Query psy16470
Match_columns 197
No_of_seqs 274 out of 1428
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:10:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.7 4.9E-16 1.7E-20 125.2 11.4 101 2-124 73-178 (181)
2 2nr9_A Protein GLPG homolog; i 99.6 1.9E-16 6.6E-21 129.2 5.1 107 2-126 78-185 (196)
3 2hgo_A CASSIICOLIN; toxin, dis 35.0 11 0.00037 20.2 0.5 14 174-187 4-17 (27)
4 1c4e_A Protein (gurmarin); swe 25.6 22 0.00076 20.0 0.8 22 176-197 10-31 (35)
5 2hlg_A Fruit-specific protein; 16.6 34 0.0012 20.0 0.3 9 165-173 15-23 (39)
6 3a9j_C Mitogen-activated prote 11.1 81 0.0028 17.4 0.8 10 167-176 10-19 (34)
7 1k1f_A Breakpoint cluster regi 10.6 1.3E+02 0.0046 19.8 1.8 21 2-22 43-63 (72)
8 2lw6_A Avrpiz-T protein; plant 9.6 1.4E+02 0.0047 19.6 1.6 22 170-191 51-72 (80)
9 3kp9_A Vkorc1/thioredoxin doma 9.3 7.7E+02 0.026 20.2 7.1 16 17-32 23-38 (291)
10 1nj3_A NPL4; NZF domain, rubre 8.8 1.2E+02 0.004 16.3 0.9 13 167-179 8-20 (31)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.66 E-value=4.9e-16 Score=125.22 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=69.5
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHhccccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHhcCcc-cc
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLNCWPL-LK 80 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~~~~~-~~ 80 (197)
+.+|+.+|++|++.+|+++++.|++++..+.|.. + +||||+++|++++.++...++++. ..
T Consensus 73 ~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~-----------------vGaSGai~gl~g~~~~~~~~~p~~~~~ 134 (181)
T 2xov_A 73 GAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-F-----------------GGLSGVVYALMGYVWLRGERDPQSGIY 134 (181)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-C-----------------CCSHHHHHHHHHHHHHHHHHCGGGSCC
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-c-----------------eeHHHHHHHHHHHHHHHHhhCcCceee
Confidence 5789999999999999999999999999987642 3 455666666888765432222211 11
Q ss_pred chHHHHHHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHHHHHHh
Q psy16470 81 HPEQALMKLLTITFILLLFGL----LPWVDNFAHLFGFLFGFLLSYAL 124 (197)
Q Consensus 81 ~p~~~l~~l~~~~~i~~~~g~----~p~i~~~AHlGG~i~G~l~~~~l 124 (197)
.|.+.. ...++.+..++ .|++||+||+||+++|++++..+
T Consensus 135 l~~~~~----~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 178 (181)
T 2xov_A 135 LQRGLI----IFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178 (181)
T ss_dssp CCHHHH----HHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHH----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 232222 12222233333 36999999999999999999876
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.62 E-value=1.9e-16 Score=129.20 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=70.3
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHhccccccCCchhhhhhhhhhhhhcCchhhHHHHHHHHHHHHHhcCccccc
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADVGPAGAHFGLLACLIVEVGPAGAHFGLLACLIVEVLNCWPLLKH 81 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi~G~l~s~~~~p~~~~vGASgaifGl~g~~~~~vGASGAi~Gl~ga~~~~~~~~~~~~~~ 81 (197)
+.+|+.+|++|++.+|+++++.|++++..+.|.. + +||||++||++|+.+.....+++....
T Consensus 78 ~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~-----------------vGaSGai~gl~g~~~~~~~~~~~~~~~ 139 (196)
T 2nr9_A 78 GMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-F-----------------FGLSGVVYAVLGYVFIRDKLNHHLFDL 139 (196)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-C-----------------CCSHHHHHHHHHHHHHHHHSSTTSCCC
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-e-----------------eeHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 5799999999999999999999999999987643 3 455666666888765543333222111
Q ss_pred hHHHHHHHHHHHHHHHHHh-cCchhhHHHHHHHHHHHHHHHHHhhc
Q psy16470 82 PEQALMKLLTITFILLLFG-LLPWVDNFAHLFGFLFGFLLSYALLP 126 (197)
Q Consensus 82 p~~~l~~l~~~~~i~~~~g-~~p~i~~~AHlGG~i~G~l~~~~l~p 126 (197)
|.+......+.+++.+... ..+++||+||+||+++|++++..+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 140 PEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp CCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 2111111111122222111 13489999999999999999998854
No 3
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=35.02 E-value=11 Score=20.20 Aligned_cols=14 Identities=43% Similarity=1.141 Sum_probs=12.1
Q ss_pred eeeeeCCCCccccc
Q psy16470 174 FNCIPFTNEFCADQ 187 (197)
Q Consensus 174 ~~Cip~~~~~C~~~ 187 (197)
.+|+++.++||.++
T Consensus 4 vscv~fgngfcgdn 17 (27)
T 2hgo_A 4 VSCVNFGNGFCGDN 17 (27)
T ss_dssp CSCEEETTTEEECS
T ss_pred eEeEeecCccccCC
Confidence 57999999999875
No 4
>1c4e_A Protein (gurmarin); sweet taste suppression, cystine knot, sweet taste transduction, plant protein; HET: PCA; NMR {Gymnema sylvestre} SCOP: g.3.4.1 PDB: 1gur_A*
Probab=25.64 E-value=22 Score=19.97 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=12.1
Q ss_pred eeeCCCCcccccccccccccCC
Q psy16470 176 CIPFTNEFCADQNINLNINIDH 197 (197)
Q Consensus 176 Cip~~~~~C~~~~~~~~~~~~~ 197 (197)
|||+--+-|++-.-+-..|-||
T Consensus 10 cipyyldccepleckkvnwwdh 31 (35)
T 1c4e_A 10 CIPYYLDCCEPLECKKVNWWDH 31 (35)
T ss_dssp CCTTTCCCSSSCCEEESSSSCE
T ss_pred ecchhhcccChhhccccccccc
Confidence 5666555566554444455555
No 5
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=16.58 E-value=34 Score=20.02 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=7.1
Q ss_pred CCCCCcCcc
Q psy16470 165 IYDCELCSY 173 (197)
Q Consensus 165 ~~~C~~c~y 173 (197)
++-|+||+.
T Consensus 15 ITlC~wCK~ 23 (39)
T 2hlg_A 15 ITLCQFCKE 23 (39)
T ss_dssp SSSCCEEEE
T ss_pred EEeccccee
Confidence 567999985
No 6
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=11.12 E-value=81 Score=17.38 Aligned_cols=10 Identities=30% Similarity=1.165 Sum_probs=8.7
Q ss_pred CCCcCcceee
Q psy16470 167 DCELCSYFNC 176 (197)
Q Consensus 167 ~C~~c~y~~C 176 (197)
.|+-|.|+|=
T Consensus 10 ~C~~CT~~N~ 19 (34)
T 3a9j_C 10 NCTACTFLNH 19 (34)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCccccC
Confidence 4999999994
No 7
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=10.61 E-value=1.3e+02 Score=19.83 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=17.8
Q ss_pred hhhHHhhchhHHHHHHHHHHH
Q psy16470 2 RDLEKLTGSFRIAIIYFGSGI 22 (197)
Q Consensus 2 ~~lE~~~G~~r~l~lYl~sGi 22 (197)
|.+|+....-||-.+|+=+-+
T Consensus 43 rrLE~evn~ErFrmIYLQTlL 63 (72)
T 1k1f_A 43 RRLEQEVNQERFRMIYLQTLL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 679999999999999986543
No 8
>2lw6_A Avrpiz-T protein; plant resistance gene, avirulence protein, protein degradation, apoptosis; NMR {Magnaporthe oryzae}
Probab=9.60 E-value=1.4e+02 Score=19.55 Aligned_cols=22 Identities=23% Similarity=0.705 Sum_probs=15.7
Q ss_pred cCcceeeeeCCCCccccccccc
Q psy16470 170 LCSYFNCIPFTNEFCADQNINL 191 (197)
Q Consensus 170 ~c~y~~Cip~~~~~C~~~~~~~ 191 (197)
-|+|+.|.+...+|-.....++
T Consensus 51 hcnylkctnlaagfsagtstdv 72 (80)
T 2lw6_A 51 HCNYLKCTNLAAGFSAGTSTDV 72 (80)
T ss_dssp SCCCEEEESCBTTBEECCCCTT
T ss_pred ccceeeecchhhhccCCcccce
Confidence 3699999998777766554433
No 9
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=9.26 E-value=7.7e+02 Score=20.20 Aligned_cols=16 Identities=19% Similarity=-0.035 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16470 17 YFGSGIGGNLASAIFV 32 (197)
Q Consensus 17 Yl~sGi~G~l~s~~~~ 32 (197)
..+.++.|-+.+....
T Consensus 23 ~~~l~~iGl~~s~yLt 38 (291)
T 3kp9_A 23 LAILAGLGSLLTAYLT 38 (291)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556666665553
No 10
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=8.83 E-value=1.2e+02 Score=16.30 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=9.8
Q ss_pred CCCcCcceeeeeC
Q psy16470 167 DCELCSYFNCIPF 179 (197)
Q Consensus 167 ~C~~c~y~~Cip~ 179 (197)
.|+-|.|+|=-..
T Consensus 8 ~C~~CTf~N~~~~ 20 (31)
T 1nj3_A 8 ACQHCTFMNQPGT 20 (31)
T ss_dssp ECSSSCCEECSSC
T ss_pred cCCcccccCCCCC
Confidence 5999999994333
Done!