BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16471
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W5E1|RBX1A_DROME RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1
Length = 108
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/150 (65%), Positives = 105/150 (70%), Gaps = 42/150 (28%)
Query: 4 MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
MEVD E+ E+P+SS+ KG+KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA
Sbjct: 1 MEVD-EDGYEVPSSSS-KGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 58
Query: 64 NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
NQAS TSEECTVAWGVCNHAFHFHCI
Sbjct: 59 NQASATSEECTVAWGVCNHAFHFHCI---------------------------------- 84
Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWLKTRQVCPLDNREW+FQKYGH
Sbjct: 85 ------SRWLKTRQVCPLDNREWDFQKYGH 108
>sp|Q8QG64|RBX1_SALSA RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2
Length = 108
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 101/152 (66%), Gaps = 46/152 (30%)
Query: 2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
+AM+VDT P+++ + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3 AAMDVDT------PSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56
Query: 62 QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
QANQAS TSEECTVAWGVCNHAFHFHCI
Sbjct: 57 QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 84
Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 85 --------SRWLKTRQVCPLDNREWEFQKYGH 108
>sp|P62878|RBX1_MOUSE E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1
Length = 108
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 100/152 (65%), Gaps = 46/152 (30%)
Query: 2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
+AM+VDT P+ + + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56
Query: 62 QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
QANQAS TSEECTVAWGVCNHAFHFHCI
Sbjct: 57 QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 84
Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 85 --------SRWLKTRQVCPLDNREWEFQKYGH 108
>sp|P62877|RBX1_HUMAN E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1
Length = 108
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 100/152 (65%), Gaps = 46/152 (30%)
Query: 2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
+AM+VDT P+ + + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56
Query: 62 QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
QANQAS TSEECTVAWGVCNHAFHFHCI
Sbjct: 57 QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 84
Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 85 --------SRWLKTRQVCPLDNREWEFQKYGH 108
>sp|Q54K33|RBX1_DICDI RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1
Length = 104
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 92/138 (66%), Gaps = 40/138 (28%)
Query: 16 TSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTV 75
+SS +K KK+F+VK+WNAVALW WDIVVDNCAICRNHIMDLCIECQANQAS TSEECTV
Sbjct: 7 SSSASKTPKKKFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEECTV 66
Query: 76 AWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT 135
AWG+CNHAFHFHC ISRWLK+
Sbjct: 67 AWGICNHAFHFHC----------------------------------------ISRWLKS 86
Query: 136 RQVCPLDNREWEFQKYGH 153
RQVCPLDNR+WEFQKYG
Sbjct: 87 RQVCPLDNRDWEFQKYGR 104
>sp|Q940X7|RBX1A_ARATH RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1
Length = 118
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 88/131 (67%), Gaps = 40/131 (30%)
Query: 23 EKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNH 82
+ KRF++KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQAS TSEECTVAWGVCNH
Sbjct: 28 KAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 87
Query: 83 AFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 142
AFHFHCI SRWLKTRQVCPLD
Sbjct: 88 AFHFHCI----------------------------------------SRWLKTRQVCPLD 107
Query: 143 NREWEFQKYGH 153
N EWEFQKYGH
Sbjct: 108 NSEWEFQKYGH 118
>sp|Q23457|RBX1_CAEEL RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1
Length = 110
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 93/153 (60%), Gaps = 43/153 (28%)
Query: 1 MSAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIE 60
M+ T VE T+ T K KRF+VKKW+AVALWAWDI VDNCAICRNHIMDLCIE
Sbjct: 1 MAQASDSTAMEVEEATNQTVK---KRFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIE 57
Query: 61 CQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVC 120
CQANQA+ +ECTVAWG CNHAFHFHCI
Sbjct: 58 CQANQAAGLKDECTVAWGNCNHAFHFHCI------------------------------- 86
Query: 121 NHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 87 ---------SRWLKTRQVCPLDNREWEFQKYGH 110
>sp|Q9M2B0|RBX1B_ARATH RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1
Length = 115
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 85/129 (65%), Gaps = 40/129 (31%)
Query: 25 KRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAF 84
KRF++KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQAS TSEECTVAWGVCNHAF
Sbjct: 27 KRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAF 86
Query: 85 HFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 144
HFHCI SRWLKTRQVCPLD
Sbjct: 87 HFHCI----------------------------------------SRWLKTRQVCPLDVC 106
Query: 145 EWEFQKYGH 153
EWEFQKYGH
Sbjct: 107 EWEFQKYGH 115
>sp|O13959|RBX1_SCHPO RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pip1 PE=1 SV=2
Length = 107
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 91/150 (60%), Gaps = 47/150 (31%)
Query: 4 MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
M++D +E VE+ + + RF++KKWNAVALW WDIVVDNCAICRNHIMDLCIECQA
Sbjct: 5 MQIDKKE-VEI------EQKPPRFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQA 57
Query: 64 NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
N S ++ECTVAWG CNHAFHFHCI
Sbjct: 58 NTDSAAAQECTVAWGTCNHAFHFHCI---------------------------------- 83
Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
SRWL TR VCPLDNREWEFQ+YGH
Sbjct: 84 ------SRWLNTRNVCPLDNREWEFQRYGH 107
>sp|Q9NHX0|RBX1B_DROME RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=2 SV=2
Length = 122
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 83/148 (56%), Gaps = 43/148 (29%)
Query: 7 DTEENVELPTSS--TTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN 64
D + N E P+ S + +RF VKKW A A+W WD+ VDNCAICRNHIM+LCIECQA+
Sbjct: 15 DMDFNDEEPSCSGGAVQARTERFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQAD 74
Query: 65 QASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAF 124
+ +ECTVAWG CNHAFH+HC
Sbjct: 75 -PNANQDECTVAWGECNHAFHYHC------------------------------------ 97
Query: 125 HFHCISRWLKTRQVCPLDNREWEFQKYG 152
I+RWLKTR VCPLDN+EW +QKYG
Sbjct: 98 ----IARWLKTRLVCPLDNKEWVYQKYG 121
>sp|Q08273|RBX1_YEAST RING-box protein HRT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HRT1 PE=1 SV=1
Length = 121
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 80/154 (51%), Gaps = 44/154 (28%)
Query: 4 MEVDTEENVELPTSSTTKG----EKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCI 59
M+VD +E+ + SS +KKRF++KKW AVA W+WDI VDNCAICRNHIM+ CI
Sbjct: 8 MDVDEDESQNIAQSSNQSAPVETKKKRFEIKKWTAVAFWSWDIAVDNCAICRNHIMEPCI 67
Query: 60 ECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGV 119
ECQ + T EC AWGVCNHAFH HC
Sbjct: 68 ECQPKAMTDTDNECVAAWGVCNHAFHLHC------------------------------- 96
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
I++W+KTR CPLDN+ W+ + G
Sbjct: 97 ---------INKWIKTRDACPLDNQPWQLARCGR 121
>sp|Q9UBF6|RBX2_HUMAN RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1
Length = 113
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 25 KRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAF 84
K F +KKWNAVA+W+WD+ D CAICR +MD C+ C QA E+C V WG CNH+F
Sbjct: 28 KMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRC---QAENKQEDCVVVWGECNHSF 84
Query: 85 HFHCIS 90
H C+S
Sbjct: 85 HNCCMS 90
>sp|Q9WTZ1|RBX2_MOUSE RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1
Length = 113
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 25 KRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAF 84
K F +KKWNAVA+W+WD+ D CAICR +MD C+ C QA E+C V WG CNH+F
Sbjct: 28 KMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRC---QAENKQEDCVVVWGECNHSF 84
Query: 85 HFHCIS 90
H C+S
Sbjct: 85 HNCCMS 90
>sp|Q9M9L0|APC11_ARATH Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana
GN=APC11 PE=1 SV=2
Length = 84
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 85
+ + +W+AVA W WD + C ICR C +C+ ++C + WG CNHAFH
Sbjct: 2 KVKILRWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNHAFH 56
Query: 86 FHCISR 91
HCI +
Sbjct: 57 LHCILK 62
>sp|Q5UQ40|UBC4_MIMIV Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R795 PE=3 SV=1
Length = 1297
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 18/107 (16%)
Query: 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQ 102
++ + C H+++L ++ +T + C I R + CIE +
Sbjct: 44 IIQSVCSCDKHVVELTMDVFKLVDTTENSSCA--------------ICRYQENEPCIEHK 89
Query: 103 ANQASTTSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 148
+++++T +C +A V C+H+FH CISRWL T++ CPL N EW+
Sbjct: 90 SSESNT---KCPIAQSVSCSHSFHACCISRWLHTKKTCPLCNIEWQL 133
>sp|Q3ZCF6|APC11_BOVIN Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3
SV=1
Length = 84
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 85
R +K WN VA W W +NC ICR C +C+
Sbjct: 2 RVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK----------------------- 38
Query: 86 FHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLD 142
++C + WG C+H FH HCI +WL +QV CP+
Sbjct: 39 ----------------------VPGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMC 76
Query: 143 NREWEFQK 150
+EW+F++
Sbjct: 77 RQEWKFKE 84
>sp|Q9CPX9|APC11_MOUSE Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11
PE=3 SV=1
Length = 84
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 85
+ +K WN VA W W +NC ICR C +C+
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK----------------------- 38
Query: 86 FHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLD 142
++C + WG C+H FH HCI +WL +QV CP+
Sbjct: 39 ----------------------VPGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMC 76
Query: 143 NREWEFQK 150
+EW+F++
Sbjct: 77 RQEWKFKE 84
>sp|Q54L48|APC11_DICDI Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum
GN=anapc11 PE=3 SV=1
Length = 87
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 47/120 (39%)
Query: 32 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91
WN V+ W WD+ + C ICR C++C+
Sbjct: 9 WNTVSAWHWDVNEECCGICRMAFDGCCVDCK----------------------------- 39
Query: 92 NHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQV--CPLDNREWEFQ 149
++C WGVCNHAFH HCI +WL ++ CP+ EW F+
Sbjct: 40 ----------------IPGDDCPPVWGVCNHAFHMHCILKWLNANELQQCPMCRSEWRFK 83
>sp|Q5R8A2|APC11_PONAB Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11
PE=3 SV=1
Length = 84
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 85
+ +K WN VA W W +NC ICR C +C+
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK----------------------- 38
Query: 86 FHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLD 142
++C + WG C+H FH HCI +WL +QV CP+
Sbjct: 39 ----------------------VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMC 76
Query: 143 NREWEFQK 150
+EW+F++
Sbjct: 77 RQEWKFKE 84
>sp|Q9NYG5|APC11_HUMAN Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11
PE=1 SV=1
Length = 84
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 85
+ +K WN VA W W +NC ICR C +C+
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK----------------------- 38
Query: 86 FHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLD 142
++C + WG C+H FH HCI +WL +QV CP+
Sbjct: 39 ----------------------VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMC 76
Query: 143 NREWEFQK 150
+EW+F++
Sbjct: 77 RQEWKFKE 84
>sp|Q9UT86|APC11_SCHPO Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apc11 PE=1 SV=1
Length = 94
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 26 RFDVKKWNAVALWAWDIVVDN-CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAF 84
+ + +++A+A W WD D+ C ICR C +C ++ + C + WG C H F
Sbjct: 2 KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIF 56
Query: 85 HFHCI 89
H HCI
Sbjct: 57 HAHCI 61
>sp|Q12157|APC11_YEAST Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC11 PE=1 SV=1
Length = 165
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 89 ISRNHIMDLCIECQANQAST------TSEECTVAWGVCNHAFHFHCISRWLKT---RQVC 139
I + D+C C+A+ T ++C + G+C+H FH HCI RWL T + +C
Sbjct: 32 IGNDEDEDVCGICRASYNGTCPSCKFPGDQCPLVIGLCHHNFHDHCIYRWLDTPTSKGLC 91
Query: 140 PLDNREWEFQK 150
P+ + ++ QK
Sbjct: 92 PMCRQTFQLQK 102
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNR 144
C+H +H HCI RWL CP+ R
Sbjct: 721 CSHEYHIHCIDRWLSENSTCPICRR 745
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNR 144
C H HFHC+ WL+ +Q CP+ R
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNR 144
C+H +H HCI RWL CP+ R
Sbjct: 586 CSHEYHIHCIDRWLSENSTCPICRR 610
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNR 144
C+H +H HCI RWL CP+ R
Sbjct: 603 CSHEYHVHCIDRWLSENSTCPICRR 627
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNR 144
C+H +H HCI RWL CP+ R
Sbjct: 588 CSHEYHVHCIDRWLSENSTCPICRR 612
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNR 144
C+H +H HCI RWL CP+ R
Sbjct: 564 CSHEYHVHCIDRWLSENSTCPICRR 588
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNH FH C+ +WLK + CP+
Sbjct: 481 CNHEFHAKCVDKWLKANRTCPI 502
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 119 VCNHAFHFHCISRWLKTRQVCPL 141
VC+HAFH HCI WL + CPL
Sbjct: 225 VCSHAFHLHCIDTWLLSNSTCPL 247
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNH FH C+ +WLK + CP+
Sbjct: 484 CNHEFHAKCVDKWLKGNRTCPI 505
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNR 144
C H FH HCI RWL CP+ R
Sbjct: 632 CLHEFHIHCIDRWLSENCTCPVCRR 656
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNHAFH CI WLK+ CPL
Sbjct: 161 CNHAFHLPCIDTWLKSHSNCPL 182
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C H FH HCI RWL CP+
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPI 671
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 120 CNHAFHFHCISRWLKTRQVCP 140
C+H FH HC+ W + +Q CP
Sbjct: 310 CSHVFHAHCLRSWFQRQQTCP 330
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 120 CNHAFHFHCISRWLKTRQVCP 140
C+H FH HC+ W + +Q CP
Sbjct: 310 CSHVFHAHCLRSWFQRQQTCP 330
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNHAFH CI WLK+ CPL
Sbjct: 178 CNHAFHVPCIDTWLKSHSNCPL 199
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNH FH CI RWLK+ CPL
Sbjct: 174 CNHTFHVVCIDRWLKSHSNCPL 195
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDN 143
C HAFH C+ +WL+ R+VCPL N
Sbjct: 96 CKHAFHRKCLVKWLEVRKVCPLCN 119
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDN 143
C HAFH C+ +WL+ R+VCPL N
Sbjct: 96 CKHAFHRKCLIKWLEVRKVCPLCN 119
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNH FH CI +WLK R CPL
Sbjct: 325 CNHHFHSTCIVKWLKMRATCPL 346
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 141
I D+C C TTS T CNH FH C+ +WL + CP+
Sbjct: 543 INDVCAICY--HEFTTSARITP----CNHYFHALCLRKWLYIQDTCPM 584
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 141
I D+C C TTS T CNH FH C+ +WL + CP+
Sbjct: 543 INDVCAICY--HEFTTSARITP----CNHYFHALCLRKWLYIQDTCPM 584
>sp|O43085|DSC1_SCHPO DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2
Length = 695
Score = 35.8 bits (81), Expect = 0.095, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C+H +H C+ +W++TR +CP+
Sbjct: 666 CHHLYHRQCLLQWMETRSICPV 687
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C+HAFH CI WL + CPL
Sbjct: 153 CSHAFHMDCIDTWLLSHSTCPL 174
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 119 VCNHAFHFHCISRWLKTRQVCPL 141
+C+HAFH +CI WL++ CPL
Sbjct: 161 MCSHAFHLNCIDTWLQSNSTCPL 183
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C H++H CI+ WLK +VCP+
Sbjct: 306 CKHSYHSECINNWLKINKVCPV 327
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 141
I D+C C TTS T CNH FH C+ +WL + CP+
Sbjct: 543 IDDVCAICY--HEFTTSARITP----CNHYFHALCLRKWLYIQDTCPM 584
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C HAFH C+ +WL+ R VCP+ N+
Sbjct: 111 CQHAFHRKCLVKWLEVRCVCPMCNKP 136
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 140
++CI C+ S CNH FH C+ W + +Q CP
Sbjct: 283 NVCIICREEMVSGAKRL------PCNHIFHTSCLRSWFQRQQTCP 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.130 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,647,667
Number of Sequences: 539616
Number of extensions: 1962560
Number of successful extensions: 6157
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 5621
Number of HSP's gapped (non-prelim): 570
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)