Query psy1647
Match_columns 111
No_of_seqs 128 out of 916
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 22:09:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1647.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1647hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 49.7 12 0.0009 18.1 4.0 26 78-103 11-36 (37)
2 d1khva_ e.8.1.4 (A:) Viral RNA 14.8 48 0.0035 24.3 2.7 23 13-36 303-325 (497)
3 d1ra6a_ e.8.1.4 (A:) Viral RNA 12.3 88 0.0064 22.5 3.6 28 12-40 286-313 (461)
4 d1xr5a_ e.8.1.4 (A:) Viral RNA 11.6 91 0.0066 22.4 3.4 27 13-40 286-312 (460)
5 d1sh0a_ e.8.1.4 (A:) Viral RNA 11.2 1E+02 0.0074 22.5 3.6 28 13-41 294-321 (502)
6 d1pd3a_ a.30.3.1 (A:) Nonstruc 9.8 75 0.0055 16.2 1.7 14 52-65 33-46 (54)
7 d1u19a_ f.13.1.2 (A:) Rhodopsi 9.2 58 0.0042 21.1 1.4 16 19-34 293-308 (348)
8 d3cx5c2 f.21.1.2 (C:1-261) Mit 7.7 1.4E+02 0.01 20.1 2.9 60 51-110 33-110 (261)
9 d2axtf1 f.23.38.1 (F:11-45) Cy 7.5 25 0.0018 16.7 -0.9 13 49-61 22-34 (35)
10 d1u09a_ e.8.1.4 (A:) Viral RNA 7.2 1.3E+02 0.0093 21.7 2.7 26 12-39 296-321 (476)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=49.74 E-value=12 Score=18.14 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhH
Q psy1647 78 KVDLKISYFIVGNAILFILLFGNFYY 103 (111)
Q Consensus 78 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 103 (111)
+-.+..+++++......-+||.++|-
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 34577889999988899999999874
No 2
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=14.83 E-value=48 Score=24.34 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=16.9
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHH
Q psy1647 13 KGEQTLFLGAINCFVHVAMYSYYF 36 (111)
Q Consensus 13 ~~g~~~~~~~~Ns~VH~iMY~YY~ 36 (111)
|+|+. ..+++||++|-+|..|=.
T Consensus 303 PSG~p-~Tsi~NSi~N~i~i~~a~ 325 (497)
T d1khva_ 303 PSGMP-FTSVINSICHWLLWSAAV 325 (497)
T ss_dssp CTTST-THHHHHHHHHHHHHHHHH
T ss_pred CCCCc-eeehhhhHHHHHHHHHHH
Confidence 55654 678999999998765533
No 3
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=12.30 E-value=88 Score=22.54 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=19.1
Q ss_pred eccCcchhHHHHHHHHHHHHHHHHHHHhc
Q psy1647 12 IKGEQTLFLGAINCFVHVAMYSYYFLSAF 40 (111)
Q Consensus 12 ~~~g~~~~~~~~Ns~VH~iMY~YY~l~a~ 40 (111)
.|+|+. ..+.+||.+|.++..|=.+...
T Consensus 286 lPSG~~-~T~iiNSi~N~i~i~~a~~~~~ 313 (461)
T d1ra6a_ 286 MPSGCS-GTSIFNSMINNLIIRTLLLKTY 313 (461)
T ss_dssp CCTBST-THHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCC-eeEeehhHHHHHHHHHHHHHhc
Confidence 356653 6789999999997555444443
No 4
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]}
Probab=11.56 E-value=91 Score=22.38 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=20.0
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhc
Q psy1647 13 KGEQTLFLGAINCFVHVAMYSYYFLSAF 40 (111)
Q Consensus 13 ~~g~~~~~~~~Ns~VH~iMY~YY~l~a~ 40 (111)
|+|+. ..+.+||.+|-++..|=.+.+.
T Consensus 286 PSG~p-~Tsi~NSi~N~i~i~~a~~~~~ 312 (460)
T d1xr5a_ 286 PSGCS-GTSIFNSMINNIIIRTLILDAY 312 (460)
T ss_dssp CTTSS-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCC-eeeehhhHHHHHHHHHHHHHHc
Confidence 55543 6789999999998877665544
No 5
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
Probab=11.22 E-value=1e+02 Score=22.49 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=18.8
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHhcC
Q psy1647 13 KGEQTLFLGAINCFVHVAMYSYYFLSAFG 41 (111)
Q Consensus 13 ~~g~~~~~~~~Ns~VH~iMY~YY~l~a~g 41 (111)
|+|+. ..+.+||++|-+.-.|=++...+
T Consensus 294 PSG~p-~Tsi~NSi~N~i~~~~a~~~~~~ 321 (502)
T d1sh0a_ 294 PSGVP-CTSQWNSIAHWLLTLCALSEVTN 321 (502)
T ss_dssp CTTST-THHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCc-eeeeehhHHHHHHHHHHHHHhhC
Confidence 56654 67899999998876554444433
No 6
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=9.75 E-value=75 Score=16.24 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.4
Q ss_pred hHHHhHHHHHHHHH
Q psy1647 52 NYITMLQIIQFILV 65 (111)
Q Consensus 52 ~~iT~~QivQF~~~ 65 (111)
..||-+|-.|..+-
T Consensus 33 eqitfmqalqllle 46 (54)
T d1pd3a_ 33 EQITFMQALQLLLE 46 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999998764
No 7
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.22 E-value=58 Score=21.09 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1647 19 FLGAINCFVHVAMYSY 34 (111)
Q Consensus 19 ~~~~~Ns~VH~iMY~Y 34 (111)
+...+|+.++|+.|.+
T Consensus 293 ~l~~~ns~iNPiIY~~ 308 (348)
T d1u19a_ 293 FFAKTSAVYNPVIYIM 308 (348)
T ss_dssp HHGGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3467999999999975
No 8
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.68 E-value=1.4e+02 Score=20.07 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=37.1
Q ss_pred hhHHHhHHHHHHHHHHhhhheeec-C----------CCCCChHHH-----H--HHHHHHHHHHHHHHHHhHhhhccCC
Q psy1647 51 KNYITMLQIIQFILVLLQHVGLIV-L----------DCKVDLKIS-----Y--FIVGNAILFILLFGNFYYKTYIKKR 110 (111)
Q Consensus 51 k~~iT~~QivQF~~~~~~~~~~~~-~----------~C~~~~~~~-----~--~~~~~~~s~l~LF~~Fy~~~Y~~~~ 110 (111)
-..+..+=++|.+.|+..+.+..- . .-+.+.++. . ......+.++=++..+|.++|+++|
T Consensus 33 G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pr 110 (261)
T d3cx5c2 33 GSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPR 110 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhccccCcc
Confidence 577788888999999876654421 0 012222211 1 2333455666688899999999876
No 9
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.52 E-value=25 Score=16.75 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=8.0
Q ss_pred hhhhHHHhHHHHH
Q psy1647 49 WWKNYITMLQIIQ 61 (111)
Q Consensus 49 ~~k~~iT~~QivQ 61 (111)
.+--.||.||.+|
T Consensus 22 fFlGai~aMqfiq 34 (35)
T d2axtf1 22 FFLGAIAAMQFIQ 34 (35)
T ss_dssp HHHHHHHHHTTCC
T ss_pred hhHhHHHHHHHhh
Confidence 3455677777654
No 10
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=7.23 E-value=1.3e+02 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=16.9
Q ss_pred eccCcchhHHHHHHHHHHHHHHHHHHHh
Q psy1647 12 IKGEQTLFLGAINCFVHVAMYSYYFLSA 39 (111)
Q Consensus 12 ~~~g~~~~~~~~Ns~VH~iMY~YY~l~a 39 (111)
.|+|+. ..+.+||.+|-+ |..|++..
T Consensus 296 lPSG~~-~T~i~NSi~N~i-~i~~a~~~ 321 (476)
T d1u09a_ 296 MPSGCS-ATSIINTILNNI-YVLYALRR 321 (476)
T ss_dssp CCTTCT-THHHHHHHHHHH-HHHHHHHH
T ss_pred cCCCCc-eeeehHHHHHHH-HHHHHHHH
Confidence 356653 678999999965 34444433
Done!