BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16470
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 192 bits (489), Expect = 1e-48, Method: Composition-based stats.
Identities = 95/197 (48%), Positives = 128/197 (64%), Gaps = 24/197 (12%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RI+IIY SGI GNLASAIF+PYRA EVGPAG+
Sbjct: 682 LRDLEKLAGWLRISIIYILSGITGNLASAIFLPYRA-----------------EVGPAGS 724
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FG+LACL VE++ W +L P +A KLL + L FGLLPW+DNFAH+ GF+ GF L
Sbjct: 725 QFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFAHISGFISGFFL 784
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVV---LLLLFYLIPIYDCELCSYFNCI 177
S+A LP++SFG D +K I ++F+++FL + L++LFY+ PI CE C CI
Sbjct: 785 SFAFLPYISFGRLDMYRKRCQI---IIFLVVFLGLFAGLVVLFYVHPI-KCEWCELLTCI 840
Query: 178 PFTNEFCADQNINLNIN 194
PFT++FC ++N +++
Sbjct: 841 PFTDKFCEKYDLNAHLH 857
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 182 bits (461), Expect = 2e-45, Method: Composition-based stats.
Identities = 91/194 (46%), Positives = 120/194 (61%), Gaps = 18/194 (9%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAIIY SG+ GNLASAIF+PYRA EVGPAG+
Sbjct: 681 LRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRA-----------------EVGPAGS 723
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FG+LACL VE+ W +L P +A KLL + L FGLLPW+DNFAH+ GF+ G L
Sbjct: 724 QFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFL 783
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLFYLIPIYDCELCSYFNCIPFT 180
S+A LP++SFG +D +K I V + + L L++LFY P+ CE C + CIPFT
Sbjct: 784 SFAFLPYISFGKFDLYRKRCQIIVFQLVFLGLLAGLVVLFYFYPV-RCEWCEFLTCIPFT 842
Query: 181 NEFCADQNINLNIN 194
++FC ++ ++
Sbjct: 843 DKFCEKYELDAQLH 856
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 182 bits (461), Expect = 2e-45, Method: Composition-based stats.
Identities = 93/197 (47%), Positives = 123/197 (62%), Gaps = 24/197 (12%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAIIY SGI GNLASAIF+PYRA EVGPAG+
Sbjct: 681 LRDLEKLAGWHRIAIIYLLSGITGNLASAIFLPYRA-----------------EVGPAGS 723
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FG+LACL VE+ W +L P +A KLL + L FGLLPW+DNFAH+ GF+ G L
Sbjct: 724 QFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGLFL 783
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIF---LVVLLLLFYLIPIYDCELCSYFNCI 177
S+A LP++SFG +D +K I ++F ++F L L++LFY P+ CE C + CI
Sbjct: 784 SFAFLPYISFGKFDLYRKRCQI---IIFQVVFLGLLAGLVVLFYFYPV-RCEWCEFLTCI 839
Query: 178 PFTNEFCADQNINLNIN 194
PFT++FC ++ ++
Sbjct: 840 PFTDKFCEKYELDAQLH 856
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 182 bits (461), Expect = 2e-45, Method: Composition-based stats.
Identities = 92/197 (46%), Positives = 124/197 (62%), Gaps = 24/197 (12%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAIIY SG+ GNLASAIF+PYRA EVGPAG+
Sbjct: 680 LRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRA-----------------EVGPAGS 722
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FG+LACL VE+ W +L P +A KLL + L FGLLPW+DNFAH+ GF+ G L
Sbjct: 723 QFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFL 782
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIF---LVVLLLLFYLIPIYDCELCSYFNCI 177
S+A LP++SFG +D +K I ++F ++F L L++LFY+ P+ CE C + CI
Sbjct: 783 SFAFLPYISFGKFDLYRKRCQI---IIFQVVFLGLLAGLVVLFYVYPV-RCEWCEFLTCI 838
Query: 178 PFTNEFCADQNINLNIN 194
PFT++FC ++ ++
Sbjct: 839 PFTDKFCEKYELDAQLH 855
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 181 bits (460), Expect = 2e-45, Method: Composition-based stats.
Identities = 92/197 (46%), Positives = 124/197 (62%), Gaps = 24/197 (12%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAIIY SG+ GNLASAIF+PYRA EVGPAG+
Sbjct: 680 LRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRA-----------------EVGPAGS 722
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FG+LACL VE+ W +L P +A KLL + L FGLLPW+DNFAH+ GF+ G L
Sbjct: 723 QFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFL 782
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIF---LVVLLLLFYLIPIYDCELCSYFNCI 177
S+A LP++SFG +D +K I ++F ++F L L++LFY+ P+ CE C + CI
Sbjct: 783 SFAFLPYISFGKFDLYRKRCQI---IVFQVVFLGLLAGLVVLFYVYPV-RCEWCEFLTCI 838
Query: 178 PFTNEFCADQNINLNIN 194
PFT++FC ++ ++
Sbjct: 839 PFTDKFCEKYELDAQLH 855
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 181 bits (460), Expect = 2e-45, Method: Composition-based stats.
Identities = 92/197 (46%), Positives = 123/197 (62%), Gaps = 24/197 (12%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAIIY SG+ GNLASAIF+PYRA EVGPAG+
Sbjct: 680 LRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRA-----------------EVGPAGS 722
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FG+LACL VE+ W +L P +A KLL + L FGLLPW+DNFAH+ GF+ G L
Sbjct: 723 QFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFL 782
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIF---LVVLLLLFYLIPIYDCELCSYFNCI 177
S+A LP++SFG +D +K I ++F ++F L L++LFY P+ CE C + CI
Sbjct: 783 SFAFLPYISFGKFDLYRKRCQI---IIFQVVFLGLLAGLVVLFYFYPV-RCEWCEFLTCI 838
Query: 178 PFTNEFCADQNINLNIN 194
PFT++FC ++ ++
Sbjct: 839 PFTDKFCEKYELDAQLH 855
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 181 bits (460), Expect = 2e-45, Method: Composition-based stats.
Identities = 92/197 (46%), Positives = 123/197 (62%), Gaps = 24/197 (12%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAIIY SG+ GNLASAIF+PYRA EVGPAG+
Sbjct: 680 LRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRA-----------------EVGPAGS 722
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FG+LACL VE+ W +L P +A KLL + L FGLLPW+DNFAH+ GF+ G L
Sbjct: 723 QFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFL 782
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIF---LVVLLLLFYLIPIYDCELCSYFNCI 177
S+A LP++SFG +D +K I ++F ++F L L++LFY P+ CE C + CI
Sbjct: 783 SFAFLPYISFGKFDLYRKRCQI---IVFQVVFLGLLAGLVVLFYFYPV-RCEWCEFLTCI 838
Query: 178 PFTNEFCADQNINLNIN 194
PFT++FC ++ ++
Sbjct: 839 PFTDKFCEKYELDAQLH 855
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 179 bits (455), Expect = 7e-45, Method: Composition-based stats.
Identities = 89/184 (48%), Positives = 113/184 (61%), Gaps = 18/184 (9%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAII+ SGI GNLASAIF+PYRA EVGPAG+
Sbjct: 681 LRDLEKLAGWHRIAIIFILSGITGNLASAIFLPYRA-----------------EVGPAGS 723
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FGLLACL VE+ WPLL+ P +A + L I L + GLLPW+DN AH+FGFL G LL
Sbjct: 724 QFGLLACLFVELFQSWPLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGLLL 783
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLFYLIPIYDCELCSYFNCIPFT 180
++A LP+++FG D+ +K LI V L+ L+L Y+ PI + + C PFT
Sbjct: 784 AFAFLPYITFGTSDKYRKRALILVSLLAFAGLFAALVLWLYIYPI-NWPWIEHLTCFPFT 842
Query: 181 NEFC 184
+ FC
Sbjct: 843 SRFC 846
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 179 bits (455), Expect = 7e-45, Method: Composition-based stats.
Identities = 90/194 (46%), Positives = 119/194 (61%), Gaps = 18/194 (9%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAIIY SG+ GNLASAIF+PYRA EVGPAG+
Sbjct: 681 LRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRA-----------------EVGPAGS 723
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FG+LACL VE+ W +L P +A KLL + L FGLLPW+DNFAH+ GF+ G L
Sbjct: 724 QFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGLFL 783
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLFYLIPIYDCELCSYFNCIPFT 180
S+A LP++SFG +D +K I + + L L++LFY P+ CE C + CIPFT
Sbjct: 784 SFAFLPYISFGKFDLYRKRCQIIIFQAVFLGLLAGLVVLFYFYPV-RCEWCEFLTCIPFT 842
Query: 181 NEFCADQNINLNIN 194
++FC ++ ++
Sbjct: 843 DKFCEKYELDAQLH 856
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 177 bits (448), Expect = 5e-44, Method: Composition-based stats.
Identities = 88/184 (47%), Positives = 112/184 (60%), Gaps = 18/184 (9%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RIAII+ SGI GNLASAIF+PYRA EVGPAG+
Sbjct: 652 LRDLEKLAGWHRIAIIFILSGITGNLASAIFLPYRA-----------------EVGPAGS 694
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FGLLACL VE+ W LL+ P +A + L I L + GLLPW+DN AH+FGFL G LL
Sbjct: 695 QFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGLLL 754
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLFYLIPIYDCELCSYFNCIPFT 180
++A LP+++FG D+ +K LI V L+ L++ Y+ PI + Y C PFT
Sbjct: 755 AFAFLPYITFGTSDKYRKRALILVSLLVFAGLFASLVIWLYVYPI-NWPWIEYLTCFPFT 813
Query: 181 NEFC 184
+ FC
Sbjct: 814 SRFC 817
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 176 bits (445), Expect = 1e-43, Method: Composition-based stats.
Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 18/184 (9%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RI+II+ SGI GNLASAIF+PYRA EVGPAG+
Sbjct: 652 LRDLEKLAGWHRISIIFILSGITGNLASAIFLPYRA-----------------EVGPAGS 694
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FGLLACL VE+ W LL+ P +A L I L + GLLPW+DN AH+FGFL G LL
Sbjct: 695 QFGLLACLFVELFQSWQLLERPWKAFFNLSAIVLFLFICGLLPWIDNIAHIFGFLSGMLL 754
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLFYLIPIYDCELCSYFNCIPFT 180
++A LP+++FG D+ +K LI V L+ L+L Y+ PI + Y C PFT
Sbjct: 755 AFAFLPYITFGTSDKYRKRALILVSLLVFAGLFASLVLWLYIYPI-NWPWIEYLTCFPFT 813
Query: 181 NEFC 184
+ FC
Sbjct: 814 SRFC 817
>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
SV=1
Length = 826
Score = 171 bits (433), Expect = 3e-42, Method: Composition-based stats.
Identities = 90/190 (47%), Positives = 120/190 (63%), Gaps = 18/190 (9%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+RDLEKL G RI+IIY SGI GNLASA+F+PYRA EVGPAG+
Sbjct: 651 LRDLEKLAGWLRISIIYILSGITGNLASALFLPYRA-----------------EVGPAGS 693
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
FGLLACL VE+ W +L P +A +KLL I L LFGLLPW+DN AH+FGFL G LL
Sbjct: 694 QFGLLACLFVELFQSWQILAKPWKAFLKLLGIVLFLFLFGLLPWIDNIAHIFGFLSGLLL 753
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLFYLIPIYDCELCSYFNCIPFT 180
S++ LP+++FG D+ +K +I + L+ + L++ Y+ PI + Y C+PFT
Sbjct: 754 SFSFLPYITFGTADKFRKRAMIIISLLVFVGLFASLVIWLYVYPI-NWAWIEYLTCLPFT 812
Query: 181 NEFCADQNIN 190
N+FC +I+
Sbjct: 813 NKFCEKYDID 822
>sp|Q76NQ1|RHDF1_DROME Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2
SV=1
Length = 1429
Score = 124 bits (310), Expect = 5e-28, Method: Composition-based stats.
Identities = 72/198 (36%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query: 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGA 60
+ DLE+L G+ R AI+Y SG GNL SAI VP+R +VGP+ + G++A LI
Sbjct: 1120 LADLERLIGTVRTAIVYIMSGFAGNLTSAILVPHRPEVGPSASLSGVVASLIA------- 1172
Query: 61 HFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLF-GFLFGFL 119
+ V W L P AL KLL + +L+ G LP+ NF L G + G L
Sbjct: 1173 ---------LLVWMHWKYLHKPHIALFKLLLLCSVLVGIGTLPYQLNFLGLLAGVICGCL 1223
Query: 120 LSYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLFYLIPIYDCELCSYFNCIPF 179
L+ +L+PF +F Y R+KKI LIW C++F ++ +++ FY+ P S F+ I F
Sbjct: 1224 LTMSLVPFTTFSKYGRKKKINLIWTCVLFHVVVYTAMIVTFYIHP-------SEFHSISF 1276
Query: 180 TNEFCADQNINLNINIDH 197
+ F + N DH
Sbjct: 1277 VDMFSNSNGYDNFTNADH 1294
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 78/243 (32%)
Query: 3 DLEKLTGSFRIAIIYFGSGI-----GGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGP 57
D+E++ G +R ++Y SGI GGN A G +C G
Sbjct: 280 DMERMIGWWRYGLVYLSSGIWGFVLGGNYAGQ----------------GEASC-----GC 318
Query: 58 AGAHFGLLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFG 117
+GA FG+LA ++++L W ++P L+ ++ + + GLLP +DNF+HL GF G
Sbjct: 319 SGALFGILALFVLDLLYGWNDRQNPWVELIIMVLGIAVSFVLGLLPGLDNFSHLGGFTMG 378
Query: 118 FLL---------------SYALLPFVS----------------------------FGP-- 132
L A P+V+ F P
Sbjct: 379 LALGLCVMRSPNALRERIGLARSPYVAMSGGVAAENADPDQNKTSTGSNIGGLGKFNPKG 438
Query: 133 -YDRQKKIFLIW-----VCLMFVIIFLVVLLLLFYLIPIYDCELCSYFNCIPFTNEFCAD 186
+ +K ++ W L+ V+I ++L++ FY P +C C F+C+P N +C
Sbjct: 439 FFAGRKPLWWAWWLVRLGALVAVLIGFILLIVNFYKYPSSNCSWCYRFSCLP-VNGWCDQ 497
Query: 187 QNI 189
N+
Sbjct: 498 GNL 500
>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1
Length = 641
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 9 GSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACL 68
G R +++F GI GNL SA+ P C I VG +G+ + LL L
Sbjct: 377 GFLRTTLLFFLGGISGNLLSAVADP----------------CSIT-VGSSGSMYALLGAL 419
Query: 69 IVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSYALLPFV 128
I + W + P ++ + + I +L G+ + DN+AH+ G L G L +A + V
Sbjct: 420 IPYCVEYWKSIPRP-GCILVFMIVVIIGILTGMAGFTDNYAHMGGALGGILWGFASITTV 478
Query: 129 S 129
S
Sbjct: 479 S 479
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
Length = 281
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 5 EKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGL 64
E+ G F++ IY SGIG L SA + Y ++ + + + VG +GA G+
Sbjct: 99 ERAYGKFKLLAIYIISGIGAALFSAYWQYY--EISNSDLWTDSTVYITIGVGASGAIMGI 156
Query: 65 LACLIVEVL-------NCWPLLKHPEQ-ALMKLLTITFILLLFGLLPWVDNFAHLFGFLF 116
A ++ ++ N P+++ ++ L L+ + + L+ GL VDN AH+ G +
Sbjct: 157 AAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLINGLQSGVDNAAHIGGAII 216
Query: 117 GFLLS--YALLP 126
G L+S Y L+P
Sbjct: 217 GALISIAYILVP 228
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFG 63
LE++ G R ++Y GSGI GN+ + + P V VG +GA FG
Sbjct: 88 LERMLGKARFLLVYAGSGIIGNIGTYVTEPLD----------------YVHVGASGAIFG 131
Query: 64 LLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSY 122
L + VL L+ E + M + + F +L+ + ++ AHLFG GFLLS+
Sbjct: 132 LFGVYLFMVLFRNELIGQ-EHSKMIITLLAFAVLMSFINSNINMMAHLFGLCGGFLLSF 189
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFG 63
LE+ G+ + + YF S I GNL S + P+ VG + A FG+ +G A
Sbjct: 113 LEERYGTKKFLVTYFLSAIVGNLLSMLMQPWALSVGASTAGFGI-------IGGMAAEVS 165
Query: 64 LLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
++ C + E LK + +L + L FG VD F HL GFL G L
Sbjct: 166 VVWCKLSEE------LKRIYSMDICILAVLIYFLSFGRT--VDTFGHLGGFLAGVAL 214
>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1
Length = 293
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFG 63
+E+ G + +YF S I GNL SA A F C ++VG + A FG
Sbjct: 139 IERRYGLLKFTGLYFASAIYGNLLSAT------------AFF----CNSLKVGASTAGFG 182
Query: 64 LLACLIVEVLNCWPLLKHPEQALMKLLT--ITFILLLFGLL-PWVDNFAHLFGFLFGF 118
L+ I E+ W ++H ++ L +++ + +LL+F L +D HL G L GF
Sbjct: 183 LIGIQICEMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGGSIDQMGHLGGLLCGF 240
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 21/122 (17%)
Query: 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFG 63
+E++ GS R +IY +GI G++AS +F PY G +GA FG L L
Sbjct: 252 VERMYGSGRFLLIYLAAGITGSIASFVFSPY-PSAGASGAIFGCLGAL------------ 298
Query: 64 LLACLIVEVLNCWPLLKHPEQALMKLLTITFILLLFGL-LPWVDNFAHLFGFLFGFLLSY 122
L V + N L+ ++ I I L FG + +DN H+ G + GF +
Sbjct: 299 ----LYVALSNRKMFLRT---IGTNIIVIIIINLGFGFAVSNIDNSGHIGGLIGGFFAAA 351
Query: 123 AL 124
AL
Sbjct: 352 AL 353
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 16/170 (9%)
Query: 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFG 63
LE + G+ RI +IY G+L +++ VG +G + LLA + + AH
Sbjct: 180 LEVMHGTARIGVIYMAGVFAGSLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMK 239
Query: 64 LLACLIVEV---LNCWPLLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLL 120
+ + V ++C L T F F P V AHL G L G +
Sbjct: 240 SASTQLGSVVIFVSC--------DLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTI 291
Query: 121 SYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLFYLIPIYDCEL 170
+ +L Y++ LIW + V V ++F LI +L
Sbjct: 292 GFLVLKNFGHREYEQ-----LIWWLALGVYCAFTVFAIVFNLINTVTAQL 336
>sp|Q6GV23|RHBL5_TOXGO Rhomboid-like protease 5 OS=Toxoplasma gondii GN=ROM5 PE=1 SV=1
Length = 841
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLI 52
LE G R ++ G+ G+L SA+ P VG +GA +GLL L+
Sbjct: 494 LEPAWGFLRTLSLWIVGGVSGSLLSAVANPCTVTVGSSGAFYGLLGALV 542
>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2
Length = 303
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEV 55
LE + R+ ++Y I G+LAS+IF P R VG +G + L+ + V
Sbjct: 150 LEMVHKGLRVGLVYLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNV 201
>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1
Length = 302
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLA 49
LE + R+ ++Y + G+LAS+IF P ++ VG +G + L+
Sbjct: 149 LEMVHKGLRVGLVYLAGVLAGSLASSIFDPLKSLVGASGGVYALMG 194
>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 GN=rep PE=3 SV=1
Length = 6729
Score = 31.6 bits (70), Expect = 4.0, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 81 HPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSYALLPFVSFGPYDRQKKIF 140
P L+ LL + L FGLL +V F FG GF L FV P+D
Sbjct: 2055 QPFVILVILLIFGNMYLRFGLLYFVAQFISTFGSFLGFHQKQWFLHFV---PFDV----- 2106
Query: 141 LIWVCLMFVIIFLVVLLLLFYLIPIY-----DCELCS 172
+C F+ F+V ++LF I DC CS
Sbjct: 2107 ---LCNEFLATFIVCKIVLFVRHIIVGCNNADCVACS 2140
>sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus NL63 GN=1a PE=1 SV=1
Length = 4060
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 81 HPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSYALLPFVSFGPYDRQKKIF 140
P L+ LL + L FGLL +V F FG GF L FV P+D
Sbjct: 2055 QPFVILVILLIFGNMYLRFGLLYFVAQFISTFGSFLGFHQKQWFLHFV---PFDV----- 2106
Query: 141 LIWVCLMFVIIFLVVLLLLFYLIPIY-----DCELCS 172
+C F+ F+V ++LF I DC CS
Sbjct: 2107 ---LCNEFLATFIVCKIVLFVRHIIVGCNNADCVACS 2140
>sp|B7GR11|UPPP_BIFLS Undecaprenyl-diphosphatase OS=Bifidobacterium longum subsp.
infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 /
NCTC 11817 / S12) GN=uppP PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 83 EQALMKLLTITFILLLFGLLPWV-----------DNFAHLFGFLFGFLLSYALLPFVS 129
E +L L +LL+FG+L WV D+ + FLFG S AL+P VS
Sbjct: 118 ETSLRNLWITVTVLLVFGVLLWVVDAKARQNKTMDDMTYRDAFLFGLGQSMALIPGVS 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.335 0.153 0.507
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,998,828
Number of Sequences: 539616
Number of extensions: 3086680
Number of successful extensions: 14037
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 13951
Number of HSP's gapped (non-prelim): 67
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)