Query psy16471
Match_columns 153
No_of_seqs 148 out of 1742
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 22:12:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dpl_R Ring-box protein 1; ubi 100.0 7.5E-31 2.5E-35 190.2 8.3 95 19-153 12-106 (106)
2 4a0k_B E3 ubiquitin-protein li 100.0 6.5E-31 2.2E-35 194.0 3.4 96 18-153 22-117 (117)
3 2ecl_A Ring-box protein 2; RNF 99.9 5E-25 1.7E-29 151.3 3.0 80 31-153 2-81 (81)
4 4ap4_A E3 ubiquitin ligase RNF 99.7 6.4E-18 2.2E-22 122.2 3.8 97 43-150 6-127 (133)
5 1v87_A Deltex protein 2; ring- 99.5 2.2E-14 7.4E-19 102.5 5.3 36 114-149 55-95 (114)
6 1iym_A EL5; ring-H2 finger, ub 99.4 5.2E-14 1.8E-18 88.3 3.8 50 95-147 5-54 (55)
7 2kiz_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 90.6 4.7 53 94-150 13-65 (69)
8 2ct0_A Non-SMC element 1 homol 99.4 1.1E-13 3.6E-18 94.3 3.8 51 94-150 14-66 (74)
9 1x4j_A Ring finger protein 38; 99.4 1.2E-13 4.3E-18 92.0 3.7 51 94-148 22-72 (75)
10 2ect_A Ring finger protein 126 99.4 1.7E-13 5.9E-18 91.7 4.3 54 94-151 14-67 (78)
11 2l0b_A E3 ubiquitin-protein li 99.4 2E-13 7E-18 94.7 4.2 49 95-147 40-88 (91)
12 2ep4_A Ring finger protein 24; 99.4 2.3E-13 7.9E-18 90.2 4.2 50 94-147 14-63 (74)
13 3ng2_A RNF4, snurf, ring finge 99.4 2.1E-13 7.1E-18 89.4 2.4 58 94-151 9-66 (71)
14 2ecm_A Ring finger and CHY zin 99.3 5.5E-13 1.9E-17 83.4 4.0 49 95-146 5-53 (55)
15 2ea6_A Ring finger protein 4; 99.3 4.3E-13 1.5E-17 87.1 3.0 54 94-147 14-67 (69)
16 2xeu_A Ring finger protein 4; 99.3 3E-13 1E-17 86.6 1.5 56 95-150 3-58 (64)
17 1chc_A Equine herpes virus-1 r 99.3 1.1E-12 3.7E-17 85.5 3.4 45 97-147 7-51 (68)
18 2d8t_A Dactylidin, ring finger 99.2 5.3E-12 1.8E-16 83.3 2.9 50 94-150 14-63 (71)
19 2djb_A Polycomb group ring fin 99.2 8.8E-12 3E-16 82.4 4.0 51 94-150 14-64 (72)
20 2d8s_A Cellular modulator of i 99.2 7.5E-12 2.6E-16 85.9 2.9 52 94-150 14-72 (80)
21 2ct2_A Tripartite motif protei 99.1 3E-11 1E-15 81.8 4.4 53 94-149 14-69 (88)
22 4a0k_B E3 ubiquitin-protein li 99.1 1.1E-11 3.7E-16 91.0 1.9 80 16-107 26-112 (117)
23 2ysl_A Tripartite motif-contai 99.1 3.5E-11 1.2E-15 79.1 4.2 51 94-151 19-72 (73)
24 2ecn_A Ring finger protein 141 99.1 1.1E-11 3.8E-16 81.2 1.3 47 94-148 14-60 (70)
25 4ap4_A E3 ubiquitin ligase RNF 99.1 1.7E-11 5.9E-16 88.2 1.8 55 95-149 7-61 (133)
26 2ecy_A TNF receptor-associated 99.1 4.6E-11 1.6E-15 77.6 3.5 50 94-150 14-64 (66)
27 3lrq_A E3 ubiquitin-protein li 99.1 5.5E-11 1.9E-15 83.7 3.8 51 94-150 21-72 (100)
28 4ayc_A E3 ubiquitin-protein li 99.1 5E-11 1.7E-15 88.3 3.7 46 96-148 54-99 (138)
29 3dpl_R Ring-box protein 1; ubi 99.1 1.8E-11 6.1E-16 88.1 1.0 92 3-106 2-100 (106)
30 2y43_A E3 ubiquitin-protein li 99.1 9.5E-11 3.2E-15 81.7 4.4 48 95-148 22-69 (99)
31 2yur_A Retinoblastoma-binding 99.0 1.2E-10 4.1E-15 77.5 3.9 47 94-147 14-63 (74)
32 2csy_A Zinc finger protein 183 99.0 9E-11 3.1E-15 79.1 3.3 46 95-147 15-60 (81)
33 1t1h_A Gspef-atpub14, armadill 99.0 1.7E-10 5.9E-15 76.9 4.0 48 95-149 8-56 (78)
34 2ecw_A Tripartite motif-contai 99.0 2.4E-10 8.2E-15 76.4 3.8 49 94-149 18-72 (85)
35 2ckl_A Polycomb group ring fin 99.0 2.8E-10 9.6E-15 80.6 4.3 49 94-148 14-62 (108)
36 1g25_A CDK-activating kinase a 99.0 2.6E-10 8.9E-15 73.8 3.6 36 115-150 21-57 (65)
37 2ecv_A Tripartite motif-contai 99.0 3.2E-10 1.1E-14 75.8 3.6 50 94-150 18-73 (85)
38 2ecl_A Ring-box protein 2; RNF 99.0 3.3E-11 1.1E-15 82.0 -1.6 66 27-106 4-75 (81)
39 2egp_A Tripartite motif-contai 98.9 1.3E-10 4.3E-15 77.4 1.0 49 94-149 11-66 (79)
40 2ysj_A Tripartite motif-contai 98.9 5.9E-10 2E-14 71.5 4.0 42 94-142 19-63 (63)
41 2ckl_B Ubiquitin ligase protei 98.9 7.3E-10 2.5E-14 83.9 4.2 47 95-147 54-101 (165)
42 2ecj_A Tripartite motif-contai 98.9 7E-10 2.4E-14 69.6 3.2 42 94-142 14-58 (58)
43 3fl2_A E3 ubiquitin-protein li 98.9 8.8E-10 3E-14 79.8 3.6 47 95-148 52-99 (124)
44 1jm7_A BRCA1, breast cancer ty 98.9 9.5E-10 3.2E-14 77.6 3.5 48 95-149 21-71 (112)
45 1rmd_A RAG1; V(D)J recombinati 98.8 1.4E-09 4.9E-14 77.7 3.6 50 94-150 22-72 (116)
46 3ztg_A E3 ubiquitin-protein li 98.8 2.4E-09 8.1E-14 73.4 3.3 45 95-146 13-60 (92)
47 3hct_A TNF receptor-associated 98.8 2E-09 6.9E-14 77.4 2.9 49 94-149 17-66 (118)
48 1z6u_A NP95-like ring finger p 98.8 4.3E-09 1.5E-13 79.4 3.7 49 94-149 77-126 (150)
49 3l11_A E3 ubiquitin-protein li 98.7 2.3E-09 7.7E-14 76.6 1.6 46 95-147 15-61 (115)
50 2vje_A E3 ubiquitin-protein li 98.7 1.5E-08 5.1E-13 66.0 4.4 49 94-147 7-56 (64)
51 2ct0_A Non-SMC element 1 homol 98.7 5.2E-09 1.8E-13 71.0 2.0 51 43-110 14-67 (74)
52 2vje_B MDM4 protein; proto-onc 98.7 1.9E-08 6.7E-13 65.3 4.1 49 94-147 6-55 (63)
53 1jm7_B BARD1, BRCA1-associated 98.7 4.9E-09 1.7E-13 75.3 1.2 48 94-149 21-68 (117)
54 1e4u_A Transcriptional repress 98.6 1.3E-08 4.6E-13 69.1 2.0 51 95-148 11-62 (78)
55 2kr4_A Ubiquitin conjugation f 98.5 6.3E-08 2.2E-12 66.3 4.0 48 95-149 14-61 (85)
56 3knv_A TNF receptor-associated 98.5 1.5E-08 5.2E-13 75.7 0.8 46 94-146 30-76 (141)
57 1bor_A Transcription factor PM 98.5 1.7E-08 5.9E-13 63.8 0.7 48 95-152 6-53 (56)
58 1vyx_A ORF K3, K3RING; zinc-bi 98.5 3.3E-08 1.1E-12 64.1 2.0 26 123-148 32-59 (60)
59 1x4j_A Ring finger protein 38; 98.5 1.8E-08 6.1E-13 66.7 0.6 51 43-108 22-73 (75)
60 2y1n_A E3 ubiquitin-protein li 98.5 5.8E-08 2E-12 83.8 3.8 46 96-148 333-379 (389)
61 2kre_A Ubiquitin conjugation f 98.5 1E-07 3.5E-12 67.4 4.4 47 95-148 29-75 (100)
62 1wgm_A Ubiquitin conjugation f 98.5 9E-08 3.1E-12 67.5 3.7 48 95-149 22-70 (98)
63 1iym_A EL5; ring-H2 finger, ub 98.5 6.6E-08 2.2E-12 60.0 2.3 48 44-105 5-53 (55)
64 3hcs_A TNF receptor-associated 98.4 1.1E-07 3.8E-12 72.0 2.9 48 94-148 17-65 (170)
65 4ic3_A E3 ubiquitin-protein li 98.4 8.2E-08 2.8E-12 63.9 1.7 43 94-147 23-66 (74)
66 2kiz_A E3 ubiquitin-protein li 98.4 7.2E-08 2.5E-12 62.5 1.4 50 44-108 14-64 (69)
67 2ecm_A Ring finger and CHY zin 98.4 1E-07 3.5E-12 58.9 1.8 50 42-105 3-53 (55)
68 2yu4_A E3 SUMO-protein ligase 98.4 1.9E-07 6.3E-12 64.9 3.1 45 95-145 7-59 (94)
69 2ep4_A Ring finger protein 24; 98.3 7.3E-08 2.5E-12 63.3 0.7 50 43-107 14-64 (74)
70 3k1l_B Fancl; UBC, ring, RWD, 98.3 7.3E-08 2.5E-12 82.5 0.8 30 118-147 332-372 (381)
71 2ect_A Ring finger protein 126 98.3 1.4E-07 4.8E-12 62.5 1.7 51 43-108 14-65 (78)
72 3nw0_A Non-structural maintena 98.3 4.5E-07 1.5E-11 73.4 4.3 52 95-152 180-233 (238)
73 2l0b_A E3 ubiquitin-protein li 98.3 1.2E-07 4.3E-12 65.2 0.4 49 43-106 39-88 (91)
74 2c2l_A CHIP, carboxy terminus 98.2 8.2E-07 2.8E-11 70.7 4.1 47 95-148 208-255 (281)
75 2ea6_A Ring finger protein 4; 98.1 3.8E-07 1.3E-11 58.5 0.7 53 43-106 14-67 (69)
76 3ng2_A RNF4, snurf, ring finge 98.1 3.9E-07 1.3E-11 59.0 0.7 55 43-108 9-64 (71)
77 2ecg_A Baculoviral IAP repeat- 98.1 9.3E-07 3.2E-11 58.7 2.4 42 95-147 25-67 (75)
78 2xeu_A Ring finger protein 4; 98.1 5.5E-07 1.9E-11 56.9 0.6 54 44-108 3-57 (64)
79 2d8t_A Dactylidin, ring finger 98.1 1.2E-06 3.9E-11 57.3 2.2 46 43-106 14-60 (71)
80 2d8s_A Cellular modulator of i 98.0 1.1E-06 3.6E-11 60.0 1.3 49 43-107 14-70 (80)
81 2bay_A PRE-mRNA splicing facto 98.0 3.5E-06 1.2E-10 54.5 3.2 48 96-149 4-51 (61)
82 2djb_A Polycomb group ring fin 98.0 1.4E-06 4.8E-11 57.0 1.1 48 44-108 15-63 (72)
83 2ecn_A Ring finger protein 141 98.0 1E-06 3.4E-11 57.2 0.3 46 44-108 15-61 (70)
84 2f42_A STIP1 homology and U-bo 97.9 6.6E-06 2.3E-10 64.1 4.2 49 94-149 105-154 (179)
85 2ea5_A Cell growth regulator w 97.9 5.5E-06 1.9E-10 54.4 3.0 43 94-147 14-57 (68)
86 2ysl_A Tripartite motif-contai 97.9 4.6E-06 1.6E-10 54.2 2.2 47 44-108 20-70 (73)
87 1wim_A KIAA0161 protein; ring 97.9 6.3E-06 2.2E-10 56.7 3.0 47 95-145 5-61 (94)
88 2yho_A E3 ubiquitin-protein li 97.9 3.6E-06 1.2E-10 56.8 1.5 43 94-147 17-60 (79)
89 3htk_C E3 SUMO-protein ligase 97.8 7.4E-06 2.5E-10 67.5 3.0 49 94-148 180-232 (267)
90 2yur_A Retinoblastoma-binding 97.8 4.3E-06 1.5E-10 55.1 0.6 45 44-105 15-62 (74)
91 4ayc_A E3 ubiquitin-protein li 97.8 7.3E-06 2.5E-10 60.2 1.7 45 45-107 54-99 (138)
92 3vk6_A E3 ubiquitin-protein li 97.7 2.5E-05 8.4E-10 55.8 4.1 44 98-147 4-48 (101)
93 2y43_A E3 ubiquitin-protein li 97.7 7.3E-06 2.5E-10 56.6 1.2 47 44-107 22-69 (99)
94 3lrq_A E3 ubiquitin-protein li 97.7 1E-05 3.5E-10 56.4 1.3 47 44-107 22-70 (100)
95 2ct2_A Tripartite motif protei 97.7 1.4E-05 4.8E-10 53.4 1.9 51 44-108 15-69 (88)
96 2csy_A Zinc finger protein 183 97.6 1.4E-05 4.9E-10 53.1 1.4 45 44-106 15-60 (81)
97 3t6p_A Baculoviral IAP repeat- 97.6 1.3E-05 4.3E-10 68.1 1.3 43 94-147 294-337 (345)
98 2ecy_A TNF receptor-associated 97.6 1.1E-05 3.9E-10 51.7 0.6 47 44-108 15-63 (66)
99 2ckl_A Polycomb group ring fin 97.6 1.9E-05 6.5E-10 55.4 1.7 48 44-108 15-63 (108)
100 2ysj_A Tripartite motif-contai 97.6 1.8E-05 6E-10 50.2 1.0 40 44-101 20-63 (63)
101 2egp_A Tripartite motif-contai 97.5 1.9E-05 6.6E-10 51.8 1.1 46 44-107 12-65 (79)
102 2ecj_A Tripartite motif-contai 97.5 2.3E-05 7.8E-10 48.5 0.5 40 44-101 15-58 (58)
103 2ckl_B Ubiquitin ligase protei 97.5 2.9E-05 1E-09 58.3 1.2 46 45-107 55-102 (165)
104 2ecw_A Tripartite motif-contai 97.4 3.1E-05 1.1E-09 51.1 1.1 46 44-107 19-71 (85)
105 1t1h_A Gspef-atpub14, armadill 97.4 4.4E-05 1.5E-09 50.2 1.7 67 44-137 8-76 (78)
106 3fl2_A E3 ubiquitin-protein li 97.4 4.2E-05 1.4E-09 54.8 1.4 46 44-107 52-99 (124)
107 1jm7_B BARD1, BRCA1-associated 97.4 5.5E-05 1.9E-09 53.9 2.0 46 44-107 22-67 (117)
108 2ecv_A Tripartite motif-contai 97.3 5.3E-05 1.8E-09 49.9 1.3 46 44-107 19-71 (85)
109 3l11_A E3 ubiquitin-protein li 97.3 6.3E-05 2.2E-09 53.1 1.8 45 44-106 15-61 (115)
110 1v87_A Deltex protein 2; ring- 97.3 4.7E-05 1.6E-09 53.5 0.9 65 43-107 24-94 (114)
111 1bor_A Transcription factor PM 97.3 0.00012 4.2E-09 45.7 2.5 46 44-109 6-51 (56)
112 1jm7_A BRCA1, breast cancer ty 97.3 5.2E-05 1.8E-09 52.9 0.5 46 45-108 22-71 (112)
113 3ztg_A E3 ubiquitin-protein li 97.2 5.3E-05 1.8E-09 51.3 0.4 45 44-105 13-60 (92)
114 1e4u_A Transcriptional repress 97.2 0.00011 3.9E-09 49.4 1.8 49 44-108 11-63 (78)
115 1rmd_A RAG1; V(D)J recombinati 97.1 0.00012 4.1E-09 51.7 1.2 46 44-107 23-70 (116)
116 1z6u_A NP95-like ring finger p 97.1 0.00016 5.6E-09 54.0 1.6 46 45-108 79-126 (150)
117 1chc_A Equine herpes virus-1 r 96.9 0.00012 4.1E-09 46.7 -0.3 47 43-106 4-51 (68)
118 3hct_A TNF receptor-associated 96.9 0.00022 7.6E-09 50.7 1.0 46 44-107 18-65 (118)
119 4ic3_A E3 ubiquitin-protein li 96.4 0.00096 3.3E-08 43.8 1.2 43 44-107 24-67 (74)
120 2y1n_A E3 ubiquitin-protein li 96.4 0.00081 2.8E-08 58.0 1.0 45 45-107 333-379 (389)
121 3knv_A TNF receptor-associated 96.4 0.00052 1.8E-08 50.8 -0.2 75 45-141 32-109 (141)
122 3nw0_A Non-structural maintena 96.2 0.0015 5E-08 52.6 1.6 49 44-109 180-231 (238)
123 1g25_A CDK-activating kinase a 96.0 0.0016 5.3E-08 41.3 0.9 51 44-108 3-56 (65)
124 2vje_B MDM4 protein; proto-onc 96.0 0.0017 5.9E-08 41.5 0.9 48 43-106 6-55 (63)
125 2vje_A E3 ubiquitin-protein li 95.8 0.0021 7.1E-08 41.2 0.6 48 43-106 7-56 (64)
126 2kre_A Ubiquitin conjugation f 95.8 0.0032 1.1E-07 44.0 1.6 67 44-137 29-96 (100)
127 2kr4_A Ubiquitin conjugation f 95.7 0.0026 8.9E-08 43.0 1.0 46 44-107 14-60 (85)
128 3hcs_A TNF receptor-associated 95.6 0.0029 9.8E-08 47.4 0.9 45 45-107 19-65 (170)
129 2ysm_A Myeloid/lymphoid or mix 95.4 0.01 3.6E-07 41.8 3.1 84 41-144 4-103 (111)
130 2ecg_A Baculoviral IAP repeat- 95.1 0.0067 2.3E-07 39.6 1.2 43 44-107 25-68 (75)
131 2c2l_A CHIP, carboxy terminus 95.0 0.0069 2.4E-07 47.7 1.4 67 44-137 208-276 (281)
132 1wgm_A Ubiquitin conjugation f 95.0 0.0092 3.2E-07 41.4 1.8 66 44-136 22-89 (98)
133 2yu4_A E3 SUMO-protein ligase 94.8 0.0053 1.8E-07 42.0 0.1 44 44-104 7-59 (94)
134 3t6p_A Baculoviral IAP repeat- 93.2 0.043 1.5E-06 46.3 2.6 43 44-107 295-338 (345)
135 3asl_A E3 ubiquitin-protein li 93.1 0.028 9.6E-07 36.9 1.1 32 114-145 33-69 (70)
136 3v43_A Histone acetyltransfera 92.8 0.022 7.5E-07 40.4 0.2 63 79-144 31-111 (112)
137 2yho_A E3 ubiquitin-protein li 92.6 0.045 1.6E-06 36.3 1.6 43 44-107 18-61 (79)
138 2ea5_A Cell growth regulator w 92.3 0.053 1.8E-06 35.0 1.6 43 44-107 15-58 (68)
139 3htk_C E3 SUMO-protein ligase 91.0 0.057 1.9E-06 44.4 0.8 48 43-107 180-232 (267)
140 3k1l_B Fancl; UBC, ring, RWD, 90.9 0.033 1.1E-06 47.7 -0.7 52 44-105 308-371 (381)
141 2f42_A STIP1 homology and U-bo 90.4 0.084 2.9E-06 40.7 1.2 66 45-137 107-174 (179)
142 2kwj_A Zinc finger protein DPF 89.5 0.17 5.8E-06 35.9 2.1 63 79-145 28-108 (114)
143 3shb_A E3 ubiquitin-protein li 89.2 0.098 3.3E-06 35.1 0.7 44 98-145 29-77 (77)
144 1vyx_A ORF K3, K3RING; zinc-bi 88.9 0.069 2.4E-06 33.9 -0.3 49 42-106 4-58 (60)
145 2lri_C Autoimmune regulator; Z 88.7 0.28 9.5E-06 31.8 2.6 45 95-146 12-60 (66)
146 1f62_A Transcription factor WS 88.5 0.25 8.6E-06 29.8 2.2 44 97-144 2-49 (51)
147 1wim_A KIAA0161 protein; ring 88.2 0.084 2.9E-06 35.6 -0.2 46 44-104 5-61 (94)
148 3lqh_A Histone-lysine N-methyl 87.6 0.26 8.9E-06 38.1 2.2 50 96-145 3-63 (183)
149 2e6s_A E3 ubiquitin-protein li 86.5 0.23 7.9E-06 33.1 1.2 45 97-145 28-77 (77)
150 2ku3_A Bromodomain-containing 85.5 0.82 2.8E-05 29.9 3.5 61 82-144 3-65 (71)
151 3ask_A E3 ubiquitin-protein li 84.6 0.27 9.3E-06 39.4 1.0 46 96-145 175-225 (226)
152 2bay_A PRE-mRNA splicing facto 83.5 0.28 9.4E-06 31.0 0.5 47 45-108 4-51 (61)
153 2l5u_A Chromodomain-helicase-D 82.5 0.66 2.3E-05 29.3 2.0 32 114-145 23-58 (61)
154 2jun_A Midline-1; B-BOX, TRIM, 82.1 0.76 2.6E-05 31.0 2.3 34 96-133 4-38 (101)
155 3u5n_A E3 ubiquitin-protein li 81.0 0.47 1.6E-05 36.7 1.0 32 114-145 19-54 (207)
156 3o36_A Transcription intermedi 78.8 0.54 1.9E-05 35.5 0.7 34 114-147 16-53 (184)
157 1wen_A Inhibitor of growth fam 77.9 0.98 3.4E-05 29.5 1.7 42 96-145 17-65 (71)
158 1mm2_A MI2-beta; PHD, zinc fin 76.1 0.36 1.2E-05 30.5 -0.8 9 44-52 9-17 (61)
159 2vpb_A Hpygo1, pygopus homolog 75.0 2 6.7E-05 27.6 2.5 34 94-130 7-41 (65)
160 3v43_A Histone acetyltransfera 73.9 4.9 0.00017 28.0 4.6 37 94-130 4-42 (112)
161 3ql9_A Transcriptional regulat 73.6 2.6 8.9E-05 30.8 3.2 32 114-145 69-111 (129)
162 2yt5_A Metal-response element- 73.4 1.6 5.5E-05 27.4 1.8 49 95-145 6-61 (66)
163 2k16_A Transcription initiatio 72.7 2.6 9E-05 27.1 2.7 47 95-145 18-68 (75)
164 3c6w_A P28ING5, inhibitor of g 71.9 0.73 2.5E-05 29.0 -0.1 40 97-144 11-57 (59)
165 2lbm_A Transcriptional regulat 71.7 4.8 0.00017 29.8 4.3 32 114-145 75-117 (142)
166 1weu_A Inhibitor of growth fam 71.3 1.1 3.8E-05 30.9 0.6 41 97-145 38-85 (91)
167 1wep_A PHF8; structural genomi 70.9 2.8 9.5E-05 27.5 2.6 46 97-146 14-64 (79)
168 3vk6_A E3 ubiquitin-protein li 70.4 1.1 3.7E-05 31.7 0.4 28 80-107 20-49 (101)
169 2yql_A PHD finger protein 21A; 70.0 0.39 1.3E-05 29.7 -1.8 9 44-52 9-17 (56)
170 2vnf_A ING 4, P29ING4, inhibit 69.8 0.83 2.8E-05 28.8 -0.3 40 97-144 12-58 (60)
171 1we9_A PHD finger family prote 67.2 2.8 9.7E-05 26.1 1.9 48 95-145 6-58 (64)
172 2lv9_A Histone-lysine N-methyl 66.9 2.2 7.7E-05 29.3 1.5 43 97-144 30-75 (98)
173 2puy_A PHD finger protein 21A; 65.6 2.6 8.9E-05 26.1 1.5 12 41-52 2-13 (60)
174 2gmg_A Hypothetical protein PF 65.3 1.1 3.9E-05 31.8 -0.3 25 118-147 71-95 (105)
175 2xb1_A Pygopus homolog 2, B-ce 65.2 2.8 9.6E-05 29.2 1.7 49 96-147 4-63 (105)
176 4gne_A Histone-lysine N-methyl 64.4 3.6 0.00012 29.0 2.2 53 79-134 34-89 (107)
177 2g6q_A Inhibitor of growth pro 64.2 1.3 4.5E-05 28.1 -0.2 39 100-145 15-60 (62)
178 2ko5_A Ring finger protein Z; 63.6 2 6.7E-05 30.2 0.7 28 118-145 42-70 (99)
179 1fp0_A KAP-1 corepressor; PHD 62.9 2.5 8.5E-05 28.9 1.1 34 114-147 37-74 (88)
180 2ysm_A Myeloid/lymphoid or mix 62.7 2.7 9.2E-05 29.1 1.2 37 94-134 6-42 (111)
181 1wil_A KIAA1045 protein; ring 60.2 3.5 0.00012 28.3 1.4 33 95-132 15-47 (89)
182 1weo_A Cellulose synthase, cat 55.8 12 0.00043 25.8 3.6 54 94-147 15-69 (93)
183 2jmo_A Parkin; IBR, E3 ligase, 54.6 1.2 4.1E-05 29.5 -1.7 39 95-134 25-70 (80)
184 1wem_A Death associated transc 53.0 9.5 0.00032 24.5 2.6 44 97-145 18-70 (76)
185 1xwh_A Autoimmune regulator; P 52.6 4.9 0.00017 25.4 1.1 9 44-52 8-16 (66)
186 2lq6_A Bromodomain-containing 51.3 3.3 0.00011 27.9 0.1 35 44-92 17-51 (87)
187 2kwj_A Zinc finger protein DPF 50.5 7.2 0.00025 27.2 1.8 38 95-132 1-41 (114)
188 1wev_A Riken cDNA 1110020M19; 49.4 8 0.00027 25.9 1.8 49 95-145 16-72 (88)
189 2jne_A Hypothetical protein YF 48.4 6.8 0.00023 27.5 1.4 23 90-121 56-78 (101)
190 4fo9_A E3 SUMO-protein ligase 48.1 18 0.00062 30.6 4.2 50 95-150 215-268 (360)
191 3i2d_A E3 SUMO-protein ligase 47.9 18 0.00061 30.8 4.1 49 96-150 250-302 (371)
192 3o70_A PHD finger protein 13; 47.0 8.4 0.00029 24.6 1.6 45 95-144 19-66 (68)
193 2akl_A PHNA-like protein PA012 46.5 7.4 0.00025 28.7 1.3 27 94-122 26-52 (138)
194 2l43_A N-teminal domain from h 44.8 12 0.00042 25.0 2.2 51 94-146 24-76 (88)
195 2e6r_A Jumonji/ARID domain-con 44.0 5.4 0.00018 27.0 0.3 47 94-144 15-65 (92)
196 2ro1_A Transcription intermedi 41.5 5 0.00017 30.5 -0.2 45 96-147 3-51 (189)
197 1wew_A DNA-binding family prot 41.0 20 0.00069 23.2 2.7 45 96-145 17-72 (78)
198 3f6q_B LIM and senescent cell 40.5 26 0.00089 21.1 3.1 41 94-147 10-50 (72)
199 2kgg_A Histone demethylase jar 39.5 12 0.0004 22.5 1.3 44 97-143 4-52 (52)
200 3ask_A E3 ubiquitin-protein li 39.4 11 0.00038 29.9 1.5 27 78-104 193-225 (226)
201 2ct7_A Ring finger protein 31; 38.3 3.5 0.00012 27.4 -1.4 34 98-132 28-61 (86)
202 2jrp_A Putative cytoplasmic pr 38.0 9.9 0.00034 25.6 0.8 23 92-123 28-50 (81)
203 3m62_A Ubiquitin conjugation f 36.7 28 0.00095 33.2 3.9 45 96-147 892-937 (968)
204 2o35_A Hypothetical protein DU 36.6 13 0.00044 26.2 1.2 13 123-135 42-54 (105)
205 3fyb_A Protein of unknown func 36.5 13 0.00044 26.2 1.2 13 123-135 41-53 (104)
206 1wd2_A Ariadne-1 protein homol 34.6 12 0.0004 23.4 0.7 40 95-136 6-48 (60)
207 1zfo_A LAsp-1; LIM domain, zin 31.6 13 0.00045 20.0 0.5 28 96-129 4-31 (31)
208 1iml_A CRIP, cysteine rich int 30.2 16 0.00053 22.9 0.8 12 96-107 28-39 (76)
209 1z60_A TFIIH basal transcripti 27.4 28 0.00095 21.9 1.6 42 97-142 17-58 (59)
210 2ri7_A Nucleosome-remodeling f 25.3 34 0.0012 24.9 2.0 45 96-144 9-58 (174)
211 3mjh_B Early endosome antigen 25.1 15 0.00051 20.7 -0.0 10 138-147 7-16 (34)
212 3o7a_A PHD finger protein 13 v 24.8 26 0.00088 20.8 1.0 41 100-144 8-51 (52)
213 2jmi_A Protein YNG1, ING1 homo 24.6 22 0.00074 24.2 0.7 41 96-144 27-75 (90)
214 1wee_A PHD finger family prote 23.4 32 0.0011 21.7 1.4 45 97-145 18-66 (72)
215 2cs3_A Protein C14ORF4, MY039 22.9 60 0.0021 22.1 2.7 15 121-135 38-52 (93)
216 1x4k_A Skeletal muscle LIM-pro 22.8 33 0.0011 20.8 1.3 11 96-106 6-16 (72)
217 1wyh_A SLIM 2, skeletal muscle 21.2 29 0.00099 21.1 0.8 11 96-106 6-16 (72)
218 1x68_A FHL5 protein; four-and- 21.0 38 0.0013 21.0 1.3 32 95-129 5-36 (76)
No 1
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.97 E-value=7.5e-31 Score=190.24 Aligned_cols=95 Identities=93% Similarity=1.675 Sum_probs=80.3
Q ss_pred CCccccceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCcc
Q psy16471 19 TTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLC 98 (153)
Q Consensus 19 ~~~~~~~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~C 98 (153)
.....+++|+||+|++|+.|+||+.+|+|+||++.|.+.|+.|+.+....+
T Consensus 12 ~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~----------------------------- 62 (106)
T 3dpl_R 12 NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASAT----------------------------- 62 (106)
T ss_dssp -----CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC------------------------------
T ss_pred ccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccC-----------------------------
Confidence 356788999999999999999999999999999999998888876543333
Q ss_pred ccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471 99 IECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153 (153)
Q Consensus 99 piC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~ 153 (153)
++++.+++++|+|.||.+||.+||+++.+||+||++|.|+++||
T Consensus 63 -----------~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~g~ 106 (106)
T 3dpl_R 63 -----------SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 106 (106)
T ss_dssp -------------CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEEECCC
T ss_pred -----------CccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceeecCCC
Confidence 34458899999999999999999999999999999999999997
No 2
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.96 E-value=6.5e-31 Score=193.95 Aligned_cols=96 Identities=92% Similarity=1.663 Sum_probs=20.7
Q ss_pred CCCccccceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCc
Q psy16471 18 STTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDL 97 (153)
Q Consensus 18 ~~~~~~~~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~ 97 (153)
+++...+++|+||+|++|+.|+||+.+|+|+||+++|++.|+.|+.+.+..+++
T Consensus 22 ~~~~~~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~-------------------------- 75 (117)
T 4a0k_B 22 TNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSE-------------------------- 75 (117)
T ss_dssp ------CCSEEEEEEEEEEEEEECCCC-----------------------------------------------------
T ss_pred CCCCCcCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhccccccccc--------------------------
Confidence 345567899999999999999999999999999999999999988764444444
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~ 153 (153)
+|.+++++|+|.||.+||.+||+++.+||+||++|+++++||
T Consensus 76 --------------~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k~g~ 117 (117)
T 4a0k_B 76 --------------ECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 117 (117)
T ss_dssp --------------------------------------------------------
T ss_pred --------------ccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeeccCC
Confidence 448888999999999999999999999999999999999997
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5e-25 Score=151.28 Aligned_cols=80 Identities=44% Similarity=1.125 Sum_probs=68.8
Q ss_pred EEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccCCCC
Q psy16471 31 KWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTS 110 (153)
Q Consensus 31 ~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~~~~ 110 (153)
+|++|+.|+||..+++|+||+++|.+.|+.|.. ++. +
T Consensus 2 ~~~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~----------------------------------------~~~---~ 38 (81)
T 2ecl_A 2 SSGSSGMWSWDVECDTCAICRVQVMDACLRCQA----------------------------------------ENK---Q 38 (81)
T ss_dssp CCCCCCCCCCSCCCSCBTTTTBCTTSCCTTHHH----------------------------------------HTC---T
T ss_pred CcceeEEeeecCCCCCCcccChhhhccCccccc----------------------------------------ccC---C
Confidence 589999999999999999999999876665544 332 2
Q ss_pred ccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471 111 EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153 (153)
Q Consensus 111 ~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~ 153 (153)
+++.++++.|+|.||.+||.+||+++++||+||++|.++++||
T Consensus 39 ~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~g~ 81 (81)
T 2ecl_A 39 EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK 81 (81)
T ss_dssp TTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEEEC
T ss_pred CceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhcCC
Confidence 3447777889999999999999999999999999999999986
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.70 E-value=6.4e-18 Score=122.25 Aligned_cols=97 Identities=19% Similarity=0.473 Sum_probs=72.4
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCCC---------Ccc
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQASTT---------SEE 112 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~~---------~~~ 112 (153)
....|+||++.+.+.-.. .-..+.-.|||.||..|+.+|. ....||+|+..+.... ...
T Consensus 6 ~~~~C~IC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~ 74 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVS 74 (133)
T ss_dssp CSCBCTTTCCBHHHHHHT-----------TCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCB
T ss_pred CCCCCcccChhhhCcccc-----------ccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCC
Confidence 346899999998753000 0012345799999999999997 6779999998874321 111
Q ss_pred c---------------eEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471 113 C---------------TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 150 (153)
Q Consensus 113 c---------------~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~ 150 (153)
| .++.++|||+||..||.+|++.+.+||+||++.....
T Consensus 75 C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp CTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 1 2367789999999999999999999999999976544
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=2.2e-14 Score=102.54 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=31.3
Q ss_pred eEEeeeecceechHHHHHHH-----cCCCCCCCCCCCcccc
Q psy16471 114 TVAWGVCNHAFHFHCISRWL-----KTRQVCPLDNREWEFQ 149 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl-----~~~~~CP~Cr~~w~~~ 149 (153)
.+.+++|+|.||.+||.+|| +.+.+||+||+.|...
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 56688999999999999999 4567899999998754
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.44 E-value=5.2e-14 Score=88.28 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=40.4
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
...|+||+..+..+. ..+.+..|||.||..||.+|++.+.+||+||++..
T Consensus 5 ~~~C~IC~~~~~~~~---~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGE---EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTS---CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCC---ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457999999986543 13333459999999999999999999999999864
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=90.64 Aligned_cols=53 Identities=28% Similarity=0.532 Sum_probs=44.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~ 150 (153)
....|+||+..+..+. .++.++|||.||..||.+|++.+.+||+||+++..+.
T Consensus 13 ~~~~C~IC~~~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGE----DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSS----CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCC----cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 3457999999885543 5677889999999999999999999999999987543
No 8
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=94.32 Aligned_cols=51 Identities=20% Similarity=0.677 Sum_probs=43.1
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~ 150 (153)
....|+||+..+.. +..|. .|+|.||.+||.+||+++ .+||+||++|.++.
T Consensus 14 ~i~~C~IC~~~i~~--g~~C~----~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQ--GQSCE----TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSS--SEECS----SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHccc--CCccC----CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 34679999999964 34454 899999999999999998 89999999998753
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=92.03 Aligned_cols=51 Identities=29% Similarity=0.681 Sum_probs=43.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
....|+||+..+.... .++.++|+|.||..||.+|++.+.+||+||++...
T Consensus 22 ~~~~C~IC~~~~~~~~----~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ----LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTC----EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCC----eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3457999999986543 66778899999999999999999999999998653
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=1.7e-13 Score=91.72 Aligned_cols=54 Identities=30% Similarity=0.503 Sum_probs=45.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 151 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~ 151 (153)
....|+||+..+.... .++.++|+|.||..||.+|++.+.+||+||+++..+..
T Consensus 14 ~~~~C~IC~~~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 14 SGLECPVCKEDYALGE----SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSCCCTTTTSCCCTTS----CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCeeCCccccCCC----CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 4567999999986543 55667899999999999999999999999999876554
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.39 E-value=2e-13 Score=94.73 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=42.3
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
...|+||+..+..+. .++.++|||.||..||.+|++.+.+||+||+++.
T Consensus 40 ~~~C~IC~~~~~~~~----~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCSEYVKGD----VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTTEECCTTC----EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCcccChhhcCCC----cEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 346899999986653 5677889999999999999999999999999864
No 12
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=90.23 Aligned_cols=50 Identities=34% Similarity=0.762 Sum_probs=42.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
....|+||+..+.... .+..++|+|.||..||.+|++.+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~~----~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRD----ELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSS----CEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCC----cEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 4567999999986543 4556789999999999999999999999999864
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=2.1e-13 Score=89.37 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=46.0
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 151 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~ 151 (153)
....|+||+..+.....+...++.++|||.||..||.+|++.+.+||+||+++....+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 3457999999884421112366788999999999999999999999999999876544
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.35 E-value=5.5e-13 Score=83.39 Aligned_cols=49 Identities=22% Similarity=0.370 Sum_probs=41.3
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 146 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w 146 (153)
...|+||+..+... +-.++.++|||.||..||.+|++.+.+||+||++.
T Consensus 5 ~~~C~IC~~~~~~~---~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 5 SSGCPICLEDIHTS---RVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCSCTTTCCCCCTT---TSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCcCcccChhhcCC---CcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 45799999998442 12567789999999999999999999999999874
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=4.3e-13 Score=87.08 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=43.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
....|+||+..+.........++.++|||.||..||.+|++.+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 456799999988543212235678899999999999999999999999999864
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=3e-13 Score=86.63 Aligned_cols=56 Identities=20% Similarity=0.425 Sum_probs=44.0
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 150 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~ 150 (153)
...|+||+..+.......-.++.++|||.||..||.+|++.+.+||+||+++..+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 34699999988442111125677899999999999999999999999999977544
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=1.1e-12 Score=85.48 Aligned_cols=45 Identities=31% Similarity=0.674 Sum_probs=35.9
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
.|+||+..+.. .++.++|||.||..||.+|++.+.+||+||++..
T Consensus 7 ~C~IC~~~~~~------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 7 RCPICLEDPSN------YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCS------CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeCCccccC------CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 45555555432 3467789999999999999999999999998865
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.3e-12 Score=83.30 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=41.2
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~ 150 (153)
....|+||+..+.. + +.++|||.||..||.+|++.+.+||+||++.....
T Consensus 14 ~~~~C~IC~~~~~~------~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 14 TVPECAICLQTCVH------P-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SCCBCSSSSSBCSS------E-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCccCCcccCC------C-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 34579999988733 2 45689999999999999999999999999876443
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.8e-12 Score=82.44 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=42.2
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~ 150 (153)
....|+||+..+.. ++.+.+|||.||..||.+|++.+.+||+||++.....
T Consensus 14 ~~~~C~IC~~~~~~------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLID------ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCSS------CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCChHHHC------cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 45579999988754 4455699999999999999999999999999876543
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=7.5e-12 Score=85.91 Aligned_cols=52 Identities=23% Similarity=0.640 Sum_probs=41.9
Q ss_pred ccCccccccccccCCCCccceEEeeeec-----ceechHHHHHHHcCC--CCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~ 150 (153)
....|+||+.++..+. .+ .++|+ |.||..||++||+.+ .+||+||.++.++.
T Consensus 14 ~~~~C~IC~~~~~~~~----~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDES----PL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSS----CE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCC----ee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3567999999885432 33 47896 999999999999986 48999999998754
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3e-11 Score=81.83 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=42.8
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC---CCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~~w~~~ 149 (153)
....|+||...+... +..++.++|||.||..||.+|++.+ .+||+||++....
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEE---QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTT---SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCcccccc---CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345799999998553 1235677999999999999999986 7899999987654
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.13 E-value=1.1e-11 Score=91.00 Aligned_cols=80 Identities=33% Similarity=0.545 Sum_probs=16.0
Q ss_pred CCCCCccccceEEEEEEEeE-----EeeeecccCcccccccccccc-chhhhhcCCCCCCccccceeccccccceeeeec
Q psy16471 16 TSSTTKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMD-LCIECQANQASTTSEECTVAWGVCNHAFHFHCI 89 (153)
Q Consensus 16 ~~~~~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d-~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~ 89 (153)
+..++++++++.+|+.|+|. +++|.+..++.|.+|+.+... +..+|.. +++.|+|.||.+||
T Consensus 26 ~~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v------------~~~~C~H~FH~~CI 93 (117)
T 4a0k_B 26 AGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV------------AWGVCNHAFHFHCI 93 (117)
T ss_dssp --CCSEEEEEEEEEEEEEECCCC---------------------------------------------------------
T ss_pred CcCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhccccccccccccc------------ccCCcCceEcHHHH
Confidence 34567899999999999995 899999999999999886322 1122322 36789999999999
Q ss_pred cccc-ccCccccccccccC
Q psy16471 90 SRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 90 ~~w~-~~~~CpiC~~~~~~ 107 (153)
.+|+ .+..||+|+++|..
T Consensus 94 ~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 94 SRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp -------------------
T ss_pred HHHHHcCCcCCCCCCeeee
Confidence 9998 77899999999743
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.5e-11 Score=79.10 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=41.2
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc---CCCCCCCCCCCcccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNREWEFQKY 151 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~---~~~~CP~Cr~~w~~~~~ 151 (153)
....||||+..+.. + +.++|||.||..||.+|++ .+.+||+||++......
T Consensus 19 ~~~~C~IC~~~~~~------~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQK------P-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCSS------E-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccCC------e-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 45679999998753 3 4459999999999999997 35689999999876654
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.1e-11 Score=81.19 Aligned_cols=47 Identities=23% Similarity=0.517 Sum_probs=40.2
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
....|+||+..+.. +.++|||.||..||.+|++.+.+||+||++...
T Consensus 14 ~~~~C~IC~~~~~~--------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD--------LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS--------EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccC--------cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 45679999988732 567899999999999999999999999988653
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=1.7e-11 Score=88.17 Aligned_cols=55 Identities=18% Similarity=0.387 Sum_probs=43.5
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 149 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~ 149 (153)
...|+||+..+.....+.-.++.++|||+||..||.+|++.+.+||+||+.....
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4579999998843211112567889999999999999999999999999987644
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.6e-11 Score=77.60 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=39.9
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~w~~~~ 150 (153)
....||||+..+... +.++|||.||..||.+|++ .+.+||+||++....+
T Consensus 14 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP-------KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEESSC-------CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHhcCe-------eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 345799999887542 3369999999999999995 5678999999976544
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=5.5e-11 Score=83.68 Aligned_cols=51 Identities=22% Similarity=0.509 Sum_probs=42.0
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~~~ 150 (153)
....|+||+..+.. ++..+.|||.||..||.+|++.+ .+||+||++.....
T Consensus 21 ~~~~C~IC~~~~~~------p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRD------ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSS------EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccC------ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 44579999998843 44448999999999999999988 68999999976543
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.09 E-value=5e-11 Score=88.27 Aligned_cols=46 Identities=26% Similarity=0.581 Sum_probs=39.4
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
-.||||...+.. ++.++|||.||..||.+|++.+.+||+||++...
T Consensus 54 ~~C~iC~~~~~~-------~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-------AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-------EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-------ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 359999988843 3567899999999999999999999999998753
No 29
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.08 E-value=1.8e-11 Score=88.14 Aligned_cols=92 Identities=35% Similarity=0.563 Sum_probs=63.4
Q ss_pred CCCCCcccCCCCCCCCCCccccceEEEEEEEeE-----EeeeecccCcccccccccccc-chhhhhcCCCCCCcccccee
Q psy16471 3 AMEVDTEENVELPTSSTTKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMD-LCIECQANQASTTSEECTVA 76 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d-~c~~C~~~~~~~~~~~c~~~ 76 (153)
+|+++++.++...+...+++++++.+|+.|+|. +++|.+..++.|.+|+.++.. ...+ |+++
T Consensus 2 ~~~~~~~~~~~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~------------~~~~ 69 (106)
T 3dpl_R 2 SMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE------------CTVA 69 (106)
T ss_dssp ---------------CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---C------------CCEE
T ss_pred CcccCCCcccccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCcc------------ceEe
Confidence 356666555555556778999999999999996 789999999999999875432 1112 2456
Q ss_pred ccccccceeeeeccccc-ccCcccccccccc
Q psy16471 77 WGVCNHAFHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 77 ~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
.+.|+|.||.+||.+|+ .+..||+|++.+.
T Consensus 70 ~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 70 WGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp EETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred ecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 77899999999999997 7789999999973
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.07 E-value=9.5e-11 Score=81.73 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=40.6
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
...|+||...+.. ++...+|||.||..||.+|++.+.+||+||+....
T Consensus 22 ~~~C~IC~~~~~~------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI------AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC------cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4579999988843 44455899999999999999999999999998764
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=77.52 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=38.1
Q ss_pred ccCccccccccccCCCCccceEEeee-ecceechHHHHHHHcCC--CCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGV-CNHAFHFHCISRWLKTR--QVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~-C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w~ 147 (153)
....||||+..+.. ++ .++ |||.||..||.+|++.+ .+||+||++..
T Consensus 14 ~~~~C~IC~~~~~~------p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTD------AV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTT------CE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhC------Ce-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 34579999988854 33 356 99999999999999876 68999999754
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=9e-11 Score=79.06 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=39.1
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
...|+||+..+.. + +.++|||.||..||.+|++...+||+||++..
T Consensus 15 ~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN------P-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS------E-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC------e-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4579999988843 2 45799999999999999999999999999853
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.02 E-value=1.7e-10 Score=76.89 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=39.4
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ 149 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~ 149 (153)
.-.||||+..+.. + +.++|||+|+..||.+|++. +.+||+||++....
T Consensus 8 ~~~C~IC~~~~~~------P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 8 YFRCPISLELMKD------P-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSCTTTSCCCSS------E-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cCCCCCccccccC------C-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4579999988743 3 44689999999999999997 77899999986543
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=2.4e-10 Score=76.44 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=40.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC------CCCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~w~~~ 149 (153)
....|+||+..+... +.++|||.||..||.+|++. ...||+||++....
T Consensus 18 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP-------VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC-------EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc-------eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 455799999887442 35789999999999999998 67899999987644
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.99 E-value=2.8e-10 Score=80.59 Aligned_cols=49 Identities=24% Similarity=0.480 Sum_probs=40.9
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
....||||...+.. ++...+|||.||..||.+|++.+.+||+||+....
T Consensus 14 ~~~~C~IC~~~~~~------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID------ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS------EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC------cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 45579999988843 44555999999999999999999999999998653
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=2.6e-10 Score=73.75 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=29.4
Q ss_pred EEeeeecceechHHHHHHHcC-CCCCCCCCCCccccc
Q psy16471 115 VAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQK 150 (153)
Q Consensus 115 ~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~~ 150 (153)
++.++|||+||..||.+|+.. +.+||+||++.....
T Consensus 21 ~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 21 LMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp EEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred eecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 356789999999999999765 467999999876443
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.2e-10 Score=75.81 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=40.9
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC------CCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~w~~~~ 150 (153)
....|+||...+..- +.++|||.||..||.+|++. ...||+||+......
T Consensus 18 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQP-------LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSSC-------BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccCCc-------eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 456799999988442 44689999999999999987 778999999877543
No 38
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.3e-11 Score=81.97 Aligned_cols=66 Identities=30% Similarity=0.578 Sum_probs=54.1
Q ss_pred EEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccc
Q psy16471 27 FDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIE 100 (153)
Q Consensus 27 ~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~Cpi 100 (153)
.+|..|+|. +.++.+...+.|+||++++.+ ++.+.+...|+|.||..|+.+|+ ....||+
T Consensus 4 ~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~--------------~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 69 (81)
T 2ecl_A 4 GSSGMWSWDVECDTCAICRVQVMDACLRCQAENKQ--------------EDCVVVWGECNHSFHNCCMSLWVKQNNRCPL 69 (81)
T ss_dssp CCCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCT--------------TTCCEEEETTSCEEEHHHHHHHTTTCCBCTT
T ss_pred ceeEEeeecCCCCCCcccChhhhccCcccccccCC--------------CceEEEeCCCCCccChHHHHHHHHhCCCCCC
Confidence 345667764 789999999999999998764 23355667899999999999997 6779999
Q ss_pred cccccc
Q psy16471 101 CQANQA 106 (153)
Q Consensus 101 C~~~~~ 106 (153)
|++++.
T Consensus 70 CR~~~~ 75 (81)
T 2ecl_A 70 CQQDWV 75 (81)
T ss_dssp TCCBCC
T ss_pred cCCCcc
Confidence 999984
No 39
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.95 E-value=1.3e-10 Score=77.36 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=39.8
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-------CCCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-------~~~CP~Cr~~w~~~ 149 (153)
....||||+..+..- +.++|||.||..||.+|++. ...||+||++....
T Consensus 11 ~~~~C~IC~~~~~~p-------~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEP-------LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSC-------CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCe-------eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 345799999988442 34689999999999999987 56899999987654
No 40
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=5.9e-10 Score=71.51 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=34.3
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc---CCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLD 142 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~---~~~~CP~C 142 (153)
....||||+..+.. + +.++|||.||..||.+|++ .+.+||+|
T Consensus 19 ~~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK------P-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS------C-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC------e-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45679999988853 2 4459999999999999998 45689998
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.91 E-value=7.3e-10 Score=83.88 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=39.3
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~ 147 (153)
...||||+..+.. ++...+|||.||..||.+|++. +..||+||.+..
T Consensus 54 ~~~C~IC~~~~~~------p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN------TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS------EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC------cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3479999988853 5555699999999999999998 778999999863
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=7e-10 Score=69.59 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=34.1
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc---CCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLD 142 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~---~~~~CP~C 142 (153)
....|+||+..+... +.++|||.||..||.+|++ .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP-------VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC-------CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc-------EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456799999988542 4478999999999999954 56789998
No 43
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.88 E-value=8.8e-10 Score=79.80 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=38.5
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF 148 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~ 148 (153)
.-.||||...+.. + +.++|||.||..||.+|++.+. +||+||++...
T Consensus 52 ~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR------P-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS------E-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC------c-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4569999988853 3 4569999999999999998655 89999998753
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=9.5e-10 Score=77.58 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=38.8
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC---CCCCCCCCcccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWEFQ 149 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~---~CP~Cr~~w~~~ 149 (153)
...||||...+... +.++|||.||..||.+|++.+. +||+||++....
T Consensus 21 ~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP-------VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC-------CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe-------EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 44799999887432 3468999999999999999764 899999987643
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.85 E-value=1.4e-09 Score=77.72 Aligned_cols=50 Identities=26% Similarity=0.305 Sum_probs=40.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCccccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQK 150 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~~ 150 (153)
....||||+..+.. + +.++|||.||..||.+|++. +.+||+||++.....
T Consensus 22 ~~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD------P-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC------c-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 34579999988743 3 44799999999999999997 678999999876543
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.80 E-value=2.4e-09 Score=73.38 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=36.8
Q ss_pred cCccccccccccCCCCccceEEeee-ecceechHHHHHHHcCC--CCCCCCCCCc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGV-CNHAFHFHCISRWLKTR--QVCPLDNREW 146 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~-C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w 146 (153)
.-.||||...+.. + +.++ |||.|+..||.+|++.+ ..||+||++.
T Consensus 13 ~~~C~IC~~~~~~------p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD------A-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS------C-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC------c-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4579999988853 3 3456 99999999999999754 5899999986
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.79 E-value=2e-09 Score=77.45 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=40.0
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~~ 149 (153)
..-.||||...+.. + +.++|||.|+..||.+|++.+. +||+||++....
T Consensus 17 ~~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALRE------A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcC------e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 45579999988743 3 4468999999999999999865 899999987653
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.75 E-value=4.3e-09 Score=79.38 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=39.9
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~~ 149 (153)
....|+||+..+.. + +.++|||.||..||.+|++.+. +||+||.+....
T Consensus 77 ~~~~C~IC~~~~~~------p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ------P-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS------E-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC------C-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34579999988743 2 4479999999999999999865 799999987643
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.74 E-value=2.3e-09 Score=76.55 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=37.8
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~ 147 (153)
.-.|+||...+.. + +.++|||.||..||.+|++. +.+||+||+...
T Consensus 15 ~~~C~iC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE------P-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS------C-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc------e-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3469999988743 2 44589999999999999987 568999999865
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.69 E-value=1.5e-08 Score=66.02 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=38.7
Q ss_pred ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
....|+||.....+. ....++|||. |...|+.+|.+.+..||+||++..
T Consensus 7 ~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG-----CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE-----EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE-----EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 355799999876332 2223499999 789999999999999999999864
No 51
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=5.2e-09 Score=71.00 Aligned_cols=51 Identities=20% Similarity=0.601 Sum_probs=40.4
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-cc--CccccccccccCCCC
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IM--DLCIECQANQASTTS 110 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~--~~CpiC~~~~~~~~~ 110 (153)
..+.|+||++.++. ...|. .|+|.||++|+.+|. .. ..||+|+.++....+
T Consensus 14 ~i~~C~IC~~~i~~-------------g~~C~----~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 14 AVKICNICHSLLIQ-------------GQSCE----TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSCBCSSSCCBCSS-------------SEECS----SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCcCcchhhHccc-------------CCccC----CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 35899999999862 23443 799999999999997 33 789999999966543
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.66 E-value=1.9e-08 Score=65.28 Aligned_cols=49 Identities=24% Similarity=0.565 Sum_probs=39.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
....|+||.....+. .++.++|||. |...|+.+|.+.+..||+||++.+
T Consensus 6 ~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-----NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-----EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-----EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 356799999875332 4445699998 999999999998899999999854
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=4.9e-09 Score=75.30 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=38.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~ 149 (153)
..-.||||+..+.. ++.+.+|||.|+..||.+|++ ..||+||+.....
T Consensus 21 ~~~~C~IC~~~~~~------pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILRE------PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSS------CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhC------ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 34579999988843 333348999999999999998 7899999987543
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.59 E-value=1.3e-08 Score=69.12 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=37.3
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 148 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~ 148 (153)
...||||..+++..+ -.+...+|||.|+..||.++++. +..||+||+....
T Consensus 11 ~~~CpICle~~~~~d---~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEIDD---INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCTTT---TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCcCCccCccCcccc---ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 357999999884331 01112359999999999998854 5689999998654
No 55
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.53 E-value=6.3e-08 Score=66.35 Aligned_cols=48 Identities=8% Similarity=-0.120 Sum_probs=40.0
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 149 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~ 149 (153)
.-.||||+..+.. + +.++|||+|.+.||.+|++.+.+||+||.+....
T Consensus 14 ~~~CpI~~~~m~d------P-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 14 EFRDPLMDTLMTD------P-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred heECcccCchhcC------C-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4579999988844 3 5566999999999999999889999999886543
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.52 E-value=1.5e-08 Score=75.69 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=37.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREW 146 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w 146 (153)
..-.||||+..+.. + +.+.|||.|+..||.+|++... +||+||.+-
T Consensus 30 ~~~~C~IC~~~~~~------p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR------P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC------c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34579999988743 3 5579999999999999998765 899999864
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=1.7e-08 Score=63.83 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=37.8
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 152 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~ 152 (153)
.-.|+||+..+.. ++.++|||.|+..||.+| ...||+||++..+...|
T Consensus 6 ~~~C~IC~~~~~~-------p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~ 53 (56)
T 1bor_A 6 FLRCQQCQAEAKC-------PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADT 53 (56)
T ss_dssp CSSCSSSCSSCBC-------CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSSC
T ss_pred CCCceEeCCccCC-------eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCCcC
Confidence 3469999988743 256789999999999884 67899999998765443
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.51 E-value=3.3e-08 Score=64.13 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=23.3
Q ss_pred eechHHHHHHHcC--CCCCCCCCCCccc
Q psy16471 123 AFHFHCISRWLKT--RQVCPLDNREWEF 148 (153)
Q Consensus 123 ~FH~~CI~~Wl~~--~~~CP~Cr~~w~~ 148 (153)
.||..||.+|+.. +.+||+|+.++.+
T Consensus 32 ~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 32 NVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred hhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 8999999999986 5789999999875
No 59
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=1.8e-08 Score=66.69 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=39.0
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
..+.|+||++.+.+.. .++.-.|+|.||..|+.+|. .+..||+|++.+...
T Consensus 22 ~~~~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ---------------LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTC---------------EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCC---------------eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4578999999886421 11223499999999999997 677999999988553
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.49 E-value=5.8e-08 Score=83.84 Aligned_cols=46 Identities=28% Similarity=0.594 Sum_probs=39.2
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCCCCCccc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWEF 148 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~w~~ 148 (153)
..|+||...+. .++.++|||.||..||.+|++ ...+||+||++...
T Consensus 333 ~~C~ICle~~~-------~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK-------DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC-------CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCC-------CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 58999998873 346789999999999999999 67889999998654
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.49 E-value=1e-07 Score=67.44 Aligned_cols=47 Identities=9% Similarity=-0.117 Sum_probs=39.4
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~ 148 (153)
.-.||||+..+.+ + +.++|||+|.+.||.+|+..+.+||+||.+...
T Consensus 29 ~~~CpI~~~~m~d------P-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 29 EFRDPLMDTLMTD------P-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTBCTTTCSBCSS------E-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred hhCCcCccCcccC------C-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4579999988744 3 455699999999999999988999999988654
No 62
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.47 E-value=9e-08 Score=67.48 Aligned_cols=48 Identities=13% Similarity=-0.010 Sum_probs=40.2
Q ss_pred cCccccccccccCCCCccceEEeeeec-ceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCN-HAFHFHCISRWLKTRQVCPLDNREWEFQ 149 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~-H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~ 149 (153)
.-.||||+..+.+ + +.++|| |+|.+.||.+|++.+.+||+||.+....
T Consensus 22 ~~~CpI~~~~m~d------P-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 22 EFLDPIMSTLMCD------P-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTBCTTTCSBCSS------E-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred hcCCcCccccccC------C-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4579999988844 3 557899 9999999999999989999999986543
No 63
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.45 E-value=6.6e-08 Score=59.96 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=36.9
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
.+.|+||.+.+.+.. -+.....|+|.||..|+.+|. .+..||+|+..+
T Consensus 5 ~~~C~IC~~~~~~~~--------------~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELEDGE--------------EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCTTS--------------CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcCccCCccccCCC--------------ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 478999999886421 112223599999999999997 778899999876
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.40 E-value=1.1e-07 Score=71.96 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=39.2
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF 148 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~ 148 (153)
..-.||||...+.. + +.++|||.|+..||.+|++.++ +||+||.+...
T Consensus 17 ~~~~C~IC~~~~~~------p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALRE------A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcC------c-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 44579999988743 3 4478999999999999998754 89999998654
No 65
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.39 E-value=8.2e-08 Score=63.93 Aligned_cols=43 Identities=19% Similarity=0.397 Sum_probs=35.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
....|+||...+.. ++.++|||. |+..|+.+| ..||+||++..
T Consensus 23 ~~~~C~iC~~~~~~-------~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-------IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCC-------EEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCC-------EEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 34679999987632 356799999 999999999 78999999864
No 66
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.39 E-value=7.2e-08 Score=62.53 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=38.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
.+.|+||+..+.+.. .++.-.|+|.||..|+.+|. ....||+|+..+...
T Consensus 14 ~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 14 EEKCTICLSILEEGE---------------DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSBTTTTBCCCSSS---------------CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCeeCCccccCCC---------------cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 578999999885311 11223599999999999997 677899999998554
No 67
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.37 E-value=1e-07 Score=58.94 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=38.3
Q ss_pred ccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471 42 IVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ 105 (153)
Q Consensus 42 ~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~ 105 (153)
...+.|+||++.+.+.. . .++...|+|.||..|+.+|. ....||+|+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~-------------~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSR-------------V-VAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTT-------------S-CEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCC-------------c-CeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 34678999999885411 0 22344699999999999997 568999999886
No 68
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=1.9e-07 Score=64.95 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=36.1
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC------CCCCC--CCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR------QVCPL--DNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~------~~CP~--Cr~~ 145 (153)
.-.||||+..+.. +++...|||+|.+.||.+|++.+ .+||+ |+..
T Consensus 7 ~~~CPI~~~~~~d------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKK------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSS------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcC------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4579999988843 44444699999999999999864 48999 9865
No 69
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=7.3e-08 Score=63.31 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=38.2
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~ 107 (153)
..+.|+||++.+.+.-. .+.-.|+|.||..|+.+|. ....||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~---------------~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDE---------------LGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSC---------------EEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCc---------------EEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45789999999864211 1112499999999999997 66799999998844
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.35 E-value=7.3e-08 Score=82.47 Aligned_cols=30 Identities=27% Similarity=0.640 Sum_probs=25.9
Q ss_pred eeecceechHHHHHHHcCC-----------CCCCCCCCCcc
Q psy16471 118 GVCNHAFHFHCISRWLKTR-----------QVCPLDNREWE 147 (153)
Q Consensus 118 ~~C~H~FH~~CI~~Wl~~~-----------~~CP~Cr~~w~ 147 (153)
.+|+|.||..||.+||++. ++||+||++..
T Consensus 332 ~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 332 AKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp TTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 5799999999999999863 56999998754
No 71
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.33 E-value=1.4e-07 Score=62.51 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=38.6
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
....|+||++.|.+.- ..+.-.|+|.||..|+.+|. ....||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGE---------------SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTS---------------CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCC---------------CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3578999999886421 11122499999999999997 667999999988543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.30 E-value=4.5e-07 Score=73.35 Aligned_cols=52 Identities=19% Similarity=0.629 Sum_probs=42.5
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC--CCCCCCCCccccccC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNREWEFQKYG 152 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~--~CP~Cr~~w~~~~~~ 152 (153)
-..|.+|...+..+ -.| ..|+|.||.+|+.+|+++++ .||.|+.+|..+...
T Consensus 180 i~~C~iC~~iv~~g--~~C----~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSC----ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSC--EEC----SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCC--ccc----CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 56799999988754 223 34999999999999999865 899999999987653
No 73
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.27 E-value=1.2e-07 Score=65.21 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=37.5
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
....|+||++.+.+. + .++.-.|+|.||..|+.+|. .+..||+|+..+.
T Consensus 39 ~~~~C~IC~~~~~~~-------------~--~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG-------------D--VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTT-------------C--EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCC-------------C--cEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 456899999888542 1 11223499999999999997 7779999998873
No 74
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=8.2e-07 Score=70.65 Aligned_cols=47 Identities=6% Similarity=-0.103 Sum_probs=38.0
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF 148 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~ 148 (153)
.-.||||...+.. + +.++|||+|.+.||.+|++.++ +||+||.+...
T Consensus 208 ~~~c~i~~~~~~d------P-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 208 YLCGKISFELMRE------P-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp TTBCTTTCSBCSS------E-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred ccCCcCcCCHhcC------C-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3469999988843 3 4567999999999999998754 59999998654
No 75
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=3.8e-07 Score=58.51 Aligned_cols=53 Identities=17% Similarity=0.431 Sum_probs=39.3
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
....|+||++.+.+.... .-.++...|+|.||..|+.+|. ....||+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTT-----------TCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccc-----------cCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 357899999998753110 0012345699999999999997 6779999998874
No 76
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.14 E-value=3.9e-07 Score=59.00 Aligned_cols=55 Identities=16% Similarity=0.415 Sum_probs=40.7
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
....|+||++.+.+.-.. .-..+...|+|.||..|+.+|. ....||+|+..+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTT-----------TCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccc-----------cCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 457899999998753100 0122345799999999999997 677999999998543
No 77
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=9.3e-07 Score=58.69 Aligned_cols=42 Identities=19% Similarity=0.432 Sum_probs=33.3
Q ss_pred cCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
...|+||+..+.. ++.++|||. |+..|+.+ ...||+||++..
T Consensus 25 ~~~C~IC~~~~~~-------~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 25 EKLCKICMDRNIA-------IVFVPCGHLVTCKQCAEA----VDKCPMCYTVIT 67 (75)
T ss_dssp HHSCSSSCSSCCC-------BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCC
T ss_pred CCCCCcCCCCCCC-------EEEecCCCHHHHHHHhhC----CCCCccCCceec
Confidence 4579999987633 356799999 99999964 378999999854
No 78
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.09 E-value=5.5e-07 Score=56.91 Aligned_cols=54 Identities=17% Similarity=0.453 Sum_probs=40.3
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
...|+||++.+.+.... + -..+...|+|.||..|+.+|. ....||+|+..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~----------~-~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQN----------G-RLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHT----------T-CCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCcccc----------C-CCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 46899999998753210 0 012345699999999999997 677999999998654
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=57.30 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=36.9
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
....|+||++.+.+. +.-.|+|.||..|+.+|. ....||+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP------------------VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE------------------EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC------------------EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 357899999888642 122599999999999997 6679999999874
No 80
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1.1e-06 Score=59.97 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=36.4
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccc-----cceeeeeccccc---ccCccccccccccC
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCN-----HAFHFHCISRNH---IMDLCIECQANQAS 107 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~-----H~fh~~c~~~w~---~~~~CpiC~~~~~~ 107 (153)
.++.|.||++++.+... + ...|+ |.||..|+.+|+ ....||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~---------------l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESP---------------L-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSC---------------E-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCe---------------e-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45889999988753211 1 23475 999999999997 23589999999844
No 81
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.01 E-value=3.5e-06 Score=54.54 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=39.5
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 149 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~ 149 (153)
-.|||+.+.+.+ +++..++||+|-+.||.+||+.+++||+.+.+....
T Consensus 4 ~~CpIs~~~m~d------PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR------PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS------EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCC------CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 468999988853 444448999999999999999988999999886544
No 82
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.4e-06 Score=57.03 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=38.3
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
...|+||++.+.+. +....|+|.|+..|+.+|. ....||+|+..+...
T Consensus 15 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLIDA-----------------TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSSC-----------------EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHCc-----------------CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 46899999988651 1223699999999999997 677999999998554
No 83
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=1e-06 Score=57.17 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=37.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
...|+||++.+.+ +.-.|+|.||..|+.+|. ....||+|+..+...
T Consensus 15 ~~~C~IC~~~~~~-------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD-------------------LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS-------------------EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC-------------------cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 5789999988754 123599999999999997 688999999988543
No 84
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.94 E-value=6.6e-06 Score=64.09 Aligned_cols=49 Identities=6% Similarity=-0.113 Sum_probs=39.1
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCcccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEFQ 149 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~~ 149 (153)
..-.||||...+.. + +.++|||+|-+.||.+|+..+ .+||+|+.+....
T Consensus 105 ~~f~CPI~~elm~D------P-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMRE------P-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCC------C-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 34579999988853 3 555899999999999999875 4699999886543
No 85
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=5.5e-06 Score=54.43 Aligned_cols=43 Identities=21% Similarity=0.391 Sum_probs=34.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
....|+||+.... .+++++|||. |...|+.+ ...||+||++..
T Consensus 14 ~~~~C~IC~~~~~-------~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 14 NSKDCVVCQNGTV-------NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CSSCCSSSSSSCC-------CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCcCcCCC-------CEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 3567999987753 3477899999 99999994 478999999864
No 86
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=4.6e-06 Score=54.20 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=37.0
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC~~~~~~~ 108 (153)
...|+||++.+.+. ++ -.|+|.|+..|+.+|. ....||+|+..+...
T Consensus 20 ~~~C~IC~~~~~~~-----------------~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 20 EVICPICLDILQKP-----------------VT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCBCTTTCSBCSSE-----------------EE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CCEeccCCcccCCe-----------------EE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 46899999988642 11 2699999999999997 355899999998543
No 87
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=6.3e-06 Score=56.68 Aligned_cols=47 Identities=15% Similarity=0.363 Sum_probs=36.1
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--------CCCCC--CCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~ 145 (153)
.-.|+||...+.... .+.+..|||.|...||.++++.+ ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~----~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ----MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGG----EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccccc----ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 346999998875431 34445799999999999999751 36999 9987
No 88
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.88 E-value=3.6e-06 Score=56.81 Aligned_cols=43 Identities=23% Similarity=0.515 Sum_probs=34.4
Q ss_pred ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
....|+||..... .++.++|||. |...|+.+| ..||+||++..
T Consensus 17 ~~~~C~IC~~~~~-------~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEI-------NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBC-------CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccC-------cEEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 3457999987652 3467899999 999999987 38999999754
No 89
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.83 E-value=7.4e-06 Score=67.54 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=39.8
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCC--CCCCccc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPL--DNREWEF 148 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~--Cr~~w~~ 148 (153)
..-.||||+..+.. ++....|||+|.+.||.+|++.+ .+||+ ||+....
T Consensus 180 ~el~CPIcl~~f~D------PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA------PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS------EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC------CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45679999999844 55556999999999999999875 36999 9987554
No 90
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.78 E-value=4.3e-06 Score=55.11 Aligned_cols=45 Identities=24% Similarity=0.577 Sum_probs=35.4
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc---cCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI---MDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~---~~~CpiC~~~~ 105 (153)
...|+||++.+.+. +....|+|.|+..|+.+|.. ...||+|+..+
T Consensus 15 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMTDA-----------------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGSCSSSCCCCTTC-----------------EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCcCCChHHhCC-----------------eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 46899999988652 22234999999999999973 25899999975
No 91
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.76 E-value=7.3e-06 Score=60.19 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=36.6
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~ 107 (153)
..|+||.+.+.+. +.-.|||.||..|+.+|. ....||+|+.++..
T Consensus 54 ~~C~iC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIEA------------------VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSSE------------------EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCCc------------------eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3699999988652 123599999999999997 77889999998844
No 92
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.74 E-value=2.5e-05 Score=55.80 Aligned_cols=44 Identities=20% Similarity=0.383 Sum_probs=34.7
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcc
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 147 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~ 147 (153)
|+.|.-++.. -....+|+|+|..+|+..|.+. .++||+|+.+..
T Consensus 4 C~~C~~Pi~i------ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 4 CDKCGLPIKV------YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp CTTTCSBCSE------EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred cCccCCCeEE------EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 6667766632 3467889999999999999855 688999998854
No 93
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.73 E-value=7.3e-06 Score=56.61 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=37.4
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~ 107 (153)
...|+||.+.+.+. +....|+|.||..|+.+|. ....||+|+..+..
T Consensus 22 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA-----------------MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc-----------------CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 36899999988652 1123599999999999997 66799999998854
No 94
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.67 E-value=1e-05 Score=56.37 Aligned_cols=47 Identities=28% Similarity=0.468 Sum_probs=36.9
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-cc-CccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IM-DLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~-~~CpiC~~~~~~ 107 (153)
...|+||++.+.+. +..-.|+|.|+..|+.+|. .. ..||+|+..+..
T Consensus 22 ~~~C~IC~~~~~~p-----------------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDA-----------------RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCc-----------------cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 46799999998652 1114699999999999997 33 689999999843
No 95
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=1.4e-05 Score=53.42 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=37.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc----cCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI----MDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~----~~~CpiC~~~~~~~ 108 (153)
...|+||.+.+.+. +. ..+.-.|+|.||..|+.+|.. ...||+|+..+...
T Consensus 15 ~~~C~IC~~~~~~~-------------~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEE-------------QL-RPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTT-------------SS-CEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCccCCcccccc-------------CC-CeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 46799999988652 11 112336999999999999973 37899999987543
No 96
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.4e-05 Score=53.15 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=36.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
...|+||+..+.+. +.-.|+|.||..|+.+|. ....||+|+..+.
T Consensus 15 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNP------------------VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSE------------------EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCe------------------eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 35799999988652 123699999999999997 6778999999974
No 97
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.62 E-value=1.3e-05 Score=68.06 Aligned_cols=43 Identities=19% Similarity=0.422 Sum_probs=35.7
Q ss_pred ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
....|+||...+. .++.++|||. |+..|+.+| ..||+||++..
T Consensus 294 ~~~~C~IC~~~~~-------~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEV-------SVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBC-------CEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCC-------ceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 4567999998873 3466799999 999999998 67999999864
No 98
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=1.1e-05 Score=51.65 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=37.0
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~ 108 (153)
...|+||++.+.+. +.-.|+|.|+..|+.+|. .+..||+|+..+...
T Consensus 15 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP------------------KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CEECTTTCCEESSC------------------CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCCChHhcCe------------------eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 36799999888652 112699999999999997 567899999988543
No 99
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.60 E-value=1.9e-05 Score=55.37 Aligned_cols=48 Identities=25% Similarity=0.460 Sum_probs=38.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
...|+||+..+.+. +....|+|.|+..|+.+|. ....||+|+..+...
T Consensus 15 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFIDA-----------------TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSSE-----------------EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhCc-----------------CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 46899999988652 1223699999999999997 568999999998543
No 100
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=1.8e-05 Score=50.19 Aligned_cols=40 Identities=28% Similarity=0.521 Sum_probs=31.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIEC 101 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC 101 (153)
...|+||++.+.+. ++ -.|+|.|+..|+.+|. ....||+|
T Consensus 20 ~~~C~IC~~~~~~p-----------------~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP-----------------VT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC-----------------EE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCe-----------------EE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46899999988652 11 2699999999999997 34579987
No 101
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.55 E-value=1.9e-05 Score=51.80 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=36.1
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc--------cCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI--------MDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~--------~~~CpiC~~~~~~ 107 (153)
...|+||++.+.+.- .-.|+|.|+..|+.+|.. ...||+|+..+..
T Consensus 12 ~~~C~IC~~~~~~p~------------------~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEPL------------------SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSCC------------------CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCee------------------ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 467999999886521 125999999999999973 5689999998844
No 102
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=2.3e-05 Score=48.49 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=31.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIEC 101 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC 101 (153)
...|+||++.+.+. +.-.|+|.||..|+.+|. .+..||+|
T Consensus 15 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEP------------------VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSC------------------CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCcc------------------EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 47899999988652 112599999999999993 45679887
No 103
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.45 E-value=2.9e-05 Score=58.28 Aligned_cols=46 Identities=24% Similarity=0.441 Sum_probs=36.6
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS 107 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~ 107 (153)
..|+||+..+.+. +..-.|+|.||..|+.+|. ....||+|+..+..
T Consensus 55 ~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNT-----------------MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSE-----------------EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCc-----------------CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 5899999988752 1123699999999999997 37789999998843
No 104
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.45 E-value=3.1e-05 Score=51.09 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=36.5
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-c------cCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-I------MDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~------~~~CpiC~~~~~~ 107 (153)
...|+||+..+.+. + .-.|+|.|+..|+.+|. . ...||+|+..+..
T Consensus 19 ~~~C~IC~~~~~~p-----------------~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEP-----------------V-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSC-----------------E-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcc-----------------e-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 46899999988652 1 22599999999999996 3 6789999999854
No 105
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.43 E-value=4.4e-05 Score=50.21 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=45.9
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCCCccceEEeeeec
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTTSEECTVAWGVCN 121 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~ 121 (153)
.-.|+||++.|.+.- .-.|+|.|+..|+.+|. ....||+|+..+.... .+. +
T Consensus 8 ~~~C~IC~~~~~~Pv------------------~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~----l~~----n 61 (78)
T 1t1h_A 8 YFRCPISLELMKDPV------------------IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG----LTP----N 61 (78)
T ss_dssp SSSCTTTSCCCSSEE------------------EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC----CEE----C
T ss_pred cCCCCCccccccCCE------------------EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh----Ccc----C
Confidence 457999999887531 12599999999999997 3678999999985431 110 2
Q ss_pred ceechHHHHHHHcCCC
Q psy16471 122 HAFHFHCISRWLKTRQ 137 (153)
Q Consensus 122 H~FH~~CI~~Wl~~~~ 137 (153)
+. -..=|++|++.++
T Consensus 62 ~~-l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 62 YV-LKSLIALWCESNG 76 (78)
T ss_dssp TT-THHHHHHHHHHSC
T ss_pred HH-HHHHHHHHHHHcC
Confidence 22 2445677766543
No 106
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.40 E-value=4.2e-05 Score=54.85 Aligned_cols=46 Identities=20% Similarity=0.477 Sum_probs=36.5
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~ 107 (153)
...|+||...+.+. +.-.|+|.|+..|+.+|. ....||+|+..+..
T Consensus 52 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP------------------ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE------------------EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc------------------EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 35799999988652 112699999999999997 44589999999854
No 107
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.40 E-value=5.5e-05 Score=53.88 Aligned_cols=46 Identities=26% Similarity=0.475 Sum_probs=36.9
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~ 107 (153)
.-.|+||++.+.+. +....|+|.|+..|+.+|.. ..||+|+..+..
T Consensus 22 ~~~C~IC~~~~~~p-----------------v~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP-----------------VCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC-----------------BCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc-----------------cEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCcc
Confidence 46899999988652 12226999999999999987 889999998843
No 108
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=5.3e-05 Score=49.92 Aligned_cols=46 Identities=24% Similarity=0.491 Sum_probs=36.4
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-c------cCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-I------MDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~------~~~CpiC~~~~~~ 107 (153)
...|+||+..+.+.- .-.|+|.|+..|+.+|. . ...||+|+..+..
T Consensus 19 ~~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQPL------------------SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSCB------------------CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCce------------------eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 468999999886521 12599999999999996 3 6789999998854
No 109
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.34 E-value=6.3e-05 Score=53.13 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=35.8
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCcccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQA 106 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~ 106 (153)
+..|+||...+.+. + .-.|+|.|+..|+.+|. ....||+|+..+.
T Consensus 15 ~~~C~iC~~~~~~p-----------------~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEP-----------------V-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSC-----------------E-ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCce-----------------e-EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 46799999888642 1 12699999999999997 3678999999874
No 110
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.32 E-value=4.7e-05 Score=53.53 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=46.0
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc------ccCccccccccccC
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH------IMDLCIECQANQAS 107 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~------~~~~CpiC~~~~~~ 107 (153)
.++.|+||++.|.+...................+...|+|.||.+|+.+|+ ....||+|+..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999999876544333222222223344467899999999999997 25689999999843
No 111
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.29 E-value=0.00012 Score=45.74 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=35.6
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccCCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTT 109 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~~~ 109 (153)
.-.|+||+..+.+. +.-.|+|+|+..|+.+| ...||+|++.+...+
T Consensus 6 ~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~--~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 6 FLRCQQCQAEAKCP------------------KLLPCLHTLCSGCLEAS--GMQCPICQAPWPLGA 51 (56)
T ss_dssp CSSCSSSCSSCBCC------------------SCSTTSCCSBTTTCSSS--SSSCSSCCSSSSCCS
T ss_pred CCCceEeCCccCCe------------------EEcCCCCcccHHHHccC--CCCCCcCCcEeecCC
Confidence 45799999988652 11249999999999884 678999999985543
No 112
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.26 E-value=5.2e-05 Score=52.86 Aligned_cols=46 Identities=22% Similarity=0.461 Sum_probs=35.5
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccccc----CccccccccccCC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIM----DLCIECQANQAST 108 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~----~~CpiC~~~~~~~ 108 (153)
..|+||+..+.+.- .-.|+|.|+..|+.+|... ..||+|+..+...
T Consensus 22 ~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPICLELIKEPV------------------STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSSSCCCCSSCC------------------BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCcccChhhcCeE------------------ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 47999999886421 1259999999999999733 3899999988543
No 113
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.24 E-value=5.3e-05 Score=51.34 Aligned_cols=45 Identities=24% Similarity=0.528 Sum_probs=35.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~ 105 (153)
.-.|+||.+.|.+. +....|+|.|...|+.+|. ....||+|+..+
T Consensus 13 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDA-----------------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSSC-----------------EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcCc-----------------eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 35799999888652 2222399999999999996 346899999987
No 114
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.21 E-value=0.00011 Score=49.44 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=36.3
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceecc--ccccceeeeeccccc--ccCccccccccccCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWG--VCNHAFHFHCISRNH--IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g--~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~ 108 (153)
+.+|+||.+++....+. .. .|||.|...|+.++. ....||+|+..+...
T Consensus 11 ~~~CpICle~~~~~d~~----------------~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDIN----------------FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCBCTTTCCBCCTTTTT----------------CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCcCCccCccCcccccc----------------ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 35899999987532110 11 399999999998874 567899999998654
No 115
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.12 E-value=0.00012 Score=51.75 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=36.8
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~ 107 (153)
...|+||++.+.+. +.-.|+|.|+..|+.+|. ....||+|+..+..
T Consensus 23 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADP------------------VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCc------------------EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 36799999988652 113699999999999997 36789999999854
No 116
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.06 E-value=0.00016 Score=54.04 Aligned_cols=46 Identities=17% Similarity=0.413 Sum_probs=36.1
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAST 108 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~ 108 (153)
..|+||++.+.+.- .-.|+|.|+..|+.+|. ....||+|+..+...
T Consensus 79 ~~C~IC~~~~~~pv------------------~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPV------------------TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEE------------------ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCE------------------EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 47999998886521 23699999999999997 334899999998543
No 117
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.92 E-value=0.00012 Score=46.72 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=37.7
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
..+.|+||++.+.+. .+...|+|.||..|+.+|. ....||+|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~-----------------~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY-----------------SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC-----------------EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC-----------------cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 457899999987541 1234599999999999997 6789999998874
No 118
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.90 E-value=0.00022 Score=50.70 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=36.0
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~ 107 (153)
.-.|+||...+.+. +.-.|+|.|+..|+.+|. ....||+|+..+..
T Consensus 18 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALREA------------------VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChhhcCe------------------EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 35799999888652 122599999999999997 33499999998854
No 119
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.38 E-value=0.00096 Score=43.82 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=34.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~ 107 (153)
...|+||.+.+.+. +.-.|+|. |...|+.+| ..||+|+..+..
T Consensus 24 ~~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI------------------VFVPCGHLVTCKQCAEAV---DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE------------------EEETTCCBCCCHHHHTTC---SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE------------------EEcCCCChhHHHHhhhcC---ccCCCcCcCccC
Confidence 46899999887542 22369999 999999999 899999998843
No 120
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.36 E-value=0.00081 Score=57.97 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=36.6
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS 107 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~ 107 (153)
..|+||.+.+.+. +.-.|+|.||..|+.+|. ....||+|+..+..
T Consensus 333 ~~C~ICle~~~~p------------------v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKDV------------------KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCCE------------------EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCCCe------------------EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 5899998887542 234699999999999997 47899999998844
No 121
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.36 E-value=0.00052 Score=50.83 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=48.1
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCCCccceEEeeeecc
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTTSEECTVAWGVCNH 122 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~H 122 (153)
-.|+||+..+.+. +.-.|+|.|...|+.+|. ....||+|+.+.....+. ..+.=..
T Consensus 32 ~~C~IC~~~~~~p------------------v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~----~~l~~~~ 89 (141)
T 3knv_A 32 YLCSACRNVLRRP------------------FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGI----SILESSS 89 (141)
T ss_dssp GBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTT----TEECGGG
T ss_pred cCCCCCChhhcCc------------------EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccc----cccchhh
Confidence 5799999988653 123699999999999997 335899999976332110 1111235
Q ss_pred eechHHHHHHHcC-CCCCCC
Q psy16471 123 AFHFHCISRWLKT-RQVCPL 141 (153)
Q Consensus 123 ~FH~~CI~~Wl~~-~~~CP~ 141 (153)
+|-...+.+=+.. ...||.
T Consensus 90 ~~~d~~~~~~i~~L~v~Cpn 109 (141)
T 3knv_A 90 AFPDNAARREVESLPAVCPS 109 (141)
T ss_dssp CEECHHHHHHHHTSEEECCS
T ss_pred hcccHHHHHHHcccccccCC
Confidence 5655566555543 345764
No 122
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.19 E-value=0.0015 Score=52.63 Aligned_cols=49 Identities=20% Similarity=0.630 Sum_probs=37.6
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccccccccCCC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQASTT 109 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~~~~~ 109 (153)
...|+||+.-+.- +..|+ .|+|.||.+|+.+|. ....||.|..+|....
T Consensus 180 i~~C~iC~~iv~~-------------g~~C~----~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQ-------------GQSCE----TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSS-------------CEECS----SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhC-------------CcccC----ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 4679999887652 33443 399999999999996 4569999999996653
No 123
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.05 E-value=0.0016 Score=41.25 Aligned_cols=51 Identities=18% Similarity=0.425 Sum_probs=37.1
Q ss_pred Ccccccccc-ccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCC
Q psy16471 44 VDNCAICRN-HIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAST 108 (153)
Q Consensus 44 ~d~C~IC~~-~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~ 108 (153)
+..|+||++ .+.+... ..+...|||.|+..|+.+|. ....||+|+..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~--------------~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSL--------------KLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSC--------------CEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCcc--------------CeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 467999998 5644211 11234699999999999994 456799999998544
No 124
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.99 E-value=0.0017 Score=41.48 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=36.5
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeeccccc-ccCcccccccccc
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
..+.|.||.+...+. ..+.+.|+|. |-..|..++. ....||+|++++.
T Consensus 6 ~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG----------------NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE----------------EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe----------------EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 357899998876542 2334579998 8899998886 5578999999984
No 125
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.80 E-value=0.0021 Score=41.20 Aligned_cols=48 Identities=19% Similarity=0.449 Sum_probs=35.4
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeeccccc-ccCcccccccccc
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNH-IMDLCIECQANQA 106 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~-~~~~CpiC~~~~~ 106 (153)
.++.|.||.+...+. ..+.+.|+|. |=..|..+|. ....||+|++++.
T Consensus 7 ~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG----------------CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE----------------EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE----------------EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 346799998876542 1123469999 5579999886 6678999999884
No 126
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.79 E-value=0.0032 Score=44.00 Aligned_cols=67 Identities=9% Similarity=-0.053 Sum_probs=48.3
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCCCCccceEEeeeecc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQASTTSEECTVAWGVCNH 122 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~~~~~c~~~~~~C~H 122 (153)
.-.|+||+.-|.|+- +. .|||+|-..||.+|. ....||+|+.++.... .+ = -
T Consensus 29 ~~~CpI~~~~m~dPV-----------------~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~----L~----p-n 81 (100)
T 2kre_A 29 EFRDPLMDTLMTDPV-----------------RL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESM----LE----P-V 81 (100)
T ss_dssp TTBCTTTCSBCSSEE-----------------EE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS----SE----E-C
T ss_pred hhCCcCccCcccCCe-----------------EC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhh----ce----E-C
Confidence 468999999998732 22 399999999999997 6789999999985431 11 1 1
Q ss_pred eechHHHHHHHcCCC
Q psy16471 123 AFHFHCISRWLKTRQ 137 (153)
Q Consensus 123 ~FH~~CI~~Wl~~~~ 137 (153)
..-..=|.+|++.+.
T Consensus 82 ~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 82 PELKEQIQAWMREKQ 96 (100)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 234567888887653
No 127
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.74 E-value=0.0026 Score=42.98 Aligned_cols=46 Identities=7% Similarity=-0.166 Sum_probs=37.3
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~ 107 (153)
.-.|+||+.-|.|+- +. .|||+|-..||.+|. ....||+|++.+..
T Consensus 14 ~~~CpI~~~~m~dPV-----------------~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 14 EFRDPLMDTLMTDPV-----------------RL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTBCTTTCSBCSSEE-----------------EC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred heECcccCchhcCCe-----------------EC-CCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 467999999998732 22 399999999999997 67899999998844
No 128
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.63 E-value=0.0029 Score=47.38 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=35.9
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS 107 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~ 107 (153)
-.|+||...+.++ +.-.|+|.|...|+.+|. ....||+|+..+..
T Consensus 19 ~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALREA------------------VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhcCc------------------EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 5799999988652 123599999999999997 34599999988754
No 129
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=95.40 E-value=0.01 Score=41.80 Aligned_cols=84 Identities=19% Similarity=0.413 Sum_probs=52.3
Q ss_pred cccCccccccccccccch-hhhhcCCCCCCccccceeccccccceeeeecccccc-----cC------ccccccccccCC
Q psy16471 41 DIVVDNCAICRNHIMDLC-IECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI-----MD------LCIECQANQAST 108 (153)
Q Consensus 41 d~~~d~C~IC~~~~~d~c-~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~-----~~------~CpiC~~~~~~~ 108 (153)
+..+|.|.||.......- +.| ..|..+||..|+..... .- .|.+|...-.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C----------------~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~-- 65 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFC----------------TTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGE-- 65 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEEC----------------SSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSC--
T ss_pred CCCCCCCcCCCCCCCCcCCeEC----------------CCCCCCcChHHhCCccccccccCccCCcCCcccccCccCC--
Confidence 345789999976543100 111 35889999999955431 11 3555554432
Q ss_pred CCccceEEeeeecceechHHHHHHHcCC----CCCCCCCC
Q psy16471 109 TSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNR 144 (153)
Q Consensus 109 ~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~ 144 (153)
++-.+.-..|...||..|+..=|... =.||.|+.
T Consensus 66 --~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 66 --DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp --CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred --CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 22367778899999999998655442 24777754
No 130
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.09 E-value=0.0067 Score=39.63 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=33.2
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~ 107 (153)
...|+||++.+.+. +.-.|+|. |...|+.+. ..||+|+..+..
T Consensus 25 ~~~C~IC~~~~~~~------------------~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI------------------VFVPCGHLVTCKQCAEAV---DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB------------------CCSSSCCCCBCHHHHHHC---SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE------------------EEecCCCHHHHHHHhhCC---CCCccCCceecC
Confidence 35799998887542 12359999 999999643 789999999854
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.01 E-value=0.0069 Score=47.66 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=45.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCCCccceEEeeeec
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTTSEECTVAWGVCN 121 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~ 121 (153)
.-.|+||..-|.|+.+ -.|||+|-..||.+|. ....||+|+.++.... .+ =+
T Consensus 208 ~~~c~i~~~~~~dPv~------------------~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~----l~----~n 261 (281)
T 2c2l_A 208 YLCGKISFELMREPCI------------------TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ----LI----PN 261 (281)
T ss_dssp TTBCTTTCSBCSSEEE------------------CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG----CE----EC
T ss_pred ccCCcCcCCHhcCCeE------------------CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc----Cc----cc
Confidence 3579999999987422 2499999999999997 3445999999884321 11 12
Q ss_pred ceechHHHHHHHcCCC
Q psy16471 122 HAFHFHCISRWLKTRQ 137 (153)
Q Consensus 122 H~FH~~CI~~Wl~~~~ 137 (153)
+.. ..=|.+|+..++
T Consensus 262 ~~l-~~~i~~~~~~~~ 276 (281)
T 2c2l_A 262 LAM-KEVIDAFISENG 276 (281)
T ss_dssp HHH-HHHHHHHHTTCS
T ss_pred HHH-HHHHHHHHHHCC
Confidence 222 346778887653
No 132
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.00 E-value=0.0092 Score=41.45 Aligned_cols=66 Identities=14% Similarity=-0.028 Sum_probs=47.6
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccc-cceeeeeccccc-ccCccccccccccCCCCccceEEeeeec
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCN-HAFHFHCISRNH-IMDLCIECQANQASTTSEECTVAWGVCN 121 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~-H~fh~~c~~~w~-~~~~CpiC~~~~~~~~~~~c~~~~~~C~ 121 (153)
+-.|+||+.-|.|+-+ -.|+ |.|-..||.+|. ....||+|++.+.... .+ =
T Consensus 22 ~~~CpI~~~~m~dPV~------------------~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~----L~----p- 74 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVV------------------LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ----IR----P- 74 (98)
T ss_dssp TTBCTTTCSBCSSEEE------------------CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT----SE----E-
T ss_pred hcCCcCccccccCCeE------------------CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh----ce----E-
Confidence 4689999999987422 2478 999999999997 5778999999985431 11 1
Q ss_pred ceechHHHHHHHcCC
Q psy16471 122 HAFHFHCISRWLKTR 136 (153)
Q Consensus 122 H~FH~~CI~~Wl~~~ 136 (153)
-..-..=|.+|++.+
T Consensus 75 n~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 75 NTELKEKIQRWLAER 89 (98)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHc
Confidence 223456788888764
No 133
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.81 E-value=0.0053 Score=42.04 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=33.9
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc-------cCcccc--cccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI-------MDLCIE--CQAN 104 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~-------~~~Cpi--C~~~ 104 (153)
.-.|+||+..|.|+ +..-.|||+|-..||.+|.. ...||+ |...
T Consensus 7 ~~~CPI~~~~~~dP-----------------V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKP-----------------VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSE-----------------EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCC-----------------EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45799999998763 22225999999999999973 248999 8765
No 134
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=93.18 E-value=0.043 Score=46.28 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=34.7
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~ 107 (153)
+..|+||...+.+. +.-.|+|. |...|+.+| ..||+|+..+..
T Consensus 295 ~~~C~IC~~~~~~~------------------v~lpCgH~~fC~~C~~~~---~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV------------------VFIPCGHLVVCQECAPSL---RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCCE------------------EEETTCCEEECTTTGGGC---SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCce------------------EEcCCCChhHhHHHHhcC---CcCCCCCCCccC
Confidence 46899999887642 12269999 999999998 799999999843
No 135
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=93.12 E-value=0.028 Score=36.94 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=22.5
Q ss_pred eEEeeeecceechHHHHHHHcC-----CCCCCCCCCC
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNRE 145 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~ 145 (153)
.+.--.|...||..|+..=|.. .=.||.|+++
T Consensus 33 ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 33 QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp EEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred EEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 6666678999999999843332 1269999864
No 136
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=92.76 E-value=0.022 Score=40.41 Aligned_cols=63 Identities=17% Similarity=0.429 Sum_probs=41.0
Q ss_pred ccccceeeeeccc------------cc--ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCC
Q psy16471 79 VCNHAFHFHCISR------------NH--IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCP 140 (153)
Q Consensus 79 ~C~H~fh~~c~~~------------w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP 140 (153)
.|+.+||.-|+.- |. .=..|.+|...-. .++-.+.-..|...||..|+..=|..- =.||
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~---~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~ 107 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGK---NADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQ 107 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCC---TTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCT
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCC---CccceEEcCCCCCeeecccCCCCCCCCCCCCeECC
Confidence 4899999999853 22 1114666665321 122366677899999999997655442 2699
Q ss_pred CCCC
Q psy16471 141 LDNR 144 (153)
Q Consensus 141 ~Cr~ 144 (153)
.|+.
T Consensus 108 ~C~~ 111 (112)
T 3v43_A 108 ICRP 111 (112)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9975
No 137
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=92.57 E-value=0.045 Score=36.28 Aligned_cols=43 Identities=16% Similarity=0.468 Sum_probs=33.0
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~ 107 (153)
...|.||.+.+.+. +...|+|. |-..|+.++. .||+|+..+..
T Consensus 18 ~~~C~IC~~~~~~~------------------v~~pCgH~~~C~~C~~~~~---~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS------------------TFCPCGHTVCCESCAAQLQ---SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE------------------EEETTCBCCBCHHHHTTCS---BCTTTCCBCCE
T ss_pred CCEeEEeCcccCcE------------------EEECCCCHHHHHHHHHhcC---cCCCCCchhhC
Confidence 35799998876542 23469999 8899998873 99999998843
No 138
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.32 E-value=0.053 Score=34.99 Aligned_cols=43 Identities=19% Similarity=0.526 Sum_probs=32.8
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS 107 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~ 107 (153)
...|.||+....+ .+...|+|. |-..|..+ ...||+|++.+..
T Consensus 15 ~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~---~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 15 SKDCVVCQNGTVN------------------WVLLPCRHTCLCDGCVKY---FQQCPMCRQFVQE 58 (68)
T ss_dssp SSCCSSSSSSCCC------------------CEETTTTBCCSCTTHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCCcCcCCCC------------------EEEECCCChhhhHHHHhc---CCCCCCCCcchhc
Confidence 4689999887654 223459998 99999884 4789999998844
No 139
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.95 E-value=0.057 Score=44.36 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=36.3
Q ss_pred cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc---cCcccc--ccccccC
Q psy16471 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI---MDLCIE--CQANQAS 107 (153)
Q Consensus 43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~---~~~Cpi--C~~~~~~ 107 (153)
..-+|+||...|.++. .--.|||.|-..||.+|.. ...||+ |++.+..
T Consensus 180 ~el~CPIcl~~f~DPV-----------------ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPL-----------------ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEE-----------------EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCe-----------------eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3458999999997732 1126999999999999863 357999 9987743
No 140
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=90.88 E-value=0.033 Score=47.73 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=37.8
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc------------cCccccccccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI------------MDLCIECQANQ 105 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~------------~~~CpiC~~~~ 105 (153)
...|+||.+.+.+ .+..|...|. -..|+|.||..|+.+|.. ...||.|++++
T Consensus 308 ~~ECaICys~~l~--------~g~lPdk~C~--n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 308 ELRCNICFAYRLD--------GGEVPLVSCD--NAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCSCSSSCCSSCT--------TCCCCCBCCS--CTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred CccCcccceeecC--------CCCCcccccc--CCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 3579999988764 2334455551 136999999999999961 16799999886
No 141
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=90.36 E-value=0.084 Score=40.72 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=45.9
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc--cCccccccccccCCCCccceEEeeeecc
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI--MDLCIECQANQASTTSEECTVAWGVCNH 122 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~--~~~CpiC~~~~~~~~~~~c~~~~~~C~H 122 (153)
-.|+||..-|.|+-+ -.|||+|-..||.+|.. ...||+|+.++.... .+ = .
T Consensus 107 f~CPI~~elm~DPV~------------------~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~----L~----p-N 159 (179)
T 2f42_A 107 LCGKISFELMREPCI------------------TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ----LI----P-N 159 (179)
T ss_dssp GBCTTTCSBCSSEEE------------------CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG----CE----E-C
T ss_pred hcccCccccCCCCeE------------------CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh----Cc----c-h
Confidence 579999999887422 25899999999999972 346999999884431 11 1 2
Q ss_pred eechHHHHHHHcCCC
Q psy16471 123 AFHFHCISRWLKTRQ 137 (153)
Q Consensus 123 ~FH~~CI~~Wl~~~~ 137 (153)
..-..=|.+|+..++
T Consensus 160 ~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 160 LAMKEVIDAFIQENG 174 (179)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCC
Confidence 235567788876653
No 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=89.48 E-value=0.17 Score=35.89 Aligned_cols=63 Identities=17% Similarity=0.387 Sum_probs=41.2
Q ss_pred ccccceeeeecccc------------c--ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCC
Q psy16471 79 VCNHAFHFHCISRN------------H--IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCP 140 (153)
Q Consensus 79 ~C~H~fh~~c~~~w------------~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP 140 (153)
.|..+||.-|+... . .=..|.+|...-.. .-.+.-..|...||..|+..=|..- =.||
T Consensus 28 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~----~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~ 103 (114)
T 2kwj_A 28 DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEND----DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCH 103 (114)
T ss_dssp SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTT----TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCH
T ss_pred CCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCC----CceEEcCCCCccccccccCCCccCCCCCCeECc
Confidence 48999999998543 1 11146666654322 2377778899999999998544332 1488
Q ss_pred CCCCC
Q psy16471 141 LDNRE 145 (153)
Q Consensus 141 ~Cr~~ 145 (153)
.|+..
T Consensus 104 ~C~~~ 108 (114)
T 2kwj_A 104 LCWEL 108 (114)
T ss_dssp HHHHH
T ss_pred cccch
Confidence 87654
No 143
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=89.21 E-value=0.098 Score=35.08 Aligned_cols=44 Identities=25% Similarity=0.535 Sum_probs=27.3
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHHHcCC-----CCCCCCCCC
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNRE 145 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-----~~CP~Cr~~ 145 (153)
|.+|...-.. +-.+.-..|...||..|+..=|... =.||.|+++
T Consensus 29 C~vC~~~~d~----~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 29 CHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp BTTTCCCSCG----GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCccCCCCCC----cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 5555544322 2366667899999999998554431 269998864
No 144
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.88 E-value=0.069 Score=33.86 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=33.4
Q ss_pred ccCccccccccccccchhhhhcCCCCCCccccceecccccc---ceeeeeccccc---ccCcccccccccc
Q psy16471 42 IVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNH---AFHFHCISRNH---IMDLCIECQANQA 106 (153)
Q Consensus 42 ~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H---~fh~~c~~~w~---~~~~CpiC~~~~~ 106 (153)
...+.|.||+.+..+. . .. -| .|.+ .||..|+.+|. .+..||+|+..|.
T Consensus 4 ~~~~~CrIC~~~~~~~-l--~~--------PC-----~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE-R--FR--------AC-----GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCC-C--CC--------SC-----CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCc-e--ec--------Cc-----CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3457899998763221 0 00 11 3445 89999999996 3678999999874
No 145
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.74 E-value=0.28 Score=31.79 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=33.2
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC----CCCCCCCCc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ----VCPLDNREW 146 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~----~CP~Cr~~w 146 (153)
...|.+|... + -.+.-..|...||..|+..-|..-. .||.|+++-
T Consensus 12 ~~~C~vC~~~---~----~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG---T----DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC---T----TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCC---C----eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3457888642 1 1667778999999999988887643 699998763
No 146
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.52 E-value=0.25 Score=29.82 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=29.3
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNR 144 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~ 144 (153)
.|.+|+..-..+ -.+.-..|...||..|+..=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~----~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD----KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS----CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC----CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 467777653222 266667899999999996544332 24999875
No 147
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.22 E-value=0.084 Score=35.56 Aligned_cols=46 Identities=15% Similarity=0.387 Sum_probs=31.8
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---------ccCcccc--cccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---------IMDLCIE--CQAN 104 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---------~~~~Cpi--C~~~ 104 (153)
.-+|+||.+.+.+.-. ..-..|+|.|-..|+.++. .+..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~---------------~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQM---------------TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGE---------------EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccc---------------eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4579999988764211 0112499999999997763 1347999 9877
No 148
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=87.61 E-value=0.26 Score=38.07 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=35.2
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHH------HHc-----CCCCCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR------WLK-----TRQVCPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~------Wl~-----~~~~CP~Cr~~ 145 (153)
..||+|..+|..+..+.-.|--..|..-||..|+.- =+. ..=.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 469999999966543333666678999999999842 111 13479999864
No 149
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.55 E-value=0.23 Score=33.15 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=30.3
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcC-----CCCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNRE 145 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~ 145 (153)
.|.+|...-..+ -.+.--.|...||..|+..=|.. .=.||.|+++
T Consensus 28 ~C~vC~~~~~~~----~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 28 SCRVCGGKHEPN----MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SCSSSCCCCCST----TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCcCcCCcCCCC----CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence 577787643222 26777789999999999843332 1259988763
No 150
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.49 E-value=0.82 Score=29.92 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=35.1
Q ss_pred cceeeeecccccccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCCC
Q psy16471 82 HAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNR 144 (153)
Q Consensus 82 H~fh~~c~~~w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~ 144 (153)
|.-|.|--+.......|.+|...-... ++-.+.--.|.-.||..|+.-=+.- .=.||.|+.
T Consensus 3 ~~~~~~~~~~~~~~~~C~vC~~~~s~~--~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 3 HHHHHHMQSLIDEDAVCSICMDGESQN--SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp -------CCCCCSSCSCSSSCCCCCCS--SSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cccccccccCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 444555556666788899998764221 1227777789999999999732211 114776653
No 151
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=84.64 E-value=0.27 Score=39.36 Aligned_cols=46 Identities=24% Similarity=0.505 Sum_probs=27.6
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CC---CCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQ---VCPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~---~CP~Cr~~ 145 (153)
-.|.+|...-..+ -.+.--.|...||..|+..=|.. .. .||.|+.+
T Consensus 175 c~C~vC~~~~~~~----~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPD----KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC------CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCC----CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3678887643222 26666789999999999854433 12 59999764
No 152
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=83.54 E-value=0.28 Score=31.00 Aligned_cols=47 Identities=11% Similarity=-0.122 Sum_probs=36.0
Q ss_pred ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST 108 (153)
Q Consensus 45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~ 108 (153)
-.|+|++..|.|+ ++.-.+||.|-..+|.+|. ....||+.++++...
T Consensus 4 ~~CpIs~~~m~dP-----------------V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP-----------------VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE-----------------EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC-----------------EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4699999888763 1222589999999999997 566799999887443
No 153
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.49 E-value=0.66 Score=29.26 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=21.5
Q ss_pred eEEeeeecceechHHHHHHHcCC----CCCCCCCCC
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTR----QVCPLDNRE 145 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 145 (153)
.+.--.|.-.||..|+..=+... =.||.|+++
T Consensus 23 ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 23 IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45555688888888888654432 258888764
No 154
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=82.07 E-value=0.76 Score=30.98 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=24.7
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHH-HH
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR-WL 133 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~-Wl 133 (153)
..|++|...+...+ +..-+.|+|.|...|+.+ |.
T Consensus 4 ~~C~~C~~~~~~~a----v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQDA----VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCBC----CEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCCc----eEECCcCChHHhHHHCHHHhc
Confidence 46899997643332 333388999999999998 54
No 155
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.99 E-value=0.47 Score=36.68 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=17.5
Q ss_pred eEEeeeecceechHHHHHHHcCC----CCCCCCCCC
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTR----QVCPLDNRE 145 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 145 (153)
.+.-..|...||..|+..-|..- =.||.|+..
T Consensus 19 ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 19 LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 33344566667777765544432 147777654
No 156
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.84 E-value=0.54 Score=35.53 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=20.2
Q ss_pred eEEeeeecceechHHHHHHHcCC----CCCCCCCCCcc
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 147 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~w~ 147 (153)
.+.-..|.-+||..|+..-|... =.||.|+..-+
T Consensus 16 ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 16 LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 33444577777777775554432 24888876543
No 157
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=77.90 E-value=0.98 Score=29.49 Aligned_cols=42 Identities=29% Similarity=0.656 Sum_probs=28.5
Q ss_pred CccccccccccCCCCccceEEeee--ec-ceechHHHHHHHcCC----CCCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGV--CN-HAFHFHCISRWLKTR----QVCPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~--C~-H~FH~~CI~~Wl~~~----~~CP~Cr~~ 145 (153)
..| +|+.... + -.|.--. |. ..||..|+. |... =.||.|++.
T Consensus 17 ~~C-~C~~~~~-g----~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 17 TYC-LCHQVSY-G----EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCS-TTCCCSC-S----SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CEE-ECCCCCC-C----CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 346 6887643 2 1655556 66 799999998 5543 259999875
No 158
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.12 E-value=0.36 Score=30.54 Aligned_cols=9 Identities=22% Similarity=1.169 Sum_probs=5.2
Q ss_pred Ccccccccc
Q psy16471 44 VDNCAICRN 52 (153)
Q Consensus 44 ~d~C~IC~~ 52 (153)
++.|.+|..
T Consensus 9 ~~~C~vC~~ 17 (61)
T 1mm2_A 9 MEFCRVCKD 17 (61)
T ss_dssp CSSCTTTCC
T ss_pred CCcCCCCCC
Confidence 455666653
No 159
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=74.97 E-value=2 Score=27.56 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=23.6
Q ss_pred ccCccccccccccCCCCccceEEee-eecceechHHHH
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWG-VCNHAFHFHCIS 130 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~-~C~H~FH~~CI~ 130 (153)
....|++|++++... +-.|.-- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~---~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDD---QDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTT---SCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCC---CCeEecccCccccCchhccC
Confidence 445799999998443 2244445 899999999973
No 160
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.86 E-value=4.9 Score=27.97 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=25.1
Q ss_pred ccCccccccccccCC--CCccceEEeeeecceechHHHH
Q psy16471 94 IMDLCIECQANQAST--TSEECTVAWGVCNHAFHFHCIS 130 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~--~~~~c~~~~~~C~H~FH~~CI~ 130 (153)
..+.|.+|+..-..+ ...+..+.-..|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456788887653221 1223477778899999999995
No 161
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=73.60 E-value=2.6 Score=30.78 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=23.5
Q ss_pred eEEeeeecceechHHHHHHH------cC-----CCCCCCCCCC
Q psy16471 114 TVAWGVCNHAFHFHCISRWL------KT-----RQVCPLDNRE 145 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl------~~-----~~~CP~Cr~~ 145 (153)
++.-..|-.+||..||..=+ +. .=.|++|+-+
T Consensus 69 LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 69 LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 55567899999999999752 11 2369999754
No 162
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.41 E-value=1.6 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.394 Sum_probs=32.0
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-------CCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCPLDNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-------~~~CP~Cr~~ 145 (153)
...|.+|........ .-.+.--.|.-.||..|+..=|.. .=.||.|+..
T Consensus 6 ~~~C~vC~~~~~~~~--~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 6 SGVCTICQEEYSEAP--NEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCBSSSCCCCCBTT--BCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCC--CCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 356888887643221 227777889999999998753321 2258888653
No 163
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=72.74 E-value=2.6 Score=27.14 Aligned_cols=47 Identities=15% Similarity=0.468 Sum_probs=32.8
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC----CCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 145 (153)
...|++|....... -.+.--.|.-.||..|+.-=+.. .=.||.|+..
T Consensus 18 ~~~C~~C~~~~~~~----~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 18 IWICPGCNKPDDGS----PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EECBTTTTBCCSSC----CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CcCCCCCCCCCCCC----CEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 34688998876332 26666779999999999754432 2359999765
No 164
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=71.92 E-value=0.73 Score=29.00 Aligned_cols=40 Identities=28% Similarity=0.639 Sum_probs=26.2
Q ss_pred ccccccccccCCCCccceEEeee--ec-ceechHHHHHHHcCCC----CCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGV--CN-HAFHFHCISRWLKTRQ----VCPLDNR 144 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~--C~-H~FH~~CI~~Wl~~~~----~CP~Cr~ 144 (153)
-| +|++... + -.+.--. |. ..||..|+. |...+ .||.|++
T Consensus 11 yC-~C~~~~~-g----~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 11 YC-LCHQVSY-G----EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ET-TTTEECC-S----EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCCCC-C----CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 35 7777642 1 1555566 76 799999998 54432 5888865
No 165
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.69 E-value=4.8 Score=29.77 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=24.5
Q ss_pred eEEeeeecceechHHHHHHHc---------C--CCCCCCCCCC
Q psy16471 114 TVAWGVCNHAFHFHCISRWLK---------T--RQVCPLDNRE 145 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~---------~--~~~CP~Cr~~ 145 (153)
.+.--.|--+||..||..=|. . .=.||+|+.+
T Consensus 75 LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 75 LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 666678999999999997663 1 2369999854
No 166
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.29 E-value=1.1 Score=30.85 Aligned_cols=41 Identities=29% Similarity=0.707 Sum_probs=27.1
Q ss_pred ccccccccccCCCCccceEEeee--ec-ceechHHHHHHHcCC----CCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGV--CN-HAFHFHCISRWLKTR----QVCPLDNRE 145 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~--C~-H~FH~~CI~~Wl~~~----~~CP~Cr~~ 145 (153)
.| +|+...... .|.--. |. ..||..|+. |... =.||.|+..
T Consensus 38 yC-iC~~~~~g~-----MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 38 YC-LCHQVSYGE-----MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CS-TTCCBCCSC-----CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred EE-ECCCCCCCC-----EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 45 787765321 444455 66 789999997 5442 259999875
No 167
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.87 E-value=2.8 Score=27.48 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=29.6
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHc-----CCCCCCCCCCCc
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-----TRQVCPLDNREW 146 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-----~~~~CP~Cr~~w 146 (153)
.| +|..++.. +.-.|.--.|.--||..|+.-=.. ..=.||.|+..-
T Consensus 14 ~C-~C~~~~d~---~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 14 YC-LCRQPYNV---NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CS-TTSCSCCS---SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred EE-EcCCccCC---CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 35 78877632 122566667999999999952111 133699998653
No 168
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=70.35 E-value=1.1 Score=31.69 Aligned_cols=28 Identities=21% Similarity=0.600 Sum_probs=24.4
Q ss_pred cccceeeeeccccc--ccCccccccccccC
Q psy16471 80 CNHAFHFHCISRNH--IMDLCIECQANQAS 107 (153)
Q Consensus 80 C~H~fh~~c~~~w~--~~~~CpiC~~~~~~ 107 (153)
|.|+|=+.|+..|. ....||.|++++..
T Consensus 20 CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 20 CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 99999999999985 56799999999833
No 169
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.01 E-value=0.39 Score=29.72 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=5.3
Q ss_pred Ccccccccc
Q psy16471 44 VDNCAICRN 52 (153)
Q Consensus 44 ~d~C~IC~~ 52 (153)
++.|.+|+.
T Consensus 9 ~~~C~vC~~ 17 (56)
T 2yql_A 9 EDFCSVCRK 17 (56)
T ss_dssp CCSCSSSCC
T ss_pred CCCCccCCC
Confidence 455666654
No 170
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=69.78 E-value=0.83 Score=28.78 Aligned_cols=40 Identities=28% Similarity=0.679 Sum_probs=25.6
Q ss_pred ccccccccccCCCCccceEEeee--ec-ceechHHHHHHHcCCC----CCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGV--CN-HAFHFHCISRWLKTRQ----VCPLDNR 144 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~--C~-H~FH~~CI~~Wl~~~~----~CP~Cr~ 144 (153)
-| +|+.... + -.+.--. |. ..||..|+. |...+ .||.|++
T Consensus 12 ~C-~C~~~~~-g----~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 12 YC-LCHQVSY-G----EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ET-TTTEECC-S----EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCcCC-C----CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 35 7877642 1 1555555 65 789999998 55432 5888764
No 171
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.22 E-value=2.8 Score=26.11 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=33.0
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHc-----CCCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-----TRQVCPLDNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-----~~~~CP~Cr~~ 145 (153)
...|++|..++..+ .-.|.--.|..-||..|+.--.. ..=.||.|+..
T Consensus 6 ~~~C~~C~~~~~~~---~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGESYAAD---EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCCCCCSS---SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCccCCC---CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45689999988432 22556668999999999864322 23469999764
No 172
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=66.95 E-value=2.2 Score=29.26 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=29.7
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcC---CCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNR 144 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~ 144 (153)
.| +|......+. .|.--.|.-.||..|+.-=+.. .=.||.|+.
T Consensus 30 rC-iC~~~~~~~~----mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGY----MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSC----EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCc----EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 46 6877664443 6777889999999998642222 126999974
No 173
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=65.58 E-value=2.6 Score=26.13 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=7.2
Q ss_pred cccCcccccccc
Q psy16471 41 DIVVDNCAICRN 52 (153)
Q Consensus 41 d~~~d~C~IC~~ 52 (153)
|..++.|.+|+.
T Consensus 2 d~~~~~C~vC~~ 13 (60)
T 2puy_A 2 MIHEDFCSVCRK 13 (60)
T ss_dssp CCCCSSCTTTCC
T ss_pred CCCCCCCcCCCC
Confidence 344566777754
No 174
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.26 E-value=1.1 Score=31.77 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=17.4
Q ss_pred eeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 118 GVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 118 ~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
..||+.| .+=+.....||.|+++|-
T Consensus 71 ~~CG~~F-----~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 71 RKCGFVF-----KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTTCCBC-----CCCSSCCSSCSSSCCCCB
T ss_pred hhCcCee-----cccCCCCCCCcCCCCCcc
Confidence 5699999 111233467999999975
No 175
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=65.20 E-value=2.8 Score=29.18 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=31.7
Q ss_pred CccccccccccCCCCccceEEee-eecceechHHHHHH------H--c--CCCCCCCCCCCcc
Q psy16471 96 DLCIECQANQASTTSEECTVAWG-VCNHAFHFHCISRW------L--K--TRQVCPLDNREWE 147 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~-~C~H~FH~~CI~~W------l--~--~~~~CP~Cr~~w~ 147 (153)
-.|++|++++... .-.+.-- .|.--||..|+.-= | + ..=.||.|++.-.
T Consensus 4 ~~C~iC~~p~~~~---~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDD---QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTT---SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCC---CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 3699999998443 1244443 79999999998411 1 0 1236999986643
No 176
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=64.43 E-value=3.6 Score=29.01 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred ccccceeeeeccccc-c--cCccccccccccCCCCccceEEeeeecceechHHHHHHHc
Q psy16471 79 VCNHAFHFHCISRNH-I--MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK 134 (153)
Q Consensus 79 ~C~H~fh~~c~~~w~-~--~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~ 134 (153)
.|...||+.|+.--. . .=.||-|+-..-.... ...-..|-..||.+|+.-=|.
T Consensus 34 ~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~---~~~C~~Cp~sfC~~c~~g~l~ 89 (107)
T 4gne_A 34 DCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAA---VSFCEFCPHSFCKDHEKGALV 89 (107)
T ss_dssp TCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBC---CEECSSSSCEECTTTCTTSCE
T ss_pred CCCcccccccCcCCcCCCCCEECCCCCCCcCCCCC---CcCcCCCCcchhhhccCCcce
Confidence 477899999985221 1 1136655433311111 245567889999999876554
No 177
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=64.23 E-value=1.3 Score=28.12 Aligned_cols=39 Identities=26% Similarity=0.528 Sum_probs=25.1
Q ss_pred cccccccCCCCccceEEeee--ec-ceechHHHHHHHcCC----CCCCCCCCC
Q psy16471 100 ECQANQASTTSEECTVAWGV--CN-HAFHFHCISRWLKTR----QVCPLDNRE 145 (153)
Q Consensus 100 iC~~~~~~~~~~~c~~~~~~--C~-H~FH~~CI~~Wl~~~----~~CP~Cr~~ 145 (153)
+|++... + -.+.--. |. ..||..|+. |... =.||.|++.
T Consensus 15 ~C~~~~~-g----~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 15 LCNQVSY-G----EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp TTTEECC-S----EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred ECCCCCC-C----CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 7777642 1 1555556 55 899999997 4432 258888653
No 178
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=63.57 E-value=2 Score=30.16 Aligned_cols=28 Identities=25% Similarity=0.603 Sum_probs=24.7
Q ss_pred eee-cceechHHHHHHHcCCCCCCCCCCC
Q psy16471 118 GVC-NHAFHFHCISRWLKTRQVCPLDNRE 145 (153)
Q Consensus 118 ~~C-~H~FH~~CI~~Wl~~~~~CP~Cr~~ 145 (153)
..| .|.+...||..-|+....||+|..+
T Consensus 42 V~C~dHYLCl~CLtlmL~~SdrCpIC~~p 70 (99)
T 2ko5_A 42 VECNNHYLCLNCLTLLLSVSNRCPICKMP 70 (99)
T ss_dssp EECSSCEEEHHHHHHTCSSSSEETTTTEE
T ss_pred eeecchhhHHHHHHHHHhhccCCcccCCc
Confidence 345 5999999999999999999999865
No 179
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.87 E-value=2.5 Score=28.92 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=21.4
Q ss_pred eEEeeeecceechHHHHHHHcCC----CCCCCCCCCcc
Q psy16471 114 TVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 147 (153)
Q Consensus 114 ~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~w~ 147 (153)
.+.--.|.-+||..|+..=|..- =.||.|+..-.
T Consensus 37 LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 37 LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 44555677778888876554432 25888875533
No 180
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.71 E-value=2.7 Score=29.07 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=25.3
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK 134 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~ 134 (153)
....|.+|...-+.. -.+.-..|+..||..||...+.
T Consensus 6 ~~~~C~~C~~~g~~~----~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLL----DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTT----TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCc----CCeECCCCCCCcChHHhCCccc
Confidence 345677787653211 1456678999999999987664
No 181
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=60.24 E-value=3.5 Score=28.33 Aligned_cols=33 Identities=24% Similarity=0.592 Sum_probs=20.5
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHH
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRW 132 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~W 132 (153)
.+.|++|..-. .+. ..---.|+-+||..|+.+=
T Consensus 15 D~~C~VC~~~t-~~~----l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEVWT-AES----LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCCCC-SSC----CSSCSSSSSCCCHHHHHHH
T ss_pred CcccCcccccc-ccc----eeccccccccccHhhcccc
Confidence 34577776322 221 2122359999999999995
No 182
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=55.76 E-value=12 Score=25.78 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=41.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~w~ 147 (153)
....|-||..++-....++-.+.--.|+-...+.|.+-=.+ -++.||-|...++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44689999999865555555666677888899999976544 4788999999876
No 183
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=54.62 E-value=1.2 Score=29.51 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=24.4
Q ss_pred cCcccc--ccccccCCCCccceEEee-----eecceechHHHHHHHc
Q psy16471 95 MDLCIE--CQANQASTTSEECTVAWG-----VCNHAFHFHCISRWLK 134 (153)
Q Consensus 95 ~~~Cpi--C~~~~~~~~~~~c~~~~~-----~C~H~FH~~CI~~Wl~ 134 (153)
...||. |...+...+ +.-.+.-. .|++.|.+.|...|=.
T Consensus 25 ~~~CP~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECC-CCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 445766 776664332 22223333 7999999999988844
No 184
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.00 E-value=9.5 Score=24.52 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=29.4
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHH------H---cCCCCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRW------L---KTRQVCPLDNRE 145 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~W------l---~~~~~CP~Cr~~ 145 (153)
.| +|+.++..+ -.|.--.|..-||..|+.-= | ...=.||.|+..
T Consensus 18 ~C-~C~~~~~~~----~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 18 YC-ICRQPHNNR----FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CS-TTCCCCCSS----CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred EE-ECCCccCCC----CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 45 788876532 26666789999999998421 1 134579999754
No 185
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=52.55 E-value=4.9 Score=25.38 Aligned_cols=9 Identities=56% Similarity=1.446 Sum_probs=5.1
Q ss_pred Ccccccccc
Q psy16471 44 VDNCAICRN 52 (153)
Q Consensus 44 ~d~C~IC~~ 52 (153)
++.|.||..
T Consensus 8 ~~~C~vC~~ 16 (66)
T 1xwh_A 8 EDECAVCRD 16 (66)
T ss_dssp CCSBSSSSC
T ss_pred CCCCccCCC
Confidence 455666653
No 186
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=51.26 E-value=3.3 Score=27.95 Aligned_cols=35 Identities=26% Similarity=0.696 Sum_probs=25.8
Q ss_pred CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccc
Q psy16471 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRN 92 (153)
Q Consensus 44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w 92 (153)
..+|.||+..-.+.||.|.. +.|.-+||+-|-.+-
T Consensus 17 ~l~C~iC~~~~~GAciqC~~--------------~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCHK--------------ANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCCSSCEEECSC--------------TTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCCCcEeEecCC--------------CCCCCcCcHHHHHHC
Confidence 35799998765567888854 368889999887543
No 187
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=50.52 E-value=7.2 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=25.1
Q ss_pred cCccccccccccCC---CCccceEEeeeecceechHHHHHH
Q psy16471 95 MDLCIECQANQAST---TSEECTVAWGVCNHAFHFHCISRW 132 (153)
Q Consensus 95 ~~~CpiC~~~~~~~---~~~~c~~~~~~C~H~FH~~CI~~W 132 (153)
++.|.+|+..-..+ ...+-.+.-..|+..||..||.-.
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CCcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 35688887654211 112236666789999999998754
No 188
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.44 E-value=8 Score=25.90 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=31.9
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--------CCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDNRE 145 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--------~~~CP~Cr~~ 145 (153)
...|.+|...-... +.-.+.--.|...||..|+..=|.. .=.||.|+..
T Consensus 16 ~~~C~vC~~~~~~~--~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVAS--GNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCT--TCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCC--CCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 34688888654221 1226777789999999999854431 2258888643
No 189
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=48.40 E-value=6.8 Score=27.50 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=16.0
Q ss_pred ccccccCccccccccccCCCCccceEEeeeec
Q psy16471 90 SRNHIMDLCIECQANQASTTSEECTVAWGVCN 121 (153)
Q Consensus 90 ~~w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~ 121 (153)
......+.||.|.++. -++-.||
T Consensus 56 ~~f~~~a~CPdC~q~L---------evLkACG 78 (101)
T 2jne_A 56 EFIEMKALCPDCHQPL---------QVLKACG 78 (101)
T ss_dssp CEEEEEEECTTTCSBC---------EEEEETT
T ss_pred chhhccccCcchhhHH---------HHHHHhc
Confidence 4445678899999885 3455676
No 190
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=48.14 E-value=18 Score=30.63 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=32.4
Q ss_pred cCccccccccccCCCCccceEEeeeecce--echHHHHHHHcCC--CCCCCCCCCccccc
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHA--FHFHCISRWLKTR--QVCPLDNREWEFQK 150 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~--FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~ 150 (153)
.-.||+-...+.. +..-..|.|. |-..=+.+..+.. -.||+|.+.-.+..
T Consensus 215 SL~CPlS~~ri~~------P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLTI------PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCSS------EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceecc------CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 3458877666522 5566779998 6655444444433 36999999876654
No 191
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=47.91 E-value=18 Score=30.80 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=29.6
Q ss_pred CccccccccccCCCCccceEEeeeecce--echHHHHHHHcCC--CCCCCCCCCccccc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHA--FHFHCISRWLKTR--QVCPLDNREWEFQK 150 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~--FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~ 150 (153)
-.||+-...+.. ++.-..|.|. |-..=+.+-.+.. -.||+|.+.-.+..
T Consensus 250 L~CPlS~~ri~~------PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKY------PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSS------EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCccccccc------cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 346666555422 5566679998 5554344433333 36999998876654
No 192
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=47.04 E-value=8.4 Score=24.64 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=28.5
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHHHHHHc---CCCCCCCCCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNR 144 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~---~~~~CP~Cr~ 144 (153)
...| +|+.+...+ -.|.-..|.--||..|+.-=.. ..=.||.|+.
T Consensus 19 ~~~C-iC~~~~~~~----~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGR----PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTC----CEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCC----CEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3456 888776432 2666667999999999963221 1235777754
No 193
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=46.48 E-value=7.4 Score=28.73 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=17.5
Q ss_pred ccCccccccccccCCCCccceEEeeeecc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNH 122 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H 122 (153)
.-+.||.|..+|....++ ..+-+.|+|
T Consensus 26 ~lP~CP~C~seytYeDg~--l~vCPeC~h 52 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGA--LLVCPECAH 52 (138)
T ss_dssp CSCCCTTTCCCCCEECSS--SEEETTTTE
T ss_pred cCCCCCCCCCcceEecCC--eEECCcccc
Confidence 468899999999665433 344444444
No 194
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=44.79 E-value=12 Score=25.00 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=31.7
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCCCCc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 146 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w 146 (153)
....|.+|...-... ++-.+.--.|.-.||..|+.-=+.- .=.||.|+..-
T Consensus 24 ~~~~C~vC~~~~s~~--~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQN--SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCS--EEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCC--CCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 345788888653111 2236666789999999999742211 12488886543
No 195
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.04 E-value=5.4 Score=27.04 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=31.6
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCCCCCC
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNR 144 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~ 144 (153)
....|.+|...-.. +-.+.--.|...||..|+..=|..- =.||.|+.
T Consensus 15 ~~~~C~vC~~~~~~----~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDED----DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGG----GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCC----CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34578999876422 2366667899999999997433332 14999864
No 196
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=41.52 E-value=5 Score=30.53 Aligned_cols=45 Identities=24% Similarity=0.455 Sum_probs=30.2
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCCCCCCCcc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 147 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~w~ 147 (153)
..|.+|... + + .+.-..|.-+||..|+..=+... =.||.|+..-.
T Consensus 3 ~~C~~C~~~---g--~--ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 3 TICRVCQKP---G--D--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCBTTTCCC---S--S--CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CcCccCCCC---C--c--eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 457777743 1 1 45556789999999997544432 25999987643
No 197
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.98 E-value=20 Score=23.18 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=28.6
Q ss_pred CccccccccccCCCCccceEEee--eecceechHHHHHHHc---------CCCCCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWG--VCNHAFHFHCISRWLK---------TRQVCPLDNRE 145 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~--~C~H~FH~~CI~~Wl~---------~~~~CP~Cr~~ 145 (153)
..| +|......+. .|.-- .|..-||..|+.-=-+ ..-.||.|+..
T Consensus 17 ~~C-iC~~~~~~g~----MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 17 VRC-VCGNSLETDS----MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCC-SSCCCCCCSC----EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred EEe-ECCCcCCCCC----EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 456 6777643332 55555 7999999999952111 23369999764
No 198
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=40.51 E-value=26 Score=21.11 Aligned_cols=41 Identities=17% Similarity=0.426 Sum_probs=25.3
Q ss_pred ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
..+.|+.|...+.... .+ ...=+..||..|+ .|-.|.+...
T Consensus 10 ~~~~C~~C~~~i~~~e----~~-~~~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 10 ASATCERCKGGFAPAE----KI-VNSNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TTCBCTTTCCBCCTTC----EE-EEETTEEEETTTS--------SCTTTCCCCG
T ss_pred CCccchhcCccccCCc----eE-EEeCcCeeCcCCC--------cccCCCCCCC
Confidence 4567888888875431 22 2234677888887 4666766543
No 199
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=39.50 E-value=12 Score=22.47 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=27.2
Q ss_pred ccccccccccCCCCccceEEee-eecceechHHHHHHH----cCCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWG-VCNHAFHFHCISRWL----KTRQVCPLDN 143 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~-~C~H~FH~~CI~~Wl----~~~~~CP~Cr 143 (153)
.|.+|+.++..+ .-.|.-- .|.--||..|+.-=. ...-.||.|+
T Consensus 4 ~cc~C~~p~~~~---~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK---VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT---CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC---CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467788887432 2244444 688999999975211 2345688875
No 200
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=39.42 E-value=11 Score=29.93 Aligned_cols=27 Identities=30% Similarity=0.668 Sum_probs=15.8
Q ss_pred cccccceeeeeccccc---cc---Ccccccccc
Q psy16471 78 GVCNHAFHFHCISRNH---IM---DLCIECQAN 104 (153)
Q Consensus 78 g~C~H~fh~~c~~~w~---~~---~~CpiC~~~ 104 (153)
..|...||+.|+..-+ .. =.||.|+..
T Consensus 193 D~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 193 DECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 4589999999997443 22 248877643
No 201
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=38.33 E-value=3.5 Score=27.42 Aligned_cols=34 Identities=18% Similarity=0.582 Sum_probs=20.3
Q ss_pred cccccccccCCCCccceEEeeeecceechHHHHHH
Q psy16471 98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRW 132 (153)
Q Consensus 98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~W 132 (153)
||-|...+...++ .-.+.-..|++.|.+.|-..|
T Consensus 28 CP~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYERE-QLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCS-CSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCC-CCceEeCCCCCccccccCCch
Confidence 6666655533221 223445579999977777776
No 202
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.04 E-value=9.9 Score=25.62 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=14.9
Q ss_pred ccccCccccccccccCCCCccceEEeeeecce
Q psy16471 92 NHIMDLCIECQANQASTTSEECTVAWGVCNHA 123 (153)
Q Consensus 92 w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~ 123 (153)
....+.||.|.++++ +...||-+
T Consensus 28 ~~~~afCPeCgq~Le---------~lkACGA~ 50 (81)
T 2jrp_A 28 FSLQALCPDCRQPLQ---------VLKACGAV 50 (81)
T ss_dssp EEEEEECSSSCSCCC---------EEEETTEE
T ss_pred CCCcccCcchhhHHH---------HHHhcCCc
Confidence 345568898888862 35567754
No 203
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=36.70 E-value=28 Score=33.21 Aligned_cols=45 Identities=9% Similarity=-0.087 Sum_probs=35.6
Q ss_pred CccccccccccCCCCccceEEeeeec-ceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCN-HAFHFHCISRWLKTRQVCPLDNREWE 147 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~-H~FH~~CI~~Wl~~~~~CP~Cr~~w~ 147 (153)
-.|||-..-+.+ + |.++-| +.|-+..|.+||..+++||+=|.+-.
T Consensus 892 F~cPIs~~lM~D------P-VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 892 FLDPLMYTIMKD------P-VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp GBCTTTCSBCSS------E-EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred hCCcchhhHHhC------C-eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 458888877743 3 556676 69999999999999999999887644
No 204
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=36.58 E-value=13 Score=26.23 Aligned_cols=13 Identities=31% Similarity=0.968 Sum_probs=11.2
Q ss_pred eechHHHHHHHcC
Q psy16471 123 AFHFHCISRWLKT 135 (153)
Q Consensus 123 ~FH~~CI~~Wl~~ 135 (153)
.|++.||++|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999964
No 205
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=36.54 E-value=13 Score=26.18 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=11.2
Q ss_pred eechHHHHHHHcC
Q psy16471 123 AFHFHCISRWLKT 135 (153)
Q Consensus 123 ~FH~~CI~~Wl~~ 135 (153)
.|++.||++|++.
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999963
No 206
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.65 E-value=12 Score=23.45 Aligned_cols=40 Identities=18% Similarity=0.522 Sum_probs=25.8
Q ss_pred cCccccccccccCCCCccceEEee-e--ecceechHHHHHHHcCC
Q psy16471 95 MDLCIECQANQASTTSEECTVAWG-V--CNHAFHFHCISRWLKTR 136 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~-~--C~H~FH~~CI~~Wl~~~ 136 (153)
...||-|...++-..| |.-++- . |++.|...|+.+|-...
T Consensus 6 ~k~CP~C~~~Iek~~G--CnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGG--CNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCS--CCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCC--CCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4578999988865432 322222 2 88888888887776543
No 207
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=31.58 E-value=13 Score=19.95 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=17.2
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHH
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCI 129 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI 129 (153)
+.|+.|...+.... .+ ..=|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~E----k~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTE----KV--NCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGG----CC--CSSSSCCCGGGC
T ss_pred CcCCccCCEEecce----eE--EECCeEecccCC
Confidence 46888887774331 11 123688998884
No 208
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.16 E-value=16 Score=22.85 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=6.6
Q ss_pred CccccccccccC
Q psy16471 96 DLCIECQANQAS 107 (153)
Q Consensus 96 ~~CpiC~~~~~~ 107 (153)
-.|..|..++..
T Consensus 28 F~C~~C~~~L~~ 39 (76)
T 1iml_A 28 LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCccccCccCCC
Confidence 356666665533
No 209
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=27.39 E-value=28 Score=21.87 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=27.8
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 142 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~C 142 (153)
.|-.|+..+...+ .-.-..|++.|..+|=.==-++-.+||-|
T Consensus 17 ~C~~C~~~~~~~~----~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQH----VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSE----EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCc----cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4777777774331 23457899999999954333445678877
No 210
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=25.30 E-value=34 Score=24.93 Aligned_cols=45 Identities=18% Similarity=0.454 Sum_probs=28.6
Q ss_pred CccccccccccCCCCccceEEeeeecceechHHHHHHH-----cCCCCCCCCCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWL-----KTRQVCPLDNR 144 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl-----~~~~~CP~Cr~ 144 (153)
..| +|..+...+ .-.+.--.|.-.||..|+.-=. ...=.||.|+.
T Consensus 9 ~~C-~C~~~~~~~---~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 9 LYC-ICKTPEDES---KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp EET-TTTEECCTT---SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred cEe-eCCCCCCCC---CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 357 788775321 1255556799999999995211 12346999975
No 211
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.10 E-value=15 Score=20.70 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=7.7
Q ss_pred CCCCCCCCcc
Q psy16471 138 VCPLDNREWE 147 (153)
Q Consensus 138 ~CP~Cr~~w~ 147 (153)
+||+|++...
T Consensus 7 iCP~C~~~l~ 16 (34)
T 3mjh_B 7 ICPQCMKSLG 16 (34)
T ss_dssp ECTTTCCEES
T ss_pred CCcHHHHHcC
Confidence 5999998643
No 212
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=24.81 E-value=26 Score=20.81 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=24.6
Q ss_pred cccccccCCCCccceEEeeeecceechHHHHHHHc---CCCCCCCCCC
Q psy16471 100 ECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNR 144 (153)
Q Consensus 100 iC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~---~~~~CP~Cr~ 144 (153)
+|+.+...+ -.|.--.|.--||..|+.-=.. ..=.||.|+.
T Consensus 8 ~C~~~~~~~----~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGR----PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTC----CEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCC----CEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 455554322 2666667999999999863221 1235777753
No 213
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.59 E-value=22 Score=24.16 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=26.6
Q ss_pred CccccccccccCCCCccceEEeeeec---ceechHHHHHHHcCC----CCCCC-CCC
Q psy16471 96 DLCIECQANQASTTSEECTVAWGVCN---HAFHFHCISRWLKTR----QVCPL-DNR 144 (153)
Q Consensus 96 ~~CpiC~~~~~~~~~~~c~~~~~~C~---H~FH~~CI~~Wl~~~----~~CP~-Cr~ 144 (153)
..| +|+..... ..|.--.|. -.||..||. |... =.||. |++
T Consensus 27 ~yC-iC~~~~~g-----~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 27 VYC-FCRNVSYG-----PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCS-TTTCCCSS-----SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred cEE-EeCCCCCC-----CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 346 78875432 166666655 799999996 4332 25998 874
No 214
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.37 E-value=32 Score=21.72 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=28.2
Q ss_pred ccccccccccCCCCccceEEeeeecceechHHHHHHH----cCCCCCCCCCCC
Q psy16471 97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWL----KTRQVCPLDNRE 145 (153)
Q Consensus 97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl----~~~~~CP~Cr~~ 145 (153)
.| +|..+...+ +-.|.--.|.--||..|+.-=. ...-.||.|+..
T Consensus 18 ~C-~C~~~~~~g---~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 18 DC-KCGTKDDDG---ERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CC-TTCCCSCCS---SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred Ee-eCCCccCCC---CcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 46 577765322 2256666799999999986422 122368888754
No 215
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.92 E-value=60 Score=22.06 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.5
Q ss_pred cceechHHHHHHHcC
Q psy16471 121 NHAFHFHCISRWLKT 135 (153)
Q Consensus 121 ~H~FH~~CI~~Wl~~ 135 (153)
+|-|.+.|-.+-++.
T Consensus 38 ~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 38 SHKFCFPCSRESIKA 52 (93)
T ss_dssp SCEECHHHHHHHHHH
T ss_pred CCeeeccccHHHHHh
Confidence 588999998888875
No 216
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.78 E-value=33 Score=20.84 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=6.3
Q ss_pred Ccccccccccc
Q psy16471 96 DLCIECQANQA 106 (153)
Q Consensus 96 ~~CpiC~~~~~ 106 (153)
+.|+.|...+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x4k_A 6 SGCQECKKTIM 16 (72)
T ss_dssp CCBSSSCCCCC
T ss_pred CCCccCCCccc
Confidence 45666666554
No 217
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.21 E-value=29 Score=21.10 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=5.5
Q ss_pred Ccccccccccc
Q psy16471 96 DLCIECQANQA 106 (153)
Q Consensus 96 ~~CpiC~~~~~ 106 (153)
+.|+.|...+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1wyh_A 6 SGCSACGETVM 16 (72)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCccCCCccc
Confidence 34555555553
No 218
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.01 E-value=38 Score=21.00 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=16.8
Q ss_pred cCccccccccccCCCCccceEEeeeecceechHHH
Q psy16471 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCI 129 (153)
Q Consensus 95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI 129 (153)
.+.|+.|..++... ++... +..=+..||..|+
T Consensus 5 ~~~C~~C~~~I~~~-g~~~~--~~a~~~~wH~~CF 36 (76)
T 1x68_A 5 SSGCVACSKPISGL-TGAKF--ICFQDSQWHSECF 36 (76)
T ss_dssp CCCCTTTCCCCCTT-TTCCE--EEETTEEEEGGGC
T ss_pred CCCCccCCCcccCC-CCcee--EEECCcccCcccC
Confidence 35677777776530 00012 2234667777775
Done!