RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16471
(153 letters)
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 104 bits (259), Expect = 5e-30
Identities = 93/152 (61%), Positives = 99/152 (65%), Gaps = 46/152 (30%)
Query: 2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
+M+VDT P+ + + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 1 GSMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 54
Query: 62 QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
QANQAS TSEECTVAWGVCNHAFH
Sbjct: 55 QANQASATSEECTVAWGVCNHAFH------------------------------------ 78
Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
FHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 79 ----FHCISRWLKTRQVCPLDNREWEFQKYGH 106
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 103 bits (257), Expect = 1e-29
Identities = 88/150 (58%), Positives = 94/150 (62%), Gaps = 40/150 (26%)
Query: 4 MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
++ + + + KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA
Sbjct: 8 VDEENLYFQGGGRGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 67
Query: 64 NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
NQAS TSEECTVAWGVCNHAFH
Sbjct: 68 NQASATSEECTVAWGVCNHAFH-------------------------------------- 89
Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
FHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 90 --FHCISRWLKTRQVCPLDNREWEFQKYGH 117
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 94.6 bits (235), Expect = 1e-26
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 43/121 (35%)
Query: 32 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91
+ +W+WD+ D CAICR +MD C+ CQA
Sbjct: 3 SGSSGMWSWDVECDTCAICRVQVMDACLRCQAEN-------------------------- 36
Query: 92 NHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 151
E+C V WG CNH+FH C+S W+K CPL ++W Q+
Sbjct: 37 -----------------KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79
Query: 152 G 152
G
Sbjct: 80 G 80
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 40.1 bits (94), Expect = 1e-05
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C HAFH C+ +WL+ R+VCPL
Sbjct: 36 CKHAFHRKCLIKWLEVRKVCPL 57
Score = 24.3 bits (53), Expect = 7.4
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 80 CNHAFHFHCI 89
C HAFH C+
Sbjct: 36 CKHAFHRKCL 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 39.7 bits (93), Expect = 1e-05
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C HAF + CI+RW++ CPL
Sbjct: 24 CLHAFCYVCITRWIRQNPTCPL 45
Score = 27.4 bits (61), Expect = 0.65
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 17/47 (36%)
Query: 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91
+ C IC + + C HAF + CI+R
Sbjct: 6 ERCPICLEDPSNYSMALP-----------------CLHAFCYVCITR 35
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 38.8 bits (91), Expect = 4e-05
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNH FH C+ +WLK + CP+
Sbjct: 44 CNHEFHAKCVDKWLKANRTCPI 65
Score = 25.4 bits (56), Expect = 3.0
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 80 CNHAFHFHCI 89
CNH FH C+
Sbjct: 44 CNHEFHAKCV 53
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 38.9 bits (91), Expect = 6e-05
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C+H FH C+S WL+ CP+
Sbjct: 61 CHHYFHKPCVSIWLQKSGTCPV 82
Score = 25.0 bits (55), Expect = 5.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 80 CNHAFHFHCI 89
C+H FH C+
Sbjct: 61 CHHYFHKPCV 70
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 37.6 bits (87), Expect = 1e-04
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C H F C+ LK CP ++
Sbjct: 40 CGHVFCSQCLRDSLKNANTCPTCRKK 65
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 38.7 bits (89), Expect = 1e-04
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 6/75 (8%)
Query: 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQAN 104
++C IC + + C+HAFH C+
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLA------MYCNGNK 79
Query: 105 QASTTSEECTVAWGV 119
S C +G
Sbjct: 80 DGSLQCPSCKTIYGE 94
Score = 34.4 bits (78), Expect = 0.004
Identities = 9/64 (14%), Positives = 14/64 (21%), Gaps = 5/64 (7%)
Query: 88 CISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-----VCPLD 142
I + + C+HAFH C+ CP
Sbjct: 29 IICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSC 88
Query: 143 NREW 146
+
Sbjct: 89 KTIY 92
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 37.3 bits (87), Expect = 1e-04
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C H FH C+ +WL T + CP+
Sbjct: 35 CMHLFHQVCVDQWLITNKKCPI 56
Score = 23.9 bits (52), Expect = 9.1
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 80 CNHAFHFHCI 89
C H FH C+
Sbjct: 35 CMHLFHQVCV 44
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 37.2 bits (87), Expect = 1e-04
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C H FH C+ WL + CPL
Sbjct: 27 CGHGFHAECVDMWLGSHSTCPL 48
Score = 24.5 bits (54), Expect = 5.5
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 80 CNHAFHFHCI 89
C H FH C+
Sbjct: 27 CGHGFHAECV 36
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 37.1 bits (86), Expect = 2e-04
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C H F C+ LK CP ++
Sbjct: 35 CGHVFCSQCLRDSLKNANTCPTCRKK 60
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 37.1 bits (86), Expect = 2e-04
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C H F C+ LK CP ++
Sbjct: 28 CGHVFCSQCLRDSLKNANTCPTCRKK 53
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 36.5 bits (85), Expect = 2e-04
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C H H C LK CPL
Sbjct: 27 CGHLLHRTCYEEMLKEGYRCPL 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 36.6 bits (85), Expect = 2e-04
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C H+F CI +W + CP+
Sbjct: 32 CAHSFCQKCIDKWSDRHRNCPI 53
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 37.0 bits (86), Expect = 2e-04
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
CNH FH CI WL+ CP+
Sbjct: 36 CNHLFHDSCIVPWLEQHDSCPV 57
Score = 24.7 bits (54), Expect = 5.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 80 CNHAFHFHCI 89
CNH FH CI
Sbjct: 36 CNHLFHDSCI 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 36.1 bits (83), Expect = 4e-04
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 120 CNHAFHFHCISRWLKTRQ--VCPLDNREWEFQ 149
C H C++++ ++ CP N W +
Sbjct: 34 CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65
Score = 24.5 bits (53), Expect = 6.0
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 17/48 (35%)
Query: 44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91
V C IC + ++ C+ C H C+++
Sbjct: 15 VKICNICHS-LLIQGQSCE----------------TCGIRMHLPCVAK 45
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 37.0 bits (85), Expect = 0.001
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 82 HAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ--VC 139
+ + + +C C + + C C H C++++ ++ C
Sbjct: 167 EMEQYIRETYPDAVKICNIC--HSLLIQGQSCET----CGIRMHLPCVAKYFQSNAEPRC 220
Query: 140 PLDNREWE 147
P N W
Sbjct: 221 PHCNDYWP 228
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 35.9 bits (82), Expect = 0.001
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 2/88 (2%)
Query: 58 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAW 117
C +C + + C NH + + + I + V+
Sbjct: 37 CSQC-LRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVST 95
Query: 118 GVCNHAFHFHCISRWLKTRQVCPLDNRE 145
C H F C+ LK CP ++
Sbjct: 96 E-CGHVFCSQCLRDSLKNANTCPTCRKK 122
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 32.9 bits (75), Expect = 0.007
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C H F + C+ + C L +E
Sbjct: 33 CKHVFCYLCVKGASWLGKRCALCRQE 58
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 32.8 bits (75), Expect = 0.007
Identities = 9/26 (34%), Positives = 9/26 (34%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C H F CI R CP N
Sbjct: 34 CLHTFCKSCIVRHFYYSNRCPKCNIV 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 33.2 bits (75), Expect = 0.021
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 120 CNHAFHFHCISRWLKTR-QVCPLDNRE 145
C H C++ W ++ Q CP E
Sbjct: 350 CGHLMCTSCLTSWQESEGQGCPFCRCE 376
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 31.3 bits (71), Expect = 0.026
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C H F C + C + ++
Sbjct: 33 CRHYFCESCALEHFRATPRCYICDQP 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 31.4 bits (70), Expect = 0.093
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 120 CNHAFHFHCISRWLKTRQ 137
C H C+ W KT
Sbjct: 334 CVLKCHAVCLEEWFKTLM 351
Score = 26.4 bits (57), Expect = 5.2
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 10/45 (22%)
Query: 47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91
C IC + +D C A C H C+
Sbjct: 311 CNICFAYRLD--------GGEVPLVSCDNA--KCVLKCHAVCLEE 345
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 30.2 bits (68), Expect = 0.099
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C H+F CI R+L+T + CP+ + +
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPICDVQ 59
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 29.9 bits (67), Expect = 0.13
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 120 CNHAFHFHCISRWL-KTRQVCPL 141
C+ F CI RWL + R CP
Sbjct: 41 CSKLCCFSCIRRWLTEQRAQCPH 63
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 30.0 bits (67), Expect = 0.19
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C H+F +CI+ W+K + CP+
Sbjct: 82 CAHSFCSYCINEWMKRKIECPI 103
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 29.0 bits (65), Expect = 0.27
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C+H + CI ++L + CP
Sbjct: 41 CSHNYCSLCIRKFLSYKTQCPTCCVT 66
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 28.2 bits (62), Expect = 1.2
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH 93
C IC M C EC + ++ + CN H H NH
Sbjct: 206 CRICGGLAMYECREC-YDDPDISAGKIKQFCKTCNTQVHLHPKRLNH 251
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 25.8 bits (56), Expect = 4.3
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 140
D C+ + E V+ C + H C+ L +
Sbjct: 5 DFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVK 49
Score = 24.6 bits (53), Expect = 9.3
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 56 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQ---------- 105
D C+ + E V+ C + H C+ M ++ Q
Sbjct: 5 DFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILC 64
Query: 106 ASTTSEECTVAWGVCNHAFHFHC 128
++ +++ + C+ +H +C
Sbjct: 65 GTSENDDQLLFCDDCDRGYHMYC 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 25.8 bits (56), Expect = 4.5
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 56 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDL-----------CIECQAN 104
C+ + EE ++ C ++ H C+ + + + C C +
Sbjct: 9 SFCLGTKEQNREKKPEEL-ISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSC 67
Query: 105 QASTTSEECTVAWGVCNHAFHFHCIS 130
+ + + + C+ FH C
Sbjct: 68 RDQGKNADNMLFCDSCDRGFHMECCD 93
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 25.3 bits (55), Expect = 6.6
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 115 VAWGVCNHAFHFHCISRWLKTRQVCPL 141
V G C H F +C+S + T CP+
Sbjct: 36 VCLGGCEHIFCSNCVSDCIGTG--CPV 60
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 24.4 bits (53), Expect = 7.2
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 120 CNHAFHFHCISRWLK-TRQVCPLDNRE 145
C H F C++ L + C
Sbjct: 33 CGHRFCESCMAALLSSSSPKCTACQES 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.130 0.460
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,338,497
Number of extensions: 119911
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 126
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)