Query psy1647
Match_columns 111
No_of_seqs 128 out of 916
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:08:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 47.7 29 0.00099 18.1 4.0 26 78-103 11-36 (37)
2 2koe_A Human cannabinoid recep 20.1 8.9 0.0003 19.2 -1.6 17 18-34 7-23 (40)
3 3vw7_A Proteinase-activated re 15.9 73 0.0025 23.5 2.1 17 19-35 435-451 (484)
4 4dkl_A MU-type opioid receptor 15.0 1E+02 0.0035 22.4 2.7 16 20-35 427-442 (464)
5 3eml_A Human adenosine A2A rec 13.1 1.3E+02 0.0043 22.1 2.7 17 19-35 437-453 (488)
6 2ks9_A Substance-P receptor; w 12.7 1.3E+02 0.0046 21.1 2.7 16 20-35 293-308 (364)
7 1xr7_A Genome polyprotein; RNA 12.5 1.3E+02 0.0045 23.5 2.7 26 12-38 285-310 (460)
8 3bso_A RNA dependent RNA polym 12.3 1.9E+02 0.0065 22.8 3.6 30 12-42 298-327 (510)
9 4eiy_A Adenosine receptor A2A/ 12.2 1.4E+02 0.0048 21.6 2.7 17 19-35 396-412 (447)
10 3rze_A Histamine H1 receptor, 11.7 1.5E+02 0.005 21.5 2.7 16 19-34 413-428 (452)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=47.71 E-value=29 Score=18.07 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhH
Q psy1647 78 KVDLKISYFIVGNAILFILLFGNFYY 103 (111)
Q Consensus 78 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 103 (111)
+-.+..+++++.......+||.++|-
T Consensus 11 ELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHhhhhcc
Confidence 44678899999999999999999874
No 2
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=20.09 E-value=8.9 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy1647 18 LFLGAINCFVHVAMYSY 34 (111)
Q Consensus 18 ~~~~~~Ns~VH~iMY~Y 34 (111)
.+.+.+|+.++|+.|+.
T Consensus 7 ~~l~~~ns~lNPiIY~~ 23 (40)
T 2koe_A 7 SMLCLLNSTVNPIIYAL 23 (40)
T ss_dssp HHHHHHHHHSSTTTTBT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678899999999864
No 3
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=15.94 E-value=73 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.639 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy1647 19 FLGAINCFVHVAMYSYY 35 (111)
Q Consensus 19 ~~~~~Ns~VH~iMY~YY 35 (111)
+.+.+|+.++|+.|.+.
T Consensus 435 ~L~~~ns~iNPiIY~~~ 451 (484)
T 3vw7_A 435 CVSSISCCIDPLIYYYA 451 (484)
T ss_dssp HHHTTHHHHHHHHHHHT
T ss_pred HHHHhccccchHHHHHh
Confidence 45679999999999853
No 4
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=14.97 E-value=1e+02 Score=22.43 Aligned_cols=16 Identities=25% Similarity=0.604 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1647 20 LGAINCFVHVAMYSYY 35 (111)
Q Consensus 20 ~~~~Ns~VH~iMY~YY 35 (111)
.+.+|+.++|+.|.+.
T Consensus 427 L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHh
Confidence 5789999999999864
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=13.08 E-value=1.3e+02 Score=22.15 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy1647 19 FLGAINCFVHVAMYSYY 35 (111)
Q Consensus 19 ~~~~~Ns~VH~iMY~YY 35 (111)
+.+.+|+.++|+.|.+.
T Consensus 437 ~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 437 VLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhhhhhc
Confidence 45789999999999864
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=12.68 E-value=1.3e+02 Score=21.12 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1647 20 LGAINCFVHVAMYSYY 35 (111)
Q Consensus 20 ~~~~Ns~VH~iMY~YY 35 (111)
.+.+|+.+||+.|...
T Consensus 293 l~~~ns~~NPiiY~~~ 308 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCCL 308 (364)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999999853
No 7
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A* 1xr6_A
Probab=12.45 E-value=1.3e+02 Score=23.46 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=18.4
Q ss_pred eccCcchhHHHHHHHHHHHHHHHHHHH
Q psy1647 12 IKGEQTLFLGAINCFVHVAMYSYYFLS 38 (111)
Q Consensus 12 ~~~g~~~~~~~~Ns~VH~iMY~YY~l~ 38 (111)
.|+|+. ..+..||.+|.++-.|=++.
T Consensus 285 ~PSG~p-~Tsi~NSl~n~i~~~~a~~~ 310 (460)
T 1xr7_A 285 VPSGCS-GTSIFNSMINNIIIRTLVLD 310 (460)
T ss_dssp CCTTST-THHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCC-ccccchhHHHHHHHHHHHHH
Confidence 366654 67899999999876543333
No 8
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=12.29 E-value=1.9e+02 Score=22.84 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=20.4
Q ss_pred eccCcchhHHHHHHHHHHHHHHHHHHHhcCC
Q psy1647 12 IKGEQTLFLGAINCFVHVAMYSYYFLSAFGP 42 (111)
Q Consensus 12 ~~~g~~~~~~~~Ns~VH~iMY~YY~l~a~g~ 42 (111)
.|+|+. ..+..||.+|.+.-.|=+....|.
T Consensus 298 ~PSG~p-~Tsi~NSi~N~i~~~~a~~~~~~~ 327 (510)
T 3bso_A 298 LPSGVP-CTSQWNSIAHWLLTLCALSEVTNL 327 (510)
T ss_dssp CCTTST-THHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCC-eeeccchHHHHHHHHHHHHHhcCC
Confidence 366654 678999999998865544443454
No 9
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=12.16 E-value=1.4e+02 Score=21.62 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy1647 19 FLGAINCFVHVAMYSYY 35 (111)
Q Consensus 19 ~~~~~Ns~VH~iMY~YY 35 (111)
+.+.+|+.++|+.|...
T Consensus 396 ~l~~~ns~~NPiIY~~~ 412 (447)
T 4eiy_A 396 VLSHTNSVVNPFIYAYR 412 (447)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhHhc
Confidence 45679999999999854
No 10
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=11.75 E-value=1.5e+02 Score=21.55 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1647 19 FLGAINCFVHVAMYSY 34 (111)
Q Consensus 19 ~~~~~Ns~VH~iMY~Y 34 (111)
+.+.+|+.++|+.|..
T Consensus 413 ~L~~~ns~~NPiIY~~ 428 (452)
T 3rze_A 413 WLGYINSTLNPLIYPL 428 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhh
Confidence 4678999999999986
Done!