RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16468
(463 letters)
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 155 bits (394), Expect = 8e-47
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 41 YSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRSVDFETVTTFES 100
YSDEDKRGF KLVYQNIF AMQ+MIRAMD LKI Y + A+L+R VD E V+ FE+
Sbjct: 1 YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFEN 60
Query: 101 PYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVR 157
PYV+AIK LW DPGIQECYDRRREYQL+DS KYYL ++DRVA P+YLPT+QD+LRVR
Sbjct: 61 PYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVR 117
Score = 41.4 bits (97), Expect = 2e-05
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 364 HSYLGDLARIEDPGYMPTEQDILRAR 389
YL DL R+ DP Y+PT+QD+LR R
Sbjct: 92 KYYLNDLDRVADPSYLPTQQDVLRVR 117
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 153 bits (389), Expect = 4e-46
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 41 YSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRSVDFETVTTFES 100
YS+E+ + + +VY N ++ ++IRAM LKI + D + A + + F +
Sbjct: 1 YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGFMT 60
Query: 101 P-YVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVP 159
IK LW D G+Q C++R REYQL DSA YYL ++DR+A PNY+PT+QD+LR RV
Sbjct: 61 AELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVK 120
Query: 160 T 160
T
Sbjct: 121 T 121
Score = 46.8 bits (111), Expect = 3e-07
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQPT 392
YL DL RI P Y+PT+QD+LR R T
Sbjct: 95 YLNDLDRIAQPNYIPTQQDVLRTRVKT 121
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 121
Score = 152 bits (386), Expect = 1e-45
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 41 YSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAE-LIRSVDFETVTTFE 99
YS E+ FI ++Y N ++ +++RAM L IQY D ++ A L+ D T
Sbjct: 1 YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMP 60
Query: 100 SPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVRVP 159
+ I+ LW D GIQ C+DR EYQL DSA YYL +++R+ P Y+PTEQD+LR RV
Sbjct: 61 KEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVK 120
Query: 160 T 160
T
Sbjct: 121 T 121
Score = 46.4 bits (110), Expect = 4e-07
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 364 HSYLGDLARIEDPGYMPTEQDILRARQPT 392
YL DL R+ PGY+PTEQD+LR+R T
Sbjct: 93 GYYLSDLERLVTPGYVPTEQDVLRSRVKT 121
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 146 bits (371), Expect = 2e-43
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 46 KRGFIKLVYQNIFMAMQSMIRAMDLLK--IQYADPTCEEKAELIRSVDFETVTTFESPYV 103
K ++ + N+ A+++++ AM L ++ A+P + + + I SV F +
Sbjct: 1 KATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFY 60
Query: 104 EAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRVR 157
E K LW D G++ CY+R EYQL D A+Y+L +ID + +Y+P++QD+LR R
Sbjct: 61 EHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 114
Score = 44.1 bits (104), Expect = 2e-06
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 355 NHLLALHVRHSYLGDLARIEDPGYMPTEQDILRAR 389
N + +L + I+ Y+P++QD+LR R
Sbjct: 80 NEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 114
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 145 bits (366), Expect = 1e-42
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 41 YSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRSVDFETVTTFES 100
+ + F ++ NI + ++ A D L I + E+ + + + + E
Sbjct: 1 FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGMFLMAFENKAGLPVEP 60
Query: 101 P----YVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQDILRV 156
YV A+ LW D GI+E + RR E+QL +S KY+L +DR+ NY P++QDIL
Sbjct: 61 ATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPSKQDILLA 120
Query: 157 R 157
R
Sbjct: 121 R 121
Score = 45.7 bits (108), Expect = 8e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 355 NHLLALHVRHSYLGDLARIEDPGYMPTEQDILRARQ 390
+ +L +L RI Y P++QDIL AR+
Sbjct: 87 SEFQLGESVKYFLDNLDRIGQLNYFPSKQDILLARK 122
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 144 bits (365), Expect = 1e-42
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 41 YSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEKAELIRSVDFETV----- 95
+ + F +Y N+ M+ ++ A + L I + D + + + + D
Sbjct: 1 FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQG 60
Query: 96 ---TTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAAPNYLPTEQD 152
T Y+ AI+ LW D GIQ YDRRRE+QL +S KY+L +D++ P+Y+P++QD
Sbjct: 61 MVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQD 120
Query: 153 ILRVR 157
IL R
Sbjct: 121 ILLAR 125
Score = 44.6 bits (105), Expect = 2e-06
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 366 YLGDLARIEDPGYMPTEQDILRARQ 390
+L +L ++ P Y+P++QDIL AR+
Sbjct: 102 FLDNLDKLGVPDYIPSQQDILLARR 126
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 52.8 bits (126), Expect = 2e-08
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFE 217
V T+GI E F ++++ F M DVGGQR ERRKWI CF +VT
Sbjct: 32 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTA------------------ 73
Query: 218 NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277
IIF+VA S Y+ ++ E NR++E+ LFK+I W + V + + +
Sbjct: 74 ----IIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL--- 126
Query: 278 IHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFILRM 329
+ F ++ + T P G A+ FI
Sbjct: 127 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEP----GEDPRVTRAKYFIRDE 174
Score = 51.3 bits (122), Expect = 4e-08
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 393 TGIIEYPFDLDGINRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIM--YSHLVD 450
+ + + NR++E+ LFK+I W + SVILFLNK+DLL EK++ S + D
Sbjct: 81 SSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIED 140
Query: 451 YFPEYDDHI 459
YFPE+ +
Sbjct: 141 YFPEFARYT 149
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 43.0 bits (100), Expect = 2e-05
Identities = 49/52 (94%), Positives = 51/52 (98%)
Query: 406 NRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEYDD 457
NRMEESKALF+TIITYPWFQ+SSVILFLNKKDLLEEKIMYSHLVDYFPEYD
Sbjct: 92 NRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 143
Score = 38.8 bits (89), Expect = 6e-04
Identities = 87/172 (50%), Positives = 101/172 (58%), Gaps = 43/172 (25%)
Query: 158 VPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKWIHCFE 217
VPTTGIIEY + MVDVGGQRSERRKWIHCFE
Sbjct: 30 VPTTGIIEY----------------------PFDLQSVIFRMVDVGGQRSERRKWIHCFE 67
Query: 218 NVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRSERRKW 277
NVTSI+FLVALSEYDQ+L ES+NENRMEESKALF+TIITYPWFQ+S
Sbjct: 68 NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS------------- 114
Query: 278 IHCFENVTFCNSVQLFSQYNVILNCMNYTIVPPLHTGPQRDAIAAREFILRM 329
+ F N L + + + ++Y P + GPQRDA AAREFIL+M
Sbjct: 115 -----VILFLNKKDLLEEKIMYSHLVDYF---PEYDGPQRDAQAAREFILKM 158
Score = 27.2 bits (59), Expect = 3.4
Identities = 21/25 (84%), Positives = 22/25 (88%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYS 42
+GTGESGKSTFIKQMRIIHGSG
Sbjct: 7 LLGTGESGKSTFIKQMRIIHGSGVP 31
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 41.4 bits (96), Expect = 7e-05
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 22/124 (17%)
Query: 153 ILRVRVPTTGIIEYPFDLEEIRFRMVDVGGQRSERRKWIHCFENVTMVDVGGQRSERRKW 212
I+ + PT GI EY F+ MVDVGGQRSER++W
Sbjct: 24 IIHGQDPTKGIHEYDFE----------------------IKNVPFKMVDVGGQRSERKRW 61
Query: 213 IHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSMVDVGGQRS 272
CF++VTSI+FLV+ SE+DQ+L E NR+ ES +F+TI+ F + + + ++
Sbjct: 62 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 121
Query: 273 ERRK 276
+ +
Sbjct: 122 DLLE 125
Score = 40.7 bits (94), Expect = 1e-04
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 406 NRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEYDDH 458
NR+ ES +F+TI+ F + S+ILFLNK DLLEEK+ + DYF E++
Sbjct: 91 NRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 143
Score = 26.8 bits (58), Expect = 4.9
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 18 FVGTGESGKSTFIKQMRIIH 37
+G GESGKSTF+KQMRIIH
Sbjct: 7 LLGAGESGKSTFLKQMRIIH 26
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 33.8 bits (76), Expect = 0.024
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 189 KWIHCFENVTMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESK 248
+ + M DVGGQRSER+KWIHCFE VT+IIF VALS+YD +L E E NRM ES
Sbjct: 36 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM 95
Query: 249 ALFKTIITYPWFQHSMV 265
LF +I WF + +
Sbjct: 96 KLFDSICNNKWFTDTSI 112
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.8 bits (63), Expect = 1.0
Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 9/153 (5%)
Query: 24 SGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYADPTCEEK 83
SGKS+ ++ + G D ++ + L + + + S +A L D
Sbjct: 13 SGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFD 72
Query: 84 AELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLMEIDRVAA 143
ELI E + R+ E A L E
Sbjct: 73 NELILKTLKEITEGKTV---------QIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY 123
Query: 144 PNYLPTEQDILRVRVPTTGIIEYPFDLEEIRFR 176
+ + L +I R
Sbjct: 124 SQEVRDLFQMKLFVDTDADTRLSRRVLRDISER 156
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 28.9 bits (63), Expect = 1.3
Identities = 17/101 (16%), Positives = 32/101 (31%)
Query: 16 NDFVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQY 75
VG SGKS I ++ + G E + + + A L +
Sbjct: 27 TAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEE 86
Query: 76 ADPTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQ 116
EL R+ + ++ I++ +A G+
Sbjct: 87 NGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLG 127
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 2.1
Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 15/152 (9%)
Query: 18 FVGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLKIQYAD 77
VG +GKSTFI++ + G + + D G + + A++ R + I +
Sbjct: 19 AVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVV----IDNTN 74
Query: 78 PTCEEKAELIRSVDFETVTTFESPYVEAIKELWADPGIQECYDRRREYQLTDSAKYYLME 137
P +A I+ V A +R RE A M
Sbjct: 75 PDVPSRARYIQCAKDAGVPC-------RCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 127
Query: 138 IDRVAAPNYLPTE----QDILRVRVPTTGIIE 165
+ PT +IL + ++
Sbjct: 128 MFSYRKQFEPPTLAEGFLEILEIPFRLQEHLD 159
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 24.3 bits (53), Expect = 9.9
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 34 RIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAM 68
RI GSG +D +K F MQ M++ M
Sbjct: 40 RIAAGSGMQVQDVNRLLKQ-----FDDMQRMMKKM 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,825,941
Number of extensions: 88118
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 35
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)