
No 362
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.56 E-value=0.23 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.1
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
....+|+++|..+|||||++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l 44 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENI 44 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHH
Confidence 34568999999999999999876
No 363
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.51 E-value=0.19 Score=47.76 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.8
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
..+.+.|.|++||||||+.+.+-
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999875
No 364
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.50 E-value=0.12 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
.-+.|.|..||||||++|.+.-.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46889999999999998876533
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.44 E-value=0.17 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=19.7
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
--+.|+|++||||||+++-+--++
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999998875443
No 366
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.40 E-value=0.15 Score=52.05 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|++||||||++|.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 58899999999999988764
No 367
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.34 E-value=0.15 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=18.9
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
.++ -++|+|++||||||+++|+
T Consensus 38 ~Ge-~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGR-STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTS-EEEEEESTTSSHHHHHHHH
T ss_pred CCe-EEEEEcCCCCCHHHHHHHH
Confidence 444 5889999999999999993
No 368
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.31 E-value=0.18 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.1
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
--++|+|++||||||+++-+--+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999876533
No 369
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.18 E-value=0.1 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=18.6
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ -+.|+|++||||||++|-+-
T Consensus 30 ~Ge-~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 30 NGE-RFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp TTC-EEEEECSCHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCcHHHHHHHHh
Confidence 344 47899999999999988754
No 370
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.18 E-value=0.16 Score=52.98 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++|+|+.||||||++|-+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999999988754
No 371
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.11 E-value=0.2 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
.|.|.|..||||||+.+.+.-..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999865443
No 372
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.07 E-value=0.2 Score=47.17 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.+||.|++|+||||+++.+-
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 359999999999999998864
No 373
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.07 E-value=0.18 Score=50.64 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=21.5
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
+++ ++.|+|+.||||||++|+|--+.
T Consensus 70 ~Gq-~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQ-RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTC-EEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcCC
Confidence 444 79999999999999999876444
No 374
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.00 E-value=0.21 Score=45.11 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.3
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.+.|..||||||+++.+-
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999988753
No 375
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.99 E-value=0.22 Score=46.79 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=20.9
Q ss_pred cceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
...-|++.|++||||||+++.+.-..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999876433
No 376
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.84 E-value=0.17 Score=44.14 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.+||.|++|+||||+++++-
T Consensus 44 ~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 368999999999999998864
No 377
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.64 E-value=0.19 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.0
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
-++|+|++||||||+++|+-...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987554
No 378
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.53 E-value=0.35 Score=45.25 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=26.1
Q ss_pred cccCCCCCCcceeEEEECCCCCChhHHHHHHH
Q psy16468 3 SVHRNSCPALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 3 ~~~~~~~~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+-|.+--..+..-+++.|.||+||||++..+-
T Consensus 4 ~~~~~~~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 4 SHHHHHHGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCCCCTTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccccccCCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 34555566788899999999999999998874
No 379
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.43 E-value=0.27 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.3
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
...++ .+.|+|+.||||||++|-+-
T Consensus 44 i~~Ge-~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 44 VKEGM-VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp CCTTS-EEEEECCTTSSHHHHHHHHH
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHh
Confidence 34555 68999999999999987765
No 380
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.39 E-value=0.24 Score=44.66 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+||.|++|+||||+++.+-
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998864
No 381
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.36 E-value=0.23 Score=48.58 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.++|++||||||+++.+-
T Consensus 171 iv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHS
T ss_pred eEEEECCCCCcHHHHHHHhc
Confidence 57899999999999988764
No 382
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.30 E-value=0.24 Score=44.56 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.++|.|++|+||||+++.+-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999988754
No 383
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.30 E-value=0.25 Score=44.10 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=17.6
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
+||.|++|+||||+++++-
T Consensus 41 ~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999999864
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.12 E-value=0.24 Score=48.98 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++|.|++|+||||++|-+-
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 58999999999999998764
No 385
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.10 E-value=0.24 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
..+.|+|++||||||+++.+-
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998863
No 386
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.06 E-value=0.24 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.4
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
-+.|+|++||||||+++.+- +.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999987 54
No 387
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=87.83 E-value=0.48 Score=47.25 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=45.1
Q ss_pred EEEecCCcccc-------------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCe
Q psy16468 198 TMVDVGGQRSE-------------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSM 264 (463)
Q Consensus 198 ~i~DvgGqr~e-------------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~ 264 (463)
.+||++|+... +.....++.+.++||+|++.+.-+. .+ .+.+.+...+.. .+.+
T Consensus 139 ~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~-------~~--~~~~~l~~~~~~----~~~~ 205 (360)
T 3t34_A 139 TLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL-------AT--SDAIKISREVDP----SGDR 205 (360)
T ss_dssp EEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG-------GG--CHHHHHHHHSCT----TCTT
T ss_pred EEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc-------CC--HHHHHHHHHhcc----cCCC
Confidence 88999998553 4455667889999999998653221 11 234445554432 3568
Q ss_pred eEecCCccccccccccccceeeecchhhhch
Q psy16468 265 VDVGGQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 265 il~~~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
++ +++||+|+..+
T Consensus 206 ~i------------------~V~nK~Dl~~~ 218 (360)
T 3t34_A 206 TF------------------GVLTKIDLMDK 218 (360)
T ss_dssp EE------------------EEEECGGGCCT
T ss_pred EE------------------EEEeCCccCCC
Confidence 88 99999998754
No 388
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.82 E-value=0.22 Score=52.66 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.++++|+.||||||+++.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999864
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.77 E-value=0.26 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=20.2
Q ss_pred cceeEEEECCCCCChhHHHHHHHHh
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmrii 36 (463)
...-+.|+|++||||||+++-+--+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999998876533
No 390
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=87.76 E-value=0.24 Score=47.36 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=41.1
Q ss_pred EEEecCCccc-------------cccccccccCcccEEE-EEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCC
Q psy16468 198 TMVDVGGQRS-------------ERRKWIHCFENVTSII-FLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHS 263 (463)
Q Consensus 198 ~i~DvgGqr~-------------eR~kW~~~f~~v~~ii-Fvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~ 263 (463)
.+||++|+.. .+..+..++.+...+| ||+|.+.-- ... +.+.+.+.+-. .+.
T Consensus 128 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~---~~~~~~~~~~~----~~~ 193 (299)
T 2aka_B 128 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL-------ANS---DALKIAKEVDP----QGQ 193 (299)
T ss_dssp EEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG-------GGC---HHHHHHHHHCT----TCS
T ss_pred eEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch-------hhh---HHHHHHHHhCC----CCC
Confidence 8999999742 2345666777777666 888876310 011 12233333321 367
Q ss_pred eeEecCCccccccccccccceeeecchhhhch
Q psy16468 264 MVDVGGQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 264 ~il~~~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
|++ +++||.|+..+
T Consensus 194 ~~i------------------~V~NK~Dl~~~ 207 (299)
T 2aka_B 194 RTI------------------GVITKLDLMDE 207 (299)
T ss_dssp SEE------------------EEEECGGGSCT
T ss_pred eEE------------------EEEEccccCCC
Confidence 899 99999998653
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.72 E-value=0.21 Score=49.21 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|.|..||||||++|.+-
T Consensus 6 v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 46789999999999999865
No 392
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.67 E-value=0.26 Score=52.05 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.3
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
--++|+|.+||||||+++.|-
T Consensus 294 eVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHH
Confidence 358899999999999988764
No 393
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.52 E-value=0.34 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
=.+|.|+.|||||||+..+..+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3588999999999999988744
No 394
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.35 E-value=0.26 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=19.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
++.|+|+.||||||++|-+--++
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999988865444
No 395
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.27 E-value=0.32 Score=43.88 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.6
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
-+.+.|..||||||++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999998775
No 396
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.16 E-value=0.29 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.4
Q ss_pred ceeEEEECCCCCChhHHHHHHHHh
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii 36 (463)
.--++|+|++||||||+++-+--+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 346899999999999998876533
No 397
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.15 E-value=0.4 Score=49.07 Aligned_cols=23 Identities=35% Similarity=0.288 Sum_probs=19.2
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
...=|+|.|.+||||||+.+++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34458889999999999999864
No 398
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=86.95 E-value=0.62 Score=51.06 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=45.3
Q ss_pred eEEEecCCccc---cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccc
Q psy16468 197 VTMVDVGGQRS---ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSE 273 (463)
Q Consensus 197 ~~i~DvgGqr~---eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~ 273 (463)
+.++|++|... ....|..++.++++||||+|.+.-. -...+..+...+.. .+.|++
T Consensus 176 l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~-----------s~~e~~~l~~~l~~---~~~~ii------- 234 (695)
T 2j69_A 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC-----------TLGERRYLENYIKG---RGLTVF------- 234 (695)
T ss_dssp EEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT-----------CHHHHHHHHHHTTT---SCCCEE-------
T ss_pred eEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc-----------chhHHHHHHHHHHh---hCCCEE-------
Confidence 38999999754 3456777889999999999976321 01223334433332 156788
Q ss_pred cccccccccceeeecchhhhch
Q psy16468 274 RRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 274 ~v~~~~~~~~~l~lNK~D~~~e 295 (463)
+++||+|+...
T Consensus 235 -----------iVlNK~Dl~~~ 245 (695)
T 2j69_A 235 -----------FLVNAWDQVRE 245 (695)
T ss_dssp -----------EEEECGGGGGG
T ss_pred -----------EEEECcccccc
Confidence 99999998754
No 399
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.93 E-value=0.3 Score=49.63 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|++||||||+++.+-
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
No 400
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.92 E-value=0.31 Score=46.30 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.+||.|++|+||||+++.+-
T Consensus 52 ~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 359999999999999999874
No 401
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=86.86 E-value=0.29 Score=54.35 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-++|+|+.||||||++|++=.+
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhh
Confidence 5889999999999999998643
No 402
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=86.84 E-value=0.42 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.6
Q ss_pred CcceeEEEECCCCCChhHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQm 33 (463)
....+|+++|..++||||++..+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~L 85 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYL 85 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 56689999999999999999885
No 403
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.78 E-value=0.32 Score=46.63 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.2
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
.-.+||.|++|+||||+++.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4579999999999999998764
No 404
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.73 E-value=0.36 Score=41.47 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.4
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
....|||.|..|+|||++.+.+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
Confidence 34569999999999999988764
No 405
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=86.53 E-value=0.31 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-++|+|+.||||||++|++=.+
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5889999999999999998653
No 406
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.40 E-value=0.36 Score=45.00 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.+||.|++|+||||+++.+-
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999999998863
No 407
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.37 E-value=0.41 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.9
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.+.++ .+.|+|+.||||||++|-+-
T Consensus 114 i~~Ge-~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 114 VKDGM-VVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp CCTTS-EEEEECCTTSSHHHHHHHHT
T ss_pred CCCCC-EEEEECCCCChHHHHHHHHh
Confidence 34555 68999999999999977654
No 408
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.31 E-value=0.33 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
++.++|+.||||||++|-+--++
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 78999999999999988764443
No 409
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.28 E-value=0.36 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.5
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
....++.|+|.+++||||+++.+-
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Lt 41 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAIT 41 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999998864
No 410
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.26 E-value=0.31 Score=49.90 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|++||||||+++|+-
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999874
No 411
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.13 E-value=0.35 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.9
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
--+.|+|+.||||||+++.+--+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999876443
No 412
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.04 E-value=0.37 Score=48.71 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|++||||||+++.+-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58899999999999988765
No 413
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=85.97 E-value=0.37 Score=48.83 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=25.6
Q ss_pred EEEecCCcccc-------ccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRSE-------RRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~e-------R~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.++|++|+... ..++...++++++|++|+|.++
T Consensus 72 ~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 72 EFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred EEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 88999998532 2455556789999999999986
No 414
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.89 E-value=0.37 Score=46.78 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
-+||.|++|+||||++|.+--
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 599999999999999998653
No 415
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=85.88 E-value=0.39 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-++|+|+.+|||||++||+-++
T Consensus 791 i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5889999999999999998655
No 416
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=85.63 E-value=0.36 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.2
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
++.|+|+.||||||++|-+--++
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 78999999999999988764333
No 417
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.48 E-value=0.37 Score=54.63 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|+.+|||||++||+-
T Consensus 664 i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999973
No 418
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.42 E-value=0.4 Score=46.70 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.++|.|++|+||||+++.+-
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 469999999999999999864
No 419
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.30 E-value=0.52 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=18.9
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.++ -+.|+|+.||||||++|-+-
T Consensus 102 ~Ge-i~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 102 PGQ-VLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp TTS-EEEEECCTTSSHHHHHHHHH
T ss_pred CCC-EEEEECCCCChHHHHHHHHh
Confidence 344 68999999999999977654
No 420
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.21 E-value=0.38 Score=49.49 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|..||||||+++.+-
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68899999999999988764
No 421
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=85.18 E-value=0.56 Score=44.43 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=20.9
Q ss_pred CcceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
++..++-++|++||||||+.+.+.--+
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999875444
No 422
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.15 E-value=0.39 Score=46.96 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=19.5
Q ss_pred ceeEEEECCCCCChhHHHHHHHHh
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii 36 (463)
.--++++|++||||||+++.+-..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999998876533
No 423
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.10 E-value=0.57 Score=49.83 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+-|+|+.||||||++|-+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999977654
No 424
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.08 E-value=0.59 Score=42.55 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.0
Q ss_pred eeEEEECCCCCChhHHHHHHHHhcC
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
..|.|.|..||||||+.+.+.-.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999998865443
No 425
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.03 E-value=0.34 Score=47.18 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=17.4
Q ss_pred ceeEEEECCCCCChhHHHHHHHHh
Q psy16468 13 EASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmrii 36 (463)
..-|.|-|+.||||||+.+.+.-.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999998754
No 426
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=85.00 E-value=0.38 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhHHHHHHHHhc
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.+.|+|+.||||||++|-+--++
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999988764333
No 427
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=84.85 E-value=0.48 Score=47.97 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=26.4
Q ss_pred EEEecCCccc-------cccccccccCcccEEEEEEeccc
Q psy16468 198 TMVDVGGQRS-------ERRKWIHCFENVTSIIFLVALSE 230 (463)
Q Consensus 198 ~i~DvgGqr~-------eR~kW~~~f~~v~~iiFvv~ls~ 230 (463)
.+||++|+.. ...++..+++++++|++|+|.++
T Consensus 69 ~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 69 EFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 8899999853 23455666789999999999986
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.85 E-value=0.45 Score=47.86 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEECCCCCChhHHHHHHH-HhcCCC
Q psy16468 16 NDFVGTGESGKSTFIKQMR-IIHGSG 40 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr-ii~~~g 40 (463)
.+|+|+.||||||++..+- .+++.+
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~g~~ 51 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALFGNG 51 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc
Confidence 6699999999999999876 345544
No 429
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=84.71 E-value=0.44 Score=47.47 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
.+|+++|..+|||||++..+-
T Consensus 35 p~I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 399999999999999998863
No 430
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.63 E-value=0.4 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.5
Q ss_pred EEEECCCCCChhHHHHHHHH-hcC
Q psy16468 16 NDFVGTGESGKSTFIKQMRI-IHG 38 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmri-i~~ 38 (463)
+|+.|+.|+||||+++.+-- +++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999998654 443
No 431
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.61 E-value=0.42 Score=48.19 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
=++|.|+++|||||++.|+-.
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999753
No 432
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.49 E-value=0.49 Score=45.40 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+||.|++|+||||+++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999998764
No 433
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=84.43 E-value=0.59 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.5
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.+...|.+.|.+|+||||++..+-
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999988864
No 434
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=84.19 E-value=0.49 Score=45.72 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=42.5
Q ss_pred EEEecCCccc-------------cccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCe
Q psy16468 198 TMVDVGGQRS-------------ERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSM 264 (463)
Q Consensus 198 ~i~DvgGqr~-------------eR~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~ 264 (463)
.++|++|... .+..+..++.+++++++|+|.+.-+- . .. +.+.+.+.+-. .+.|
T Consensus 134 ~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~--~----~~---~~~~i~~~~~~----~~~~ 200 (315)
T 1jwy_B 134 TLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL--A----NS---DALQLAKEVDP----EGKR 200 (315)
T ss_dssp EEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS--T----TC---SHHHHHHHHCS----SCSS
T ss_pred EEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch--h----hh---HHHHHHHHhCC----CCCc
Confidence 8999999853 23456667889999999999753220 0 00 11223333321 3678
Q ss_pred eEecCCccccccccccccceeeecchhhhch
Q psy16468 265 VDVGGQRSERRKWIHCFENVTFCNSVQLFSQ 295 (463)
Q Consensus 265 il~~~~~~~~v~~~~~~~~~l~lNK~D~~~e 295 (463)
++ +++||+|+...
T Consensus 201 ~i------------------~v~NK~Dl~~~ 213 (315)
T 1jwy_B 201 TI------------------GVITKLDLMDK 213 (315)
T ss_dssp EE------------------EEEECTTSSCS
T ss_pred EE------------------EEEcCcccCCc
Confidence 99 99999998653
No 435
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.18 E-value=0.48 Score=51.18 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988764
No 436
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.16 E-value=0.45 Score=50.18 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|++||||||+++|+-
T Consensus 283 i~~i~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFV 302 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999975
No 437
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.15 E-value=0.58 Score=43.60 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.0
Q ss_pred eeEEEECCCCCChhHHHHHHHHhc
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
.-|.+-|..||||||+.+.+.--.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468899999999999999876443
No 438
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.00 E-value=0.53 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhHHHHHHHHh
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmrii 36 (463)
--++++|++||||||+++.+-..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 35889999999999998876543
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.99 E-value=0.5 Score=50.27 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999977653
No 440
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=83.85 E-value=0.51 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.6
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
...=|+|+|.+||||||+.+++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999999874
No 441
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=83.78 E-value=0.58 Score=47.92 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=23.2
Q ss_pred EEEecCCccccc-------cccccccCcccEEEEEEeccchh
Q psy16468 198 TMVDVGGQRSER-------RKWIHCFENVTSIIFLVALSEYD 232 (463)
Q Consensus 198 ~i~DvgGqr~eR-------~kW~~~f~~v~~iiFvv~ls~yd 232 (463)
.+||++|+...+ ..|..+++++++|++|+|.++-+
T Consensus 89 ~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 89 NVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp EEEECCC-----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred EEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 789999985432 37888889999999999998643
No 442
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.64 E-value=0.14 Score=48.42 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.4
Q ss_pred EEEECCCCCChhHHHHHHHHhc
Q psy16468 16 NDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmrii~ 37 (463)
+.|+|+.||||||+++.+--+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999876543
No 443
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=83.49 E-value=0.44 Score=53.95 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|+|+.||||||++||+-
T Consensus 675 i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHH
Confidence 47899999999999999974
No 444
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.48 E-value=0.52 Score=46.18 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
--++|.|++|+||||+++.+-
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 369999999999999998864
No 445
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.38 E-value=0.57 Score=47.17 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.4
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
..-.++++|+.||||||++|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHH
Confidence 34578999999999999998754
No 446
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.36 E-value=0.57 Score=49.76 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 447
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=83.29 E-value=0.67 Score=47.27 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=22.4
Q ss_pred EEEecCCccc-------cccccccccCcccEEEEEEeccch
Q psy16468 198 TMVDVGGQRS-------ERRKWIHCFENVTSIIFLVALSEY 231 (463)
Q Consensus 198 ~i~DvgGqr~-------eR~kW~~~f~~v~~iiFvv~ls~y 231 (463)
.+||++|+.. ...++..++.++++|++|+|.++-
T Consensus 74 ~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 74 KMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8899999732 124455677899999999999864
No 448
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.20 E-value=0.72 Score=46.62 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
..++|+|.+||||||+.|.+-
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 479999999999999998764
No 449
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.15 E-value=0.61 Score=44.46 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.3
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
...+||.|++|+||||+++.+-
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999864
No 450
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.13 E-value=0.7 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.2
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
....+||.|++|+||||+++.+-
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34469999999999999998653
No 451
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.13 E-value=0.61 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.0
Q ss_pred CcceeEEEECCCCCChhHHHHHHH
Q psy16468 11 ALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 11 ~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
...-.+||.|++|+||||+++.+-
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 344579999999999999998764
No 452
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.10 E-value=0.6 Score=46.02 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|.|++|+||||+++.+-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999865
No 453
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=83.06 E-value=0.37 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=19.6
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+..-|++-|..||||||+.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999998865
No 454
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=83.06 E-value=0.25 Score=48.88 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|++||||||+++.+-
T Consensus 175 ~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHhc
Confidence 68999999999999988763
No 455
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=83.03 E-value=0.67 Score=47.02 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCCcceeEEEECCCCCChhHHHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.....++|+++|..++||||++.++.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~ 32 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALT 32 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHH
Confidence 34567999999999999999998874
No 456
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=82.97 E-value=0.58 Score=50.56 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.3
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-+.|+|+.||||||++|.+-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 37899999999999987764
No 457
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.89 E-value=0.46 Score=50.76 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=17.5
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.++|+.||||||++|-+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTT
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 78999999999999987643
No 458
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.83 E-value=0.39 Score=51.33 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
..+.|+|.+||||||++|.+-
T Consensus 370 ~iI~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALA 390 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHH
Confidence 468999999999999999875
No 459
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.65 E-value=0.57 Score=46.93 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.4
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
++|.|+++|||||++.|+-
T Consensus 64 v~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999999974
No 460
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=82.64 E-value=0.86 Score=48.84 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=21.5
Q ss_pred CCcceeEEEECCCCCChhHHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.+....|+|.|.+||||||+.+.+.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La 417 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQ 417 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHH
Confidence 4556789999999999999999875
No 461
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=82.64 E-value=0.72 Score=46.76 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.6
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
..++|+++|..++||||++.++.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~ 24 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAIT 24 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHh
Confidence 46899999999999999998874
No 462
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=82.55 E-value=0.69 Score=45.94 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=20.9
Q ss_pred EEEecCCccccccccccccCcccEEEEEEeccchh
Q psy16468 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYD 232 (463)
Q Consensus 198 ~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~yd 232 (463)
.++|+.|....... ....++.++||+|.+..+
T Consensus 152 ~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~ 183 (341)
T 2p67_A 152 VIVETVGVGQSETE---VARMVDCFISLQIAGGGD 183 (341)
T ss_dssp EEEEEECCTTHHHH---HHTTCSEEEEEECC----
T ss_pred EEEeCCCccchHHH---HHHhCCEEEEEEeCCccH
Confidence 89999996533222 346899999999987654
No 463
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=82.51 E-value=0.84 Score=43.20 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=20.0
Q ss_pred CCCcceeEEEECCCCCChhHHHHH
Q psy16468 9 CPALEASNDFVGTGESGKSTFIKQ 32 (463)
Q Consensus 9 ~~~~~~kvLlLG~geSGKSTi~KQ 32 (463)
.+++.++|++.|.||+||||+.-.
T Consensus 2 ~~~g~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 2 NARGRLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp -CCCCEEEEEESSTTSSHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHH
Confidence 357789999999999999999544
No 464
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=82.48 E-value=0.47 Score=51.19 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||+++.+-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHh
Confidence 49999999999999988764
No 465
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.39 E-value=0.39 Score=45.24 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+||.|++|+||||+++.+-
T Consensus 46 ~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 38999999999999998764
No 466
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=82.37 E-value=0.5 Score=48.66 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=17.1
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
.+.|+|.++|||||+++.+
T Consensus 159 ~VgLVG~~gAGKSTLL~~L 177 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAM 177 (416)
T ss_dssp SEEEECCGGGCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999998875
No 467
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.30 E-value=0.66 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-|+|.|+.+|||||+.+.+.-.
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4789999999999999886543
No 468
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.27 E-value=0.65 Score=45.63 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.4
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
+|+.|++|+||||+++.+-
T Consensus 49 ~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999999764
No 469
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.19 E-value=0.68 Score=46.09 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmri 35 (463)
-++|.|+.+|||||+.+.+--
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988653
No 470
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=82.03 E-value=0.62 Score=45.73 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=19.0
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
.-.++|.|++|+||||+++.+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999998864
No 471
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=82.01 E-value=1.9 Score=45.90 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=52.4
Q ss_pred ccccccceeEEEEeeCCceeeeeccCCCccccccccccceeeEEEecCCccccccccccccCcccEEEEEEeccchhhhh
Q psy16468 156 VRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQIL 235 (463)
Q Consensus 156 ~r~~T~Gi~e~~f~~~~~~~~~~d~~~~~~~~~~~~~~f~~~~i~DvgGqr~eR~kW~~~f~~v~~iiFvv~ls~ydq~~ 235 (463)
.|.-|.--....|.+++..+ .++|+.|.-.-.--=.....-+++.|.|||..+-=
T Consensus 83 eRGITI~s~~~~~~~~~~~i----------------------NlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV--- 137 (548)
T 3vqt_A 83 ERGISVTTSVMQFPYRDRVV----------------------NLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV--- 137 (548)
T ss_dssp -----CTTTEEEEEETTEEE----------------------EEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS---
T ss_pred HCCCcEeeceEEEEECCEEE----------------------EEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCc---
Confidence 34444444557788888877 99999996332111112233589999999977532
Q ss_pred ccCCccchHHHHHHHHHHHhcCCCCCCCeeEecCCccccccccccccceeeecchhhh
Q psy16468 236 FESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLF 293 (463)
Q Consensus 236 ~e~~~~nr~~esl~lf~~i~~~~~~~~~~il~~~~~~~~v~~~~~~~~~l~lNK~D~~ 293 (463)
+..+..+|+..... +.|.+ +|+||+|..
T Consensus 138 --------~~qT~~v~~~a~~~----~lp~i------------------~fINK~Dr~ 165 (548)
T 3vqt_A 138 --------EAQTRKLMDVCRMR----ATPVM------------------TFVNKMDRE 165 (548)
T ss_dssp --------CHHHHHHHHHHHHT----TCCEE------------------EEEECTTSC
T ss_pred --------ccccHHHHHHHHHh----CCceE------------------EEEecccch
Confidence 33455666666543 58999 999999973
No 472
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=81.89 E-value=0.98 Score=44.82 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=21.5
Q ss_pred cceeEEEECCCCCChhHHHHHHHHhc
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMRIIH 37 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmrii~ 37 (463)
..-.+||.|++|+||||+.+.+--..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999876443
No 473
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=81.81 E-value=2 Score=39.95 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=22.3
Q ss_pred eEEEecCCccccccccc------cccCcccEEEEEEeccc
Q psy16468 197 VTMVDVGGQRSERRKWI------HCFENVTSIIFLVALSE 230 (463)
Q Consensus 197 ~~i~DvgGqr~eR~kW~------~~f~~v~~iiFvv~ls~ 230 (463)
+.++|++|+......+. ..+.+ ..||+++|.+.
T Consensus 111 ~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~ 149 (262)
T 1yrb_A 111 YVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEI 149 (262)
T ss_dssp EEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGG
T ss_pred EEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhh
Confidence 38999999855422111 24577 89999999753
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.70 E-value=0.8 Score=42.50 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.2
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
.=|.+.|..||||||+.+.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 457889999999999998865
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=81.65 E-value=0.63 Score=49.88 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
++.++|+.||||||++|-+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999987654
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.59 E-value=0.72 Score=45.37 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
-.+||.|++|+||||+++.+-
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 469999999999999999864
No 477
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=81.41 E-value=0.78 Score=43.97 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.3
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
.+++++|.+++||||++..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 699999999999999998865
No 478
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.31 E-value=0.76 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.2
Q ss_pred eeEEEECCCCCChhHHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMRI 35 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmri 35 (463)
..+||.|++|+||||+++.+--
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3699999999999999998743
No 479
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=81.30 E-value=0.93 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
-.+|+|+.||||||+++.+-.+..
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhhc
Confidence 368999999999999999887654
No 480
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=81.24 E-value=0.74 Score=41.54 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.3
Q ss_pred EEEECCCCCChhHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQm 33 (463)
+++.|+.+|||||++-|+
T Consensus 6 ~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSF 23 (184)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999998554
No 481
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.22 E-value=0.75 Score=44.99 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.2
Q ss_pred ceeEEEECCCCCChhHHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQmr 34 (463)
...+||.|++|+|||++++.+-
T Consensus 51 ~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3469999999999999999874
No 482
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=81.21 E-value=0.36 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.0
Q ss_pred eEEEECCCCCChhHHHHHHHHhcCC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHGS 39 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~~ 39 (463)
.+.|+|+.||||||+++-+..+.+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7899999999999999998877653
No 483
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.20 E-value=0.74 Score=45.18 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.8
Q ss_pred eEEEECCCCCChhHHHHHHHHhcC
Q psy16468 15 SNDFVGTGESGKSTFIKQMRIIHG 38 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii~~ 38 (463)
-.+|+|+.||||||+++-+..+-+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 478999999999999999887653
No 484
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.18 E-value=0.42 Score=41.02 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=17.9
Q ss_pred ceeEEEECCCCCChhHHHHHH
Q psy16468 13 EASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 13 ~~kvLlLG~geSGKSTi~KQm 33 (463)
...|||.|..|+|||++.+.+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGG
T ss_pred CCcEEEECCCCccHHHHHHHH
Confidence 346999999999999997764
No 485
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.99 E-value=0.74 Score=48.87 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.2
Q ss_pred eEEEECCCCCChhHHHHHHHHh
Q psy16468 15 SNDFVGTGESGKSTFIKQMRII 36 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmrii 36 (463)
-+||+|++|+||||++|.+--.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999987543
No 486
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=80.95 E-value=0.75 Score=46.90 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
+||.++|.+++||||++..+-
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~ 21 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAAT 21 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999998763
No 487
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.93 E-value=0.75 Score=52.38 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
.+.|+|+.||||||++|-+-
T Consensus 463 ~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999988764
No 488
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.89 E-value=0.82 Score=42.59 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=18.6
Q ss_pred cceeEEEECCCCCChhHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQm 33 (463)
....+||.|+++|||||+...+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3456999999999999998765
No 489
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.72 E-value=0.85 Score=44.17 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=18.6
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
.+.-+||.|++|+|||++++.+-
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34457777999999999999864
No 490
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.72 E-value=0.82 Score=44.51 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=17.5
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
+||.|++|+||||+++.+-
T Consensus 61 ~ll~G~~G~GKT~la~~la 79 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALT 79 (353)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999998764
No 491
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=80.28 E-value=0.87 Score=45.06 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=16.9
Q ss_pred EEEECCCCCChhHHHHHHH
Q psy16468 16 NDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 16 vLlLG~geSGKSTi~KQmr 34 (463)
.+++|+.||||||+++-+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999874
No 492
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=80.21 E-value=0.77 Score=43.21 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=16.2
Q ss_pred cceeEEEECCCCCChhHHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+..-|.+.|..||||||+.+.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999988765
No 493
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=80.12 E-value=0.86 Score=41.60 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=18.5
Q ss_pred cceeEEEECCCCCChhHHHHHH
Q psy16468 12 LEASNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 12 ~~~kvLlLG~geSGKSTi~KQm 33 (463)
...-+|+.|.+|+||||+.-.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHH
Confidence 3446999999999999997765
No 494
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=80.10 E-value=0.63 Score=50.54 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=16.2
Q ss_pred eEEEECCCCCChhHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQ 32 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQ 32 (463)
.+.|+|++||||||+++-
T Consensus 350 ~vaIiGpnGsGKSTLl~~ 367 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNE 367 (670)
T ss_dssp EEEEECSTTSSHHHHHTT
T ss_pred EEEEEeeCCCCHHHHHHH
Confidence 578999999999999874
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=80.09 E-value=1.1 Score=41.95 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=20.2
Q ss_pred CCcceeEEEECCCCCChhHHHHHHH
Q psy16468 10 PALEASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 10 ~~~~~kvLlLG~geSGKSTi~KQmr 34 (463)
+.+..-|.+-|..||||||+.+.+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3455678889999999999988865
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=80.05 E-value=1.9 Score=36.39 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=34.0
Q ss_pred EEEeeCCchhHHHHHHHHHHHHhcCCCCCCcEEEEecchhhhh
Q psy16468 398 YPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLLE 440 (463)
Q Consensus 398 ~~f~~~~~nr~~esl~lF~~i~n~~~f~~~~iilflNK~Dlf~ 440 (463)
..|+......+.+....+..+.......+.|++|++||.|+..
T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 73 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 4455555556788888888888877778899999999999965
No 497
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=80.03 E-value=0.89 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=17.7
Q ss_pred eeEEEECCCCCChhHHHHHHH
Q psy16468 14 ASNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 14 ~kvLlLG~geSGKSTi~KQmr 34 (463)
--++++|++||||||++..+=
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357888999999999987764
No 498
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=79.81 E-value=0.97 Score=41.94 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=16.7
Q ss_pred eEEEECCCCCChhHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQM 33 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQm 33 (463)
-+++.|+.||||||.+.++
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 4899999999999998864
No 499
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=79.76 E-value=0.94 Score=43.71 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhHHHHHHH
Q psy16468 15 SNDFVGTGESGKSTFIKQMR 34 (463)
Q Consensus 15 kvLlLG~geSGKSTi~KQmr 34 (463)
-++|.|+.|+||||+++++.
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHH
Confidence 58899999999999999974
No 500
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=79.70 E-value=1 Score=47.95 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=42.5
Q ss_pred eEEEecCCcccc-----------ccccccccCcccEEEEEEeccchhhhhccCCccchHHHHHHHHHHHhcCCCCCCCee
Q psy16468 197 VTMVDVGGQRSE-----------RRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMV 265 (463)
Q Consensus 197 ~~i~DvgGqr~e-----------R~kW~~~f~~v~~iiFvv~ls~ydq~~~e~~~~nr~~esl~lf~~i~~~~~~~~~~i 265 (463)
+.++|++|.... ...|..++.++++|+||+|.+..+ -..+....++.+.. .+.|+
T Consensus 156 l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~----------~~~~~~~~l~~l~~----~~~pv 221 (550)
T 2qpt_A 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE----------ISDEFSEAIGALRG----HEDKI 221 (550)
T ss_dssp CEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC----------CCHHHHHHHHHTTT----CGGGE
T ss_pred EEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC----------CCHHHHHHHHHHHh----cCCCE
Confidence 388999998641 133455677899999999986432 01122333333322 24688
Q ss_pred EecCCccccccccccccceeeecchhhhc
Q psy16468 266 DVGGQRSERRKWIHCFENVTFCNSVQLFS 294 (463)
Q Consensus 266 l~~~~~~~~v~~~~~~~~~l~lNK~D~~~ 294 (463)
+ +++||+|+..
T Consensus 222 i------------------lVlNK~Dl~~ 232 (550)
T 2qpt_A 222 R------------------VVLNKADMVE 232 (550)
T ss_dssp E------------------EEEECGGGSC
T ss_pred E------------------EEEECCCccC
Confidence 8 9999999864
Done!