RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1647
         (111 letters)



>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide
           reductase, manganese, oxidoreductase; 1.90A {Bacillus
           subtilis}
          Length = 350

 Score = 25.4 bits (56), Expect = 4.7
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 27  VHVAMYSYYFLSAFGPRVQKYL--WWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKIS 84
           VH   YS  F++         +  W K    + +  Q I+ L +      +    ++ + 
Sbjct: 121 VHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKA-----IQKDDEISLF 175

Query: 85  YFIVGNAIL-FILLFGNFYYKTYIKKR 110
             +V +  L   L +  FYY  Y   +
Sbjct: 176 KAMVASVYLESFLFYSGFYYPLYFYGQ 202


>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
           voltage dependent, ION CH shaker, membrane protein,
           eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
           3lnm_B* 3lut_B* 2a79_B*
          Length = 514

 Score = 25.4 bits (55), Expect = 5.4
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 21/106 (19%)

Query: 9   LKFIKGEQTLFLGAINCFVHVAMYSYYFLSAFGPRVQKYLWWKNYITMLQIIQFILVL-- 66
             F        +  I+    VA+  YY         +  L ++N   ++QI + + +L  
Sbjct: 267 AGFFTN----IMNIIDI---VAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRI 319

Query: 67  ---------LQHVGLIVLDCKVDLKISYFIVGNAILFILLFGNFYY 103
                    LQ +G  +     +L +  F +    + ++LF +  Y
Sbjct: 320 FKLSRHSKGLQILGQTLKASMRELGLLIFFL---FIGVILFSSAVY 362


>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide
           reductase, four-helix bundle, dimanganese CLU
           oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A
           3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
          Length = 319

 Score = 24.6 bits (54), Expect = 8.4
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 14/88 (15%)

Query: 27  VHVAMYSYYFLSAFGP--RVQKYLWWKNYITMLQIIQFILVLLQHVGLIVLDCKVDLKIS 84
           VH   YS  F +          Y W +    + +  Q I    +    +           
Sbjct: 100 VHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPL----------- 148

Query: 85  YFIVGNAIL-FILLFGNFYYKTYIKKRK 111
              + +  L   L +  F+   Y   R 
Sbjct: 149 KKKIASVFLESFLFYSGFWLPMYFSSRG 176


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.336    0.149    0.481 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,726,497
Number of extensions: 87925
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 12
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.5 bits)