BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16471
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 178 bits (452), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 100/152 (65%), Gaps = 46/152 (30%)
Query: 2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
+AM+VDT P+ + + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56
Query: 62 QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
QANQAS TSEECTVAWGVCNHAFHFHCI
Sbjct: 57 QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 84
Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 85 --------SRWLKTRQVCPLDNREWEFQKYGH 108
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 99/152 (65%), Gaps = 46/152 (30%)
Query: 2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
+M+VDT P+ + + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 1 GSMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 54
Query: 62 QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
QANQAS TSEECTVAWGVCNHAFHFHCI
Sbjct: 55 QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 82
Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 83 --------SRWLKTRQVCPLDNREWEFQKYGH 106
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 95/143 (66%), Gaps = 40/143 (27%)
Query: 11 NVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTS 70
+V+ P+ + + KKRF+VKKWNAVALWAWDIVVDNCAICRNHI DLCIECQANQAS TS
Sbjct: 4 DVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIXDLCIECQANQASATS 63
Query: 71 EECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCIS 130
EECTVAWGVCNHAFHFHCI S
Sbjct: 64 EECTVAWGVCNHAFHFHCI----------------------------------------S 83
Query: 131 RWLKTRQVCPLDNREWEFQKYGH 153
RWLKTRQVCPLDNREWEFQKYGH
Sbjct: 84 RWLKTRQVCPLDNREWEFQKYGH 106
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 95/148 (64%), Gaps = 43/148 (29%)
Query: 9 EENVELPTS---STTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 65
EEN+ + + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 10 EENLYFQGGGRGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
Query: 66 ASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 125
AS TSEECTVAWGVCNHAFHFHCI
Sbjct: 70 ASATSEECTVAWGVCNHAFHFHCI------------------------------------ 93
Query: 126 FHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 94 ----SRWLKTRQVCPLDNREWEFQKYGH 117
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 91/137 (66%), Gaps = 40/137 (29%)
Query: 17 SSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVA 76
+ + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS TSEECTVA
Sbjct: 2 GTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVA 61
Query: 77 WGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR 136
WGVCNHAFHFHCI SRWLKTR
Sbjct: 62 WGVCNHAFHFHCI----------------------------------------SRWLKTR 81
Query: 137 QVCPLDNREWEFQKYGH 153
QVCPLDNREWEFQKYGH
Sbjct: 82 QVCPLDNREWEFQKYGH 98
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/130 (67%), Positives = 89/130 (68%), Gaps = 40/130 (30%)
Query: 24 KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 83
KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS TSEECTVAWGVCNHA
Sbjct: 1 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA 60
Query: 84 FHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143
FHFHCI SRWLKTRQVCPLDN
Sbjct: 61 FHFHCI----------------------------------------SRWLKTRQVCPLDN 80
Query: 144 REWEFQKYGH 153
REWEFQKYGH
Sbjct: 81 REWEFQKYGH 90
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 85/130 (65%), Gaps = 40/130 (30%)
Query: 24 KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 83
KKRF+VKK NA A AWDIVVDNCAICRN
Sbjct: 11 KKRFEVKKSNASAQSAWDIVVDNCAICRN------------------------------- 39
Query: 84 FHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143
HIMDLCIECQANQAS TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN
Sbjct: 40 ---------HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 90
Query: 144 REWEFQKYGH 153
REWEFQKYGH
Sbjct: 91 REWEFQKYGH 100
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 89 ISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148
I R +MD C+ CQA E+C V WG CNH+FH C+S W+K CPL ++W
Sbjct: 20 ICRVQVMDACLRCQA---ENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76
Query: 149 QKYG 152
Q+ G
Sbjct: 77 QRIG 80
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 37 LWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCIS 90
+W+WD+ D CAICR +MD C+ C QA E+C V WG CNH+FH C+S
Sbjct: 8 MWSWDVECDTCAICRVQVMDACLRC---QAENKQEDCVVVWGECNHSFHNCCMS 58
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDN 143
C HAFH C+ +WL+ R+VCPL N
Sbjct: 36 CKHAFHRKCLIKWLEVRKVCPLCN 59
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNH FH C+ +WLK + CP+
Sbjct: 44 CNHEFHAKCVDKWLKANRTCPI 65
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 141
MD +EC A E C H FH C+ WL + CPL
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 48
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C HAF + CI+RW++ CPL
Sbjct: 24 CLHAFCYVCITRWIRQNPTCPL 45
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNH FH CI WL+ CP+
Sbjct: 36 CNHLFHDSCIVPWLEQHDSCPV 57
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 149
C H FH C+ +WL T + CP+ + E Q
Sbjct: 35 CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C+H FH C+S WL+ CP+
Sbjct: 61 CHHYFHKPCVSIWLQKSGTCPV 82
>pdb|3KIC|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
Length = 736
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 118 GVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
GV N + ++HC S+WL R V R W Y +
Sbjct: 220 GVGNSSGNWHCDSQWLGDR-VITTSTRTWALPTYNN 254
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 152
C H+F +CI+ W+K + CP+ ++ + + Y
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 103
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 6 VDTEENVELPTSSTTKGEKKRFDVKKWNAVA 36
V+ ++ +ELPTS+ E+ FD+K + A
Sbjct: 32 VEEDQTLELPTSAKDIAEQNGFDIKGYRFTA 62
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 152
C H+F +CI+ W+K + CP+ ++ + + Y
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 103
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 152
C H+F +CI+ W+K + CP+ ++ + + Y
Sbjct: 82 CAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.130 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,749,034
Number of Sequences: 62578
Number of extensions: 162288
Number of successful extensions: 459
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 44
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)