Query psy16470
Match_columns 197
No_of_seqs 274 out of 1428
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:10:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2290|consensus 100.0 8.9E-37 1.9E-41 273.7 8.2 174 1-195 478-651 (652)
2 KOG2289|consensus 99.9 5.2E-25 1.1E-29 192.7 6.4 156 3-178 148-316 (316)
3 PTZ00101 rhomboid-1 protease; 99.9 2.7E-21 5.8E-26 167.4 14.7 146 2-168 130-278 (278)
4 COG0705 Membrane associated se 99.6 1.2E-14 2.6E-19 121.7 11.4 112 2-128 96-213 (228)
5 PRK10907 intramembrane serine 99.6 3.3E-14 7.1E-19 123.3 12.0 101 2-124 163-268 (276)
6 PF01694 Rhomboid: Rhomboid fa 99.4 3.5E-14 7.6E-19 109.8 2.4 109 2-127 34-143 (145)
7 KOG2632|consensus 96.7 0.0086 1.9E-07 51.6 8.2 105 1-123 80-195 (258)
8 KOG2980|consensus 95.5 0.016 3.4E-07 51.1 3.8 77 51-128 220-303 (310)
9 PF08551 DUF1751: Eukaryotic i 82.4 2.1 4.6E-05 31.5 3.8 31 2-32 36-66 (99)
10 COG0705 Membrane associated se 81.5 3 6.5E-05 34.6 4.9 39 90-129 168-210 (228)
11 PTZ00101 rhomboid-1 protease; 64.6 16 0.00034 32.0 5.3 43 113-157 223-265 (278)
12 PRK00701 manganese transport p 54.9 1.8E+02 0.0039 27.0 14.3 15 111-125 378-392 (439)
13 KOG4463|consensus 50.4 11 0.00024 33.1 2.0 31 2-32 78-108 (323)
14 PRK10263 DNA translocase FtsK; 40.8 2.9E+02 0.0062 29.7 10.6 15 111-126 142-156 (1355)
15 TIGR00943 2a6301s02 monovalent 33.7 73 0.0016 23.8 3.9 20 112-131 11-31 (107)
16 PRK12509 putative monovalent c 32.1 62 0.0013 25.3 3.5 51 112-162 34-88 (137)
17 PF00032 Cytochrom_B_C: Cytoch 31.1 1.7E+02 0.0036 21.2 5.5 21 109-129 29-51 (102)
18 KOG2890|consensus 29.1 1.2E+02 0.0027 27.1 5.1 115 2-131 95-220 (326)
19 COG5336 Uncharacterized protei 28.6 2.1E+02 0.0046 21.8 5.6 17 111-127 53-69 (116)
20 PRK12579 putative monovalent c 26.9 1E+02 0.0022 26.8 4.2 57 105-161 130-193 (258)
21 PHA03164 hypothetical protein; 26.9 95 0.0021 22.2 3.3 23 141-163 61-83 (88)
22 PLN02806 complex I subunit 26.5 2.5E+02 0.0053 20.1 6.2 28 59-86 9-36 (81)
23 PRK12574 putative monovalent c 25.2 88 0.0019 24.6 3.2 20 112-131 36-56 (141)
24 PF04138 GtrA: GtrA-like prote 24.6 2.7E+02 0.0058 19.9 8.0 31 106-136 28-58 (117)
25 COG4721 ABC-type cobalt transp 24.0 4.1E+02 0.0089 21.9 7.6 37 10-46 17-53 (192)
26 PRK12573 putative monovalent c 23.1 1.1E+02 0.0023 24.1 3.3 51 112-162 36-90 (140)
27 PF14898 DUF4491: Domain of un 23.1 1.1E+02 0.0023 22.6 3.1 29 4-33 26-54 (94)
28 PF02600 DsbB: Disulfide bond 20.9 1.5E+02 0.0032 23.0 3.8 12 164-175 30-41 (156)
29 COG4177 LivM ABC-type branched 20.6 5.4E+02 0.012 22.8 7.7 62 14-75 208-272 (314)
30 PRK10712 PTS system fructose-s 20.4 3.4E+02 0.0075 26.2 6.8 18 107-124 313-330 (563)
31 COG0163 UbiX 3-polyprenyl-4-hy 20.1 49 0.0011 27.5 0.9 9 56-64 11-19 (191)
No 1
>KOG2290|consensus
Probab=100.00 E-value=8.9e-37 Score=273.65 Aligned_cols=174 Identities=50% Similarity=1.009 Sum_probs=157.8
Q ss_pred ChhhHHhhchhHHHHHHHHHHHHHHHHHHHHhccccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHhcCcccc
Q psy16470 1 MRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLNCWPLLK 80 (197)
Q Consensus 1 ~~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~~~~~~~ 80 (197)
||++|+..|+.|..++|++||+.||++|++|.|+++.||+||+.|| ++++++++++++|+.+.
T Consensus 478 mrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~G-----------------ila~l~vEl~qs~~il~ 540 (652)
T KOG2290|consen 478 MRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFG-----------------ILACLFVELFQSWQILE 540 (652)
T ss_pred HHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccc-----------------hHHHHHHHHHhhhHhhh
Confidence 7899999999999999999999999999999999999999999999 89999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHhhcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16470 81 HPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLLLF 160 (197)
Q Consensus 81 ~p~~~l~~l~~~~~i~~~~g~~p~i~~~AHlGG~i~G~l~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 160 (197)
+|++++..++...++.++ |+.|+||||||+.|+++|++.+++++|+++|++.|..+|++++.+..+++..++..++++|
T Consensus 541 ~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~yrKr~~ilIs~ivf~~Lla~Lvv~f 619 (652)
T KOG2290|consen 541 RPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDLYRKRFYILISQIVFSGLLAILVVVF 619 (652)
T ss_pred hHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhe
Confidence 999988777766555554 9999999999999999999999999999999998887888989999888889999999999
Q ss_pred hhcCCCCCCcCcceeeeeCCCCccccccccccccc
Q psy16470 161 YLIPIYDCELCSYFNCIPFTNEFCADQNINLNINI 195 (197)
Q Consensus 161 ~~~~~~~C~~c~y~~Cip~~~~~C~~~~~~~~~~~ 195 (197)
|.+| -+|+||.|+||+|+++.+|+.+ .+++|+
T Consensus 620 y~~~-i~cpWce~ltClP~~~~~~e~~--eLd~~L 651 (652)
T KOG2290|consen 620 YNYP-IDCPWCEHLTCLPFTDCFCEKY--ELDKWL 651 (652)
T ss_pred eecc-cCCchhhhccccchhhhhhhhh--hhhhcC
Confidence 9654 5899999999999997666655 677765
No 2
>KOG2289|consensus
Probab=99.91 E-value=5.2e-25 Score=192.72 Aligned_cols=156 Identities=37% Similarity=0.693 Sum_probs=125.0
Q ss_pred hhHHhhchhHHHHHHHHHHHHHHHHHHHHhccccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHhcCccccch
Q psy16470 3 DLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLNCWPLLKHP 82 (197)
Q Consensus 3 ~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~~~~~~~~p 82 (197)
.+|+++|.+|+.++|++||++|++++.+++|+.++|||||++|| |+||++++...||..++.+
T Consensus 148 ~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfa-----------------LlgA~Ls~l~~Nw~~m~~~ 210 (316)
T KOG2289|consen 148 PLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFA-----------------LLGAHLSNLLTNWTIMKNK 210 (316)
T ss_pred cHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHH-----------------HHHHHHHHHHhhHHHhcch
Confidence 58999999999999999999999999999998877777666666 9999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHhhcccccCC----------c-cchhhHHHHHHHHH--HH
Q psy16470 83 EQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSYALLPFVSFGP----------Y-DRQKKIFLIWVCLM--FV 149 (197)
Q Consensus 83 ~~~l~~l~~~~~i~~~~g~~p~i~~~AHlGG~i~G~l~~~~l~p~~~~~~----------~-~~~~~~~~~~~~~~--~~ 149 (197)
...++.+++++.+++.+|+.|.+|+++|+||+++|..+++++.+..+++. + +++++....|+++. .+
T Consensus 211 ~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~~~~~~~~~~~q~~~w~~~~~~~v 290 (316)
T KOG2289|consen 211 FAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIVLRVFSKRLPYQLLLWIVLLVYLV 290 (316)
T ss_pred HHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEeccceeeeccccccccchHHHHHHHHHHH
Confidence 77777888888999999999999999999999999999999998766531 1 12222235555533 23
Q ss_pred HHHHHHHHHHHhhcCCCCCCcCcceeeee
Q psy16470 150 IIFLVVLLLLFYLIPIYDCELCSYFNCIP 178 (197)
Q Consensus 150 ~~~~~~l~~~f~~~~~~~C~~c~y~~Cip 178 (197)
.++++.++.+|-. ++|.||+++.|+|
T Consensus 291 ~~~~~~~~~if~~---~~~~~~~~~~~~~ 316 (316)
T KOG2289|consen 291 AGLFASLFNIFDG---KYCLWCHPLSCVP 316 (316)
T ss_pred HHHHHHHHHhhcC---CccccccccCCCC
Confidence 3344444444433 8999999999986
No 3
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.87 E-value=2.7e-21 Score=167.43 Aligned_cols=146 Identities=23% Similarity=0.410 Sum_probs=96.5
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHhccccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHhcCccccc
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLNCWPLLKH 81 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~~~~~~~~ 81 (197)
+.+|+.+|++|+.++|++||++|++++..+.|...++|||| |+||++|+++.+...+|+..++
T Consensus 130 ~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASg-----------------AifGLiGa~~~~lil~w~~~~~ 192 (278)
T PTZ00101 130 FTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGAST-----------------SGMGLLGIVTSELILLWHVIRH 192 (278)
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhH-----------------HHHHHHHHHHHHHHHHHHhhcc
Confidence 46899999999999999999999999999887655555555 5555888887776677766555
Q ss_pred hHHHHHHHHHHHHHHHH--Hhc-CchhhHHHHHHHHHHHHHHHHHhhcccccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy16470 82 PEQALMKLLTITFILLL--FGL-LPWVDNFAHLFGFLFGFLLSYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLLL 158 (197)
Q Consensus 82 p~~~l~~l~~~~~i~~~--~g~-~p~i~~~AHlGG~i~G~l~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (197)
+.+.+..++.+.++.+. +++ .|++||+||+||+++|++++.++.++.. + ++++.++....+..+++++.++...
T Consensus 193 ~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~--~-~~~~~~~~~~~~~~~~~~~~i~~~~ 269 (278)
T PTZ00101 193 RERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQME--N-KPSWYDHMKMASYACLALLAIVPPI 269 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh--h-cccHHHHHHHHHHHHHHHHHHHhhH
Confidence 54443333333333322 233 4899999999999999999998865432 1 1111122223344445556666666
Q ss_pred HHhhcCCCCC
Q psy16470 159 LFYLIPIYDC 168 (197)
Q Consensus 159 ~f~~~~~~~C 168 (197)
..|.+| .+|
T Consensus 270 ~~~~~~-~~~ 278 (278)
T PTZ00101 270 VLFAVP-RTC 278 (278)
T ss_pred heeecc-CCC
Confidence 666665 344
No 4
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.59 E-value=1.2e-14 Score=121.66 Aligned_cols=112 Identities=32% Similarity=0.418 Sum_probs=81.6
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHhccccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHhcCcccc-
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLNCWPLLK- 80 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~~~~~~~- 80 (197)
+.+|+.+|+.||+.+|+++|+.+++.+..+.|... .+++||||+++|++|++.......+....
T Consensus 96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~---------------~~~~GASG~i~gllga~~~~~~~~~~~~~~ 160 (228)
T COG0705 96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGG---------------APSLGASGAIFGLLGAYFLLFPFARILLLF 160 (228)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHccccc---------------CcccchhHHHHHHHHHHHHHccccchhhhh
Confidence 57999999999999999999999999998887641 24456677777799998764333222221
Q ss_pred --chHHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHHHHHHhhccc
Q psy16470 81 --HPEQALMKLLTITFILLLFGLL---PWVDNFAHLFGFLFGFLLSYALLPFV 128 (197)
Q Consensus 81 --~p~~~l~~l~~~~~i~~~~g~~---p~i~~~AHlGG~i~G~l~~~~l~p~~ 128 (197)
.|......+.+..+.+++.+.. ++|+|+||++|+++|.+++..+.+..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~ 213 (228)
T COG0705 161 LSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKL 213 (228)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333344445556666665553 37999999999999999999986643
No 5
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.56 E-value=3.3e-14 Score=123.30 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=69.3
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHhccccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHhcCc-ccc
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLNCWP-LLK 80 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~~~~-~~~ 80 (197)
+.+|+.+|++|++.+|++|++.|++.+..+.+. .+ +|+||++||++|.......++.. ...
T Consensus 163 ~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~~---------~~---------gGaSGvVygL~g~~~~~~~~~p~~~~~ 224 (276)
T PRK10907 163 GAVEKRLGSGKLIVITLISALLSGWVQSKFSGP---------WF---------GGLSGVVYALMGYVWLRGERDPQSGIY 224 (276)
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHHccc---------hh---------hHHHHHHHHHHHHHHHHhccccccchh
Confidence 568999999999999999999999999877431 12 37888888899986543322211 111
Q ss_pred chHHHHHHHHHHHHHHHH---Hhc-CchhhHHHHHHHHHHHHHHHHHh
Q psy16470 81 HPEQALMKLLTITFILLL---FGL-LPWVDNFAHLFGFLFGFLLSYAL 124 (197)
Q Consensus 81 ~p~~~l~~l~~~~~i~~~---~g~-~p~i~~~AHlGG~i~G~l~~~~l 124 (197)
.|. .++.+.++.+. .++ .++|||+||+||+++|+++++..
T Consensus 225 lp~----~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~ 268 (276)
T PRK10907 225 LPR----GLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWD 268 (276)
T ss_pred hhH----HHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh
Confidence 121 12222222222 232 47899999999999999999775
No 6
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.44 E-value=3.5e-14 Score=109.83 Aligned_cols=109 Identities=34% Similarity=0.504 Sum_probs=75.0
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHhccc-cccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHhcCcccc
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYR-ADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLNCWPLLK 80 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p~~-~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~~~~~~~ 80 (197)
+.+||++|++|+..+|+++++.+++.+.++.+.. +.+ |+||+++|++++.......+++..+
T Consensus 34 ~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~-----------------G~Sg~~~~l~~~~~~~~~~~~~~~~ 96 (145)
T PF01694_consen 34 SLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYV-----------------GASGAVFGLLGAFLFLYPQNKKRLR 96 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S----------------------SSHHHHHHHHHHHHHHHHCCCCCS-
T ss_pred hhHhhhccchHHHHHHHHHHHhhhhccccccccccccC-----------------CCcccchHHHHHHHHHHhhccchhh
Confidence 5799999999999999999999999999987765 444 5555556688888777666654443
Q ss_pred chHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHhhcc
Q psy16470 81 HPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSYALLPF 127 (197)
Q Consensus 81 ~p~~~l~~l~~~~~i~~~~g~~p~i~~~AHlGG~i~G~l~~~~l~p~ 127 (197)
.+............+.+..++.|++|+.+|++|+++|++++..+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~ 143 (145)
T PF01694_consen 97 FIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRR 143 (145)
T ss_dssp --HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 21111111111223344445579999999999999999999998654
No 7
>KOG2632|consensus
Probab=96.72 E-value=0.0086 Score=51.61 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=63.5
Q ss_pred ChhhHHhhc-hhHHHHHHHHHHHHHHHHHHHHhc-----cccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHh
Q psy16470 1 MRDLEKLTG-SFRIAIIYFGSGIGGNLASAIFVP-----YRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLN 74 (197)
Q Consensus 1 ~~~lE~~~G-~~r~l~lYl~sGi~G~l~s~~~~p-----~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~ 74 (197)
|.+.||.+| +.|++....+.++..+++...... +...+. -.+|-||..|+.++..-+.. +
T Consensus 80 g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~-------------~a~G~s~v~Fam~~~~~~~s-p 145 (258)
T KOG2632|consen 80 GSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVE-------------GAIGFSGVLFAMMAVLEVQS-P 145 (258)
T ss_pred hhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhc-------------ccccccHHHHHHHHHHhhcC-c
Confidence 568999999 999999999999999988877642 111110 12455566555555543321 1
Q ss_pred cCc-----cccchHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHH
Q psy16470 75 CWP-----LLKHPEQALMKLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSYA 123 (197)
Q Consensus 75 ~~~-----~~~~p~~~l~~l~~~~~i~~~~g~~p~i~~~AHlGG~i~G~l~~~~ 123 (197)
.++ .+..|.. +..++..++..+ +.|+.|..+|++|+++|...++-
T Consensus 146 ~r~~~~fg~~siP~~-l~Pw~lLi~~~~---lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 146 VRSRSVFGLFSIPIV-LAPWALLIATQI---LVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred ccchhhcccccccHH-HHHHHHHHHHHH---HccCchHHHHHHHHHHHHHHHHH
Confidence 111 0111211 222222222222 26999999999999999999984
No 8
>KOG2980|consensus
Probab=95.47 E-value=0.016 Score=51.07 Aligned_cols=77 Identities=25% Similarity=0.254 Sum_probs=45.1
Q ss_pred hhhhcCchhhHHHHHHHHHHHHHhcCccc---cchHHHHHHHHHHHHHHHH-Hhc---CchhhHHHHHHHHHHHHHHHHH
Q psy16470 51 LIVEVGPAGAHFGLLACLIVEVLNCWPLL---KHPEQALMKLLTITFILLL-FGL---LPWVDNFAHLFGFLFGFLLSYA 123 (197)
Q Consensus 51 ~~~~vGASGAi~Gl~ga~~~~~~~~~~~~---~~p~~~l~~l~~~~~i~~~-~g~---~p~i~~~AHlGG~i~G~l~~~~ 123 (197)
..+++|||||++++.+.... ++++-+.+ -.|.+.-..+.+-.++... -+. ..+-|++||++|-+.|...+..
T Consensus 220 ~gp~LGAsGav~ai~a~~~~-lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~ 298 (310)
T KOG2980|consen 220 AGPSLGASGAVYAILALDCT-LFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATY 298 (310)
T ss_pred cccccccchHHHHHHHHHhh-cCcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHH
Confidence 34679999999999888754 34432221 1121111111111111111 111 2467899999999999999999
Q ss_pred hhccc
Q psy16470 124 LLPFV 128 (197)
Q Consensus 124 l~p~~ 128 (197)
..+++
T Consensus 299 ~~~ri 303 (310)
T KOG2980|consen 299 LWARI 303 (310)
T ss_pred HHHHH
Confidence 87765
No 9
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=82.38 E-value=2.1 Score=31.52 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=27.7
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFV 32 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~ 32 (197)
|.+|+.+|+++++-...+..+..|++.....
T Consensus 36 ~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~ 66 (99)
T PF08551_consen 36 RYLEPIWGSREFLKFILVVNVITNLLTFLLY 66 (99)
T ss_pred HHHHHhcChHHHHHHHHHHHHHhHHHHHHHH
Confidence 6799999999999999999999998877663
No 10
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=81.50 E-value=3 Score=34.56 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCch-hh---HHHHHHHHHHHHHHHHHhhcccc
Q psy16470 90 LTITFILLLFGLLPW-VD---NFAHLFGFLFGFLLSYALLPFVS 129 (197)
Q Consensus 90 ~~~~~i~~~~g~~p~-i~---~~AHlGG~i~G~l~~~~l~p~~~ 129 (197)
...+.+....++.+. .+ ..|| .+=++|++.|.++.....
T Consensus 168 ~~~i~~~~~~~~~~~~~~~~~~va~-~aHl~G~i~G~l~~~~~~ 210 (228)
T COG0705 168 LILILIWLLYSLFSGAGSFGPSVAW-SAHLGGLIGGLLLAALLS 210 (228)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHHHHHHHHHHh
Confidence 334444455555433 33 2333 457888888888876543
No 11
>PTZ00101 rhomboid-1 protease; Provisional
Probab=64.56 E-value=16 Score=32.04 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhcccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q psy16470 113 GFLFGFLLSYALLPFVSFGPYDRQKKIFLIWVCLMFVIIFLVVLL 157 (197)
Q Consensus 113 G~i~G~l~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (197)
|=++|++.|.++-- -+.+..+.|+++..|..+....++.+..+
T Consensus 223 aHlGG~i~G~llg~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 265 (278)
T PTZ00101 223 GHLGGLLSGISMGI--LYNSQMENKPSWYDHMKMASYACLALLAI 265 (278)
T ss_pred HHHHHHHHHHHHHH--HHHhhhhhcccHHHHHHHHHHHHHHHHHH
Confidence 44556666555532 12333445566667776665555554443
No 12
>PRK00701 manganese transport protein MntH; Reviewed
Probab=54.95 E-value=1.8e+02 Score=26.96 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhh
Q psy16470 111 LFGFLFGFLLSYALL 125 (197)
Q Consensus 111 lGG~i~G~l~~~~l~ 125 (197)
....+.|+++-....
T Consensus 378 ~aqv~~~i~LP~~~~ 392 (439)
T PRK00701 378 LSQVVLSFGLPFALI 392 (439)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555544333
No 13
>KOG4463|consensus
Probab=50.42 E-value=11 Score=33.06 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=27.1
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFV 32 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~ 32 (197)
|.+||.+|+-||..+-+.++..+-+....+.
T Consensus 78 R~~ERlLGShky~~fiv~s~~~~~l~~~il~ 108 (323)
T KOG4463|consen 78 RVFERLLGSHKYSVFIVFSGTVSLLLEVILL 108 (323)
T ss_pred HHHHHHhccccceeehhHHHHHHHHHHHHHH
Confidence 7899999999999999999999887766553
No 14
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.82 E-value=2.9e+02 Score=29.71 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhhc
Q psy16470 111 LFGFLFGFLLSYALLP 126 (197)
Q Consensus 111 lGG~i~G~l~~~~l~p 126 (197)
-||+++.++ +.++.+
T Consensus 142 gGGIIG~lL-s~lL~~ 156 (1355)
T PRK10263 142 SGGVIGSLL-STTLQP 156 (1355)
T ss_pred ccchHHHHH-HHHHHH
Confidence 355555444 444433
No 15
>TIGR00943 2a6301s02 monovalent cation:proton antiporter. This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.This family is specific for the phaB and mnhB proteins.
Probab=33.66 E-value=73 Score=23.81 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHh-hcccccC
Q psy16470 112 FGFLFGFLLSYAL-LPFVSFG 131 (197)
Q Consensus 112 GG~i~G~l~~~~l-~p~~~~~ 131 (197)
|||.+|++.+..+ +-+..++
T Consensus 11 GGF~gGli~a~a~iL~~la~g 31 (107)
T TIGR00943 11 GGFVAGLLTASSLILITIAFG 31 (107)
T ss_pred chHHHHHHHHHHHHHHHHHCC
Confidence 7888888887654 3334444
No 16
>PRK12509 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=32.11 E-value=62 Score=25.32 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHh-hcccccCCccc---hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16470 112 FGFLFGFLLSYAL-LPFVSFGPYDR---QKKIFLIWVCLMFVIIFLVVLLLLFYL 162 (197)
Q Consensus 112 GG~i~G~l~~~~l-~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~f~~ 162 (197)
|||.+|.+.+..+ +-+..++..+- .+++...+.+..+++.....+..+++.
T Consensus 34 GGF~gGli~a~a~~L~~la~g~~~~~~~~~~~~~~~~~~Gll~~~~tGl~~l~~G 88 (137)
T PRK12509 34 GGFIGGLVAAAAFALYLIANGIAAARRLLRVDPLRLLAAGLLVAVLSGLPALFMG 88 (137)
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7888888887643 23333432211 111233445554444444455555543
No 17
>PF00032 Cytochrom_B_C: Cytochrome b(C-terminal)/b6/petD; InterPro: IPR005798 In the mitochondrion of eukaryotes and in aerobic prokaryotes, cytochrome b is a component of respiratory chain complex III (1.10.2.2 from EC) - also known as the bc1 complex or ubiquinol-cytochrome c reductase. In plant chloroplasts and cyanobacteria, there is a analogous protein, cytochrome b6, a component of the plastoquinone-plastocyanin reductase (1.10.99.1 from EC), also known as the b6f complex. Cytochrome b/b6 [, ] is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. In plants and cyanobacteria, cytochrome b6 consists of two subunits encoded by the petB and petD genes. The sequence of petB is colinear with the N-terminal part of mitochondrial cytochrome b, while petD corresponds to the C-terminal part. Cytochrome b/b6 non-covalently binds two haem groups, known as b562 and b566. Four conserved histidine residues are postulated to be the ligands of the iron atoms of these two haem groups. Apart from regions around some of the histidine haem ligands, there are a few conserved regions in the sequence of b/b6. The best conserved of these regions includes an invariant P-E-W triplet which lies in the loop that separates the fifth and sixth transmembrane segments. It seems to be important for electron transfer at the ubiquinone redox site - called Qz or Qo (where o stands for outside) - located on the outer side of the membrane. This entry is the C terminus of these proteins.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016020 membrane; PDB: 2E76_B 2D2C_B 1VF5_B 2E74_B 2E75_B 2ZT9_B 2YIU_D 1Q90_D 1ZRT_C 1PPJ_P ....
Probab=31.12 E-value=1.7e+02 Score=21.20 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=9.8
Q ss_pred HHHHHHHH--HHHHHHHhhcccc
Q psy16470 109 AHLFGFLF--GFLLSYALLPFVS 129 (197)
Q Consensus 109 AHlGG~i~--G~l~~~~l~p~~~ 129 (197)
.+++|.+. +.++...++|..+
T Consensus 29 ~k~~Gv~~~~~~~~~l~~lP~ld 51 (102)
T PF00032_consen 29 NKLGGVIAMGLSILILFLLPFLD 51 (102)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHT
T ss_pred cccceeeecchhhhhHHHHHhhc
Confidence 34455552 2233445566654
No 18
>KOG2890|consensus
Probab=29.13 E-value=1.2e+02 Score=27.08 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=57.0
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHh-------ccccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHh
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFV-------PYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLN 74 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~-------p~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~ 74 (197)
+.+|+.+|+..++..|.+.-..-+++..... .+..- -+++-.|.-|-..|++-++ -...+
T Consensus 95 ~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~------------L~~~i~G~~gilaGilVa~-kQllp 161 (326)
T KOG2890|consen 95 KFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVY------------LYIPIHGTTGILAGILVAW-KQLLP 161 (326)
T ss_pred eeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceE------------EEEEeccchHHHHHHHHHH-HHHcC
Confidence 3589999999999888776544443332221 11000 0112234444444444443 12333
Q ss_pred cCccccchHHHHH----HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHhhcccccC
Q psy16470 75 CWPLLKHPEQALM----KLLTITFILLLFGLLPWVDNFAHLFGFLFGFLLSYALLPFVSFG 131 (197)
Q Consensus 75 ~~~~~~~p~~~l~----~l~~~~~i~~~~g~~p~i~~~AHlGG~i~G~l~~~~l~p~~~~~ 131 (197)
+..+++.|..++. .+..++ +.++.. .-....++.+.-+..|.+.++..+.+.+-.
T Consensus 162 d~~il~~~~~r~~~~~lP~~~l~-~~~il~-i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h 220 (326)
T KOG2890|consen 162 DTIILELKSGRFLYAHLPLLVLF-LSLILS-IITFLVFASLPSITFGVLVSWTYLRFYQRH 220 (326)
T ss_pred ceeEEeccchhhhhhhCCHHHHH-HHHHHH-HHHHHHhhhhHHHHHhhhhhhhhheecccC
Confidence 3333332322221 111111 111111 124567777778899999999998765433
No 19
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.61 E-value=2.1e+02 Score=21.79 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy16470 111 LFGFLFGFLLSYALLPF 127 (197)
Q Consensus 111 lGG~i~G~l~~~~l~p~ 127 (197)
++|.+.|..+|+++..+
T Consensus 53 IsGilVGa~iG~llD~~ 69 (116)
T COG5336 53 ISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56778888888887544
No 20
>PRK12579 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=26.89 E-value=1e+02 Score=26.80 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=27.2
Q ss_pred hhHHHHH---HHHHHHHHHHHHh-hcccccCCccch--hhHH-HHHHHHHHHHHHHHHHHHHHh
Q psy16470 105 VDNFAHL---FGFLFGFLLSYAL-LPFVSFGPYDRQ--KKIF-LIWVCLMFVIIFLVVLLLLFY 161 (197)
Q Consensus 105 i~~~AHl---GG~i~G~l~~~~l-~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~f~ 161 (197)
+-.-+|. |||.+|++.+..+ +-+..++.++++ +.+. ..+.++.+++.....+..+++
T Consensus 130 l~l~GH~~PGGGF~gGlI~a~A~iL~~la~G~~~~~~~~~~~~~~l~~~Glli~~~tGl~~ll~ 193 (258)
T PRK12579 130 TILGGHITPGGGFQGGALIAAAYILSIVAFGSKSPLWFKHHFLEKLEAFGALLFMLLGVLGMFV 193 (258)
T ss_pred HHHhCCCCCCchHHHHHHHHHHHHHHHHHCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444553 8888888887653 333344332211 1111 224444444444444444443
No 21
>PHA03164 hypothetical protein; Provisional
Probab=26.87 E-value=95 Score=22.16 Aligned_cols=23 Identities=17% Similarity=0.560 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy16470 141 LIWVCLMFVIIFLVVLLLLFYLI 163 (197)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~f~~~ 163 (197)
+...++...++++++++...+.+
T Consensus 61 lvLtgLaIamILfiifvlyvFnV 83 (88)
T PHA03164 61 LVLTGLAIAMILFIIFVLYVFNV 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHheee
Confidence 44455666666666666555443
No 22
>PLN02806 complex I subunit
Probab=26.48 E-value=2.5e+02 Score=20.13 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHhcCccccchHHHH
Q psy16470 59 GAHFGLLACLIVEVLNCWPLLKHPEQAL 86 (197)
Q Consensus 59 GAi~Gl~ga~~~~~~~~~~~~~~p~~~l 86 (197)
||++|+=-.+....++.-+.+++|+.-.
T Consensus 9 GA~lGlg~qlysNalRKLP~mrhPWeHV 36 (81)
T PLN02806 9 GALLGLGTQLYSNALRKLPLMRHPWEHV 36 (81)
T ss_pred HHHHHHHHHHHHhHHhhCccccCcHHHH
Confidence 5677776666677777788888998754
No 23
>PRK12574 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=25.17 E-value=88 Score=24.56 Aligned_cols=20 Identities=45% Similarity=0.819 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHh-hcccccC
Q psy16470 112 FGFLFGFLLSYAL-LPFVSFG 131 (197)
Q Consensus 112 GG~i~G~l~~~~l-~p~~~~~ 131 (197)
|||.+|++.+..+ +-+..++
T Consensus 36 GGF~gGli~a~a~iL~~la~G 56 (141)
T PRK12574 36 GGFIGGLIFSSAFILMFLAFG 56 (141)
T ss_pred ccHHHHHHHHHHHHHHHHHcC
Confidence 7888888887654 3333444
No 24
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=24.60 E-value=2.7e+02 Score=19.90 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccCCccch
Q psy16470 106 DNFAHLFGFLFGFLLSYALLPFVSFGPYDRQ 136 (197)
Q Consensus 106 ~~~AHlGG~i~G~l~~~~l~p~~~~~~~~~~ 136 (197)
...|+.-+++.|.+..+.+-.+.+|+...+.
T Consensus 28 ~~~A~~ia~~~~~~~~f~ln~~~tF~~~~~~ 58 (117)
T PF04138_consen 28 YLLANVIAFIVAIIFNFILNRRFTFRSRGRS 58 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 5668888999999999999888888765554
No 25
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=24.04 E-value=4.1e+02 Score=21.89 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccccCCchhhhh
Q psy16470 10 SFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFG 46 (197)
Q Consensus 10 ~~r~l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifG 46 (197)
+.-|..+|+..+..+|+.+..++|....-++.+-.+|
T Consensus 17 si~fgvvfl~w~~~~~v~at~lhp~ale~~~~~i~~G 53 (192)
T COG4721 17 SIVFGVVFLGWGYVGNVLATLLHPLALEPFANEILFG 53 (192)
T ss_pred HHHHHhheeehhhhhHHHHHhcchhhcCccccchHHH
Confidence 3457788999999999999999987655666666666
No 26
>PRK12573 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=23.06 E-value=1.1e+02 Score=24.07 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHh-hcccccCCccchh---hHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16470 112 FGFLFGFLLSYAL-LPFVSFGPYDRQK---KIFLIWVCLMFVIIFLVVLLLLFYL 162 (197)
Q Consensus 112 GG~i~G~l~~~~l-~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~f~~ 162 (197)
|||.+|++.+..+ +.+..++..+-++ .+...+.+...++.....+..++..
T Consensus 36 GGF~gGli~a~a~iL~~la~G~~~~~~~~~~~~~~l~~~Gll~~~~~G~~~l~~G 90 (140)
T PRK12573 36 GGFIGGLITASALVILLLAFDIKTVRRALPFDFKILAGIGLLFAIATGLASIFFG 90 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888888887654 3333444321111 1122344444444444444544443
No 27
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=23.05 E-value=1.1e+02 Score=22.65 Aligned_cols=29 Identities=31% Similarity=0.289 Sum_probs=23.7
Q ss_pred hHHhhchhHHHHHHHHHHHHHHHHHHHHhc
Q psy16470 4 LEKLTGSFRIAIIYFGSGIGGNLASAIFVP 33 (197)
Q Consensus 4 lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p 33 (197)
.|.++|. |..-+|++.|+....+|.....
T Consensus 26 ~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~~~ 54 (94)
T PF14898_consen 26 GEYYFGT-RIWPIFLLAGIACIIASLFVSN 54 (94)
T ss_pred EEEecCC-CcHHHHHHHHHHHHHHHHHHcc
Confidence 5788888 5778999999999998887753
No 28
>PF02600 DsbB: Disulfide bond formation protein DsbB; InterPro: IPR003752 Disulphide bonds contribute to folding, maturation, stability, and regulation of proteins, in particular those localized out of the cytosol. Oxidation of selected pairs of cysteines to disulphide in vivo requires cellular factors present in the bacterial periplasmic space or in the endoplasmic reticulum of eukaryotic cells [, ]. DsbB is a protein component of the pathway that leads to disulphide bond formation in periplasmic proteins of Escherichia coli and other bacteria. The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulphide bonds []. DsbB acts as a redox potential transducer across the cytoplasmic membrane. It is a membrane protein which spans the membrane four times with both the N- and C-termini of the protein are in the cytoplasm. Each of the periplasmic domains of the protein has two essential cysteines. The two cysteines in the first periplasmic domain are in a Cys-X-Y-Cys configuration that is characteristic of the active site of other proteins involved in disulphide bond formation, including DsbA and protein disulphide isomerase []. This entry also includes disulphide bond formation protein BdbC from Bacillus subtilis which functionally corresponds to the well-characterised E. coli DsbB []. ; GO: 0015035 protein disulfide oxidoreductase activity, 0016020 membrane; PDB: 2ZUP_B 3E9J_F 2ZUQ_D 2K74_A 2LEG_B 2HI7_B 2K73_A 2L0O_A 2L0M_A 2L0N_A ....
Probab=20.86 E-value=1.5e+02 Score=22.99 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=6.5
Q ss_pred CCCCCCcCccee
Q psy16470 164 PIYDCELCSYFN 175 (197)
Q Consensus 164 ~~~~C~~c~y~~ 175 (197)
...+|+.|-|-.
T Consensus 30 g~~PC~LC~~QR 41 (156)
T PF02600_consen 30 GLQPCPLCLYQR 41 (156)
T ss_dssp TT---SHHCCCC
T ss_pred CCCCcHHHHHHH
Confidence 456999998753
No 29
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=20.55 E-value=5.4e+02 Score=22.79 Aligned_cols=62 Identities=29% Similarity=0.428 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCchhhhhhhh--hhhhhcCchhhHHH-HHHHHHHHHHhc
Q psy16470 14 AIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLA--CLIVEVGPAGAHFG-LLACLIVEVLNC 75 (197)
Q Consensus 14 l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifGl~g--~~~~~vGASGAi~G-l~ga~~~~~~~~ 75 (197)
+..|.+|+..++++..++..+...+.++.--+-... ....-+|=.|.+.| ++|+.+....++
T Consensus 208 l~aF~isa~~AGiAGaL~a~~~~~v~p~~f~~~~S~~~l~~vvlGG~Gt~~G~v~Ga~l~~~~~~ 272 (314)
T COG4177 208 LLAFVISAAIAGIAGALYALYLGFVSPESFSFTLSIEVLAMVVLGGAGTLFGALLGAVLVVLLKE 272 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhceeChhhccHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHH
Confidence 346777888888777777655544444321111000 11223566666666 667766655444
No 30
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=20.42 E-value=3.4e+02 Score=26.18 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy16470 107 NFAHLFGFLFGFLLSYAL 124 (197)
Q Consensus 107 ~~AHlGG~i~G~l~~~~l 124 (197)
..+-+||+++|++.+++-
T Consensus 313 ~~GFlG~Ilag~lagyv~ 330 (563)
T PRK10712 313 GSGFIGGIIAGFLAGYVA 330 (563)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 467788888888888764
No 31
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=20.06 E-value=49 Score=27.45 Aligned_cols=9 Identities=44% Similarity=1.047 Sum_probs=6.2
Q ss_pred CchhhHHHH
Q psy16470 56 GPAGAHFGL 64 (197)
Q Consensus 56 GASGAi~Gl 64 (197)
||||+++|+
T Consensus 11 GASG~iygv 19 (191)
T COG0163 11 GASGAIYGV 19 (191)
T ss_pred ccccHHHHH
Confidence 677777664
Done!