RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16468
(463 letters)
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 262 bits (670), Expect = 1e-84
Identities = 198/311 (63%), Positives = 225/311 (72%), Gaps = 43/311 (13%)
Query: 19 VGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADP 78
+GTGESGKSTFIKQMRIIHGSGYSDEDKRGF KLVYQNIF AMQ+MIRAMD LKI Y
Sbjct: 13 LGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYE 72
Query: 79 TCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEI 138
+ A+L+R VD E V+ FE+PYV+AIK LW DPGIQECYDRRREYQL+DS KYYL ++
Sbjct: 73 HNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDL 132
Query: 139 DRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVT 198
DRVA P+YLPT+QD+LRVRVPTTGIIEYPFDL+ + FR
Sbjct: 133 DRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFR---------------------- 170
Query: 199 MVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP 258
MVDVGGQRSERRKWIHCFENVTSI+FLVALSEYDQ+L ES+NENRMEESKALF+TIITYP
Sbjct: 171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230
Query: 259 WFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRD 318
WFQ+S V + F N L + + + P + GPQRD
Sbjct: 231 WFQNSSV------------------ILFLNKKDLLEE---KIMYSHLVDYFPEYDGPQRD 269
Query: 319 AIAAREFILRM 329
A AAREFIL+M
Sbjct: 270 AQAAREFILKM 280
Score = 109 bits (273), Expect = 7e-27
Identities = 75/141 (53%), Positives = 82/141 (58%), Gaps = 46/141 (32%)
Query: 364 HSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGIN----------------- 406
YL DL R+ DP Y+PT+QD+LR R PTTGIIEYPFDL +
Sbjct: 126 KYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWI 185
Query: 407 -----------------------------RMEESKALFKTIITYPWFQHSSVILFLNKKD 437
RMEESKALF+TIITYPWFQ+SSVILFLNKKD
Sbjct: 186 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245
Query: 438 LLEEKIMYSHLVDYFPEYDDH 458
LLEEKIMYSHLVDYFPEYD
Sbjct: 246 LLEEKIMYSHLVDYFPEYDGP 266
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 254 bits (649), Expect = 4e-81
Identities = 113/246 (45%), Positives = 151/246 (61%), Gaps = 23/246 (9%)
Query: 19 VGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADP 78
+G GESGKST +KQM+IIH +GYS+E+ + + +VY N ++ ++IRAM LKI + D
Sbjct: 38 LGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDA 97
Query: 79 TCEEKAELIRSVDFETVTTFESP-YVEAIKELWADPGIQECYDRRREYQLTDSAKYYLME 137
+ A + + F + IK LW D G+Q C++R REYQL DSA YYL +
Sbjct: 98 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLND 157
Query: 138 IDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
+DR+A PNY+PT+QD+LR RV TTGI+E F +++ F+
Sbjct: 158 LDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFK--------------------- 196
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
M DVGGQRSER+KWIHCFE VT+IIF VALS+YD +L E E NRM ES LF +I
Sbjct: 197 -MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255
Query: 258 PWFQHS 263
WF +
Sbjct: 256 KWFTDT 261
Score = 105 bits (262), Expect = 4e-25
Identities = 49/157 (31%), Positives = 64/157 (40%), Gaps = 47/157 (29%)
Query: 349 QSGLGENHLLALHVRHSYLGD-LARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGIN- 406
Q+ + L+ +Y + L RI P Y+PT+QD+LR R TTGI+E F ++
Sbjct: 136 QACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHF 195
Query: 407 ---------------------------------------------RMEESKALFKTIITY 421
RM ES LF +I
Sbjct: 196 KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255
Query: 422 PWFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEYDDH 458
WF +S+ILFLNKKDL EEKI S L +PEY
Sbjct: 256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292
Score = 47.0 bits (111), Expect = 7e-06
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 253 TIITYPWFQHSMVDVGGQRSERRKWIHCFENVT---FCNSVQLFSQY 296
T T+ M DVGGQRSER+KWIHCFE VT FC ++ +
Sbjct: 186 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 232
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 254 bits (649), Expect = 6e-81
Identities = 100/254 (39%), Positives = 145/254 (57%), Gaps = 30/254 (11%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
+G GESGKSTF+KQMRIIHG + + F +Y N+ M+ ++ A + L I + D
Sbjct: 38 LLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGD 97
Query: 78 PTCEEKAELIRSVDFETV--------TTFESPYVEAIKELWADPGIQECYDRRREYQLTD 129
+ + + + D T Y+ AI+ LW D GIQ YDRRRE+QL +
Sbjct: 98 NKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGE 157
Query: 130 SAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRK 189
S KY+L +D++ P+Y+P++QDIL R PT GI EY F+++ + F+
Sbjct: 158 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFK------------- 204
Query: 190 WIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKA 249
MVDVGGQRSER++W CF++VTSI+FLV+ SE+DQ+L E NR+ ES
Sbjct: 205 ---------MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255
Query: 250 LFKTIITYPWFQHS 263
+F+TI+ F +
Sbjct: 256 IFETIVNNRVFSNV 269
Score = 111 bits (279), Expect = 2e-27
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 46/141 (32%)
Query: 364 HSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGI------------------ 405
+L +L ++ P Y+P++QDIL AR+PT GI EY F++ +
Sbjct: 160 KYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWF 219
Query: 406 ----------------------------NRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
NR+ ES +F+TI+ F + S+ILFLNK D
Sbjct: 220 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279
Query: 438 LLEEKIMYSHLVDYFPEYDDH 458
LLEEK+ + DYF E++
Sbjct: 280 LLEEKVQVVSIKDYFLEFEGD 300
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 246 bits (629), Expect = 4e-78
Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 24/253 (9%)
Query: 19 VGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADP 78
+G GESGKST KQ++++ +G+ + + + ++ +++ N++ ++ + D
Sbjct: 15 LGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDS 74
Query: 79 TCEEKAELIRSVD--------FETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDS 130
+ ++ E I+ LW DP IQE R E Q+ D
Sbjct: 75 AKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDC 134
Query: 131 AKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKW 190
KY + + R++ NY+PT++D+L RV TTG++E F
Sbjct: 135 TKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGE----------------N 178
Query: 191 IHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKAL 250
E + DVGGQR+ERRKWIH FE VT++IF A+SEYDQ LFE E +NRM E+K L
Sbjct: 179 KKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKEL 238
Query: 251 FKTIITYPWFQHS 263
F ++ P F+ +
Sbjct: 239 FDWVLKQPCFEKT 251
Score = 110 bits (276), Expect = 5e-27
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 54/145 (37%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLD---------------------- 403
+ +L R+ D Y+PT++D+L AR TTG++E F
Sbjct: 138 LMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNER 197
Query: 404 ------------------------------GINRMEESKALFKTIITYPWFQHSSVILFL 433
NRM E+K LF ++ P F+ +S +LFL
Sbjct: 198 RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 257
Query: 434 NKKDLLEEKIMYSHL--VDYFPEYD 456
NK D+ E+K++ L ++F +Y
Sbjct: 258 NKFDIFEKKVLDVPLNVCEWFRDYQ 282
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 243 bits (622), Expect = 2e-76
Identities = 94/263 (35%), Positives = 144/263 (54%), Gaps = 39/263 (14%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDE---------------DKRGFIKLVYQNIFMAMQ 62
+G GESGKST +KQMRI+H +G++ E +K ++ + N+ A++
Sbjct: 45 LLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIE 104
Query: 63 SMIRAMDLLKI--QYADPTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYD 120
+++ AM L + A+P + + + I SV F + E K LW D G++ CY+
Sbjct: 105 TIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYE 164
Query: 121 RRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDV 180
R EYQL D A+Y+L +ID + +Y+P++QD+LR RV T+GI E F ++++ F
Sbjct: 165 RSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFH---- 220
Query: 181 GGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESEN 240
M DVGGQR ERRKWI CF +VT+IIF+VA S Y+ ++ E
Sbjct: 221 ------------------MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQ 262
Query: 241 ENRMEESKALFKTIITYPWFQHS 263
NR++E+ LFK+I W +
Sbjct: 263 TNRLQEALNLFKSIWNNRWLRTI 285
Score = 109 bits (273), Expect = 2e-26
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 48/142 (33%)
Query: 364 HSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPFDLDGI------------------ 405
+L + I+ Y+P++QD+LR R T+GI E F +D +
Sbjct: 176 QYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWI 235
Query: 406 ----------------------------NRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
NR++E+ LFK+I W + SVILFLNK+D
Sbjct: 236 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295
Query: 438 LLEEKIMY--SHLVDYFPEYDD 457
LL EK++ S + DYFPE+
Sbjct: 296 LLAEKVLAGKSKIEDYFPEFAR 317
Score = 44.4 bits (104), Expect = 6e-05
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 253 TIITYPWFQHSMVDVGGQRSERRKWIHCFENVTFCNSVQLFSQYNVIL 300
T M DVGGQR ERRKWI CF +VT V S YN+++
Sbjct: 210 TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 7e-07
Identities = 65/478 (13%), Positives = 133/478 (27%), Gaps = 170/478 (35%)
Query: 97 TFESPYVEAIKELWAD--PGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDIL 154
F E + AD P +L K+ L + + P+ + +L
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPA--------ELV--GKF-LGYVSSLVEPSKVGQFDQVL 84
Query: 155 RVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIH 214
+ + F E + + G IH + + + ++ I
Sbjct: 85 NL------CLTE-F---ENCY----LEGND------IHALAAKLLQENDTTLVKTKELIK 124
Query: 215 CFENVTSIIFLVALSEYDQILFES----------------ENENRMEESKALFKTIITYP 258
+ + + + LF + ++ EE + L++ TY
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ---TYH 181
Query: 259 WFQHSMVDVGGQRSER------------------RKWIHCFE---NVTFCNS-------- 289
++ + +W+ + + S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 290 --VQLFSQYNVILNCMNYT---IVPPLH--TGPQRDAIAAREFILRMTSTGRD-----RS 337
+QL + Y V + +T + L TG + + A + T + R
Sbjct: 242 GVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV--AIAETDSWESFFVSVRK 298
Query: 338 A---------RVHSANVRRPQSGL-----------GEN---HLLALHVRHSYLGDL-ARI 373
A R + A P + L E +L+ + + + +
Sbjct: 299 AITVLFFIGVRCYEA---YPNTSLPPSILEDSLENNEGVPSPMLS--ISNLTQEQVQDYV 353
Query: 374 ED-PGYMPTEQDI---LR--ARQPT-TGIIEYPFDLDGINR----------MEESKALF- 415
++P + + L A+ +G P L G+N +++S+ F
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSG---PPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 416 --KTI-------ITYPWFQHSSVILFLN------KKDLLEEKIMY--SHLVDYFPEYD 456
K + P F HS L KDL++ + + + P YD
Sbjct: 411 ERKLKFSNRFLPVASP-F-HSH---LLVPASDLINKDLVKNNVSFNAKDIQ--IPVYD 461
Score = 34.3 bits (78), Expect = 0.12
Identities = 30/174 (17%), Positives = 51/174 (29%), Gaps = 54/174 (31%)
Query: 35 IIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRSVDFE- 93
IH G ++G + I +MI + + +E E S F
Sbjct: 1673 TIHFGG-----EKG------KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 94 -----TVTTFESP---YVE-AIKELWADPGIQECYDRRR--------EYQLTDSAKYYLM 136
+ T F P +E A E G+ EY +A L
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLI---PADATFAGHSLGEY----AA---L- 1770
Query: 137 EIDRVAAPNYLPTEQ--DILRVRVPTTGII---EYPFD-LEEIRFRMVDVGGQR 184
+ + + E +++ R G+ P D L + M+ + R
Sbjct: 1771 ----ASLADVMSIESLVEVVFYR----GMTMQVAVPRDELGRSNYGMIAINPGR 1816
Score = 32.3 bits (73), Expect = 0.43
Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 70/201 (34%)
Query: 318 DAIAAREFILRMTSTGRDR-----SARVHS-ANVRR---------PQSGLGEN------- 355
DA + R L S G A+ + P G +
Sbjct: 2 DAYSTRPLTL---SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 356 HLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEYPF----D-------LDG 404
L+ +LG ++ + +P + +L E + D L
Sbjct: 59 ELVG-----KFLGYVSSLVEPSKVGQFDQVLNL---CLTEFENCYLEGNDIHALAAKLLQ 110
Query: 405 INRMEESKALFKTII-TY---------PWFQHSSVILFLNKKDLLEEKIMYS------HL 448
N K K +I Y P+ + S+ LF + + + +
Sbjct: 111 ENDTTLVKT--KELIKNYITARIMAKRPFDKKSNSALFRAVGE--GNAQLVAIFGGQGNT 166
Query: 449 VDYFPE----YDD--HIIIEL 463
DYF E Y ++ +L
Sbjct: 167 DDYFEELRDLYQTYHVLVGDL 187
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 46.0 bits (110), Expect = 5e-06
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
T D+GG RR W F V I+FLV D + + R +E++ +
Sbjct: 70 TTFDLGGHIQARRLWKDYFPEVNGIVFLV-----D-----AADPERFDEARVELDALFNI 119
Query: 258 P 258
Sbjct: 120 A 120
Score = 32.2 bits (74), Expect = 0.22
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 266 DVGGQRSERRKWIHCFENV 284
D+GG RR W F V
Sbjct: 73 DLGGHIQARRLWKDYFPEV 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 8e-06
Identities = 37/255 (14%), Positives = 77/255 (30%), Gaps = 72/255 (28%)
Query: 230 EYDQILFESENENRMEESKALFKTIIT-----------------YPWFQHSMVDVGGQRS 272
E D I+ + + + LF T+++ Y + + Q S
Sbjct: 50 EIDHIIMSKDAVSG---TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 273 -ERRKWIHCFENVTFCNSVQLFSQYNVILNCMNYTIVPP---LHTGPQRDAIAAREFILR 328
R +I + + N Q+F++YNV + + P L A I
Sbjct: 107 MMTRMYIEQRDRL--YNDNQVFAKYNV-------SRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 329 MTSTGRD-------RSARVHS-----------ANVRRPQSGLGENHLLALHVRHSYLGDL 370
+ +G+ S +V N P++ L L + ++
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SR 216
Query: 371 ARIEDPGYMPTEQ------DILRARQ-PTTGIIEYPFDLDGINRMEESKALF----KTII 419
+ + +L+++ ++ L + + A F K ++
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAWNA-FNLSCKILL 270
Query: 420 TYPWFQHSSVILFLN 434
T + V FL+
Sbjct: 271 TT---RFKQVTDFLS 282
Score = 39.8 bits (92), Expect = 0.002
Identities = 75/561 (13%), Positives = 158/561 (28%), Gaps = 183/561 (32%)
Query: 29 FIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKI--QYADPTCEEKAEL 86
F+ D K K +I M+ ++ + L + ++ E
Sbjct: 29 FVDNFDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 87 IRSVDFETVTT-----FESP------YVEAIKELWADPGIQECYDRRREYQLTDSAKYYL 135
+ ++++ + + P Y+E L+ D + Y+ R Q + L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-QPYLKLRQAL 144
Query: 136 MEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQ-------RSERR 188
+E LR P ++ ++ G S +
Sbjct: 145 LE----------------LR---PAKNVLIDG---------VLGSGKTWVALDVCLSYKV 176
Query: 189 KWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK 248
+ F + +++ S E + +++ + + + S + R+ +
Sbjct: 177 QCKMDF-KIFWLNLKNCNSPET----VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 249 ALFKTIITYPWFQHSMV---DV----------------------------GGQRSERRKW 277
A + ++ +++ ++ +V +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 278 IHCFENVTFCNSVQLFSQYNVILNCMNYTIVPP--LHTGPQRDA-IAA--REFILRMTST 332
H +T L +Y L+C + P L T P+R + IA R+ +
Sbjct: 292 DHHSMTLTPDEVKSLLLKY---LDCRPQDL-PREVLTTNPRRLSIIAESIRDGLAT---- 343
Query: 333 GRDRSARVHSANVRRP-QSGLGENHLLALHVRHSYLGDLARI--ED---P--------GY 378
D V+ + +S L N L R + L+ + P
Sbjct: 344 -WDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFD-RLS-VFPPSAHIPTILLSLIWFD 398
Query: 379 MPTE--QDI--------LRARQPTTGIIEYP-FDLDGINRMEESKALFKTIIT------- 420
+ + L +QP I P L+ ++E AL ++I+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 421 -------------YPWFQ----HSSVI-----------LFLNKKDL--LEEKIMYS---- 446
Y ++ H I +FL D LE+KI +
Sbjct: 459 FDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFL---DFRFLEQKIRHDSTAW 514
Query: 447 -------HLVDYFPEYDDHII 460
+ + Y +I
Sbjct: 515 NASGSILNTLQQLKFYKPYIC 535
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 45.3 bits (108), Expect = 1e-05
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
T D+GG RR W + + I+FLV D + R+ ESK +++T
Sbjct: 72 TTFDLGGHIQARRVWKNYLPAINGIVFLV-----D-----CADHERLLESKEELDSLMTD 121
Query: 258 P 258
Sbjct: 122 E 122
Score = 31.1 bits (71), Expect = 0.46
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 266 DVGGQRSERRKWIHCFENV 284
D+GG RR W + +
Sbjct: 75 DLGGHIQARRVWKNYLPAI 93
Score = 28.0 bits (63), Expect = 5.8
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
R GI+ + D R+ ESK +++T + +++ NK D
Sbjct: 79 HIQARRVWKNYLPAINGIV-FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 137
Query: 438 L 438
Sbjct: 138 R 138
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 41.5 bits (98), Expect = 2e-04
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
T+ D+ GQ R W H ++ +IIF++ D S + RM +K T++ +
Sbjct: 70 TVFDMSGQGRYRNLWEHYYKEGQAIIFVI-----D-----SSDRLRMVVAKEELDTLLNH 119
Query: 258 P 258
P
Sbjct: 120 P 120
Score = 28.0 bits (63), Expect = 5.4
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 255 ITYPWFQHSMVDVGGQRSERRKWIHCFENV 284
++ D+ GQ R W H ++
Sbjct: 62 FKSSSLSFTVFDMSGQGRYRNLWEHYYKEG 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 41.1 bits (97), Expect = 2e-04
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
M D+GGQ S R W + N +I +V D S + R+ ++ ++
Sbjct: 68 LMWDIGGQESLRSSWNTYYTNTEFVIVVV-----D-----STDRERISVTREELYKML 115
Score = 30.7 bits (70), Expect = 0.64
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
Q+ LR+ T +I D R+ ++ ++ + + + +++F NK+D
Sbjct: 75 QESLRSSWNTYYTNTEFVI-VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
Query: 438 L 438
+
Sbjct: 134 V 134
Score = 27.6 bits (62), Expect = 6.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 255 ITYPWFQHSMVDVGGQRSERRKWIHCFEN 283
I + M D+GGQ S R W + N
Sbjct: 60 IVINNTRFLMWDIGGQESLRSSWNTYYTN 88
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 41.0 bits (97), Expect = 3e-04
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 196 NVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
+ + D+GGQR R W FEN +I+++ D S + R EE+ ++
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVI-----D-----SADRKRFEETGQELTELL 110
Score = 29.1 bits (66), Expect = 2.3
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGIN--RMEESKALFKTIITYPWFQHSSVILFLNK 435
Q +R + T +I + +D + R EE+ ++ V++F NK
Sbjct: 70 QRKIRPYWRSYFENTDILI---YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126
Query: 436 KDL 438
+DL
Sbjct: 127 QDL 129
Score = 27.6 bits (62), Expect = 6.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 255 ITYPWFQHSMVDVGGQRSERRKWIHCFENV 284
+ F+ ++ D+GGQR R W FEN
Sbjct: 55 VQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 40.7 bits (96), Expect = 3e-04
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 196 NVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
+ + DVGGQ+S R W + FE+ +I++V +S + RM++ + ++++
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLL 112
Score = 30.7 bits (70), Expect = 0.71
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
Q LR+ + T G+I + D RM++ + ++++ +++++F NK+D
Sbjct: 72 QKSLRSYWRNYFESTDGLI-WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 438 L 438
L
Sbjct: 131 L 131
Score = 27.6 bits (62), Expect = 6.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 255 ITYPWFQHSMVDVGGQRSERRKWIHCFENV 284
+ + F+ ++ DVGGQ+S R W + FE+
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 40.7 bits (96), Expect = 3e-04
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
+ D+GGQ S R W + + ++IF+V +S +++RM + ++
Sbjct: 65 NVWDLGGQTSIRPYWRCYYADTAAVIFVV----------DSTDKDRMSTASKELHLMLQE 114
Query: 258 P 258
Sbjct: 115 E 115
Score = 34.5 bits (80), Expect = 0.037
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
PT G + ++ + D+GGQ S R W + +
Sbjct: 47 KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADT 86
Score = 29.1 bits (66), Expect = 2.3
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
Q +R T +I + D +RM + ++ Q +++++F NK+D
Sbjct: 72 QTSIRPYWRCYYADTAAVI-FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 438 L 438
Sbjct: 131 Q 131
Score = 28.0 bits (63), Expect = 5.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 255 ITYPWFQHSMVDVGGQRSERRKWIHCFENV 284
++Y + ++ D+GGQ S R W + +
Sbjct: 57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADT 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 40.6 bits (96), Expect = 4e-04
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 194 FENVTMV--DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALF 251
NVT+ D+GGQ R W V++I+++V D + ++ ++E SK
Sbjct: 64 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV-----D-----AADQEKIEASKNEL 113
Query: 252 KTIITYP 258
++ P
Sbjct: 114 HNLLDKP 120
Score = 32.2 bits (74), Expect = 0.19
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 158 VPTTGIIEYPFDLEEI-----RFRMVDVGGQRSERRKWIHCFENV 197
+PT G F++ +I ++ D+GGQ R W V
Sbjct: 52 IPTVG-----FNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGV 91
Score = 28.7 bits (65), Expect = 2.6
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
Q R+ + + I+ Y D ++E SK ++ P Q V++ NK+D
Sbjct: 77 QPRFRSMWERYCRGVSAIV-YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 438 L 438
L
Sbjct: 136 L 136
Score = 27.5 bits (62), Expect = 7.9
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 266 DVGGQRSERRKWIHCFENV 284
D+GGQ R W V
Sbjct: 73 DIGGQPRFRSMWERYCRGV 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 40.3 bits (95), Expect = 4e-04
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
M D+GGQ S R W + N +I +V D S + R+ ++ ++
Sbjct: 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVV-----D-----STDRERISVTREELYKML 110
Score = 30.7 bits (70), Expect = 0.72
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
Q+ LR+ T +I D R+ ++ ++ + + + +++F NK+D
Sbjct: 70 QESLRSSWNTYYTNTEFVI-VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 438 L 438
+
Sbjct: 129 V 129
Score = 27.6 bits (62), Expect = 7.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 255 ITYPWFQHSMVDVGGQRSERRKWIHCFENV 284
I + M D+GGQ S R W + N
Sbjct: 55 IVINNTRFLMWDIGGQESLRSSWNTYYTNT 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 40.2 bits (95), Expect = 4e-04
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
+ D+GG S R W + N ++I++V D S + +R+ SK+ ++
Sbjct: 54 QVWDLGGLTSIRPYWRCYYSNTDAVIYVV-----D-----SCDRDRIGISKSELVAMLEE 103
Query: 258 P 258
Sbjct: 104 E 104
Score = 32.9 bits (76), Expect = 0.097
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 158 VPTTGIIEYPFDLEE-----IRFRMVDVGGQRSERRKWIHCFENV 197
+PT G F++E ++F++ D+GG S R W + N
Sbjct: 36 IPTIG-----FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNT 75
Score = 30.2 bits (69), Expect = 0.94
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 383 QDILRA-----RQPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
+R T +I Y D +R+ SK+ ++ + + +++F NK+D
Sbjct: 61 LTSIRPYWRCYYSNTDAVI-YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 119
Query: 438 L 438
+
Sbjct: 120 M 120
Score = 27.5 bits (62), Expect = 5.7
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 266 DVGGQRSERRKWIHCFENV 284
D+GG S R W + N
Sbjct: 57 DLGGLTSIRPYWRCYYSNT 75
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 39.9 bits (94), Expect = 5e-04
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
+ D+GGQ R W F + ++I++V D S + +RM +K ++
Sbjct: 69 EVWDLGGQTGVRPYWRCYFSDTDAVIYVV-----D-----STDRDRMGVAKHELYALLDE 118
Query: 258 P 258
Sbjct: 119 D 119
Score = 34.1 bits (79), Expect = 0.053
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 158 VPTTGIIEYPFDLEE-----IRFRMVDVGGQRSERRKWIHCFENV 197
VPT G +LE I F + D+GGQ R W F +
Sbjct: 51 VPTVG-----VNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDT 90
Score = 29.1 bits (66), Expect = 2.2
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
Q +R T +I Y D +RM +K ++ + S +++F NK+D
Sbjct: 76 QTGVRPYWRCYFSDTDAVI-YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 438 L 438
L
Sbjct: 135 L 135
Score = 28.0 bits (63), Expect = 5.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 266 DVGGQRSERRKWIHCFENV 284
D+GGQ R W F +
Sbjct: 72 DLGGQTGVRPYWRCYFSDT 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 39.1 bits (92), Expect = 9e-04
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
T+ DVGGQ R W H F+N +IF+V D S + R+ E++ ++
Sbjct: 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----D-----SNDRERVNEAREELMRML 94
Score = 32.5 bits (75), Expect = 0.14
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENV 197
+PT G + + I F + DVGGQ R W H F+N
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 68
Score = 29.8 bits (68), Expect = 1.2
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
QD +R Q T G+I + D + R+ E++ ++ + + +++F NK+D
Sbjct: 54 QDKIRPLWRHYFQNTQGLI-FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 438 L 438
L
Sbjct: 113 L 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 39.9 bits (93), Expect = 0.001
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITY 257
+ DVGGQ R W H + +IF+V + + +R++E++ II
Sbjct: 369 NVWDVGGQDKIRPLWRHYYTGTQGLIFVV----------DCADRDRIDEARQELHRIIND 418
Query: 258 P 258
Sbjct: 419 R 419
Score = 34.1 bits (78), Expect = 0.10
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 158 VPTTGIIEYPFDLEE-----IRFRMVDVGGQRSERRKWIHCFEN 196
+PT G F++E ++F + DVGGQ R W H +
Sbjct: 351 IPTVG-----FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTG 389
Score = 29.9 bits (67), Expect = 2.0
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
QD +R T G+I + D +R++E++ II + + +++F NK+D
Sbjct: 376 QDKIRPLWRHYYTGTQGLI-FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 434
Query: 438 L 438
L
Sbjct: 435 L 435
Score = 27.9 bits (62), Expect = 8.1
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 266 DVGGQRSERRKWIHCFEN 283
DVGGQ R W H +
Sbjct: 372 DVGGQDKIRPLWRHYYTG 389
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 39.5 bits (92), Expect = 0.002
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
T+ DVGGQ R W H F+N +IF+V +S + R+ E++ ++
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRERVNEAREELMRML 259
Score = 33.3 bits (76), Expect = 0.15
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 158 VPTTGIIEYPFDLEE-----IRFRMVDVGGQRSERRKWIHCFEN 196
+PT G F++E I F + DVGGQ R W H F+N
Sbjct: 194 IPTIG-----FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 232
Score = 29.9 bits (67), Expect = 2.0
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
QD +R Q T G+I + D + R+ E++ ++ + + +++F NK+D
Sbjct: 219 QDKIRPLWRHYFQNTQGLI-FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 438 L 438
L
Sbjct: 278 L 278
Score = 27.5 bits (61), Expect = 9.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 266 DVGGQRSERRKWIHCFEN 283
DVGGQ R W H F+N
Sbjct: 215 DVGGQDKIRPLWRHYFQN 232
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 37.3 bits (87), Expect = 0.005
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 198 TMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTII 255
T+ DVGGQ R W H F+N +IF+V D S + R++ES + ++
Sbjct: 76 TVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----D-----SNDRERVQESADELQKML 123
Score = 32.3 bits (74), Expect = 0.21
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFEN 196
+PT G + + I F + DVGGQ R W H F+N
Sbjct: 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN 96
Score = 29.2 bits (66), Expect = 2.1
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 383 QDILRAR-----QPTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKD 437
QD +R Q T G+I + D + R++ES + ++ + + +++F NK+D
Sbjct: 83 QDKIRPLWRHYFQNTQGLI-FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 438 L 438
+
Sbjct: 142 M 142
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 37.0 bits (86), Expect = 0.006
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 196 NVTMVDVGGQRSERRKWIHCFENVTS----IIFLVALSEYDQILFESENENRMEESKALF 251
VT+VD G R K + +IF+V S D ++ +
Sbjct: 56 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD-STVDP--------KKLTTTAEFL 106
Query: 252 KTIITYP 258
I++
Sbjct: 107 VDILSIT 113
Score = 34.7 bits (80), Expect = 0.042
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 9/52 (17%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVT--------MVD 201
V + + D + +VD G R K + MVD
Sbjct: 41 VVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 91
Score = 28.6 bits (64), Expect = 3.2
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 264 MVDVGGQRSERRKWIHCFENVT 285
+VD G R K +
Sbjct: 59 LVDFPGHVKLRYKLSDYLKTRA 80
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 36.6 bits (84), Expect = 0.009
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 10/68 (14%)
Query: 183 QRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENEN 242
+ + + N G + S + E V I++ +E
Sbjct: 90 EHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVA----------NAEAHK 139
Query: 243 RMEESKAL 250
R E
Sbjct: 140 RHEWQDEF 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 35.5 bits (82), Expect = 0.016
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 28/101 (27%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFE 217
V + + D + +VD G R K + G
Sbjct: 77 VVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG-------------- 121
Query: 218 NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYP 258
+IF+V S D ++ + I++
Sbjct: 122 ----LIFMVD-STVDP--------KKLTTTAEFLVDILSIT 149
Score = 28.5 bits (64), Expect = 3.1
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 264 MVDVGGQRSERRKWIHCFENVTFC 287
+VD G R K +
Sbjct: 95 LVDFPGHVKLRYKLSDYLKTRAKF 118
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 34.7 bits (80), Expect = 0.037
Identities = 7/32 (21%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 196 NVTMVDVGGQRSERRK-WIHCFENVTSIIFLV 226
++T++D+ G S R + + +++F+V
Sbjct: 55 SLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 86
Score = 30.9 bits (70), Expect = 0.57
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 10/53 (18%)
Query: 158 VPTTG----IIEYPFDLEEIRFRMVDVGGQRSERRK-WIHCFEN----VTMVD 201
+ I + + ++D+ G S R + + V +VD
Sbjct: 36 QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 87
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 33.9 bits (77), Expect = 0.084
Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 38/184 (20%)
Query: 95 VTTFESPYVEAIKELWADPGIQECYDRRREY-----QLTDSAKYYL------MEIDRVAA 143
V P +E +K+ ++ +D Y L + +E +
Sbjct: 59 VDWKSLPDLEILKKPISEVTDGAFFDYMAVYRMCCPYLIIQNEPRFAMFGPGLEELNTSL 118
Query: 144 PNYLPTEQDILRVR-VPTTGI--IEYPFDLE---EIRFRMVDV-GGQRSERRKW------ 190
L + +++ +P I I + + + +F ++ + R ER +
Sbjct: 119 VLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 178
Query: 191 ----IHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEE 246
+ N G + S + E V I++ +E R E
Sbjct: 179 AVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVA----------NAEAHKRHEW 228
Query: 247 SKAL 250
Sbjct: 229 QDEF 232
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 31.3 bits (71), Expect = 0.39
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 196 NVTMVDVGGQRSERRKWIHCFENVTSIIFLV 226
+ V GQ V I+F+
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVA 105
Score = 28.9 bits (65), Expect = 2.7
Identities = 15/98 (15%), Positives = 22/98 (22%), Gaps = 11/98 (11%)
Query: 135 LMEIDRVAAPNYLPTEQDILRVRVPTTGIIEYPFDLEE-----IRFRMVDVGGQRSERRK 189
L I + T P D+ E RF + V GQ
Sbjct: 31 LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90
Query: 190 WIHCFEN----VTMVDVGGQRSERRKWIHCFENVTSII 223
V + D + R N+ +
Sbjct: 91 RKLILRGVDGIVFVADS--APNRLRANAESMRNMRENL 126
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 30.4 bits (68), Expect = 1.2
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 391 PTTGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKK--DLLEEKIMYSHL 448
++ P D + + +E + + ++I S++L N K EE+ +
Sbjct: 143 NFGLLLTLPRDAEALKVLENATSRIRSIAMNQE-AFGSIVLIDNAKLYRKFEEENPSALA 201
Query: 449 VDYFPEYDDHI 459
+Y + +I
Sbjct: 202 NEYTSYSNKYI 212
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 30.0 bits (68), Expect = 2.2
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 22 GE--SGKSTFIKQM-RIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADP 78
GE +GK+T IK + + D K + + Q I +R + KI+
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLN-VSMKPQKIAPKFPGTVRQLFFKKIRGQFL 443
Query: 79 TCEEKAELIRSVD 91
+ + ++++ +
Sbjct: 444 NPQFQTDVVKPLR 456
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 28.9 bits (64), Expect = 4.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 15 SNDFVGTGESGKSTFIKQMRIIHG 38
+ F+GT S S I + R I G
Sbjct: 357 ARFFIGTSVSTFSFRIHEEREILG 380
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 28.6 bits (63), Expect = 4.6
Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 24/150 (16%)
Query: 308 VPPLHTGPQRDAIAAREFILRMTS-TGRDRSARVHSANVRRPQSGLGE------NHLLAL 360
VP GP+ F+ M T + +P L N +
Sbjct: 90 VPGSRVGPE---PTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCA 146
Query: 361 HVRHSYLGDLARIEDPGYMPTEQDILRARQPTTGIIEY----------PFDLDGINRMEE 410
+ + L ++ I+ PG + + + ++ + FD + +E
Sbjct: 147 QLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDE 206
Query: 411 SKALFKTIITYPWFQHSSVILFLNKKDLLE 440
+ + + + LNK D++E
Sbjct: 207 FSEAIGALRGH----EDKIRVVLNKADMVE 232
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
glycosyltransferase, GT-B, catalytic mechanism,; HET:
GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
3zy5_A* 3zy6_A*
Length = 362
Score = 28.2 bits (62), Expect = 6.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 15 SNDFVGTGESGKSTFIKQMRIIHG 38
++ FVG S S +K+ R G
Sbjct: 325 ADLFVGNCVSTFSHIVKRERDHAG 348
>3boq_A Transcriptional regulator, MARR family; MARR famil structural
genomics, PSI-2, protein structure initiative; 2.39A
{Silicibacter pomeroyi dss-3}
Length = 160
Score = 27.7 bits (62), Expect = 6.0
Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 322 AREFILRMTSTGR---DRSARVHSANVRRPQSGLGENHLLALH 361
R F ++T G +++ H+ + + + ++
Sbjct: 101 RRSFSAKLTDAGLTTFKQASEAHNRILAELLRAVSDQDMVEAS 143
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 27.4 bits (61), Expect = 8.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 116 QECYDRRREYQLTDSAKYYLMEIDR 140
+EC R R Q D +Y++ +D+
Sbjct: 129 EECRARIRYAQEHDITNFYMLTLDK 153
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 27.7 bits (62), Expect = 9.1
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 429 VILFLNKKDLLEEKIMYSHLVDYFPEYDDHIII 461
++ +NK D+L EK L + + ++
Sbjct: 143 FVVVVNKIDVLGEKA--EELKGLYESRYEAKVL 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,408,525
Number of extensions: 456274
Number of successful extensions: 1046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1027
Number of HSP's successfully gapped: 102
Length of query: 463
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 366
Effective length of database: 3,993,456
Effective search space: 1461604896
Effective search space used: 1461604896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)