Query psy16471
Match_columns 153
No_of_seqs 148 out of 1742
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 22:11:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2930|consensus 100.0 9.6E-39 2.1E-43 230.7 6.1 95 18-153 20-114 (114)
2 COG5194 APC11 Component of SCF 100.0 2.6E-33 5.7E-38 194.2 6.6 87 25-153 1-87 (88)
3 PF12861 zf-Apc11: Anaphase-pr 100.0 6.3E-29 1.4E-33 174.7 6.4 81 25-150 1-85 (85)
4 PF12678 zf-rbx1: RING-H2 zinc 99.9 2.7E-26 5.9E-31 157.2 7.1 73 26-143 1-73 (73)
5 KOG1493|consensus 99.9 1E-26 2.2E-31 160.1 3.0 80 26-150 2-84 (84)
6 KOG2930|consensus 99.7 2.7E-18 5.8E-23 124.5 -0.5 78 16-105 24-107 (114)
7 COG5194 APC11 Component of SCF 99.6 6.1E-16 1.3E-20 107.6 0.6 75 20-107 2-82 (88)
8 PF12861 zf-Apc11: Anaphase-pr 99.5 5.6E-15 1.2E-19 104.1 2.9 70 21-106 3-82 (85)
9 PF13639 zf-RING_2: Ring finge 99.5 1.6E-14 3.5E-19 89.2 1.8 44 96-143 1-44 (44)
10 KOG1493|consensus 99.3 6.7E-13 1.4E-17 91.8 0.7 69 21-105 3-80 (84)
11 PF12678 zf-rbx1: RING-H2 zinc 99.2 9E-12 2E-16 85.2 1.3 66 21-102 2-73 (73)
12 PHA02929 N1R/p28-like protein; 99.0 1.5E-10 3.1E-15 95.5 3.5 53 95-147 174-227 (238)
13 KOG4628|consensus 99.0 2.1E-10 4.5E-15 98.8 2.5 46 96-145 230-276 (348)
14 cd00162 RING RING-finger (Real 98.9 9.6E-10 2.1E-14 65.6 3.3 44 97-146 1-45 (45)
15 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.1E-09 2.4E-14 65.9 3.2 39 98-142 1-39 (39)
16 COG5243 HRD1 HRD ubiquitin lig 98.8 2.5E-09 5.5E-14 92.9 2.8 54 94-147 286-345 (491)
17 PF13920 zf-C3HC4_3: Zinc fing 98.7 1.6E-08 3.6E-13 63.8 3.2 44 96-146 3-47 (50)
18 PF00097 zf-C3HC4: Zinc finger 98.6 3.2E-08 6.9E-13 59.6 3.3 39 98-142 1-41 (41)
19 PHA02926 zinc finger-like prot 98.6 2.1E-08 4.6E-13 82.0 3.0 58 94-151 169-234 (242)
20 smart00184 RING Ring finger. E 98.6 3.2E-08 6.8E-13 56.9 2.8 38 98-142 1-39 (39)
21 COG5540 RING-finger-containing 98.6 2.9E-08 6.3E-13 84.4 3.2 46 97-146 325-371 (374)
22 KOG0802|consensus 98.6 2E-08 4.3E-13 90.8 1.6 50 94-145 290-339 (543)
23 PF14634 zf-RING_5: zinc-RING 98.5 6.9E-08 1.5E-12 59.6 3.0 44 97-144 1-44 (44)
24 PF13639 zf-RING_2: Ring finge 98.5 9.4E-09 2E-13 63.2 -1.0 43 45-102 1-44 (44)
25 PLN03208 E3 ubiquitin-protein 98.4 1.5E-07 3.2E-12 75.5 3.3 48 95-149 18-81 (193)
26 KOG0317|consensus 98.4 9.8E-08 2.1E-12 80.3 2.4 51 94-151 238-288 (293)
27 KOG0320|consensus 98.4 8.8E-08 1.9E-12 75.9 2.0 52 94-150 130-181 (187)
28 smart00504 Ubox Modified RING 98.4 3.3E-07 7.1E-12 59.5 4.0 45 97-148 3-47 (63)
29 PF15227 zf-C3HC4_4: zinc fing 98.4 3.6E-07 7.7E-12 56.3 3.0 38 98-142 1-42 (42)
30 KOG4628|consensus 98.1 8E-07 1.7E-11 76.9 1.3 50 45-109 230-281 (348)
31 TIGR00599 rad18 DNA repair pro 98.1 2.6E-06 5.7E-11 74.9 3.2 49 94-149 25-73 (397)
32 KOG1734|consensus 98.0 1E-06 2.2E-11 74.0 0.1 61 91-151 220-285 (328)
33 KOG0827|consensus 98.0 2.3E-06 4.9E-11 74.9 1.8 47 94-143 3-52 (465)
34 KOG0823|consensus 98.0 4.4E-06 9.5E-11 68.5 2.9 48 96-150 48-98 (230)
35 PF13445 zf-RING_UBOX: RING-ty 97.9 7.1E-06 1.5E-10 50.9 2.7 35 98-136 1-35 (43)
36 smart00744 RINGv The RING-vari 97.9 1.2E-05 2.5E-10 51.1 2.7 41 98-143 2-49 (49)
37 PF11793 FANCL_C: FANCL C-term 97.9 2.4E-06 5.2E-11 58.0 -0.5 51 96-148 3-67 (70)
38 KOG0828|consensus 97.8 5.8E-06 1.3E-10 74.3 0.8 50 96-145 572-632 (636)
39 PHA02929 N1R/p28-like protein; 97.7 1.3E-05 2.8E-10 66.3 1.1 54 43-106 173-227 (238)
40 COG5219 Uncharacterized conser 97.6 1.6E-05 3.5E-10 76.0 0.6 31 118-148 1492-1524(1525)
41 COG5432 RAD18 RING-finger-cont 97.6 3.1E-05 6.7E-10 66.0 1.8 35 114-148 37-71 (391)
42 KOG2164|consensus 97.6 3.9E-05 8.5E-10 69.0 2.2 47 95-148 186-237 (513)
43 KOG0804|consensus 97.5 4.9E-05 1.1E-09 67.6 2.0 46 94-144 174-219 (493)
44 COG5574 PEX10 RING-finger-cont 97.5 4.9E-05 1.1E-09 63.6 1.6 50 95-151 215-266 (271)
45 TIGR00570 cdk7 CDK-activating 97.4 0.00013 2.9E-09 62.3 3.4 53 96-150 4-57 (309)
46 KOG0287|consensus 97.4 5.5E-05 1.2E-09 65.6 1.1 34 114-147 35-68 (442)
47 cd00162 RING RING-finger (Real 97.3 4.8E-05 1E-09 44.8 0.1 42 46-104 1-44 (45)
48 PF04564 U-box: U-box domain; 97.3 0.00031 6.8E-09 47.6 3.6 45 97-148 6-51 (73)
49 KOG0825|consensus 97.3 5E-05 1.1E-09 71.6 -0.8 50 94-147 122-171 (1134)
50 KOG3970|consensus 97.2 0.00015 3.2E-09 60.0 1.6 59 83-146 30-104 (299)
51 PF13923 zf-C3HC4_2: Zinc fing 97.1 0.00013 2.7E-09 43.6 0.4 38 47-101 1-39 (39)
52 COG5540 RING-finger-containing 97.1 0.00012 2.6E-09 62.7 -0.1 46 45-105 324-371 (374)
53 PHA02926 zinc finger-like prot 97.0 0.00017 3.6E-09 59.4 0.1 53 44-106 170-230 (242)
54 KOG0978|consensus 97.0 0.00021 4.5E-09 66.8 0.2 48 94-148 642-690 (698)
55 PF14835 zf-RING_6: zf-RING of 96.9 0.00024 5.1E-09 47.8 -0.0 42 97-146 9-50 (65)
56 PF13920 zf-C3HC4_3: Zinc fing 96.9 0.00035 7.5E-09 43.8 0.6 45 44-106 2-48 (50)
57 KOG2177|consensus 96.8 0.00045 9.8E-09 54.2 1.2 42 95-143 13-54 (386)
58 KOG1645|consensus 96.7 0.0011 2.3E-08 58.7 3.0 48 96-145 5-54 (463)
59 COG5243 HRD1 HRD ubiquitin lig 96.7 0.00051 1.1E-08 60.3 0.8 57 44-105 287-344 (491)
60 PF11789 zf-Nse: Zinc-finger o 96.6 0.0019 4.1E-08 42.2 2.5 42 94-141 10-53 (57)
61 PF10367 Vps39_2: Vacuolar sor 96.5 0.0012 2.7E-08 46.4 1.4 33 94-131 77-109 (109)
62 KOG1039|consensus 96.5 0.0014 3E-08 56.9 1.8 54 95-148 161-222 (344)
63 KOG4445|consensus 96.3 0.0012 2.6E-08 56.6 0.4 55 92-150 112-189 (368)
64 KOG1941|consensus 96.2 0.0014 3.1E-08 57.9 0.3 45 97-144 367-413 (518)
65 PLN03208 E3 ubiquitin-protein 96.2 0.0012 2.5E-08 53.2 -0.4 45 45-107 19-80 (193)
66 KOG0827|consensus 95.9 0.0017 3.8E-08 57.2 -0.6 26 77-102 23-52 (465)
67 KOG0824|consensus 95.8 0.0037 8E-08 53.4 1.1 32 116-147 21-53 (324)
68 PF00097 zf-C3HC4: Zinc finger 95.6 0.0042 9.1E-08 36.9 0.6 38 47-101 1-41 (41)
69 KOG4172|consensus 95.6 0.0033 7.2E-08 41.3 0.0 32 116-147 21-54 (62)
70 KOG0802|consensus 95.5 0.0021 4.5E-08 58.5 -1.4 49 44-105 291-340 (543)
71 KOG0297|consensus 95.4 0.0071 1.5E-07 53.1 1.5 61 82-148 7-68 (391)
72 KOG0804|consensus 95.3 0.0096 2.1E-07 53.4 2.0 76 45-135 176-266 (493)
73 KOG0311|consensus 95.2 0.0023 5.1E-08 55.7 -2.0 44 96-145 44-88 (381)
74 KOG0309|consensus 95.2 0.011 2.3E-07 56.2 2.0 39 98-141 1031-1069(1081)
75 KOG2114|consensus 95.2 0.01 2.2E-07 56.6 1.8 41 96-145 841-881 (933)
76 KOG4265|consensus 95.1 0.015 3.2E-07 50.6 2.4 46 95-147 290-336 (349)
77 smart00184 RING Ring finger. E 95.1 0.0049 1.1E-07 34.6 -0.4 23 79-101 15-39 (39)
78 KOG0823|consensus 95.0 0.01 2.3E-07 48.9 1.1 46 44-107 47-96 (230)
79 KOG3268|consensus 94.8 0.024 5.2E-07 45.6 2.8 37 117-153 187-234 (234)
80 PHA02825 LAP/PHD finger-like p 94.8 0.029 6.4E-07 44.0 3.1 31 120-150 27-62 (162)
81 PHA02862 5L protein; Provision 94.7 0.02 4.3E-07 44.4 2.0 30 122-151 26-57 (156)
82 KOG4185|consensus 94.7 0.028 6E-07 46.8 2.9 53 95-148 3-56 (296)
83 KOG1734|consensus 94.5 0.0088 1.9E-07 50.7 -0.5 56 44-107 224-282 (328)
84 KOG2660|consensus 94.5 0.011 2.3E-07 51.1 0.0 29 116-144 30-58 (331)
85 KOG1940|consensus 94.5 0.021 4.5E-07 48.3 1.7 48 94-144 157-204 (276)
86 PF11793 FANCL_C: FANCL C-term 94.2 0.013 2.8E-07 39.6 -0.0 52 44-105 2-65 (70)
87 KOG0317|consensus 93.9 0.02 4.3E-07 48.7 0.5 47 44-108 239-286 (293)
88 KOG1952|consensus 93.9 0.029 6.4E-07 53.7 1.6 45 98-145 194-245 (950)
89 KOG1428|consensus 93.6 0.037 8E-07 56.1 1.9 50 94-147 3485-3544(3738)
90 PF15227 zf-C3HC4_4: zinc fing 93.6 0.025 5.4E-07 34.5 0.4 37 47-101 1-42 (42)
91 KOG1785|consensus 93.3 0.031 6.7E-07 49.8 0.7 47 94-147 368-416 (563)
92 PF08746 zf-RING-like: RING-li 93.2 0.1 2.2E-06 32.1 2.7 24 119-142 18-43 (43)
93 PF14634 zf-RING_5: zinc-RING 93.2 0.022 4.8E-07 34.7 -0.3 42 47-103 2-44 (44)
94 KOG1813|consensus 92.9 0.046 1E-06 46.7 1.2 48 91-145 237-284 (313)
95 smart00504 Ubox Modified RING 92.8 0.045 9.7E-07 35.0 0.8 44 46-107 3-47 (63)
96 PF12906 RINGv: RING-variant d 92.8 0.074 1.6E-06 33.2 1.8 21 122-142 25-47 (47)
97 COG5152 Uncharacterized conser 92.5 0.051 1.1E-06 44.4 0.9 45 94-145 195-239 (259)
98 TIGR00599 rad18 DNA repair pro 92.5 0.037 8E-07 49.0 0.0 43 45-105 27-70 (397)
99 KOG0825|consensus 92.1 0.019 4.1E-07 54.8 -2.3 27 79-105 143-170 (1134)
100 KOG3039|consensus 90.7 0.29 6.3E-06 41.2 3.6 51 94-147 220-270 (303)
101 KOG2879|consensus 90.7 0.26 5.6E-06 41.9 3.3 48 94-147 238-287 (298)
102 KOG0320|consensus 90.1 0.062 1.4E-06 42.9 -0.8 46 44-105 131-177 (187)
103 PF14835 zf-RING_6: zf-RING of 89.8 0.17 3.6E-06 34.2 1.1 44 46-107 9-52 (65)
104 PF04641 Rtf2: Rtf2 RING-finge 89.7 0.43 9.4E-06 39.5 3.8 51 94-148 112-162 (260)
105 KOG4159|consensus 89.4 0.22 4.7E-06 44.2 1.9 44 97-147 86-129 (398)
106 PHA03096 p28-like protein; Pro 88.9 0.22 4.7E-06 42.3 1.5 49 96-144 179-231 (284)
107 PF10367 Vps39_2: Vacuolar sor 88.6 0.3 6.5E-06 34.1 1.8 32 44-91 78-109 (109)
108 COG5236 Uncharacterized conser 88.6 0.38 8.2E-06 42.4 2.8 46 95-147 61-108 (493)
109 KOG2034|consensus 88.3 0.22 4.7E-06 48.0 1.2 36 94-134 816-851 (911)
110 KOG1002|consensus 87.2 0.19 4.2E-06 46.4 0.2 45 94-145 535-584 (791)
111 KOG2164|consensus 87.1 0.25 5.5E-06 45.0 0.9 46 44-107 186-237 (513)
112 KOG4739|consensus 87.0 0.22 4.7E-06 41.3 0.4 37 114-152 17-53 (233)
113 PF10571 UPF0547: Uncharacteri 86.9 0.25 5.3E-06 27.4 0.4 23 97-124 2-24 (26)
114 KOG0828|consensus 86.9 0.12 2.7E-06 47.1 -1.2 58 45-105 572-633 (636)
115 PF14570 zf-RING_4: RING/Ubox 86.7 0.45 9.7E-06 30.2 1.6 47 98-147 1-48 (48)
116 TIGR00570 cdk7 CDK-activating 86.0 0.37 7.9E-06 41.5 1.2 51 44-107 3-55 (309)
117 PF05883 Baculo_RING: Baculovi 84.8 0.6 1.3E-05 35.7 1.7 44 90-137 20-70 (134)
118 PF13901 DUF4206: Domain of un 83.4 0.62 1.4E-05 37.3 1.4 26 114-144 172-197 (202)
119 KOG2114|consensus 83.4 0.36 7.9E-06 46.5 0.1 43 44-105 840-882 (933)
120 KOG1571|consensus 82.7 0.58 1.3E-05 41.0 1.0 42 94-145 304-345 (355)
121 PF14447 Prok-RING_4: Prokaryo 82.5 0.65 1.4E-05 30.3 1.0 36 114-151 19-54 (55)
122 KOG2817|consensus 81.5 1.4 3E-05 39.1 3.0 50 93-146 332-384 (394)
123 KOG1428|consensus 80.9 0.45 9.8E-06 48.9 -0.3 27 79-105 3506-3543(3738)
124 KOG0826|consensus 79.5 1.2 2.6E-05 38.8 1.9 51 94-150 299-349 (357)
125 PF10272 Tmpp129: Putative tra 79.1 1.1 2.3E-05 39.4 1.5 26 122-147 313-351 (358)
126 smart00249 PHD PHD zinc finger 78.6 1.3 2.9E-05 25.6 1.4 31 98-132 2-32 (47)
127 PF04710 Pellino: Pellino; In 78.1 0.69 1.5E-05 41.1 0.0 49 94-145 276-337 (416)
128 PF14446 Prok-RING_1: Prokaryo 77.8 2.2 4.8E-05 27.7 2.3 46 94-147 4-52 (54)
129 KOG4692|consensus 76.5 1.5 3.3E-05 38.9 1.6 45 94-145 421-465 (489)
130 COG5574 PEX10 RING-finger-cont 76.1 0.68 1.5E-05 39.1 -0.6 46 44-107 215-263 (271)
131 PF07800 DUF1644: Protein of u 74.6 3.7 8.1E-05 32.3 3.2 32 96-134 3-47 (162)
132 KOG0824|consensus 74.1 1.8 3.8E-05 37.4 1.4 86 44-147 7-151 (324)
133 PF00628 PHD: PHD-finger; Int 73.7 2 4.3E-05 26.3 1.2 32 98-133 2-33 (51)
134 PF13717 zinc_ribbon_4: zinc-r 73.4 2.1 4.5E-05 25.2 1.2 29 97-125 4-36 (36)
135 KOG4718|consensus 73.3 1.9 4.1E-05 35.5 1.4 47 95-147 181-227 (235)
136 KOG1813|consensus 73.1 1.9 4.2E-05 37.0 1.4 45 45-107 242-287 (313)
137 COG5432 RAD18 RING-finger-cont 72.1 1 2.2E-05 39.0 -0.5 44 44-105 25-69 (391)
138 PF13719 zinc_ribbon_5: zinc-r 71.8 2.2 4.7E-05 25.2 1.1 29 97-125 4-36 (37)
139 KOG2066|consensus 71.6 1.9 4E-05 41.5 1.1 48 94-142 783-830 (846)
140 COG5219 Uncharacterized conser 71.6 1 2.3E-05 44.4 -0.6 51 44-105 1469-1522(1525)
141 KOG1645|consensus 69.9 1.3 2.7E-05 39.8 -0.4 49 44-105 4-55 (463)
142 KOG1814|consensus 68.4 3.1 6.7E-05 37.3 1.7 46 94-143 183-236 (445)
143 COG5183 SSM4 Protein involved 68.3 3.1 6.7E-05 40.5 1.8 52 95-151 12-70 (1175)
144 KOG1001|consensus 67.9 2.4 5.2E-05 40.1 1.0 43 96-146 455-499 (674)
145 PF02891 zf-MIZ: MIZ/SP-RING z 67.6 7 0.00015 24.5 2.8 42 97-145 4-50 (50)
146 KOG1812|consensus 67.0 3.9 8.5E-05 36.0 2.1 49 95-145 306-354 (384)
147 KOG1829|consensus 66.9 1.5 3.4E-05 40.7 -0.5 35 114-151 531-565 (580)
148 KOG3899|consensus 66.5 3 6.5E-05 36.1 1.2 29 120-148 325-366 (381)
149 COG5222 Uncharacterized conser 63.1 4.1 9E-05 35.4 1.4 42 97-144 276-318 (427)
150 KOG3800|consensus 62.8 8.3 0.00018 33.1 3.2 47 97-145 2-49 (300)
151 COG5152 Uncharacterized conser 62.3 1.6 3.4E-05 35.9 -1.2 44 46-107 198-242 (259)
152 KOG0801|consensus 60.9 6.1 0.00013 31.5 1.9 69 37-126 131-204 (205)
153 KOG3053|consensus 60.5 3.3 7.2E-05 35.1 0.4 27 121-147 48-82 (293)
154 smart00647 IBR In Between Ring 59.3 3.4 7.3E-05 26.0 0.2 37 96-132 19-58 (64)
155 KOG4275|consensus 57.1 2.3 5E-05 36.7 -1.1 41 95-146 300-341 (350)
156 KOG0311|consensus 56.0 0.91 2E-05 39.9 -3.8 44 45-105 44-89 (381)
157 KOG3842|consensus 55.4 6.8 0.00015 34.4 1.5 71 72-145 259-350 (429)
158 KOG0269|consensus 55.1 9.8 0.00021 36.7 2.6 24 118-141 797-820 (839)
159 PHA02862 5L protein; Provision 54.6 3.6 7.8E-05 32.1 -0.3 45 44-105 2-52 (156)
160 KOG2932|consensus 54.0 6.1 0.00013 34.5 0.9 28 116-145 105-132 (389)
161 PF07191 zinc-ribbons_6: zinc- 53.6 7.7 0.00017 26.5 1.2 33 87-128 22-56 (70)
162 TIGR00686 phnA alkylphosphonat 53.2 7.7 0.00017 28.7 1.2 26 96-123 3-28 (109)
163 PF03854 zf-P11: P-11 zinc fin 53.1 6.9 0.00015 25.0 0.8 28 118-145 16-44 (50)
164 PRK10220 hypothetical protein; 51.0 11 0.00023 28.0 1.7 17 95-111 3-19 (111)
165 KOG0287|consensus 49.1 4 8.6E-05 36.1 -0.9 44 46-107 25-69 (442)
166 PF14569 zf-UDP: Zinc-binding 48.6 18 0.00039 25.3 2.4 56 94-149 8-64 (80)
167 COG5220 TFB3 Cdk activating ki 47.9 13 0.00027 31.5 1.9 48 95-143 10-60 (314)
168 KOG1701|consensus 47.6 16 0.00034 33.1 2.5 36 94-129 393-428 (468)
169 PF13771 zf-HC5HC2H: PHD-like 47.2 6.3 0.00014 26.8 -0.0 36 42-92 34-69 (90)
170 PF00412 LIM: LIM domain; Int 45.5 12 0.00026 23.0 1.1 37 98-147 1-37 (58)
171 PRK05978 hypothetical protein; 45.4 14 0.0003 28.6 1.6 19 131-149 47-65 (148)
172 PF04710 Pellino: Pellino; In 45.1 7.1 0.00015 34.9 0.0 75 73-147 302-401 (416)
173 PF06844 DUF1244: Protein of u 44.9 12 0.00027 25.3 1.1 13 123-135 11-23 (68)
174 KOG1940|consensus 44.7 6.8 0.00015 33.3 -0.2 27 77-103 177-204 (276)
175 PF04216 FdhE: Protein involve 43.6 6.6 0.00014 32.9 -0.4 45 95-145 172-220 (290)
176 COG5175 MOT2 Transcriptional r 43.4 13 0.00028 33.0 1.4 13 44-56 14-26 (480)
177 PF13832 zf-HC5HC2H_2: PHD-zin 43.4 13 0.00029 26.2 1.2 12 120-131 76-87 (110)
178 KOG3002|consensus 43.4 13 0.00028 31.9 1.3 40 96-146 49-90 (299)
179 KOG0298|consensus 42.8 7.5 0.00016 39.5 -0.2 45 95-145 1153-1197(1394)
180 smart00132 LIM Zinc-binding do 41.9 17 0.00037 20.0 1.3 35 98-145 2-36 (39)
181 KOG4577|consensus 41.8 4.3 9.3E-05 35.1 -1.8 31 95-130 92-122 (383)
182 cd00350 rubredoxin_like Rubred 41.5 16 0.00035 20.8 1.1 21 119-145 6-26 (33)
183 PF09538 FYDLN_acid: Protein o 40.5 16 0.00035 26.7 1.3 32 92-125 6-37 (108)
184 KOG0978|consensus 39.5 8.2 0.00018 36.8 -0.5 30 79-108 660-691 (698)
185 KOG0297|consensus 39.3 18 0.00039 31.8 1.6 44 45-105 22-66 (391)
186 COG3809 Uncharacterized protei 39.0 17 0.00036 25.6 1.1 10 138-147 23-32 (88)
187 PF04423 Rad50_zn_hook: Rad50 38.9 9.9 0.00021 23.9 -0.1 11 137-147 21-31 (54)
188 KOG1100|consensus 38.5 19 0.0004 29.2 1.5 28 114-145 170-198 (207)
189 PF06906 DUF1272: Protein of u 38.3 50 0.0011 21.7 3.2 48 95-147 5-52 (57)
190 PF14169 YdjO: Cold-inducible 35.5 20 0.00044 23.6 1.0 12 136-147 39-50 (59)
191 TIGR02367 PylS pyrrolysyl-tRNA 33.6 15 0.00033 33.3 0.2 23 129-151 55-81 (453)
192 PF07282 OrfB_Zn_ribbon: Putat 33.3 59 0.0013 20.9 3.1 44 85-129 18-61 (69)
193 KOG3113|consensus 32.9 53 0.0012 28.0 3.3 52 94-150 110-161 (293)
194 PF08274 PhnA_Zn_Ribbon: PhnA 32.8 18 0.00038 20.6 0.3 12 96-107 3-14 (30)
195 KOG1039|consensus 31.7 14 0.00031 32.3 -0.2 52 44-105 161-220 (344)
196 KOG2979|consensus 30.1 22 0.00049 30.0 0.7 43 95-143 176-220 (262)
197 KOG1941|consensus 30.0 8.3 0.00018 34.7 -2.0 27 79-105 386-415 (518)
198 KOG1785|consensus 29.9 17 0.00036 33.0 -0.1 67 24-108 349-418 (563)
199 KOG1609|consensus 29.7 28 0.0006 28.5 1.2 26 122-147 107-134 (323)
200 COG5109 Uncharacterized conser 28.1 50 0.0011 29.0 2.5 52 94-149 335-389 (396)
201 COG3357 Predicted transcriptio 27.8 24 0.00052 25.4 0.4 26 118-147 62-87 (97)
202 PF07975 C1_4: TFIIH C1-like d 27.0 42 0.00091 21.4 1.4 30 114-143 21-50 (51)
203 PF10071 DUF2310: Zn-ribbon-co 26.7 35 0.00076 28.8 1.3 16 136-151 220-235 (258)
204 TIGR02300 FYDLN_acid conserved 26.2 35 0.00077 25.9 1.1 33 92-126 6-38 (129)
205 KOG2879|consensus 25.5 40 0.00088 28.9 1.4 31 76-106 254-287 (298)
206 KOG1812|consensus 25.2 24 0.00052 31.1 0.0 40 94-136 145-184 (384)
207 PF01485 IBR: IBR domain; Int 24.7 8.4 0.00018 24.0 -2.2 37 96-132 19-58 (64)
208 PF09723 Zn-ribbon_8: Zinc rib 24.7 71 0.0015 19.0 2.1 24 79-103 10-34 (42)
209 PF15616 TerY-C: TerY-C metal 24.6 36 0.00078 25.9 0.9 43 94-149 76-118 (131)
210 KOG4021|consensus 24.1 47 0.001 27.3 1.5 26 126-151 97-123 (239)
211 KOG4159|consensus 23.8 23 0.00049 31.6 -0.4 29 79-107 101-130 (398)
212 PLN02189 cellulose synthase 23.6 91 0.002 31.3 3.6 57 94-150 33-90 (1040)
213 TIGR02098 MJ0042_CXXC MJ0042 f 23.2 48 0.001 18.9 1.1 9 97-105 4-12 (38)
214 PF13913 zf-C2HC_2: zinc-finge 22.8 18 0.00038 19.4 -0.8 12 138-149 4-15 (25)
215 TIGR00622 ssl1 transcription f 22.8 87 0.0019 23.2 2.6 50 95-144 55-111 (112)
216 KOG1512|consensus 22.7 33 0.00071 29.8 0.4 49 78-130 283-345 (381)
217 PLN02638 cellulose synthase A 22.3 97 0.0021 31.3 3.5 55 94-149 16-72 (1079)
218 PF07649 C1_3: C1-like domain; 21.8 62 0.0013 17.7 1.3 29 97-129 2-30 (30)
219 PF12660 zf-TFIIIC: Putative z 21.7 44 0.00096 23.8 0.9 80 44-147 14-99 (99)
220 KOG4362|consensus 20.9 26 0.00057 33.4 -0.6 45 94-145 20-67 (684)
221 KOG0956|consensus 20.6 43 0.00092 32.4 0.7 14 42-55 115-128 (900)
No 1
>KOG2930|consensus
Probab=100.00 E-value=9.6e-39 Score=230.75 Aligned_cols=95 Identities=88% Similarity=1.663 Sum_probs=85.7
Q ss_pred CCCccccceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCc
Q psy16471 18 STTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDL 97 (153)
Q Consensus 18 ~~~~~~~~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~ 97 (153)
++....+++|.||+|++||.|.||+..|+|+|||+.++|+||+||+++ ..++++|
T Consensus 20 ~s~~~~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~-~~~~~EC------------------------ 74 (114)
T KOG2930|consen 20 SSNEGGKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ-SATSEEC------------------------ 74 (114)
T ss_pred ccCCCCCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCC-CCCCCce------------------------
Confidence 334455999999999999999999999999999999999999999986 5666666
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~ 153 (153)
.+++|.|+|.||+|||.+||++++.||+|.++|.||+||+
T Consensus 75 ----------------~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~qr~g~ 114 (114)
T KOG2930|consen 75 ----------------TVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQRYGH 114 (114)
T ss_pred ----------------EEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEeecCC
Confidence 5666678899999999999999999999999999999996
No 2
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=100.00 E-value=2.6e-33 Score=194.19 Aligned_cols=87 Identities=60% Similarity=1.274 Sum_probs=78.8
Q ss_pred ceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCcccccccc
Q psy16471 25 KRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQAN 104 (153)
Q Consensus 25 ~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~ 104 (153)
++|+||+|++||.|+||.+.|+|+|||++++++|++|+.++ .|+
T Consensus 1 ~kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~--~~~---------------------------------- 44 (88)
T COG5194 1 MKVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGM--TPG---------------------------------- 44 (88)
T ss_pred CceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCC--CCC----------------------------------
Confidence 47899999999999999999999999999999999998853 334
Q ss_pred ccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471 105 QASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153 (153)
Q Consensus 105 ~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~ 153 (153)
++|++++|.|+|.||.|||.+||.+++.|||+|++|+||.+++
T Consensus 45 ------~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~~~~ 87 (88)
T COG5194 45 ------DECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLADGGA 87 (88)
T ss_pred ------CcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEecccC
Confidence 4557788889999999999999999999999999999999875
No 3
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.95 E-value=6.3e-29 Score=174.72 Aligned_cols=81 Identities=40% Similarity=1.114 Sum_probs=72.6
Q ss_pred ceEEEEEEEeEEeeeecc-cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccc
Q psy16471 25 KRFDVKKWNAVALWAWDI-VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQA 103 (153)
Q Consensus 25 ~~~~vk~w~~va~w~wd~-~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~ 103 (153)
++++|++|++||.|.||+ .+|+|+|||..|+..|+.|+.+
T Consensus 1 mkv~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~P--------------------------------------- 41 (85)
T PF12861_consen 1 MKVKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKFP--------------------------------------- 41 (85)
T ss_pred CeeEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccCC---------------------------------------
Confidence 368999999999999997 5799999999999999998774
Q ss_pred cccCCCCccceEEeeeecceechHHHHHHHcC---CCCCCCCCCCccccc
Q psy16471 104 NQASTTSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEFQK 150 (153)
Q Consensus 104 ~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~w~~~~ 150 (153)
+++|+++++.|+|.||.|||.+||++ +++|||||++|++++
T Consensus 42 ------gd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 42 ------GDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE 85 (85)
T ss_pred ------CCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence 56678899999999999999999997 478999999999975
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.93 E-value=2.7e-26 Score=157.18 Aligned_cols=73 Identities=63% Similarity=1.399 Sum_probs=65.7
Q ss_pred eEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccc
Q psy16471 26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQ 105 (153)
Q Consensus 26 ~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~ 105 (153)
+|+|++|++|+.|.||..+|.|+||+++|++.+++|++++
T Consensus 1 ~~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~---------------------------------------- 40 (73)
T PF12678_consen 1 KFKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQAPQ---------------------------------------- 40 (73)
T ss_dssp SEEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCT----------------------------------------
T ss_pred CeEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcCCc----------------------------------------
Confidence 5899999999999999999999999999999999998862
Q ss_pred cCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCC
Q psy16471 106 ASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143 (153)
Q Consensus 106 ~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr 143 (153)
+++.++++.|||.||.+||.+||+++.+||+||
T Consensus 41 -----~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 41 -----DECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp -----TTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred -----cccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 334888899999999999999999999999998
No 5
>KOG1493|consensus
Probab=99.93 E-value=1e-26 Score=160.15 Aligned_cols=80 Identities=39% Similarity=1.081 Sum_probs=72.8
Q ss_pred eEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccc
Q psy16471 26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQ 105 (153)
Q Consensus 26 ~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~ 105 (153)
.++|++|+.++.|.|+.+.++|.|||.+|+..|+.|+.+
T Consensus 2 kvki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~P----------------------------------------- 40 (84)
T KOG1493|consen 2 KVKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKLP----------------------------------------- 40 (84)
T ss_pred ceEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcCC-----------------------------------------
Confidence 578999999999999999999999999999999999875
Q ss_pred cCCCCccceEEeeeecceechHHHHHHHcC---CCCCCCCCCCccccc
Q psy16471 106 ASTTSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEFQK 150 (153)
Q Consensus 106 ~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~w~~~~ 150 (153)
+|+|+++++.|.|.||.|||.+|+.+ +.+|||||++|+|++
T Consensus 41 ----gDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~e 84 (84)
T KOG1493|consen 41 ----GDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFKE 84 (84)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEecC
Confidence 56667788889999999999999987 467999999999975
No 6
>KOG2930|consensus
Probab=99.68 E-value=2.7e-18 Score=124.52 Aligned_cols=78 Identities=32% Similarity=0.548 Sum_probs=71.9
Q ss_pred CCCCCccccceEEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecc
Q psy16471 16 TSSTTKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCIS 90 (153)
Q Consensus 16 ~~~~~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~ 90 (153)
++++.+.++||.+|+-|.|+ +++|++..+|.|..||.+...+..+|... ||+|||+||+|||+
T Consensus 24 ~~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~Va------------WG~CNHaFH~hCis 91 (114)
T KOG2930|consen 24 GGKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVA------------WGVCNHAFHFHCIS 91 (114)
T ss_pred CCCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEE------------eeecchHHHHHHHH
Confidence 34678899999999999996 78899999999999999987788899887 99999999999999
Q ss_pred ccc-ccCccccccccc
Q psy16471 91 RNH-IMDLCIECQANQ 105 (153)
Q Consensus 91 ~w~-~~~~CpiC~~~~ 105 (153)
+|+ .+..||.+.+++
T Consensus 92 rWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 92 RWLKTRNVCPLDNKEW 107 (114)
T ss_pred HHHhhcCcCCCcCcce
Confidence 998 999999999988
No 7
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.56 E-value=6.1e-16 Score=107.61 Aligned_cols=75 Identities=31% Similarity=0.516 Sum_probs=66.7
Q ss_pred CccccceEEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-
Q psy16471 20 TKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH- 93 (153)
Q Consensus 20 ~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~- 93 (153)
+++++++.+|+.|+|. ++++++..+|+|+.|+..+ ++..+| +++||.|||+||.|||.+|+
T Consensus 2 kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~-~~~~eC------------~v~wG~CnHaFH~HCI~rWL~ 68 (88)
T COG5194 2 KVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGM-TPGDEC------------PVVWGVCNHAFHDHCIYRWLD 68 (88)
T ss_pred ceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCC-CCCCcc------------eEEEEecchHHHHHHHHHHHh
Confidence 4688999999999995 8899999999999999976 555677 56899999999999999998
Q ss_pred ccCccccccccccC
Q psy16471 94 IMDLCIECQANQAS 107 (153)
Q Consensus 94 ~~~~CpiC~~~~~~ 107 (153)
+++.||.+++.+..
T Consensus 69 Tk~~CPld~q~w~~ 82 (88)
T COG5194 69 TKGVCPLDRQTWVL 82 (88)
T ss_pred hCCCCCCCCceeEE
Confidence 89999999999833
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.52 E-value=5.6e-15 Score=104.09 Aligned_cols=70 Identities=26% Similarity=0.476 Sum_probs=62.5
Q ss_pred ccccceEEEEEEEeE------EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-
Q psy16471 21 KGEKKRFDVKKWNAV------ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH- 93 (153)
Q Consensus 21 ~~~~~~~~vk~w~~v------a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~- 93 (153)
.+++++..|+.|.|. +.+++..++..|+.|+.+.++ |+++||.|+|.||+|||.+|+
T Consensus 3 v~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~----------------Cplv~g~C~H~FH~hCI~kWl~ 66 (85)
T PF12861_consen 3 VKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKFPGDD----------------CPLVWGKCSHNFHMHCILKWLS 66 (85)
T ss_pred eEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccCCCCC----------------CceeeccCccHHHHHHHHHHHc
Confidence 568899999999994 799999999999999999765 477899999999999999996
Q ss_pred ---ccCcccccccccc
Q psy16471 94 ---IMDLCIECQANQA 106 (153)
Q Consensus 94 ---~~~~CpiC~~~~~ 106 (153)
.+..||+||+.+.
T Consensus 67 ~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 67 TQSSKGQCPMCRQPWK 82 (85)
T ss_pred cccCCCCCCCcCCeee
Confidence 4689999999883
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.47 E-value=1.6e-14 Score=89.17 Aligned_cols=44 Identities=34% Similarity=0.699 Sum_probs=36.8
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr 143 (153)
+.|+||+.++..+. .++.++|||.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~----~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGE----KVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTS----CEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCC----eEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36899999996533 566777999999999999999999999997
No 10
>KOG1493|consensus
Probab=99.28 E-value=6.7e-13 Score=91.78 Aligned_cols=69 Identities=28% Similarity=0.459 Sum_probs=62.7
Q ss_pred ccccceEEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--
Q psy16471 21 KGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-- 93 (153)
Q Consensus 21 ~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-- 93 (153)
.++++...+..|.|+ +.+++-.++..|+.|+.+.+| ||+|||.|+|.||.|||.+|+
T Consensus 3 vki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDd----------------CPLv~G~C~h~fh~hCI~~wl~~ 66 (84)
T KOG1493|consen 3 VKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKLPGDD----------------CPLVWGYCLHAFHAHCILKWLNT 66 (84)
T ss_pred eEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcCCCCC----------------CccHHHHHHHHHHHHHHHHHhcC
Confidence 567888999999997 789999999999999999876 578999999999999999996
Q ss_pred --ccCccccccccc
Q psy16471 94 --IMDLCIECQANQ 105 (153)
Q Consensus 94 --~~~~CpiC~~~~ 105 (153)
+...||.||+.+
T Consensus 67 ~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 67 PTSQGQCPMCRQTW 80 (84)
T ss_pred ccccccCCcchhee
Confidence 667899999987
No 11
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.16 E-value=9e-12 Score=85.18 Aligned_cols=66 Identities=32% Similarity=0.652 Sum_probs=55.8
Q ss_pred ccccceEEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-c
Q psy16471 21 KGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-I 94 (153)
Q Consensus 21 ~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~ 94 (153)
++++++.+|+.|+|. ++++.+...+.|+-|+.+.++ | ++++|.|+|.||++||.+|+ .
T Consensus 2 ~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~~~----~------------~i~~~~C~H~FH~~Ci~~Wl~~ 65 (73)
T PF12678_consen 2 FKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQAPQDE----C------------PIVWGPCGHIFHFHCISQWLKQ 65 (73)
T ss_dssp EEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCTTT----S-------------EEEETTSEEEEHHHHHHHHTT
T ss_pred eEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcCCccc----c------------ceEecccCCCEEHHHHHHHHhc
Confidence 578999999999985 889999999999999887633 3 34688999999999999997 7
Q ss_pred cCcccccc
Q psy16471 95 MDLCIECQ 102 (153)
Q Consensus 95 ~~~CpiC~ 102 (153)
...||+||
T Consensus 66 ~~~CP~CR 73 (73)
T PF12678_consen 66 NNTCPLCR 73 (73)
T ss_dssp SSB-TTSS
T ss_pred CCcCCCCC
Confidence 77999996
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.03 E-value=1.5e-10 Score=95.47 Aligned_cols=53 Identities=23% Similarity=0.500 Sum_probs=42.4
Q ss_pred cCccccccccccCCC-CccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTT-SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~-~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
...||||+..+...+ ......+.++|+|.||..||.+|++.+++||+||.++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 467999999875432 11223567789999999999999999999999999865
No 13
>KOG4628|consensus
Probab=98.98 E-value=2.1e-10 Score=98.84 Aligned_cols=46 Identities=30% Similarity=0.775 Sum_probs=41.5
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCC-CCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~-CP~Cr~~ 145 (153)
..|.||+++|..++ .++.++|+|.||..||+.||....+ ||+|+++
T Consensus 230 ~~CaIClEdY~~Gd----klRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGD----KLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCC----eeeEecCCCchhhccchhhHhhcCccCCCCCCc
Confidence 38999999998887 7788999999999999999988754 9999986
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.92 E-value=9.6e-10 Score=65.57 Aligned_cols=44 Identities=32% Similarity=0.689 Sum_probs=35.8
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCc
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 146 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w 146 (153)
.|++|...+.. .+..+.|||.||..|+.+|++. +..||+||.++
T Consensus 1 ~C~iC~~~~~~------~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE------PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC------ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 37888887721 4566679999999999999998 77899999863
No 15
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.91 E-value=1.1e-09 Score=65.90 Aligned_cols=39 Identities=28% Similarity=0.674 Sum_probs=32.7
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 142 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~C 142 (153)
||||.+.+.+ +++.++|||.|+..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~------~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD------PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS------EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC------cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 6888877644 66789999999999999999999999998
No 16
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.5e-09 Score=92.91 Aligned_cols=54 Identities=26% Similarity=0.559 Sum_probs=41.4
Q ss_pred ccCccccccccccCCC------CccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTT------SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~------~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
..+.|.||+..+-..+ +-+-.+..++|||.||.+|+..|++++++||+||++--
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4557888888742211 12234577999999999999999999999999999843
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.68 E-value=1.6e-08 Score=63.76 Aligned_cols=44 Identities=30% Similarity=0.577 Sum_probs=36.7
Q ss_pred CccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 146 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w 146 (153)
..|++|..... .++..+|||. |...|+.+|++.+..||+||++.
T Consensus 3 ~~C~iC~~~~~-------~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPR-------DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp SB-TTTSSSBS-------SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred CCCccCCccCC-------ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 56889998752 3577899999 99999999999999999999984
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.63 E-value=3.2e-08 Score=59.60 Aligned_cols=39 Identities=31% Similarity=0.704 Sum_probs=32.6
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHc--CCCCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLD 142 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~--~~~~CP~C 142 (153)
|+||+..+.. ....++|||.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~------~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED------PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS------EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC------CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 6888888754 336899999999999999999 45679998
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.62 E-value=2.1e-08 Score=81.99 Aligned_cols=58 Identities=24% Similarity=0.456 Sum_probs=44.1
Q ss_pred ccCccccccccccCC--CCccceEEeeeecceechHHHHHHHcCC------CCCCCCCCCcccccc
Q psy16471 94 IMDLCIECQANQAST--TSEECTVAWGVCNHAFHFHCISRWLKTR------QVCPLDNREWEFQKY 151 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~--~~~~c~~~~~~C~H~FH~~CI~~Wl~~~------~~CP~Cr~~w~~~~~ 151 (153)
....|+||++..... +++.-..++++|+|.|+..||.+|.+++ .+||+||..+.+-..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 356799999876332 3333355788999999999999999863 459999999876543
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.61 E-value=3.2e-08 Score=56.89 Aligned_cols=38 Identities=32% Similarity=0.735 Sum_probs=30.2
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLD 142 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~C 142 (153)
|++|.... . .++.++|||.||..||.+|++ .+..||+|
T Consensus 1 C~iC~~~~--~-----~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL--K-----DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC--C-----CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 56777662 1 446678999999999999998 56779987
No 21
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.9e-08 Score=84.39 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=39.6
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCCCCCc
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREW 146 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~w 146 (153)
.|.||..++.-++ ..+.++|.|.||..||++|+. .+..||.||.+-
T Consensus 325 eCaICms~fiK~d----~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 325 ECAICMSNFIKND----RLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred eEEEEhhhhcccc----eEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 5899999995443 578899999999999999998 678899999873
No 22
>KOG0802|consensus
Probab=98.57 E-value=2e-08 Score=90.85 Aligned_cols=50 Identities=30% Similarity=0.598 Sum_probs=43.1
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
....|+||++.....++ -.+..++|+|+||..|+.+|+++.++||+||..
T Consensus 290 ~~~~C~IC~e~l~~~~~--~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHN--ITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccc--cccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 46789999999976543 346789999999999999999999999999983
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.53 E-value=6.9e-08 Score=59.59 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=36.7
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 144 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 144 (153)
.|++|...+... -...+++|||+|...||.+.......||+||+
T Consensus 1 ~C~~C~~~~~~~----~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEE----RRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCC----CCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 378999998222 26788999999999999999966778999985
No 24
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.53 E-value=9.4e-09 Score=63.17 Aligned_cols=43 Identities=35% Similarity=0.639 Sum_probs=31.7
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccc
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQ 102 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~ 102 (153)
|.|+||++++.+. + .++.-.|+|.||..|+.+|. .+..||+||
T Consensus 1 d~C~IC~~~~~~~-------------~--~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDG-------------E--KVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTT-------------S--CEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCC-------------C--eEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6899999999641 1 11223499999999999997 677999996
No 25
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.44 E-value=1.5e-07 Score=75.53 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=37.4
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC----------------CCCCCCCCCCcccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT----------------RQVCPLDNREWEFQ 149 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~----------------~~~CP~Cr~~w~~~ 149 (153)
...|+||...+.. + +...|||.|+..||.+|+.. ...||+||++....
T Consensus 18 ~~~CpICld~~~d------P-VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 18 DFDCNICLDQVRD------P-VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred ccCCccCCCcCCC------c-EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 3569999988743 2 44689999999999999853 24799999987543
No 26
>KOG0317|consensus
Probab=98.44 E-value=9.8e-08 Score=80.34 Aligned_cols=51 Identities=25% Similarity=0.614 Sum_probs=43.3
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 151 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~ 151 (153)
..+.|.+|+.+...- ...+|||.|...||.+|+..+..||+||.++..+|.
T Consensus 238 a~~kC~LCLe~~~~p-------SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP-------SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCC-------CcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 346799999887432 347899999999999999999999999999888775
No 27
>KOG0320|consensus
Probab=98.44 E-value=8.8e-08 Score=75.87 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=44.0
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~ 150 (153)
..-.||||+..+... .++..+|||+|...||..=++....||+|++.-..+.
T Consensus 130 ~~~~CPiCl~~~sek-----~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK-----VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhc-----cccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 345699999999766 6688999999999999999999999999998644433
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.41 E-value=3.3e-07 Score=59.48 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=38.4
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
.||+|...+.. + +..+|||+|.+.||.+|++.+.+||+|+.+...
T Consensus 3 ~Cpi~~~~~~~------P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKD------P-VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCC------C-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 58999988754 2 556899999999999999999999999988654
No 29
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.36 E-value=3.6e-07 Score=56.25 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=28.1
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLD 142 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~C 142 (153)
||||+..+.. ++.++|||+|...||.+|.+.. -.||.|
T Consensus 1 CpiC~~~~~~-------Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-------PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-------EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-------ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 7889888743 4778999999999999999874 359987
No 30
>KOG4628|consensus
Probab=98.13 E-value=8e-07 Score=76.85 Aligned_cols=50 Identities=26% Similarity=0.505 Sum_probs=38.9
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTT 109 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~ 109 (153)
++|+||.++|.+....-.+ .|.|.||..||..|+ .+..||+|.++.....
T Consensus 230 ~~CaIClEdY~~GdklRiL---------------PC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRIL---------------PCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEe---------------cCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 5999999999864433223 399999999999998 4456999999884443
No 31
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=2.6e-06 Score=74.93 Aligned_cols=49 Identities=27% Similarity=0.414 Sum_probs=40.3
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~ 149 (153)
..-.|+||...+.. + +.++|||.|+..||.+|+.....||+||.+....
T Consensus 25 ~~l~C~IC~d~~~~------P-vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDV------P-VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhC------c-cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 34579999987733 2 4679999999999999999988999999986543
No 32
>KOG1734|consensus
Probab=98.03 E-value=1e-06 Score=74.01 Aligned_cols=61 Identities=25% Similarity=0.530 Sum_probs=46.7
Q ss_pred cccccCccccccccccCCCCcc---ceEEeeeecceechHHHHHHHcC--CCCCCCCCCCcccccc
Q psy16471 91 RNHIMDLCIECQANQASTTSEE---CTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEFQKY 151 (153)
Q Consensus 91 ~w~~~~~CpiC~~~~~~~~~~~---c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w~~~~~ 151 (153)
+.+++..|.+|.+.+.....++ .-...++|+|+||..||.-|.-- +++||.|+..-+++.+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 4457889999999885443222 24467999999999999999864 6899999987776654
No 33
>KOG0827|consensus
Probab=98.01 E-value=2.3e-06 Score=74.93 Aligned_cols=47 Identities=28% Similarity=0.731 Sum_probs=35.8
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC---CCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDN 143 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr 143 (153)
.++.|.||..-+ +.++-...++.|||+||..|+.+|++.. ..||+|+
T Consensus 3 i~A~C~Ic~d~~---p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 3 IMAECHICIDGR---PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ccceeeEeccCC---ccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 467899994333 2233355668899999999999999983 5799999
No 34
>KOG0823|consensus
Probab=97.98 E-value=4.4e-06 Score=68.51 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=36.8
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcCC---CCCCCCCCCccccc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWEFQK 150 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~~w~~~~ 150 (153)
--|-||+....+ + +..-|||.|...||.+||.++ +.||+|+++....+
T Consensus 48 FdCNICLd~akd------P-VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 48 FDCNICLDLAKD------P-VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred eeeeeeccccCC------C-EEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 346788876533 3 456699999999999999984 45999999876544
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.94 E-value=7.1e-06 Score=50.92 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=21.0
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR 136 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~ 136 (153)
||||++ +.+. +=.++.++|||+|...||+++++.+
T Consensus 1 CpIc~e-~~~~---~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTE---ENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TT---SS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCC---CCCCEEEeCccHHHHHHHHHHHhcC
Confidence 799999 6221 1156778899999999999999864
No 36
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.87 E-value=1.2e-05 Score=51.11 Aligned_cols=41 Identities=20% Similarity=0.604 Sum_probs=29.3
Q ss_pred cccccccccCCCCccceEEeeeec-----ceechHHHHHHHcCC--CCCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDN 143 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr 143 (153)
|-||+...+.+ .+...+|. |.||..||.+|+..+ .+||+|+
T Consensus 2 CrIC~~~~~~~-----~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEG-----DPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCC-----CeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 66787622111 33456785 999999999999764 4899995
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.86 E-value=2.4e-06 Score=57.95 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=23.8
Q ss_pred CccccccccccCCCCccceE-Ee--eeecceechHHHHHHHcC-----------CCCCCCCCCCccc
Q psy16471 96 DLCIECQANQASTTSEECTV-AW--GVCNHAFHFHCISRWLKT-----------RQVCPLDNREWEF 148 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~-~~--~~C~H~FH~~CI~~Wl~~-----------~~~CP~Cr~~w~~ 148 (153)
..|+||....... ++-+. +- ..|+..||..||.+||+. .++||.|+++..+
T Consensus 3 ~~C~IC~~~~~~~--~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDD--GEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCC--CCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 3588898876421 11111 22 479999999999999974 1359999988654
No 38
>KOG0828|consensus
Probab=97.80 E-value=5.8e-06 Score=74.32 Aligned_cols=50 Identities=26% Similarity=0.742 Sum_probs=37.6
Q ss_pred CccccccccccCCC-CccceE---------EeeeecceechHHHHHHHcCCC-CCCCCCCC
Q psy16471 96 DLCIECQANQASTT-SEECTV---------AWGVCNHAFHFHCISRWLKTRQ-VCPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~-~~~c~~---------~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~ 145 (153)
.-|+||.++++-.. +.+|.+ ...+|.|+||..|+.+|+.+.+ .||.||.+
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~p 632 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCP 632 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCC
Confidence 45999999884321 112322 3468999999999999999655 89999987
No 39
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.69 E-value=1.3e-05 Score=66.26 Aligned_cols=54 Identities=26% Similarity=0.467 Sum_probs=38.9
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
.++.|+||.+.+.+.-.. ..-..+-..|+|.||..|+.+|. ....||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~----------~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIK----------NMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccc----------cccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 357899999987652110 00011234699999999999997 7789999999873
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.61 E-value=1.6e-05 Score=76.03 Aligned_cols=31 Identities=35% Similarity=0.954 Sum_probs=27.1
Q ss_pred eeecceechHHHHHHHcC--CCCCCCCCCCccc
Q psy16471 118 GVCNHAFHFHCISRWLKT--RQVCPLDNREWEF 148 (153)
Q Consensus 118 ~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w~~ 148 (153)
+.|.|-||..||.+|+++ +++||+||.+..+
T Consensus 1492 ~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1492 ATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred chhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 469999999999999998 5789999998654
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.57 E-value=3.1e-05 Score=65.98 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.3
Q ss_pred eEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
+++...|||.|..-||...|.+++.||+||.++.+
T Consensus 37 ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 37 IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 44668899999999999999999999999998653
No 42
>KOG2164|consensus
Probab=97.55 E-value=3.9e-05 Score=69.03 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=37.2
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-----CCCCCCCCCccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNREWEF 148 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-----~~CP~Cr~~w~~ 148 (153)
...||||+.+.. ..+.+.|||+|+..||-+.+.+. ..|||||....+
T Consensus 186 ~~~CPICL~~~~-------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 567999998862 33456699999999999988764 579999976544
No 43
>KOG0804|consensus
Probab=97.49 E-value=4.9e-05 Score=67.64 Aligned_cols=46 Identities=28% Similarity=0.668 Sum_probs=36.0
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 144 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 144 (153)
.-|.||+|+.-+....+ -++...|.|.||-.|+.+| ...+||+||-
T Consensus 174 ELPTCpVCLERMD~s~~---gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTT---GILTILCNHSFHCSCLMKW--WDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCcccc---ceeeeecccccchHHHhhc--ccCcChhhhh
Confidence 45789999988844322 3566779999999999999 4567999983
No 44
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=4.9e-05 Score=63.57 Aligned_cols=50 Identities=24% Similarity=0.477 Sum_probs=40.2
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHH-HHcCCCC-CCCCCCCcccccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR-WLKTRQV-CPLDNREWEFQKY 151 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~-Wl~~~~~-CP~Cr~~w~~~~~ 151 (153)
...|++|....+. +....|||+|...||.. |-+.+.. ||+||+.-..++.
T Consensus 215 d~kC~lC~e~~~~-------ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEV-------PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCC-------cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 3459999988633 35578999999999999 9988766 9999998776653
No 45
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.40 E-value=0.00013 Score=62.33 Aligned_cols=53 Identities=17% Similarity=0.395 Sum_probs=36.9
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHH-cCCCCCCCCCCCccccc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWEFQK 150 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~~w~~~~ 150 (153)
..||+|......++.- ......|||.|+..||++.+ .....||.|+......+
T Consensus 4 ~~CP~Ck~~~y~np~~--kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSL--KLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCcCCCCCccCccc--ccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4699999875444311 11223799999999999955 44568999998765443
No 46
>KOG0287|consensus
Probab=97.40 E-value=5.5e-05 Score=65.61 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=29.9
Q ss_pred eEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
++++.+|+|.|..-||...|..+.+||.|+.++.
T Consensus 35 ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 35 IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred CceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 3355679999999999999999999999998854
No 47
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.35 E-value=4.8e-05 Score=44.81 Aligned_cols=42 Identities=26% Similarity=0.601 Sum_probs=31.4
Q ss_pred cccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc--cCcccccccc
Q psy16471 46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI--MDLCIECQAN 104 (153)
Q Consensus 46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~--~~~CpiC~~~ 104 (153)
.|+||...+.+ +.....|+|.||..|+.+|.. ...||+|+..
T Consensus 1 ~C~iC~~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFRE-----------------PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhC-----------------ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 48899887622 122345999999999999973 6779999865
No 48
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.28 E-value=0.00031 Score=47.57 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=32.8
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCccc
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 148 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~ 148 (153)
.|||+..-+.+ + +.+++||+|-+.+|.+||+. +.+||+++.+-..
T Consensus 6 ~CpIt~~lM~d------P-Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 6 LCPITGELMRD------P-VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp B-TTTSSB-SS------E-EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred CCcCcCcHhhC------c-eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 58888877743 3 56789999999999999999 7899999887543
No 49
>KOG0825|consensus
Probab=97.25 E-value=5e-05 Score=71.56 Aligned_cols=50 Identities=22% Similarity=0.520 Sum_probs=41.5
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
...-||+|...+..+. ......|+|.||.+||..|-+.-++||+||.+|.
T Consensus 122 ~~~~CP~Ci~s~~DqL----~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQL----EESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHHh----hccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 4566888888875553 4455779999999999999999999999999875
No 50
>KOG3970|consensus
Probab=97.21 E-value=0.00015 Score=60.01 Aligned_cols=59 Identities=29% Similarity=0.467 Sum_probs=47.9
Q ss_pred ceeeeec----cccc----ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--------CCCCCCCCCCc
Q psy16471 83 AFHFHCI----SRNH----IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDNREW 146 (153)
Q Consensus 83 ~fh~~c~----~~w~----~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--------~~~CP~Cr~~w 146 (153)
..|--|| .+|+ +++.|..|.....++ ..+.+.|-|.||..|+++|... .-+||-|..+.
T Consensus 30 ~nHpkCiVQSYLqWL~DsDY~pNC~LC~t~La~g-----dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 30 ANHPKCIVQSYLQWLQDSDYNPNCRLCNTPLASG-----DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred ccCchhhHHHHHHHHhhcCCCCCCceeCCccccC-----cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 4577777 6674 999999999999776 3456889999999999999865 24799999874
No 51
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.15 E-value=0.00013 Score=43.63 Aligned_cols=38 Identities=32% Similarity=0.701 Sum_probs=28.5
Q ss_pred ccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccc
Q psy16471 47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIEC 101 (153)
Q Consensus 47 C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC 101 (153)
|+||.+.+.+ +.+.-.|||.|...|+.+|. .+..||+|
T Consensus 1 C~iC~~~~~~-----------------~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----------------PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----------------EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC-----------------cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 7889887765 23345799999999999996 67789886
No 52
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00012 Score=62.72 Aligned_cols=46 Identities=24% Similarity=0.627 Sum_probs=36.0
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccc
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQ 105 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~ 105 (153)
-.|+||.+++.- . +. ...--|+|.||..|+.+|. +...||+|+.++
T Consensus 324 veCaICms~fiK------~-------d~--~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIK------N-------DR--LRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcc------c-------ce--EEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 469999998831 1 10 2334599999999999996 899999999886
No 53
>PHA02926 zinc finger-like protein; Provisional
Probab=97.01 E-value=0.00017 Score=59.35 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=37.2
Q ss_pred Cccccccccccccc-hhhhhcCCCCCCccccceeccccccceeeeecccccc-------cCcccccccccc
Q psy16471 44 VDNCAICRNHIMDL-CIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI-------MDLCIECQANQA 106 (153)
Q Consensus 44 ~d~C~IC~~~~~d~-c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~-------~~~CpiC~~~~~ 106 (153)
++.|+||.+.+.+. .+..+. ..+-..|+|.|.+.|+.+|.. ...||+||..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRr----------FGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRY----------FGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCcccccccccccccc----------ccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 58999999887552 111111 112346999999999999973 245999999874
No 54
>KOG0978|consensus
Probab=96.95 E-value=0.00021 Score=66.77 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=38.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF 148 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~ 148 (153)
..=.||+|-..+.+. ++..|+|+|+..||..=+.++ ..||.|.+.|-.
T Consensus 642 ~~LkCs~Cn~R~Kd~-------vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA-------VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhH-------HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 344699998776543 567899999999999999986 469999998753
No 55
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.89 E-value=0.00024 Score=47.85 Aligned_cols=42 Identities=26% Similarity=0.521 Sum_probs=21.0
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCc
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 146 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w 146 (153)
+|++|..-+.. ++.++.|.|+|...||.+-+.+ .||+|+.+=
T Consensus 9 rCs~C~~~l~~------pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Pa 50 (65)
T PF14835_consen 9 RCSICFDILKE------PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPA 50 (65)
T ss_dssp S-SSS-S--SS-------B---SSS--B-TTTGGGGTTT--B-SSS--B-
T ss_pred CCcHHHHHhcC------CceeccCccHHHHHHhHHhcCC--CCCCcCChH
Confidence 57788766533 6678999999999999886554 499999774
No 56
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.86 E-value=0.00035 Score=43.78 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=34.9
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeeccccc-ccCcccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
++.|.||.+...+ .+...|+|. |-..|..+|. ....||+|+++++
T Consensus 2 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD------------------VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS------------------EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc------------------eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999887643 234569999 9999999997 8889999999873
No 57
>KOG2177|consensus
Probab=96.84 E-value=0.00045 Score=54.16 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=35.7
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr 143 (153)
.-.||||...+.. + ..++|+|.|...||..+....-.||.||
T Consensus 13 ~~~C~iC~~~~~~------p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFRE------P-VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhhc------C-ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 4479999999844 2 6789999999999999988656799999
No 58
>KOG1645|consensus
Probab=96.75 E-value=0.0011 Score=58.75 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=37.8
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~ 145 (153)
..||+|+..|... ++. .++.+.|||.|-..||++||-. ..+||.|..+
T Consensus 5 ~tcpiclds~~~~-g~h-r~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 5 TTCPICLDSYTTA-GNH-RIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccCceeeeeeeec-Cce-EEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 5799999998543 222 5678899999999999999952 3579999754
No 59
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00051 Score=60.34 Aligned_cols=57 Identities=21% Similarity=0.427 Sum_probs=38.5
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
+..|+||++++.++.-+ +.+.+. +=.+.-=.|||-||+||...|. --..||||+.++
T Consensus 287 D~~C~ICmde~~h~~~~-~~~~~~----~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 287 DRTCTICMDEMFHPDHE-PLPRGL----DMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCeEEEecccccCCCCc-cCcccc----cCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 46899999998764321 111110 1111123499999999999998 556899999884
No 60
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.57 E-value=0.0019 Score=42.24 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=28.8
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPL 141 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~ 141 (153)
.+..||+.+..+.+ ++....|||+|=+.-|.++|+.+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~------PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED------PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS------EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC------CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45679999988754 77778999999999999999543 46998
No 61
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.49 E-value=0.0012 Score=46.43 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=27.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHH
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 131 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~ 131 (153)
....|++|.+.+... ..+..+|||+||..|+.+
T Consensus 77 ~~~~C~vC~k~l~~~-----~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS-----VFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCc-----eEEEeCCCeEEecccccC
Confidence 456799999999665 778889999999999863
No 62
>KOG1039|consensus
Probab=96.48 E-value=0.0014 Score=56.94 Aligned_cols=54 Identities=26% Similarity=0.529 Sum_probs=36.8
Q ss_pred cCccccccccccCCC-CccceEEeeeecceechHHHHHHHc--C-----CCCCCCCCCCccc
Q psy16471 95 MDLCIECQANQASTT-SEECTVAWGVCNHAFHFHCISRWLK--T-----RQVCPLDNREWEF 148 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~-~~~c~~~~~~C~H~FH~~CI~~Wl~--~-----~~~CP~Cr~~w~~ 148 (153)
...|.||.+...... .+.-..++++|.|.|...||.+|-. + ...||.||..-++
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 445777777764432 1111234578999999999999994 3 4679999976544
No 63
>KOG4445|consensus
Probab=96.29 E-value=0.0012 Score=56.57 Aligned_cols=55 Identities=29% Similarity=0.667 Sum_probs=43.8
Q ss_pred ccccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-----------------------CCCCCCCCCCccc
Q psy16471 92 NHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-----------------------RQVCPLDNREWEF 148 (153)
Q Consensus 92 w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-----------------------~~~CP~Cr~~w~~ 148 (153)
.+.+.-|.||+-.|.+++ ......|-|.||++|+.+.|.. ...||+||-.-++
T Consensus 112 n~p~gqCvICLygfa~~~----~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSP----AFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCCceEEEEEeecCCC----ceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 358889999999997765 6788899999999999998852 2359999977655
Q ss_pred cc
Q psy16471 149 QK 150 (153)
Q Consensus 149 ~~ 150 (153)
..
T Consensus 188 e~ 189 (368)
T KOG4445|consen 188 EE 189 (368)
T ss_pred cc
Confidence 43
No 64
>KOG1941|consensus
Probab=96.19 E-value=0.0014 Score=57.93 Aligned_cols=45 Identities=22% Similarity=0.519 Sum_probs=34.3
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNR 144 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~ 144 (153)
.|..|.+.+...+ ...-.++|.|+||..|+.+.|+++ .+||-||+
T Consensus 367 ~Cg~CGe~~Glk~---e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 367 YCGLCGESIGLKN---ERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhcCCc---ccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3777777763331 245568999999999999999886 57999993
No 65
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.15 E-value=0.0012 Score=53.21 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=35.1
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc-----------------cCccccccccccC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI-----------------MDLCIECQANQAS 107 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~-----------------~~~CpiC~~~~~~ 107 (153)
-.|+||.+.+.+. +.-.|+|.|...|+.+|.. ...||+|+.++..
T Consensus 19 ~~CpICld~~~dP------------------VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 19 FDCNICLDQVRDP------------------VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCccCCCcCCCc------------------EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 5799999887652 1236999999999999851 3579999998854
No 66
>KOG0827|consensus
Probab=95.86 E-value=0.0017 Score=57.21 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=23.1
Q ss_pred ccccccceeeeeccccc----ccCcccccc
Q psy16471 77 WGVCNHAFHFHCISRNH----IMDLCIECQ 102 (153)
Q Consensus 77 ~g~C~H~fh~~c~~~w~----~~~~CpiC~ 102 (153)
-|.|||.||.-|+.+|- +++.||||+
T Consensus 23 i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 23 IGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 57799999999999994 667899999
No 67
>KOG0824|consensus
Probab=95.80 E-value=0.0037 Score=53.45 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=26.5
Q ss_pred EeeeecceechHHHHHHHcCC-CCCCCCCCCcc
Q psy16471 116 AWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 147 (153)
Q Consensus 116 ~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~ 147 (153)
+.+.|+|.|.+-||.-=++.. .+||+||.+..
T Consensus 21 v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 21 VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred ccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 678899999999998766664 56999998864
No 68
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.62 E-value=0.0042 Score=36.88 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=28.1
Q ss_pred ccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccc
Q psy16471 47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIEC 101 (153)
Q Consensus 47 C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC 101 (153)
|+||.+.+.+.- ..-.|+|.|...|+.+|. ....||.|
T Consensus 1 C~iC~~~~~~~~-----------------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV-----------------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE-----------------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC-----------------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788988876532 134699999999999885 44567765
No 69
>KOG4172|consensus
Probab=95.58 E-value=0.0033 Score=41.27 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=24.3
Q ss_pred Eeeeecce-echHHHHHHHc-CCCCCCCCCCCcc
Q psy16471 116 AWGVCNHA-FHFHCISRWLK-TRQVCPLDNREWE 147 (153)
Q Consensus 116 ~~~~C~H~-FH~~CI~~Wl~-~~~~CP~Cr~~w~ 147 (153)
++-.|||. ..++|-.+-++ ...+||+||++-+
T Consensus 21 VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 21 VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 44569997 67888766554 7899999999844
No 70
>KOG0802|consensus
Probab=95.54 E-value=0.0021 Score=58.48 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=36.9
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
.+.|+||++.+...-- -+..--.|+|.||..|+.+|. ....||+|+..+
T Consensus 291 ~~~C~IC~e~l~~~~~-------------~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHN-------------ITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccc-------------cccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 6899999999864211 011123599999999999997 778999999844
No 71
>KOG0297|consensus
Probab=95.41 E-value=0.0071 Score=53.14 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=44.4
Q ss_pred cceeeeeccccc-ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 82 HAFHFHCISRNH-IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 82 H~fh~~c~~~w~-~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
+.|++....+.. .+-.||+|.....+- +....|||.|...||.+|+..++.||.|+.+=.+
T Consensus 7 ~~~~~~~~~~~~~~~l~C~~C~~vl~~p------~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 7 MGFDLKHLGRPLDENLLCPICMSVLRDP------VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred ccccccccCCCCcccccCccccccccCC------CCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 344444444443 556799999887442 1225899999999999999999999999876443
No 72
>KOG0804|consensus
Probab=95.32 E-value=0.0096 Score=53.35 Aligned_cols=76 Identities=21% Similarity=0.485 Sum_probs=47.7
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccCCC----------Cccce
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTT----------SEECT 114 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~~~----------~~~c~ 114 (153)
-+|++|.+.|++ +.-.++.-.|+|+||-.|+.+|- ...||+||.-....+ ..+=.
T Consensus 176 PTCpVCLERMD~--------------s~~gi~t~~c~Hsfh~~cl~~w~-~~scpvcR~~q~p~~ve~~~c~~c~~~~~L 240 (493)
T KOG0804|consen 176 PTCPVCLERMDS--------------STTGILTILCNHSFHCSCLMKWW-DSSCPVCRYCQSPSVVESSLCLACGCTEDL 240 (493)
T ss_pred CCcchhHhhcCc--------------cccceeeeecccccchHHHhhcc-cCcChhhhhhcCcchhhhhhhhhhcccccE
Confidence 589999998864 22245566799999999999994 335777664433110 01115
Q ss_pred EEeeeecce----ech-HHHHHHHcC
Q psy16471 115 VAWGVCNHA----FHF-HCISRWLKT 135 (153)
Q Consensus 115 ~~~~~C~H~----FH~-~CI~~Wl~~ 135 (153)
++.+.|||+ |+. |=+.-|-++
T Consensus 241 wicliCg~vgcgrY~eghA~rHweet 266 (493)
T KOG0804|consen 241 WICLICGNVGCGRYKEGHARRHWEET 266 (493)
T ss_pred EEEEEccceecccccchhHHHHHHhh
Confidence 567888887 332 344455544
No 73
>KOG0311|consensus
Probab=95.23 E-value=0.0023 Score=55.67 Aligned_cols=44 Identities=27% Similarity=0.567 Sum_probs=35.4
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~ 145 (153)
-.||||+.-+.. .+....|.|-|.+.||.+=++. ++.||.||+.
T Consensus 44 v~c~icl~llk~------tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~ 88 (381)
T KOG0311|consen 44 VICPICLSLLKK------TMTTKECLHRFCFDCIWKALRSGNNECPTCRKK 88 (381)
T ss_pred hccHHHHHHHHh------hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhh
Confidence 458888877643 3456789999999999998876 6789999975
No 74
>KOG0309|consensus
Probab=95.20 E-value=0.011 Score=56.21 Aligned_cols=39 Identities=31% Similarity=0.792 Sum_probs=31.4
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 141 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~ 141 (153)
|.+|--.+... ..+.+.|+|+.|..|..+|+++...||.
T Consensus 1031 C~~C~l~V~gs-----s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVRGS-----SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeEeeEeecc-----chhhccccccccHHHHHHHHhcCCcCCC
Confidence 66666555433 5577899999999999999999999994
No 75
>KOG2114|consensus
Probab=95.16 E-value=0.01 Score=56.63 Aligned_cols=41 Identities=24% Similarity=0.619 Sum_probs=33.1
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
..|.+|....+- +.|--.|||.||.||+. +....||-|+.+
T Consensus 841 skCs~C~~~Ldl------P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDL------PFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCcccc------ceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 358888877633 67888999999999999 556779999974
No 76
>KOG4265|consensus
Probab=95.10 E-value=0.015 Score=50.62 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=36.3
Q ss_pred cCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
...|.||+....+ .+.++|.|. ....|-+.-.-+.+.|||||++..
T Consensus 290 gkeCVIClse~rd-------t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRD-------TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcc-------eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 4467888876533 367899998 899999988777778999999864
No 77
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.07 E-value=0.0049 Score=34.64 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=18.9
Q ss_pred ccccceeeeeccccc--ccCccccc
Q psy16471 79 VCNHAFHFHCISRNH--IMDLCIEC 101 (153)
Q Consensus 79 ~C~H~fh~~c~~~w~--~~~~CpiC 101 (153)
.|+|.||..|+.+|. ....||.|
T Consensus 15 ~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 15 PCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred cCCChHHHHHHHHHHHhCcCCCCCC
Confidence 599999999999996 45568875
No 78
>KOG0823|consensus
Probab=94.96 E-value=0.01 Score=48.86 Aligned_cols=46 Identities=24% Similarity=0.500 Sum_probs=36.1
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC~~~~~~ 107 (153)
.-.|.||.+.-.|. |.--|||+|--.|+.+|+ ....||+|...++.
T Consensus 47 ~FdCNICLd~akdP------------------VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 47 FFDCNICLDLAKDP------------------VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred ceeeeeeccccCCC------------------EEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 34799998876653 234599999999999996 55678999988844
No 79
>KOG3268|consensus
Probab=94.82 E-value=0.024 Score=45.62 Aligned_cols=37 Identities=27% Similarity=0.632 Sum_probs=30.1
Q ss_pred eeeecceechHHHHHHHcC----C-------CCCCCCCCCccccccCC
Q psy16471 117 WGVCNHAFHFHCISRWLKT----R-------QVCPLDNREWEFQKYGH 153 (153)
Q Consensus 117 ~~~C~H~FH~~CI~~Wl~~----~-------~~CP~Cr~~w~~~~~~~ 153 (153)
-..||..||.-|+..||+. + +.||.|..+-.++.-||
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSgk 234 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSGK 234 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccCC
Confidence 3679999999999999984 1 46999999977766553
No 80
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.76 E-value=0.029 Score=43.96 Aligned_cols=31 Identities=26% Similarity=0.805 Sum_probs=24.9
Q ss_pred ecc---eechHHHHHHHcCC--CCCCCCCCCccccc
Q psy16471 120 CNH---AFHFHCISRWLKTR--QVCPLDNREWEFQK 150 (153)
Q Consensus 120 C~H---~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~ 150 (153)
|.. .-|..|+++|+..+ ..||+|+.++.+.+
T Consensus 27 CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 27 CKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred cCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 555 45999999999874 56999999987664
No 81
>PHA02862 5L protein; Provisional
Probab=94.73 E-value=0.02 Score=44.43 Aligned_cols=30 Identities=20% Similarity=0.641 Sum_probs=24.2
Q ss_pred ceechHHHHHHHcCC--CCCCCCCCCcccccc
Q psy16471 122 HAFHFHCISRWLKTR--QVCPLDNREWEFQKY 151 (153)
Q Consensus 122 H~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~~ 151 (153)
-.-|..|+.+|++.. ..||+|+.++.+++.
T Consensus 26 K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 26 KVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred hhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence 457999999999874 579999998776543
No 82
>KOG4185|consensus
Probab=94.65 E-value=0.028 Score=46.82 Aligned_cols=53 Identities=21% Similarity=0.415 Sum_probs=42.3
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF 148 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~ 148 (153)
-+.|-+|..+|+...++.. +..+.|||.|...|+.+-+... ..||.||..+++
T Consensus 3 ~~~c~~c~~~~s~~~~~~~-p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~ 56 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHI-PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEI 56 (296)
T ss_pred CCceeecCccccccCcccC-CcccccCceehHhHHHHHhcCceeeccCCCCcccC
Confidence 3568899999988854444 4566799999999999998875 469999998753
No 83
>KOG1734|consensus
Probab=94.48 E-value=0.0088 Score=50.72 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=37.5
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~~~ 107 (153)
+..|++|-..+..+-.+ .+.. |+ .-.=.|||+||-.||..|- .++.||.|.+-++.
T Consensus 224 d~vCaVCg~~~~~s~~e---egvi---en--ty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDE---EGVI---EN--TYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred cchhHhhcchheeecch---hhhh---hh--heeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 56899998877653210 0000 10 0122599999999999994 88899999977633
No 84
>KOG2660|consensus
Probab=94.48 E-value=0.011 Score=51.08 Aligned_cols=29 Identities=28% Similarity=0.622 Sum_probs=26.3
Q ss_pred EeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471 116 AWGVCNHAFHFHCISRWLKTRQVCPLDNR 144 (153)
Q Consensus 116 ~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 144 (153)
.+..|-|.|...||.+.|+.+..||+|..
T Consensus 30 TI~eCLHTFCkSCivk~l~~~~~CP~C~i 58 (331)
T KOG2660|consen 30 TITECLHTFCKSCIVKYLEESKYCPTCDI 58 (331)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCccce
Confidence 44679999999999999999999999974
No 85
>KOG1940|consensus
Probab=94.45 E-value=0.021 Score=48.33 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=38.7
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 144 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 144 (153)
.+..||+|...+... .-.+..++|||.-|..|+.+-...+=+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s---~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLS---FEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccc---cccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 344599999877333 125667899999999999999999989999987
No 86
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.22 E-value=0.013 Score=39.59 Aligned_cols=52 Identities=25% Similarity=0.524 Sum_probs=20.8
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc------------ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH------------IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~------------~~~~CpiC~~~~ 105 (153)
+..|+||...+.+. +..|...|.. -.|+..||..|+.+|. ....||.|.+++
T Consensus 2 ~~~C~IC~~~~~~~--------~~~p~~~C~n--~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDD--------GEIPDVVCPN--PSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-------------B--S---TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCC--------CCcCceEcCC--cccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 46799998875421 1112222311 2599999999999993 123599998876
No 87
>KOG0317|consensus
Probab=93.88 E-value=0.02 Score=48.65 Aligned_cols=47 Identities=19% Similarity=0.455 Sum_probs=38.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
...|.+|.++..++ . .-.|||.|-.-||..|. .++.||.||..+...
T Consensus 239 ~~kC~LCLe~~~~p--S----------------aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 239 TRKCSLCLENRSNP--S----------------ATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCceEEEecCCCCC--C----------------cCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 46799999987652 1 12599999999999996 888899999998655
No 88
>KOG1952|consensus
Probab=93.87 E-value=0.029 Score=53.65 Aligned_cols=45 Identities=27% Similarity=0.684 Sum_probs=29.9
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCC-------CCCCCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-------QVCPLDNRE 145 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-------~~CP~Cr~~ 145 (153)
|.||...+.... -..--..|-|+||..||.+|.+.. =.||.|+..
T Consensus 194 CmIC~e~I~~t~---~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 194 CMICTERIKRTA---PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred EEEeeeeccccC---CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 455555543321 023336799999999999999862 259999954
No 89
>KOG1428|consensus
Probab=93.64 E-value=0.037 Score=56.15 Aligned_cols=50 Identities=28% Similarity=0.604 Sum_probs=37.3
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----------CCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----------QVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----------~~CP~Cr~~w~ 147 (153)
..+.|-||....-... +-+.+.|+|.||++|..+-|+++ -+||+|..+-+
T Consensus 3485 ~DDmCmICFTE~L~AA----P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAA----PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhCCC----cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 5667888876653332 45678899999999999888763 36999987643
No 90
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=93.56 E-value=0.025 Score=34.51 Aligned_cols=37 Identities=32% Similarity=0.602 Sum_probs=24.4
Q ss_pred ccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---cc--Cccccc
Q psy16471 47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IM--DLCIEC 101 (153)
Q Consensus 47 C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~--~~CpiC 101 (153)
|+||++-|.++ +.-.|||+|=..|+.++. .. ..||.|
T Consensus 1 CpiC~~~~~~P------------------v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP------------------VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE------------------EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc------------------cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 78999988763 233699999999998884 11 357765
No 91
>KOG1785|consensus
Probab=93.29 E-value=0.031 Score=49.84 Aligned_cols=47 Identities=28% Similarity=0.665 Sum_probs=36.5
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w~ 147 (153)
.-.+|-||..+-. -+.+-+|||.....|+..|-.. .++||.||.+-+
T Consensus 368 TFeLCKICaendK-------dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 368 TFELCKICAENDK-------DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred hHHHHHHhhccCC-------CcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3457888887642 3466789999999999999865 478999997754
No 92
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.19 E-value=0.1 Score=32.10 Aligned_cols=24 Identities=29% Similarity=0.744 Sum_probs=16.1
Q ss_pred eecceechHHHHHHHcCCC--CCCCC
Q psy16471 119 VCNHAFHFHCISRWLKTRQ--VCPLD 142 (153)
Q Consensus 119 ~C~H~FH~~CI~~Wl~~~~--~CP~C 142 (153)
.|+=.+|.+|+..++++++ .||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 4666799999999999876 79987
No 93
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=93.17 E-value=0.022 Score=34.72 Aligned_cols=42 Identities=21% Similarity=0.475 Sum_probs=31.7
Q ss_pred ccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccc
Q psy16471 47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQA 103 (153)
Q Consensus 47 C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~ 103 (153)
|.||...+.+.- ...-..|+|.|...|+.+.. ....||+|++
T Consensus 2 C~~C~~~~~~~~---------------~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEER---------------RPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCC---------------CeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 788888872211 23456799999999998887 7778999974
No 94
>KOG1813|consensus
Probab=92.90 E-value=0.046 Score=46.73 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=40.6
Q ss_pred cccccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 91 RNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 91 ~w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
.|..+.-|-||+.+|.. ++...|+|.|...|-.+=++....|++|.+.
T Consensus 237 ~~~~Pf~c~icr~~f~~-------pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~ 284 (313)
T KOG1813|consen 237 IELLPFKCFICRKYFYR-------PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQ 284 (313)
T ss_pred cccCCcccccccccccc-------chhhcCCceeehhhhccccccCCcceecccc
Confidence 34566779999999844 3667899999999999999999999999875
No 95
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=92.84 E-value=0.045 Score=34.98 Aligned_cols=44 Identities=9% Similarity=-0.024 Sum_probs=34.6
Q ss_pred cccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471 46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~ 107 (153)
.|+||+..|.+. +.-.|||.|-..|+.+|. ....||+|+.++..
T Consensus 3 ~Cpi~~~~~~~P------------------v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDP------------------VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCC------------------EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 589999888762 122588999999999996 56789999988743
No 96
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.83 E-value=0.074 Score=33.24 Aligned_cols=21 Identities=24% Similarity=0.803 Sum_probs=16.1
Q ss_pred ceechHHHHHHHcC--CCCCCCC
Q psy16471 122 HAFHFHCISRWLKT--RQVCPLD 142 (153)
Q Consensus 122 H~FH~~CI~~Wl~~--~~~CP~C 142 (153)
-.-|..||.+|++. +.+|++|
T Consensus 25 ~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 25 KYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp GSEECCHHHHHHHHHT-SB-TTT
T ss_pred chhHHHHHHHHHHhcCCCcCCCC
Confidence 36899999999985 4569987
No 97
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.52 E-value=0.051 Score=44.44 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=38.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
.+-.|.||..+|.+ ++...|||.|...|..+=++....|-+|-++
T Consensus 195 IPF~C~iCKkdy~s-------pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 195 IPFLCGICKKDYES-------PVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred Cceeehhchhhccc-------hhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 44589999999844 3667899999999999999999999999865
No 98
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.46 E-value=0.037 Score=49.03 Aligned_cols=43 Identities=28% Similarity=0.546 Sum_probs=34.0
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
-.|+||+..+.+. +.-.|+|.|...|+.+|. ....||.|+..+
T Consensus 27 l~C~IC~d~~~~P------------------vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 27 LRCHICKDFFDVP------------------VLTSCSHTFCSLCIRRCLSNQPKCPLCRAED 70 (397)
T ss_pred cCCCcCchhhhCc------------------cCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence 5799999887542 123599999999999987 445799999876
No 99
>KOG0825|consensus
Probab=92.10 E-value=0.019 Score=54.78 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=24.6
Q ss_pred ccccceeeeeccccc-ccCccccccccc
Q psy16471 79 VCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 79 ~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
.|.|-||.+|+..|. ....||+|+..|
T Consensus 143 ~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 143 HTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred ccccccHHHHhhhhhhhcccCchhhhhh
Confidence 599999999999997 888999999666
No 100
>KOG3039|consensus
Probab=90.73 E-value=0.29 Score=41.23 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=41.8
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
..-.||+++...++.. . ..++.+|||+|-..|+++.++....||+|..+.+
T Consensus 220 ~ryiCpvtrd~LtNt~--~-ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTT--P-CAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCcc--c-eEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 3457999998885542 1 3467789999999999999999999999988765
No 101
>KOG2879|consensus
Probab=90.72 E-value=0.26 Score=41.90 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=36.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w~ 147 (153)
+...||+|...-.- +-+.++|+|+|..-||..=+... -+||.|..+-.
T Consensus 238 ~~~~C~~Cg~~Pti------P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTI------PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCC------CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34568888766421 55678899999999999987765 57999988755
No 102
>KOG0320|consensus
Probab=90.12 E-value=0.062 Score=42.94 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=36.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
.-.|+||...+.+. .++.-.|||.|-.-||..-+ ....||+|+.-+
T Consensus 131 ~~~CPiCl~~~sek----------------~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkI 177 (187)
T KOG0320|consen 131 TYKCPICLDSVSEK----------------VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKI 177 (187)
T ss_pred ccCCCceecchhhc----------------cccccccchhHHHHHHHHHHHhCCCCCCccccc
Confidence 46899999988652 22456799999999999987 677899999755
No 103
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=89.78 E-value=0.17 Score=34.16 Aligned_cols=44 Identities=27% Similarity=0.548 Sum_probs=21.1
Q ss_pred cccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccC
Q psy16471 46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQAS 107 (153)
Q Consensus 46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~ 107 (153)
.|.+|.+-|.+ |+.-|.|.|.|-.-|+..-... .||+|..+.-.
T Consensus 9 rCs~C~~~l~~-----------------pv~l~~CeH~fCs~Ci~~~~~~-~CPvC~~Paw~ 52 (65)
T PF14835_consen 9 RCSICFDILKE-----------------PVCLGGCEHIFCSSCIRDCIGS-ECPVCHTPAWI 52 (65)
T ss_dssp S-SSS-S--SS------------------B---SSS--B-TTTGGGGTTT-B-SSS--B-S-
T ss_pred CCcHHHHHhcC-----------------CceeccCccHHHHHHhHHhcCC-CCCCcCChHHH
Confidence 47888777654 2335789999999999886643 49999987633
No 104
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.67 E-value=0.43 Score=39.53 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=40.0
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
..-.||+....+... .-.+++-+|||+|=..+|.+-- ....||+|-.+|.-
T Consensus 112 ~~~~CPvt~~~~~~~---~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEFNGK---HKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred ceeECCCCCcccCCc---eeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcccc
Confidence 555799999988432 2256677899999999999983 45679999999873
No 105
>KOG4159|consensus
Probab=89.39 E-value=0.22 Score=44.22 Aligned_cols=44 Identities=27% Similarity=0.552 Sum_probs=33.2
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
.|-+|...+. .++..+|||.|...||.+=+..+..||+||.+..
T Consensus 86 ~c~vc~~~l~-------~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 86 ECCVCSRALY-------PPVVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred hhhhhHhhcC-------CCccccccccccHHHHHHHhccCCCCcccccccc
Confidence 4666654432 3355699999999999997777888999998753
No 106
>PHA03096 p28-like protein; Provisional
Probab=88.89 E-value=0.22 Score=42.34 Aligned_cols=49 Identities=20% Similarity=0.448 Sum_probs=34.8
Q ss_pred CccccccccccCCC-CccceEEeeeecceechHHHHHHHcCC---CCCCCCCC
Q psy16471 96 DLCIECQANQASTT-SEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNR 144 (153)
Q Consensus 96 ~~CpiC~~~~~~~~-~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~ 144 (153)
..|.||.......+ .+.---.+..|.|.|...||..|...+ .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999998884432 122233567899999999999999763 45666654
No 107
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.63 E-value=0.3 Score=34.08 Aligned_cols=32 Identities=25% Similarity=0.677 Sum_probs=24.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~ 91 (153)
...|++|...+... +.+...|||.||..|+.|
T Consensus 78 ~~~C~vC~k~l~~~----------------~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 78 STKCSVCGKPLGNS----------------VFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCccCcCCcCCCc----------------eEEEeCCCeEEecccccC
Confidence 57799999888541 334556899999999864
No 108
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.62 E-value=0.38 Score=42.44 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=32.5
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHH--HcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRW--LKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~W--l~~~~~CP~Cr~~w~ 147 (153)
+.+|.||....+. ....+|+|-....|--+- |-....||+||.+|+
T Consensus 61 n~~C~ICA~~~TY-------s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 61 NMNCQICAGSTTY-------SARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cceeEEecCCceE-------EEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 3455556555432 356899999999998664 334667999999997
No 109
>KOG2034|consensus
Probab=88.32 E-value=0.22 Score=48.04 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=28.5
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK 134 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~ 134 (153)
....|.+|..++-.. +-..-+|||.||.+||.+-..
T Consensus 816 p~d~C~~C~~~ll~~-----pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-----PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcC-----cceeeeccchHHHHHHHHHHH
Confidence 455688888887655 556788999999999988764
No 110
>KOG1002|consensus
Probab=87.24 E-value=0.19 Score=46.38 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=33.5
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-----CCCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNRE 145 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~ 145 (153)
....|.+|-.+.++ .+..+|.|.|++-||.+++.. +.+||.|-..
T Consensus 535 ~~~~C~lc~d~aed-------~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~ 584 (791)
T KOG1002|consen 535 GEVECGLCHDPAED-------YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIG 584 (791)
T ss_pred CceeecccCChhhh-------hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccc
Confidence 44457777766432 245789999999999999875 5689999754
No 111
>KOG2164|consensus
Probab=87.14 E-value=0.25 Score=44.97 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=33.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccc------cccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRN------HIMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w------~~~~~CpiC~~~~~~ 107 (153)
...|+||.++.. +.+-+.|||.|-..|+.+. .....||+|+..+..
T Consensus 186 ~~~CPICL~~~~------------------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS------------------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC------------------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 567999987753 1223569999999999554 356789999988744
No 112
>KOG4739|consensus
Probab=86.98 E-value=0.22 Score=41.28 Aligned_cols=37 Identities=22% Similarity=0.482 Sum_probs=28.9
Q ss_pred eEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccC
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 152 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~ 152 (153)
.-.++.|+|+|...|...= ....||+|++.-+..+++
T Consensus 17 ~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~ 53 (233)
T KOG4739|consen 17 PFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLN 53 (233)
T ss_pred ceeeeechhhhhhhhcccC--Cccccccccceeeeeecc
Confidence 5578999999999997643 233899999987766654
No 113
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=86.95 E-value=0.25 Score=27.41 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=14.1
Q ss_pred ccccccccccCCCCccceEEeeeeccee
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAF 124 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~F 124 (153)
.||.|.+.+... ...-..|||.|
T Consensus 2 ~CP~C~~~V~~~-----~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES-----AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh-----cCcCCCCCCCC
Confidence 578888777444 33334567766
No 114
>KOG0828|consensus
Probab=86.89 E-value=0.12 Score=47.09 Aligned_cols=58 Identities=21% Similarity=0.462 Sum_probs=36.1
Q ss_pred cccccccccccc--chhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccc
Q psy16471 45 DNCAICRNHIMD--LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQ 105 (153)
Q Consensus 45 d~C~IC~~~~~d--~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~ 105 (153)
..|+||..+++- +-+.|...... ...+ -...-|+|.||.-|..+|. .+-.||.||.+.
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~-~~~n--Ym~tPC~HifH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMM-VRRN--YMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred ccceEeccccceeeccCcchhhhhh-hhcc--ccccchHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence 469999887652 33333221000 0000 0012499999999999996 556899999876
No 115
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=86.73 E-value=0.45 Score=30.21 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=22.2
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcc
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 147 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~ 147 (153)
||+|...+..... ...-=+||+-+.+.|..+=++. ++.||-||++++
T Consensus 1 cp~C~e~~d~~d~---~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDK---DFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCT---T--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCC---ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 5777777733211 2222368999999999998874 789999999853
No 116
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.01 E-value=0.37 Score=41.51 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=33.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccc-c-ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRN-H-IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w-~-~~~~CpiC~~~~~~ 107 (153)
++.|+||+.+..-. + .- ......|||.|-..|+.+. . ....||.|...+..
T Consensus 3 ~~~CP~Ck~~~y~n-p----------~~--kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRN-P----------SL--KLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccC-c----------cc--ccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 46799998753210 0 00 1112369999999999884 3 55689999988733
No 117
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=84.77 E-value=0.6 Score=35.68 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.1
Q ss_pred cccc-ccCccccccccccCCCCccceEEeeeec------ceechHHHHHHHcCCC
Q psy16471 90 SRNH-IMDLCIECQANQASTTSEECTVAWGVCN------HAFHFHCISRWLKTRQ 137 (153)
Q Consensus 90 ~~w~-~~~~CpiC~~~~~~~~~~~c~~~~~~C~------H~FH~~CI~~Wl~~~~ 137 (153)
+.|. ..-.|.||...+..+ +| ++. ..|| |.||.+|+.+|-+.++
T Consensus 20 ~~w~~~~~EC~IC~~~I~~~-~G--vV~-vt~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 20 DQWPRCTVECQICFDRIDNN-DG--VVY-VTDGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred HHccccCeeehhhhhhhhcC-CC--EEE-EecCCeehHHHHHHHHHHHHHHhhcc
Confidence 4565 466899999999762 22 333 3444 8899999999954443
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=83.41 E-value=0.62 Score=37.35 Aligned_cols=26 Identities=35% Similarity=0.723 Sum_probs=21.1
Q ss_pred eEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 144 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 144 (153)
.+.-..|+-+||..|..+ ..||-|.+
T Consensus 172 ~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 172 TVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred eeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 556678999999999983 66999964
No 119
>KOG2114|consensus
Probab=83.40 E-value=0.36 Score=46.49 Aligned_cols=43 Identities=26% Similarity=0.674 Sum_probs=34.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~ 105 (153)
+.+|.+|...++- |.|-=.|+|+||.||.. .....||-|+.++
T Consensus 840 ~skCs~C~~~Ldl-----------------P~VhF~CgHsyHqhC~e--~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDL-----------------PFVHFLCGHSYHQHCLE--DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCcccc-----------------ceeeeecccHHHHHhhc--cCcccCCccchhh
Confidence 3689999888743 44556799999999999 6677899999754
No 120
>KOG1571|consensus
Probab=82.68 E-value=0.58 Score=40.96 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=30.0
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
.+++|.+|..+..+ .+..+|||+=. |..-- +...+||+||+-
T Consensus 304 ~p~lcVVcl~e~~~-------~~fvpcGh~cc--ct~cs-~~l~~CPvCR~r 345 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS-------AVFVPCGHVCC--CTLCS-KHLPQCPVCRQR 345 (355)
T ss_pred CCCceEEecCCccc-------eeeecCCcEEE--chHHH-hhCCCCchhHHH
Confidence 78889999977533 36789999944 54433 344569999974
No 121
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=82.49 E-value=0.65 Score=30.33 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=28.5
Q ss_pred eEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 151 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~ 151 (153)
..+.++|||..-..|..-+ .-+-||+|.++++..+.
T Consensus 19 ~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccccceeeccccChh--hccCCCCCCCcccCCCC
Confidence 4467899999999998765 33569999999887653
No 122
>KOG2817|consensus
Probab=81.48 E-value=1.4 Score=39.10 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=40.5
Q ss_pred cccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC---CCCCCCCCc
Q psy16471 93 HIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREW 146 (153)
Q Consensus 93 ~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~---~CP~Cr~~w 146 (153)
++--.|||=++..++.. ++..+.|||+.-.+=|++-.+... .||.|=.+=
T Consensus 332 HSvF~CPVlKeqtsdeN----PPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDEN----PPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCC----CCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 45678999888775544 889999999999999999887754 499997663
No 123
>KOG1428|consensus
Probab=80.87 E-value=0.45 Score=48.85 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=21.4
Q ss_pred ccccceeeeec-----ccccccC------ccccccccc
Q psy16471 79 VCNHAFHFHCI-----SRNHIMD------LCIECQANQ 105 (153)
Q Consensus 79 ~C~H~fh~~c~-----~~w~~~~------~CpiC~~~~ 105 (153)
.|+|.||++|. .||+.++ .||+|...+
T Consensus 3506 ~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 49999999998 6776443 499999776
No 124
>KOG0826|consensus
Probab=79.54 E-value=1.2 Score=38.78 Aligned_cols=51 Identities=16% Similarity=0.382 Sum_probs=39.5
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~ 150 (153)
....||+|++...+. -+...-|=+|+..||-+.+++.+.||+=.-+=.++.
T Consensus 299 ~~~~CpvClk~r~Np------tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~ 349 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP------TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDH 349 (357)
T ss_pred ccccChhHHhccCCC------ceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHH
Confidence 567899999887443 244556999999999999999999998665544443
No 125
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=79.07 E-value=1.1 Score=39.39 Aligned_cols=26 Identities=15% Similarity=0.666 Sum_probs=19.6
Q ss_pred ceechHHHHHHHcC-------------CCCCCCCCCCcc
Q psy16471 122 HAFHFHCISRWLKT-------------RQVCPLDNREWE 147 (153)
Q Consensus 122 H~FH~~CI~~Wl~~-------------~~~CP~Cr~~w~ 147 (153)
=....+||.+|+-. +-+||+||+.|=
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 34467899999864 347999999874
No 126
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=78.07 E-value=0.69 Score=41.15 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=0.0
Q ss_pred ccCccccccccc-------cCCCCccceEEeeeecceechHHHHHHHc------CCCCCCCCCCC
Q psy16471 94 IMDLCIECQANQ-------ASTTSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNRE 145 (153)
Q Consensus 94 ~~~~CpiC~~~~-------~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~------~~~~CP~Cr~~ 145 (153)
-++.||+.+... .....+..+-+-+.|||++-.| .|-. +..+|||||..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 677899986544 1223344577889999997654 5653 24579999965
No 128
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.85 E-value=2.2 Score=27.71 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=32.6
Q ss_pred ccCccccccccccC-CCCccceEEeeeecceechHHHHHHHcCCCCCCC--CCCCcc
Q psy16471 94 IMDLCIECQANQAS-TTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL--DNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~-~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~--Cr~~w~ 147 (153)
....|++|...+.. .+ .++-..||=.||+.|-++ ...|-+ |...+.
T Consensus 4 ~~~~C~~Cg~~~~~~dD----iVvCp~CgapyHR~C~~~----~g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDD----IVVCPECGAPYHRDCWEK----AGGCINYSCGTGFE 52 (54)
T ss_pred cCccChhhCCcccCCCC----EEECCCCCCcccHHHHhh----CCceEeccCCCCcc
Confidence 35679999999953 22 777889999999999654 344655 555443
No 129
>KOG4692|consensus
Probab=76.49 E-value=1.5 Score=38.85 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=37.0
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
..++||||-+.-. .-+..+|+|-=...||.+-|.+++.|=.|+..
T Consensus 421 Ed~lCpICyA~pi-------~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktT 465 (489)
T KOG4692|consen 421 EDNLCPICYAGPI-------NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTT 465 (489)
T ss_pred ccccCcceecccc-------hhhccCCCCchHHHHHHHHHhcCCeeeEecce
Confidence 4568999875431 33678999999999999999999999999864
No 130
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.12 E-value=0.68 Score=39.10 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=34.0
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccc-cc--ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR-NH--IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~-w~--~~~~CpiC~~~~~~ 107 (153)
.-.|+||.+..... . .-.|+|.|-.+|+.. |- ...-||.||+-...
T Consensus 215 d~kC~lC~e~~~~p--s----------------~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 215 DYKCFLCLEEPEVP--S----------------CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccceeeeecccCCc--c----------------cccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 35699998887542 1 235999999999988 85 44459999987633
No 131
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=74.62 E-value=3.7 Score=32.27 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=19.8
Q ss_pred CccccccccccCCCCccceEEeeee------------cce-echHHHHHHHc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVC------------NHA-FHFHCISRWLK 134 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C------------~H~-FH~~CI~~Wl~ 134 (153)
.+||||..--.+. |++.| +=. -|..||++.-+
T Consensus 3 ~~CpICme~PHNA-------VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 3 VTCPICMEHPHNA-------VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred ccCceeccCCCce-------EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 4688888654332 33333 333 46789999976
No 132
>KOG0824|consensus
Probab=74.08 E-value=1.8 Score=37.39 Aligned_cols=86 Identities=23% Similarity=0.399 Sum_probs=61.5
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecc--cccccCccccccccccCC-------------
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCIS--RNHIMDLCIECQANQAST------------- 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~--~w~~~~~CpiC~~~~~~~------------- 108 (153)
.+.|+||+....-+ +---|+|-|-+.||. -|+.+..|++|+.++.+.
T Consensus 7 ~~eC~IC~nt~n~P------------------v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~~~LK~ 68 (324)
T KOG0824|consen 7 KKECLICYNTGNCP------------------VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLKYRLKP 68 (324)
T ss_pred CCcceeeeccCCcC------------------ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhhhhhcC
Confidence 46799998876421 233599999999994 456888899999877441
Q ss_pred -----------------------------------CCccceEE---------eeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471 109 -----------------------------------TSEECTVA---------WGVCNHAFHFHCISRWLKTRQVCPLDNR 144 (153)
Q Consensus 109 -----------------------------------~~~~c~~~---------~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 144 (153)
+.+-|-+. .--|.|-|..+|...|.+....||-|+.
T Consensus 69 n~p~~~~~t~~~~~rag~n~nqnvp~~~~dA~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~ 148 (324)
T KOG0824|consen 69 NTPEVKRITRSQAKRAGVNGNQNVPYMKEDAGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRG 148 (324)
T ss_pred CCCCCCcccccHHhhhhhhccCCcchhhhhccccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhc
Confidence 11111111 1238999999999999999999999986
Q ss_pred Ccc
Q psy16471 145 EWE 147 (153)
Q Consensus 145 ~w~ 147 (153)
.-+
T Consensus 149 ~~~ 151 (324)
T KOG0824|consen 149 KIS 151 (324)
T ss_pred CcC
Confidence 544
No 133
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=73.67 E-value=2 Score=26.27 Aligned_cols=32 Identities=19% Similarity=0.481 Sum_probs=22.9
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHH
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWL 133 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl 133 (153)
|++|...-..+. .+.-..|+-.||..|+.-=.
T Consensus 2 C~vC~~~~~~~~----~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 2 CPVCGQSDDDGD----MIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp BTTTTSSCTTSS----EEEBSTTSCEEETTTSTSSH
T ss_pred CcCCCCcCCCCC----eEEcCCCChhhCcccCCCCh
Confidence 677777333332 77778899999999986543
No 134
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=73.42 E-value=2.1 Score=25.23 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=15.8
Q ss_pred ccccccccccCC----CCccceEEeeeecceec
Q psy16471 97 LCIECQANQAST----TSEECTVAWGVCNHAFH 125 (153)
Q Consensus 97 ~CpiC~~~~~~~----~~~~c~~~~~~C~H~FH 125 (153)
.||.|...|.-. ++..-.+.-..|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 466677666221 11112455577888885
No 135
>KOG4718|consensus
Probab=73.29 E-value=1.9 Score=35.53 Aligned_cols=47 Identities=28% Similarity=0.700 Sum_probs=37.1
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
-..|-+|..-+-. .+.-+.||=-||..|+.+.+...++||-|.--|.
T Consensus 181 lk~Cn~Ch~LvIq------g~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQ------GIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhhe------eeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 3458888866533 2345778888999999999999999999987775
No 136
>KOG1813|consensus
Probab=73.15 E-value=1.9 Score=37.04 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=36.8
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~ 107 (153)
+.|.||+..+.++ |...|+|.|-..|-.+-. ....|.+|.++..+
T Consensus 242 f~c~icr~~f~~p------------------Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRP------------------VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccc------------------hhhcCCceeehhhhccccccCCcceeccccccc
Confidence 5799999999752 345799999999998887 55899999988744
No 137
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=72.08 E-value=1 Score=38.97 Aligned_cols=44 Identities=30% Similarity=0.663 Sum_probs=37.3
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
.+.|-||..-|.-.|+ ..|+|.|-.-||.+.+ ..+.||+|+.+.
T Consensus 25 ~lrC~IC~~~i~ip~~------------------TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 25 MLRCRICDCRISIPCE------------------TTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHHhhhhhheeeccee------------------cccccchhHHHHHHHhcCCCCCccccccH
Confidence 3789999888865544 3699999999999998 888999999887
No 138
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=71.77 E-value=2.2 Score=25.17 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=16.7
Q ss_pred ccccccccccCCC----CccceEEeeeecceec
Q psy16471 97 LCIECQANQASTT----SEECTVAWGVCNHAFH 125 (153)
Q Consensus 97 ~CpiC~~~~~~~~----~~~c~~~~~~C~H~FH 125 (153)
.||.|...|...+ ...-.+.-+.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 4777777763221 1112556677888885
No 139
>KOG2066|consensus
Probab=71.65 E-value=1.9 Score=41.49 Aligned_cols=48 Identities=17% Similarity=0.370 Sum_probs=33.2
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 142 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~C 142 (153)
...+|..|..+.......--.++...|||+||..|+..-..+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 55678888887732211122567789999999999988776665 5444
No 140
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=71.64 E-value=1 Score=44.37 Aligned_cols=51 Identities=25% Similarity=0.634 Sum_probs=37.6
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~ 105 (153)
.+.||||-.-+.- .+ -..|+..| |+|.|-||-.|+-+|- .+.+||.||..+
T Consensus 1469 ~eECaICYsvL~~--vd-----r~lPskrC----~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1469 HEECAICYSVLDM--VD-----RSLPSKRC----ATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred cchhhHHHHHHHH--Hh-----ccCCcccc----chhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 4689999765531 01 12345556 6899999999999993 788999999765
No 141
>KOG1645|consensus
Probab=69.92 E-value=1.3 Score=39.78 Aligned_cols=49 Identities=20% Similarity=0.376 Sum_probs=36.6
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~ 105 (153)
..+|+||...+.-...+| ++--.|+|.|=..||.+|+ +...||.|....
T Consensus 4 g~tcpiclds~~~~g~hr-------------~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHR-------------IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceE-------------EeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 368999998886433322 2344699999999999997 777899998543
No 142
>KOG1814|consensus
Probab=68.44 E-value=3.1 Score=37.32 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=33.9
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--------CCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDN 143 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--------~~CP~Cr 143 (153)
..-.|.||.....+. . -.+.++|+|+|...|+..++... -.||-+.
T Consensus 183 slf~C~ICf~e~~G~---~-c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQ---H-CFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCc---c-eeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 344688888776443 2 56788999999999999999752 3577664
No 143
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=68.26 E-value=3.1 Score=40.47 Aligned_cols=52 Identities=17% Similarity=0.558 Sum_probs=36.3
Q ss_pred cCccccccccccCCCCccceEEeeeec-----ceechHHHHHHHcCC--CCCCCCCCCcccccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEFQKY 151 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~~ 151 (153)
.+.|-+|+..-..++ +..-+|. --.|..|+.+|+... ..|-+|..+++|++.
T Consensus 12 ~~~CRICr~e~~~d~-----pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 12 KRSCRICRTEDIRDD-----PLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred chhceeecCCCCCCC-----cCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 356778886654332 2223343 237999999999975 459999999998874
No 144
>KOG1001|consensus
Probab=67.94 E-value=2.4 Score=40.07 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=34.3
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCCCCCCc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREW 146 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w 146 (153)
..|++|...- ..+.+.|+|.|...|+.+-++.. ..||+||..-
T Consensus 455 ~~c~ic~~~~--------~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCDLD--------SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccccc--------cceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 6789998721 55778999999999999988763 4599999753
No 145
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=67.60 E-value=7 Score=24.53 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=17.3
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-----CCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNRE 145 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-----~~CP~Cr~~ 145 (153)
.||+....+.. ++.-..|.|.-.++ +..||+.+ =.||+|.++
T Consensus 4 ~CPls~~~i~~------P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI------PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS------EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe------CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46666655422 55666688873322 33455442 259999864
No 146
>KOG1812|consensus
Probab=67.02 E-value=3.9 Score=36.01 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=38.9
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
-..||.|...++-..| |.-+.=+|||-|...|...|...+..|..|-+.
T Consensus 306 wr~CpkC~~~ie~~~G--Cnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~r~ 354 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEG--CNHMTCRCGHQFCYMCGGDWKTHNGECYECCRY 354 (384)
T ss_pred cCcCcccceeeeecCC--cceEEeeccccchhhcCcchhhCCccccCcccc
Confidence 3469999998855533 777766699999999999999998888776554
No 147
>KOG1829|consensus
Probab=66.94 E-value=1.5 Score=40.70 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=26.0
Q ss_pred eEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 151 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~ 151 (153)
...-..|+++||..|+.+= +..||.|-+-++.+.-
T Consensus 531 ~~rC~~C~avfH~~C~~r~---s~~CPrC~R~q~r~~~ 565 (580)
T KOG1829|consen 531 TRRCSTCLAVFHKKCLRRK---SPCCPRCERRQKRAEQ 565 (580)
T ss_pred ceeHHHHHHHHHHHHHhcc---CCCCCchHHHHHHhhc
Confidence 3445679999999997654 4459999887776543
No 148
>KOG3899|consensus
Probab=66.54 E-value=3 Score=36.09 Aligned_cols=29 Identities=14% Similarity=0.466 Sum_probs=21.8
Q ss_pred ecceechHHHHHHHc-------------CCCCCCCCCCCccc
Q psy16471 120 CNHAFHFHCISRWLK-------------TRQVCPLDNREWEF 148 (153)
Q Consensus 120 C~H~FH~~CI~~Wl~-------------~~~~CP~Cr~~w~~ 148 (153)
|.-.....|+.+|+- .+-+||+||+++=+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 555667889998874 34589999998754
No 149
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=63.09 E-value=4.1 Score=35.43 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=30.9
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHH-cCCCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNR 144 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~ 144 (153)
.||.|..-... +....-|+|.|...||..=| ...-.||.|.+
T Consensus 276 kCplc~~Llrn------p~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 276 KCPLCHCLLRN------PMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cCcchhhhhhC------cccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 48887765422 34456799999999999655 55678999965
No 150
>KOG3800|consensus
Probab=62.82 E-value=8.3 Score=33.10 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=35.8
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNRE 145 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~ 145 (153)
.||.|......++.- .....+|+|.....|++.-+..+ ..||-|...
T Consensus 2 ~Cp~CKt~~Y~np~l--k~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~i 49 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDL--KLMINECGHRLCESCVDRIFSLGPAQCPECMVI 49 (300)
T ss_pred CCcccccceecCccc--eeeeccccchHHHHHHHHHHhcCCCCCCcccch
Confidence 588888887655422 33445899999999999988775 579999754
No 151
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=62.27 E-value=1.6 Score=35.91 Aligned_cols=44 Identities=25% Similarity=0.485 Sum_probs=33.9
Q ss_pred cccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccc-cccCccccccccccC
Q psy16471 46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRN-HIMDLCIECQANQAS 107 (153)
Q Consensus 46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w-~~~~~CpiC~~~~~~ 107 (153)
.|.||+.++.. +|..+|+|.|---|..+- ...+.|.+|..+...
T Consensus 198 ~C~iCKkdy~s------------------pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 198 LCGICKKDYES------------------PVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred eehhchhhccc------------------hhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 79999999864 245579999988887555 477889999887643
No 152
>KOG0801|consensus
Probab=60.94 E-value=6.1 Score=31.54 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=42.7
Q ss_pred eeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccc-----cccCccccccccccCCCCc
Q psy16471 37 LWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRN-----HIMDLCIECQANQASTTSE 111 (153)
Q Consensus 37 ~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w-----~~~~~CpiC~~~~~~~~~~ 111 (153)
+.-|+...-.|+||..-+....++|-.- +| +.+.-++-. .-+..|.||+++...+.
T Consensus 131 ~hi~~~~g~KCPvC~K~V~sDd~e~Hlv--------------MC---LtkPrlsYNdDVL~ddkGECvICLEdL~~Gd-- 191 (205)
T KOG0801|consen 131 VHIMDHSGMKCPVCHKVVPSDDAEIHLV--------------MC---LTKPRLSYNDDVLKDDKGECVICLEDLEAGD-- 191 (205)
T ss_pred eeeeccCCccCCccccccCCCcceEEEE--------------EE---ecccccccccchhcccCCcEEEEhhhccCCC--
Confidence 4456666678999976554444443210 00 011111212 14567999999998876
Q ss_pred cceEEeeeecceech
Q psy16471 112 ECTVAWGVCNHAFHF 126 (153)
Q Consensus 112 ~c~~~~~~C~H~FH~ 126 (153)
.|..++|-=+||.
T Consensus 192 --tIARLPCLCIYHK 204 (205)
T KOG0801|consen 192 --TIARLPCLCIYHK 204 (205)
T ss_pred --ceeccceEEEeec
Confidence 8889999999986
No 153
>KOG3053|consensus
Probab=60.51 E-value=3.3 Score=35.12 Aligned_cols=27 Identities=30% Similarity=0.733 Sum_probs=21.9
Q ss_pred cceechHHHHHHHcCC--------CCCCCCCCCcc
Q psy16471 121 NHAFHFHCISRWLKTR--------QVCPLDNREWE 147 (153)
Q Consensus 121 ~H~FH~~CI~~Wl~~~--------~~CP~Cr~~w~ 147 (153)
.|--|..||.+|+..+ ..||-|+.+..
T Consensus 48 ~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 48 TKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4889999999999642 35999999864
No 154
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=59.30 E-value=3.4 Score=25.99 Aligned_cols=37 Identities=27% Similarity=0.594 Sum_probs=22.6
Q ss_pred Cccc--cccccccCC-CCccceEEeeeecceechHHHHHH
Q psy16471 96 DLCI--ECQANQAST-TSEECTVAWGVCNHAFHFHCISRW 132 (153)
Q Consensus 96 ~~Cp--iC~~~~~~~-~~~~c~~~~~~C~H~FH~~CI~~W 132 (153)
..|| -|...+... .++.-.+.-..|+|.|.+.|..+|
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 3466 666555333 122224444579999988888777
No 155
>KOG4275|consensus
Probab=57.12 E-value=2.3 Score=36.73 Aligned_cols=41 Identities=24% Similarity=0.565 Sum_probs=28.9
Q ss_pred cCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 146 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w 146 (153)
..+|.||.... .+| +.++|||. -.+.|-.+= +.||+||+..
T Consensus 300 ~~LC~ICmDaP-----~DC--vfLeCGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAP-----RDC--VFLECGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCC-----cce--EEeecCcEEeehhhcccc----ccCchHHHHH
Confidence 67899998663 233 56999997 456675432 3799999763
No 156
>KOG0311|consensus
Probab=55.96 E-value=0.91 Score=39.89 Aligned_cols=44 Identities=25% Similarity=0.514 Sum_probs=33.7
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccc
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQ 105 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~ 105 (153)
-.|+||+.-|..+ .-...|.|.|.+.||...+ .+..||-|++..
T Consensus 44 v~c~icl~llk~t-----------------mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 44 VICPICLSLLKKT-----------------MTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hccHHHHHHHHhh-----------------cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 4589997765431 1134599999999998886 899999999876
No 157
>KOG3842|consensus
Probab=55.43 E-value=6.8 Score=34.35 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=44.0
Q ss_pred ccceeccccccceeeeeccc-------cc-ccCccccccccc-------cCCCCccceEEeeeecceechHHHHHHHcC-
Q psy16471 72 ECTVAWGVCNHAFHFHCISR-------NH-IMDLCIECQANQ-------ASTTSEECTVAWGVCNHAFHFHCISRWLKT- 135 (153)
Q Consensus 72 ~c~~~~g~C~H~fh~~c~~~-------w~-~~~~CpiC~~~~-------~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~- 135 (153)
..+++|.+-.-.+|...... -+ .++.||+.+... .....+..+.+-+.|||+--.| .|=..
T Consensus 259 GATlLWRta~GL~~sPt~k~lE~~~~~iNA~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H---~WG~~e 335 (429)
T KOG3842|consen 259 GATLLWRTADGLEHSPTMKHLEALRQEINAARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH---NWGVRE 335 (429)
T ss_pred cceeEEecccccccCccHHHHHHHHHHHhccCCCCCcccceeecccccccccccccCCeEEEecccccccc---cccccc
Confidence 34667777666666655421 12 778899988554 1233344577889999984333 46432
Q ss_pred -----CCCCCCCCCC
Q psy16471 136 -----RQVCPLDNRE 145 (153)
Q Consensus 136 -----~~~CP~Cr~~ 145 (153)
...|||||..
T Consensus 336 ~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 336 NTGQRERECPMCRVV 350 (429)
T ss_pred ccCcccCcCCeeeee
Confidence 2469999954
No 158
>KOG0269|consensus
Probab=55.13 E-value=9.8 Score=36.66 Aligned_cols=24 Identities=25% Similarity=0.539 Sum_probs=21.7
Q ss_pred eeecceechHHHHHHHcCCCCCCC
Q psy16471 118 GVCNHAFHFHCISRWLKTRQVCPL 141 (153)
Q Consensus 118 ~~C~H~FH~~CI~~Wl~~~~~CP~ 141 (153)
..|||.=|..|+.+|+....-||.
T Consensus 797 ~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 797 QVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred ccccccccHHHHHHHHhcCCCCcc
Confidence 569999999999999999887877
No 159
>PHA02862 5L protein; Provisional
Probab=54.62 E-value=3.6 Score=32.06 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=30.9
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceecccc---ccceeeeeccccc---ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVC---NHAFHFHCISRNH---IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C---~H~fh~~c~~~w~---~~~~CpiC~~~~ 105 (153)
.|.|=||+++-++.--- | .| ..--|..|+.+|. .+..|++|+.+|
T Consensus 2 ~diCWIC~~~~~e~~~P------------C-----~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDERNNF------------C-----GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCCccc------------c-----cccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 47899998875442111 1 23 2344889999996 667899999998
No 160
>KOG2932|consensus
Probab=53.97 E-value=6.1 Score=34.49 Aligned_cols=28 Identities=25% Similarity=0.683 Sum_probs=21.3
Q ss_pred EeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 116 AWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 116 ~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
...+|.|+|.++|-.. ...+.||.|.-.
T Consensus 105 RmIPCkHvFCl~CAr~--~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARS--DSDKICPLCDDR 132 (389)
T ss_pred cccccchhhhhhhhhc--CccccCcCcccH
Confidence 4578999999999653 335689999754
No 161
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=53.59 E-value=7.7 Score=26.48 Aligned_cols=33 Identities=21% Similarity=0.521 Sum_probs=17.3
Q ss_pred eecccccccCccccccccccCCCCccceEEeeeec--ceechHH
Q psy16471 87 HCISRNHIMDLCIECQANQASTTSEECTVAWGVCN--HAFHFHC 128 (153)
Q Consensus 87 ~c~~~w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~--H~FH~~C 128 (153)
.|-......+.||-|.++. -++-.|| -.|..+|
T Consensus 22 ~C~~~~~~~a~CPdC~~~L---------e~LkACGAvdYFC~~c 56 (70)
T PF07191_consen 22 ACQKDYKKEAFCPDCGQPL---------EVLKACGAVDYFCNHC 56 (70)
T ss_dssp TT--EEEEEEE-TTT-SB----------EEEEETTEEEEE-TTT
T ss_pred cccccceecccCCCcccHH---------HHHHHhcccceeeccC
Confidence 4445566788899999885 3455676 3455444
No 162
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=53.19 E-value=7.7 Score=28.66 Aligned_cols=26 Identities=12% Similarity=0.283 Sum_probs=15.7
Q ss_pred CccccccccccCCCCccceEEeeeecce
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHA 123 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~ 123 (153)
+.||-|...|....++ ..+-+.|+|.
T Consensus 3 p~CP~C~seytY~dg~--~~iCpeC~~E 28 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGT--QLICPSCLYE 28 (109)
T ss_pred CcCCcCCCcceEecCC--eeECcccccc
Confidence 6788888887555433 4444555554
No 163
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=53.11 E-value=6.9 Score=24.96 Aligned_cols=28 Identities=21% Similarity=0.616 Sum_probs=22.1
Q ss_pred eee-cceechHHHHHHHcCCCCCCCCCCC
Q psy16471 118 GVC-NHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 118 ~~C-~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
..| .|-....|+..-|.....||+|..+
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~ 44 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDRCPICGKP 44 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSEETTTTEE
T ss_pred eeecchhHHHHHHHHHhccccCCCcccCc
Confidence 456 4999999999999999999999876
No 164
>PRK10220 hypothetical protein; Provisional
Probab=51.02 E-value=11 Score=28.01 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=11.9
Q ss_pred cCccccccccccCCCCc
Q psy16471 95 MDLCIECQANQASTTSE 111 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~ 111 (153)
.+.||.|...|....++
T Consensus 3 lP~CP~C~seytY~d~~ 19 (111)
T PRK10220 3 LPHCPKCNSEYTYEDNG 19 (111)
T ss_pred CCcCCCCCCcceEcCCC
Confidence 46788898888655433
No 165
>KOG0287|consensus
Probab=49.09 E-value=4 Score=36.06 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=35.1
Q ss_pred cccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471 46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~ 107 (153)
.|.||.+-|.-. +--.|+|.|-.-||...+ +.+.||.|+..+.+
T Consensus 25 RC~IC~eyf~ip------------------~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 25 RCGICFEYFNIP------------------MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHhHHHHHhcCc------------------eeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 699998877531 122499999999999997 89999999987744
No 166
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=48.61 E-value=18 Score=25.29 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=24.9
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~ 149 (153)
....|-||..++.....++-.+.--.|+-...+.|.+-=.+. ++.||-|+..++-.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 556789999988666556656667788888899998865554 67899999887643
No 167
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=47.92 E-value=13 Score=31.55 Aligned_cols=48 Identities=17% Similarity=0.327 Sum_probs=35.8
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCC--CCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCP--LDN 143 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP--~Cr 143 (153)
...||+|..+...+| +--..+-+.|-|-....|+++=+.+. .+|| -|.
T Consensus 10 d~~CPvCksDrYLnP-dik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 10 DRRCPVCKSDRYLNP-DIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred cccCCccccccccCC-CeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 357999999986664 22233445699999999999999886 4799 554
No 168
>KOG1701|consensus
Probab=47.58 E-value=16 Score=33.10 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=28.3
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHH
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCI 129 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI 129 (153)
..++|++|..++-..++.+..+.+..=.-.||.+|-
T Consensus 393 fAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv~CY 428 (468)
T KOG1701|consen 393 FAPRCSVCGNPILPRDGKDETVRVVAMDRDFHVNCY 428 (468)
T ss_pred cCcchhhccCCccCCCCCcceEEEEEccccccccce
Confidence 677899999999777777766666666788888874
No 169
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=47.20 E-value=6.3 Score=26.76 Aligned_cols=36 Identities=28% Similarity=0.729 Sum_probs=25.5
Q ss_pred ccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccc
Q psy16471 42 IVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRN 92 (153)
Q Consensus 42 ~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w 92 (153)
.....|.+|+.. .+.++.|..+ .|+..||+.|-.+-
T Consensus 34 ~~~~~C~~C~~~-~Ga~i~C~~~--------------~C~~~fH~~CA~~~ 69 (90)
T PF13771_consen 34 RRKLKCSICKKK-GGACIGCSHP--------------GCSRSFHVPCARKA 69 (90)
T ss_pred HhCCCCcCCCCC-CCeEEEEeCC--------------CCCcEEChHHHccC
Confidence 345789999877 3456777543 68888888887543
No 170
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=45.46 E-value=12 Score=23.00 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=23.8
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
|..|.+++..+ .++...=+..||..|+ +|-.|++...
T Consensus 1 C~~C~~~I~~~-----~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 37 (58)
T PF00412_consen 1 CARCGKPIYGT-----EIVIKAMGKFWHPECF--------KCSKCGKPLN 37 (58)
T ss_dssp BTTTSSBESSS-----SEEEEETTEEEETTTS--------BETTTTCBTT
T ss_pred CCCCCCCccCc-----EEEEEeCCcEEEcccc--------ccCCCCCccC
Confidence 55677777544 3343456789998886 4777776543
No 171
>PRK05978 hypothetical protein; Provisional
Probab=45.40 E-value=14 Score=28.62 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=16.5
Q ss_pred HHHcCCCCCCCCCCCcccc
Q psy16471 131 RWLKTRQVCPLDNREWEFQ 149 (153)
Q Consensus 131 ~Wl~~~~~CP~Cr~~w~~~ 149 (153)
.+|+.+.+||.|..++..+
T Consensus 47 g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 47 AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred cccccCCCccccCCccccC
Confidence 7889999999999988765
No 172
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=45.07 E-value=7.1 Score=34.90 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred cceeccccccceeeeecc--cc--cccCccccccccccCC------------CCccceEEeeeecceechHHHHHHHcC-
Q psy16471 73 CTVAWGVCNHAFHFHCIS--RN--HIMDLCIECQANQAST------------TSEECTVAWGVCNHAFHFHCISRWLKT- 135 (153)
Q Consensus 73 c~~~~g~C~H~fh~~c~~--~w--~~~~~CpiC~~~~~~~------------~~~~c~~~~~~C~H~FH~~CI~~Wl~~- 135 (153)
=+=|+-.|+|.+=.|--. +- .....||+|+..-... +.+.=.-+..+|||+-=..-..-|-+.
T Consensus 302 qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~ 381 (416)
T PF04710_consen 302 QPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIP 381 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeeccccceeeecccccccccccccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCC
Confidence 344566688765333211 11 1477899999654211 000002255789999988899999875
Q ss_pred --------CCCCCCCCCCcc
Q psy16471 136 --------RQVCPLDNREWE 147 (153)
Q Consensus 136 --------~~~CP~Cr~~w~ 147 (153)
+..||.|-.+-.
T Consensus 382 lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 382 LPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------
T ss_pred CCCCcccccccCCcccCccc
Confidence 357999987643
No 173
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=44.94 E-value=12 Score=25.30 Aligned_cols=13 Identities=31% Similarity=1.030 Sum_probs=9.3
Q ss_pred eechHHHHHHHcC
Q psy16471 123 AFHFHCISRWLKT 135 (153)
Q Consensus 123 ~FH~~CI~~Wl~~ 135 (153)
.|.+.||++|++.
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999999863
No 174
>KOG1940|consensus
Probab=44.73 E-value=6.8 Score=33.29 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.1
Q ss_pred ccccccceeeeeccccc-ccCccccccc
Q psy16471 77 WGVCNHAFHFHCISRNH-IMDLCIECQA 103 (153)
Q Consensus 77 ~g~C~H~fh~~c~~~w~-~~~~CpiC~~ 103 (153)
.+.|+|..|+.|+..-. ..-+||+|..
T Consensus 177 ~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 177 VLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCcccchHHHHHHHHhccCCCCCcccc
Confidence 56799999999998875 4489999998
No 175
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=43.59 E-value=6.6 Score=32.85 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=21.1
Q ss_pred cCccccccccccCCCCccceEEe----eeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAW----GVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~----~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
+..||+|...-.-. .+.. |. .|.++.-|-.+|--.+..||.|-..
T Consensus 172 ~g~CPvCGs~P~~s-----~l~~~~~~G~-R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLS-----VLRGGEREGK-RYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEE-----EEE------E-EEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceE-----EEecCCCCcc-EEEEcCCCCCeeeecCCCCcCCCCC
Confidence 57899998764221 1111 23 6777888999998888999999754
No 176
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=43.41 E-value=13 Score=32.95 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=8.7
Q ss_pred Ccccccccccccc
Q psy16471 44 VDNCAICRNHIMD 56 (153)
Q Consensus 44 ~d~C~IC~~~~~d 56 (153)
+|.|+.|.++|+-
T Consensus 14 ed~cplcie~mdi 26 (480)
T COG5175 14 EDYCPLCIEPMDI 26 (480)
T ss_pred cccCccccccccc
Confidence 4667777777654
No 177
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=43.41 E-value=13 Score=26.18 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=7.4
Q ss_pred ecceechHHHHH
Q psy16471 120 CNHAFHFHCISR 131 (153)
Q Consensus 120 C~H~FH~~CI~~ 131 (153)
|...||..|..+
T Consensus 76 C~~~fH~~CA~~ 87 (110)
T PF13832_consen 76 CSTAFHPTCARK 87 (110)
T ss_pred CCcCCCHHHHHH
Confidence 556666666644
No 178
>KOG3002|consensus
Probab=43.38 E-value=13 Score=31.85 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=27.3
Q ss_pred CccccccccccCCCCccceEEeeee--cceechHHHHHHHcCCCCCCCCCCCc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREW 146 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C--~H~FH~~CI~~Wl~~~~~CP~Cr~~w 146 (153)
-.||+|...+ .+-...| ||.-...|=. +..+.||.||.+.
T Consensus 49 leCPvC~~~l--------~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~ 90 (299)
T KOG3002|consen 49 LDCPVCFNPL--------SPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPI 90 (299)
T ss_pred ccCchhhccC--------cccceecCCCcEehhhhhh---hhcccCCcccccc
Confidence 3589999887 3334556 4666665554 5578899999774
No 179
>KOG0298|consensus
Probab=42.82 E-value=7.5 Score=39.45 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=35.7
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
...|++|+....... ....|||.|...|+.-|++.+..||+|...
T Consensus 1153 ~~~c~ic~dil~~~~------~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG------GIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred ccchHHHHHHHHhcC------CeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 447888887764221 335699999999999999999999999854
No 180
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=41.95 E-value=17 Score=19.99 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=20.4
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
|+.|.+.+... ......=+..||.+|+. |..|+..
T Consensus 2 C~~C~~~i~~~-----~~~~~~~~~~~H~~Cf~--------C~~C~~~ 36 (39)
T smart00132 2 CAGCGKPIRGG-----ELVLRALGKVWHPECFK--------CSKCGKP 36 (39)
T ss_pred ccccCCcccCC-----cEEEEeCCccccccCCC--------CcccCCc
Confidence 66677776443 12222337889988863 6666544
No 181
>KOG4577|consensus
Probab=41.81 E-value=4.3 Score=35.12 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=22.0
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHH
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCIS 130 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~ 130 (153)
...|+.|...+... .++...=.|+||.+|+.
T Consensus 92 GTKCsaC~~GIpPt-----qVVRkAqd~VYHl~CF~ 122 (383)
T KOG4577|consen 92 GTKCSACQEGIPPT-----QVVRKAQDFVYHLHCFA 122 (383)
T ss_pred CCcchhhcCCCChH-----HHHHHhhcceeehhhhh
Confidence 44588888777444 44555567999999986
No 182
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.49 E-value=16 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=12.9
Q ss_pred eecceechHHHHHHHcCCCCCCCCCCC
Q psy16471 119 VCNHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 119 ~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
.|||+|-..- ....||+|.++
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCCc
Confidence 4666654432 34479999864
No 183
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=40.52 E-value=16 Score=26.73 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=17.5
Q ss_pred ccccCccccccccccCCCCccceEEeeeecceec
Q psy16471 92 NHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 125 (153)
Q Consensus 92 w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH 125 (153)
|=.++.||.|..-|...... +++.+.||..|.
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~--PivCP~CG~~~~ 37 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKD--PIVCPKCGTEFP 37 (108)
T ss_pred cCCcccCCCCcchhccCCCC--CccCCCCCCccC
Confidence 33577888888777444322 444444444443
No 184
>KOG0978|consensus
Probab=39.54 E-value=8.2 Score=36.79 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=25.3
Q ss_pred ccccceeeeeccccc--ccCccccccccccCC
Q psy16471 79 VCNHAFHFHCISRNH--IMDLCIECQANQAST 108 (153)
Q Consensus 79 ~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~ 108 (153)
.|+|.|-..|+.+-. -...||.|-.+|..+
T Consensus 660 kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 660 KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 599999999997775 666899999999554
No 185
>KOG0297|consensus
Probab=39.29 E-value=18 Score=31.85 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=34.7
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
-.|+||...+.+.-. .-.|+|+|-..|+..|. ....||.|+...
T Consensus 22 l~C~~C~~vl~~p~~-----------------~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQ-----------------TTTCGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred ccCccccccccCCCC-----------------CCCCCCcccccccchhhccCcCCccccccc
Confidence 579999888876311 12699999999999998 558999997666
No 186
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.00 E-value=17 Score=25.64 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=8.0
Q ss_pred CCCCCCCCcc
Q psy16471 138 VCPLDNREWE 147 (153)
Q Consensus 138 ~CP~Cr~~w~ 147 (153)
.||-||.-|.
T Consensus 23 ~CPrCrGVWL 32 (88)
T COG3809 23 YCPRCRGVWL 32 (88)
T ss_pred eCCccccEee
Confidence 5888888885
No 187
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=38.86 E-value=9.9 Score=23.87 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=5.7
Q ss_pred CCCCCCCCCcc
Q psy16471 137 QVCPLDNREWE 147 (153)
Q Consensus 137 ~~CP~Cr~~w~ 147 (153)
+.||+|.+++.
T Consensus 21 ~~CPlC~r~l~ 31 (54)
T PF04423_consen 21 GCCPLCGRPLD 31 (54)
T ss_dssp EE-TTT--EE-
T ss_pred CcCCCCCCCCC
Confidence 48999999865
No 188
>KOG1100|consensus
Probab=38.48 E-value=19 Score=29.19 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=21.4
Q ss_pred eEEeeeecce-echHHHHHHHcCCCCCCCCCCC
Q psy16471 114 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 114 ~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
.+.+++|.|. +...|=.. -.+||+|+..
T Consensus 170 ~VlllPCrHl~lC~~C~~~----~~~CPiC~~~ 198 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES----LRICPICRSP 198 (207)
T ss_pred eEEeecccceEeccccccc----CccCCCCcCh
Confidence 5788999886 66778765 3459999976
No 189
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.33 E-value=50 Score=21.68 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=32.0
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
++.|-.|.+++...+.+ -.|..- --.|..+|.+.-| ++.||.|..+..
T Consensus 5 rpnCE~C~~dLp~~s~~-A~ICSf--ECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPE-AYICSF--ECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCCccccCCCCCCCCCc-ceEEeE--eCcccHHHHHHHh--cCcCcCCCCccc
Confidence 45667777777554322 123222 2469999999987 778999998854
No 190
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=35.48 E-value=20 Score=23.64 Aligned_cols=12 Identities=33% Similarity=0.575 Sum_probs=9.9
Q ss_pred CCCCCCCCCCcc
Q psy16471 136 RQVCPLDNREWE 147 (153)
Q Consensus 136 ~~~CP~Cr~~w~ 147 (153)
.++||+|.++..
T Consensus 39 ~p~CPlC~s~M~ 50 (59)
T PF14169_consen 39 EPVCPLCKSPMV 50 (59)
T ss_pred CccCCCcCCccc
Confidence 478999998865
No 191
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=33.57 E-value=15 Score=33.33 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=18.8
Q ss_pred HHHHHcCC---CCCCCCC-CCcccccc
Q psy16471 129 ISRWLKTR---QVCPLDN-REWEFQKY 151 (153)
Q Consensus 129 I~~Wl~~~---~~CP~Cr-~~w~~~~~ 151 (153)
-.+||+++ ..||-|| .+|+++||
T Consensus 55 ~~r~~r~~~~~~~c~~c~~~~~~~~~~ 81 (453)
T TIGR02367 55 TARAFRHHKYRKTCKRCRVSDEDINKF 81 (453)
T ss_pred HHHHHhhccccccCCCCCCCHHHHHHH
Confidence 36899885 6899999 67988886
No 192
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.34 E-value=59 Score=20.89 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=27.8
Q ss_pred eeeecccccccCccccccccccCCCCccceEEeeeecceechHHH
Q psy16471 85 HFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCI 129 (153)
Q Consensus 85 h~~c~~~w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI 129 (153)
.+..+.++.+...||.|.........+ -...-..||+.+|.+=.
T Consensus 18 ~v~~v~~~~TSq~C~~CG~~~~~~~~~-r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 18 QVVEVDEAYTSQTCPRCGHRNKKRRSG-RVFTCPNCGFEMDRDVN 61 (69)
T ss_pred EEEEECCCCCccCccCccccccccccc-ceEEcCCCCCEECcHHH
Confidence 344556666778899998777552222 13344568998887743
No 193
>KOG3113|consensus
Probab=32.86 E-value=53 Score=27.97 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=36.1
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~ 150 (153)
..-.||+=.-.++.. .-..++-.|||+|-..=+.+-- ..+|++|.+.++...
T Consensus 110 a~fiCPvtgleMng~---~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGK---YRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecce---EEEEEEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence 344688877666332 2244567799999988777653 567999999977543
No 194
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=32.81 E-value=18 Score=20.65 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=2.9
Q ss_pred CccccccccccC
Q psy16471 96 DLCIECQANQAS 107 (153)
Q Consensus 96 ~~CpiC~~~~~~ 107 (153)
+.||.|...+..
T Consensus 3 p~Cp~C~se~~y 14 (30)
T PF08274_consen 3 PKCPLCGSEYTY 14 (30)
T ss_dssp ---TTT-----E
T ss_pred CCCCCCCCccee
Confidence 568888877744
No 195
>KOG1039|consensus
Probab=31.74 E-value=14 Score=32.30 Aligned_cols=52 Identities=23% Similarity=0.519 Sum_probs=35.8
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--------ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--------IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--------~~~~CpiC~~~~ 105 (153)
+.+|+||.+.+.+.-.. ..- -. .--.|+|+|-+.||.+|. ....||+|+...
T Consensus 161 ~k~CGICme~i~ek~~~-~~r-----fg----ilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 161 EKECGICMETINEKAAS-ERR-----FG----ILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccceehhhhccccchh-hhh-----cc----cCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 67899998888763200 000 00 013599999999999996 257899999765
No 196
>KOG2979|consensus
Probab=30.10 E-value=22 Score=30.00 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=31.5
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDN 143 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr 143 (153)
..+||+-.+++.. +++...|||+|-++=|.+.+.- .-.||+=.
T Consensus 176 s~rdPis~~~I~n------PviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVN------PVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhc------hhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 3456766666533 5677889999999999999976 44588743
No 197
>KOG1941|consensus
Probab=30.02 E-value=8.3 Score=34.73 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=21.8
Q ss_pred ccccceeeeeccccc---ccCccccccccc
Q psy16471 79 VCNHAFHFHCISRNH---IMDLCIECQANQ 105 (153)
Q Consensus 79 ~C~H~fh~~c~~~w~---~~~~CpiC~~~~ 105 (153)
.|.|-||.+|..+.+ ....||.|+.-.
T Consensus 386 pCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 386 PCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred chhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 499999999997664 777899999443
No 198
>KOG1785|consensus
Probab=29.94 E-value=17 Score=32.98 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=43.1
Q ss_pred cceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCcccc
Q psy16471 24 KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIE 100 (153)
Q Consensus 24 ~~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~Cpi 100 (153)
..+++|.+=+.--.|--..--+.|-||-++-.|--|+ -|||..-.-|+..|. ....||.
T Consensus 349 ~d~i~VtqEQyeLYceMgsTFeLCKICaendKdvkIE------------------PCGHLlCt~CLa~WQ~sd~gq~CPF 410 (563)
T KOG1785|consen 349 QDRIKVTQEQYELYCEMGSTFELCKICAENDKDVKIE------------------PCGHLLCTSCLAAWQDSDEGQTCPF 410 (563)
T ss_pred ccceeeeHHHHHHHHHccchHHHHHHhhccCCCcccc------------------cccchHHHHHHHhhcccCCCCCCCc
Confidence 4455555433322222223346788887765553332 499999999999996 4678999
Q ss_pred ccccccCC
Q psy16471 101 CQANQAST 108 (153)
Q Consensus 101 C~~~~~~~ 108 (153)
||..+...
T Consensus 411 CRcEIKGt 418 (563)
T KOG1785|consen 411 CRCEIKGT 418 (563)
T ss_pred eeeEeccc
Confidence 99888544
No 199
>KOG1609|consensus
Probab=29.71 E-value=28 Score=28.55 Aligned_cols=26 Identities=15% Similarity=0.503 Sum_probs=21.1
Q ss_pred ceechHHHHHHHcC--CCCCCCCCCCcc
Q psy16471 122 HAFHFHCISRWLKT--RQVCPLDNREWE 147 (153)
Q Consensus 122 H~FH~~CI~~Wl~~--~~~CP~Cr~~w~ 147 (153)
...|..|+++|+.. +.+|.+|.....
T Consensus 107 ~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 107 AYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred HHHHHHHHHhhhccccCeeeecccccce
Confidence 45699999999985 567999987654
No 200
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=28.12 E-value=50 Score=29.05 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=36.7
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC---CCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~---~CP~Cr~~w~~~ 149 (153)
+--.||+=.....+.. +++.+.|||+.-..=+++--+... .||.|-..=+++
T Consensus 335 s~FiCPVlKe~~t~EN----pP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~ 389 (396)
T COG5109 335 SLFICPVLKELCTDEN----PPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYE 389 (396)
T ss_pred ceeeccccHhhhcccC----CCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhh
Confidence 4456887665553333 789999999999999888766643 499996554443
No 201
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=27.78 E-value=24 Score=25.42 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=16.5
Q ss_pred eeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 118 GVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 118 ~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
-.||-.|-.+ =++.-+.||.|.++|=
T Consensus 62 kkCGfef~~~----~ik~pSRCP~CKSE~I 87 (97)
T COG3357 62 KKCGFEFRDD----KIKKPSRCPKCKSEWI 87 (97)
T ss_pred cccCcccccc----ccCCcccCCcchhhcc
Confidence 3466666541 2233467999999984
No 202
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=27.00 E-value=42 Score=21.41 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=15.7
Q ss_pred eEEeeeecceechHHHHHHHcCCCCCCCCC
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr 143 (153)
.-.-.+|++.|..+|=.===++-.+||-|.
T Consensus 21 ~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 21 RYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp EE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred eEECCCCCCccccCcChhhhccccCCcCCC
Confidence 445578999999999543334456788874
No 203
>PF10071 DUF2310: Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310); InterPro: IPR016908 This group represents uncharacterised conserved proteins.
Probab=26.70 E-value=35 Score=28.76 Aligned_cols=16 Identities=19% Similarity=0.652 Sum_probs=13.5
Q ss_pred CCCCCCCCCCcccccc
Q psy16471 136 RQVCPLDNREWEFQKY 151 (153)
Q Consensus 136 ~~~CP~Cr~~w~~~~~ 151 (153)
...||.|.++|++++.
T Consensus 220 ~r~CP~Cg~~W~L~~p 235 (258)
T PF10071_consen 220 ARKCPSCGGDWRLKEP 235 (258)
T ss_pred CCCCCCCCCccccCCc
Confidence 5679999999998764
No 204
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.22 E-value=35 Score=25.91 Aligned_cols=33 Identities=6% Similarity=-0.019 Sum_probs=19.1
Q ss_pred ccccCccccccccccCCCCccceEEeeeecceech
Q psy16471 92 NHIMDLCIECQANQASTTSEECTVAWGVCNHAFHF 126 (153)
Q Consensus 92 w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~ 126 (153)
|-.++.||.|..-|...... +++.+.||..|..
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~--p~vcP~cg~~~~~ 38 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRR--PAVSPYTGEQFPP 38 (129)
T ss_pred hCccccCCCcCccccccCCC--CccCCCcCCccCc
Confidence 44677888888777443322 4555555555543
No 205
>KOG2879|consensus
Probab=25.52 E-value=40 Score=28.90 Aligned_cols=31 Identities=26% Similarity=0.600 Sum_probs=24.5
Q ss_pred eccccccceeeeeccccc---ccCcccccccccc
Q psy16471 76 AWGVCNHAFHFHCISRNH---IMDLCIECQANQA 106 (153)
Q Consensus 76 ~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~~ 106 (153)
+.|.|+|.|-.-|+.... ..-.||.|..+..
T Consensus 254 ~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 254 VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 456799999999997664 4568999998864
No 206
>KOG1812|consensus
Probab=25.25 E-value=24 Score=31.13 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=27.2
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR 136 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~ 136 (153)
....|.+|......... ......|+|-|..+|+.+.++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~---~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAED---MFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhh---hHHHhcccchhhhHHhHHHhhhh
Confidence 35578899844422210 11257899999999999999853
No 207
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=24.71 E-value=8.4 Score=24.04 Aligned_cols=37 Identities=22% Similarity=0.537 Sum_probs=17.4
Q ss_pred Ccccc--ccccccCCCCccce-EEeeeecceechHHHHHH
Q psy16471 96 DLCIE--CQANQASTTSEECT-VAWGVCNHAFHFHCISRW 132 (153)
Q Consensus 96 ~~Cpi--C~~~~~~~~~~~c~-~~~~~C~H~FH~~CI~~W 132 (153)
..||- |...+....+..-. +.-..|++.|...|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 35666 77666444433332 344558888877666555
No 208
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.66 E-value=71 Score=19.01 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=17.2
Q ss_pred ccccceeeee-cccccccCccccccc
Q psy16471 79 VCNHAFHFHC-ISRNHIMDLCIECQA 103 (153)
Q Consensus 79 ~C~H~fh~~c-~~~w~~~~~CpiC~~ 103 (153)
.|+|.|-... ++. .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 4788886643 344 67888999987
No 209
>PF15616 TerY-C: TerY-C metal binding domain
Probab=24.60 E-value=36 Score=25.86 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=30.1
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~ 149 (153)
..+.||-|...+ ..+.-.||.+|. |+. ....+||-|.+.=.|.
T Consensus 76 g~PgCP~CGn~~--------~fa~C~CGkl~C---i~g--~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 76 GAPGCPHCGNQY--------AFAVCGCGKLFC---IDG--EGEVTCPWCGNEGSFG 118 (131)
T ss_pred CCCCCCCCcChh--------cEEEecCCCEEE---eCC--CCCEECCCCCCeeeec
Confidence 347899999887 556668999875 333 3356899998765543
No 210
>KOG4021|consensus
Probab=24.12 E-value=47 Score=27.25 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=19.1
Q ss_pred hHHHHHHHc-CCCCCCCCCCCcccccc
Q psy16471 126 FHCISRWLK-TRQVCPLDNREWEFQKY 151 (153)
Q Consensus 126 ~~CI~~Wl~-~~~~CP~Cr~~w~~~~~ 151 (153)
..||.+--. .++-||+||-+..+-.|
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL~~Dy 123 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYLYFDY 123 (239)
T ss_pred hHHHhhcCeecCCCCCccccceEEEec
Confidence 468887665 46679999988766554
No 211
>KOG4159|consensus
Probab=23.82 E-value=23 Score=31.65 Aligned_cols=29 Identities=24% Similarity=0.638 Sum_probs=24.6
Q ss_pred ccccceeeeeccccc-ccCccccccccccC
Q psy16471 79 VCNHAFHFHCISRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 79 ~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~ 107 (153)
.|+|+|-.+|+.+-+ ....||.|+.++..
T Consensus 101 pcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 101 PCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccccccHHHHHHHhccCCCCccccccccc
Confidence 699999999988875 78889999988743
No 212
>PLN02189 cellulose synthase
Probab=23.64 E-value=91 Score=31.33 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=42.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~~ 150 (153)
....|.||..++.....++=-++...|+--.++.|.+-=.+. ++.||-|+..++-.|
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 445799999998665556656777889999999999433332 678999999877444
No 213
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=23.23 E-value=48 Score=18.91 Aligned_cols=9 Identities=22% Similarity=0.744 Sum_probs=5.6
Q ss_pred ccccccccc
Q psy16471 97 LCIECQANQ 105 (153)
Q Consensus 97 ~CpiC~~~~ 105 (153)
.||.|.+.+
T Consensus 4 ~CP~C~~~~ 12 (38)
T TIGR02098 4 QCPNCKTSF 12 (38)
T ss_pred ECCCCCCEE
Confidence 466666655
No 214
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=22.82 E-value=18 Score=19.43 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.3
Q ss_pred CCCCCCCCcccc
Q psy16471 138 VCPLDNREWEFQ 149 (153)
Q Consensus 138 ~CP~Cr~~w~~~ 149 (153)
.||+|.+.|...
T Consensus 4 ~C~~CgR~F~~~ 15 (25)
T PF13913_consen 4 PCPICGRKFNPD 15 (25)
T ss_pred cCCCCCCEECHH
Confidence 599999887644
No 215
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.79 E-value=87 Score=23.19 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=36.2
Q ss_pred cCccccccccccCCCC-------ccceEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTS-------EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 144 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~-------~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 144 (153)
...|-.|+..+...+. +.-.-.-..|++.|..+|=.=+-++-.+||-|..
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 3469999998865321 1112335789999999998888888788999964
No 216
>KOG1512|consensus
Probab=22.70 E-value=33 Score=29.80 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=37.8
Q ss_pred cccccceeeeec------------cccc--ccCccccccccccCCCCccceEEeeeecceechHHHH
Q psy16471 78 GVCNHAFHFHCI------------SRNH--IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCIS 130 (153)
Q Consensus 78 g~C~H~fh~~c~------------~~w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~ 130 (153)
..|..+.|--|+ -.|. .=.+|.||.++..+. ..++...|-..||.-|+-
T Consensus 283 ~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~----E~~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 283 KPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIES----EHLFCDVCDRGPHTLCVG 345 (381)
T ss_pred cccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccch----heeccccccCCCCccccc
Confidence 457778888887 4565 567899999998443 377788899999999974
No 217
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.30 E-value=97 Score=31.26 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=41.8
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w~~~ 149 (153)
....|-||..++.....++=-++...|+=--++.|.+ .=+. ++.||-|+..++-.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchhhh
Confidence 4457899999986666666677788899899999994 4333 67899999987743
No 218
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.76 E-value=62 Score=17.69 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=9.4
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHH
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCI 129 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI 129 (153)
.|-+|..+...+. .-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~----~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGW----FYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCc----eEECccCCCccChhcC
Confidence 3556666654321 3344678888898885
No 219
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=21.70 E-value=44 Score=23.76 Aligned_cols=80 Identities=18% Similarity=0.389 Sum_probs=21.6
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-----ccCccccccccccCCCCccce-EEe
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-----IMDLCIECQANQASTTSEECT-VAW 117 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-----~~~~CpiC~~~~~~~~~~~c~-~~~ 117 (153)
.+.|.||...+.-.... .-.| .-||.| .+|....+ ....|++|...+-....++-. ..+
T Consensus 14 ~E~C~~C~~~i~~~~~~---------~~~C-----~~GH~w-~RC~lT~l~i~~~~~r~C~~C~~~~l~~~~~~~~~~~~ 78 (99)
T PF12660_consen 14 FEKCPICGAPIPFDDLD---------EAQC-----ENGHVW-PRCALTFLPIQTPGVRVCPVCGRRALDPEPEDPNEYGW 78 (99)
T ss_dssp ---------------SS---------EEE------TTS-EE-EB-SSS-SBS-SS-EEE-TTT--EEE-GGG-SSS---H
T ss_pred cccccccccccccCCcC---------EeEC-----CCCCEE-eeeeeeeeeeccCCeeEcCCCCCEEecCcccccccccc
Confidence 38899998876422111 0011 235553 34443332 337899998776222111111 011
Q ss_pred eeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 118 GVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 118 ~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
+. +..-+.....|..|..+|+
T Consensus 79 ~~---------~~~Ll~~~d~CiyCGgkf~ 99 (99)
T PF12660_consen 79 LT---------VTILLESFDVCIYCGGKFQ 99 (99)
T ss_dssp HH---------HHHHHHTSSB-TTT--B--
T ss_pred hh---------HHHHHhCCCEEeCCCCCcC
Confidence 11 4444455678999988763
No 220
>KOG4362|consensus
Probab=20.90 E-value=26 Score=33.39 Aligned_cols=45 Identities=18% Similarity=0.454 Sum_probs=34.8
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC---CCCCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNRE 145 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~ 145 (153)
.-..||||...+... ..+.|.|.|-..|+..=|.. ..+||+|++.
T Consensus 20 k~lEc~ic~~~~~~p-------~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 20 KILECPICLEHVKEP-------SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred hhccCCceeEEeecc-------chhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence 345689999887443 56889999999999886654 4579999965
No 221
>KOG0956|consensus
Probab=20.64 E-value=43 Score=32.38 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=10.2
Q ss_pred ccCccccccccccc
Q psy16471 42 IVVDNCAICRNHIM 55 (153)
Q Consensus 42 ~~~d~C~IC~~~~~ 55 (153)
.+..+|-||.+...
T Consensus 115 RfnKtCYIC~E~Gr 128 (900)
T KOG0956|consen 115 RFNKTCYICNEEGR 128 (900)
T ss_pred hhcceeeeecccCC
Confidence 34568999988754
Done!