RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16471
(153 letters)
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 83.6 bits (206), Expect = 1e-22
Identities = 86/128 (67%), Positives = 87/128 (67%), Gaps = 40/128 (31%)
Query: 24 KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 83
KKRF+VKKWNAVALWAWDIVVDNCAIC
Sbjct: 1 KKRFEVKKWNAVALWAWDIVVDNCAIC--------------------------------- 27
Query: 84 FHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143
RNHIMDLCIECQANQAS TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN
Sbjct: 28 -------RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80
Query: 144 REWEFQKY 151
REWEFQKY
Sbjct: 81 REWEFQKY 88
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 36.9 bits (84), Expect = 2e-04
Identities = 7/51 (13%), Positives = 11/51 (21%)
Query: 87 HCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ 137
I + + C+HAFH C+
Sbjct: 28 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN 78
Score = 35.8 bits (81), Expect = 4e-04
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91
++C IC + + C+HAFH C+
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLA 72
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 35.2 bits (81), Expect = 2e-04
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 141
MD +EC A E C H FH C+ WL + CPL
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 48
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 34.2 bits (78), Expect = 8e-04
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 107 STTSEECTVAWGV---------CNHAFHFHCISRWLKTRQVCPLDNREWE 147
+T +E C + C HAF + CI+RW++ CPL E
Sbjct: 2 ATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 28.8 bits (64), Expect = 0.084
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 120 CNHAFHFHCISRWLKTR-QVCPL 141
C H C++ W ++ Q CP
Sbjct: 41 CGHLMCTSCLTSWQESEGQGCPF 63
>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 25.4 bits (56), Expect = 1.5
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 13/49 (26%)
Query: 18 STTKG---EKKRFDVKKWNAVALWAWDIVV----------DNCAICRNH 53
ST G E KR VK++ ++ A I+V N R+H
Sbjct: 8 STRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDH 56
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 24.4 bits (52), Expect = 2.3
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 120 CNHAFHFHCISRWLKTRQ--VCPLDNREWEFQ 149
H C+S WL + C + + +
Sbjct: 29 ELENVHRSCLSTWLTISRNTACQICGVVYNTR 60
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 24.3 bits (52), Expect = 2.4
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
C + C R R+
Sbjct: 22 CGYQICRFCWHRIRTDENGLCPACRK 47
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 24.1 bits (52), Expect = 2.8
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 3/22 (13%)
Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
C H C+ CP+
Sbjct: 24 CLHTLCSGCLEASGMQ---CPI 42
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 24.5 bits (53), Expect = 3.3
Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 120 CNHAFHFHCISRWLKTRQ-VCPL 141
C H F CI R LK CP
Sbjct: 41 CKHLFCRICILRCLKVMGSYCPS 63
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.0 bits (51), Expect = 4.0
Identities = 5/33 (15%), Positives = 7/33 (21%), Gaps = 1/33 (3%)
Query: 120 CNHAFHFHCISRWLKTRQ-VCPLDNREWEFQKY 151
C H C+ CP +
Sbjct: 26 CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 131
Score = 24.7 bits (53), Expect = 4.4
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 82 HAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN---HAFH 125
H C+ + + Q + T+ + V W CN HA H
Sbjct: 73 DVTHGFCMVNHGVSMEISPQQTASVTFTAGKPGVYWYYCNWFCHALH 119
Score = 23.9 bits (51), Expect = 6.4
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCN---HAFH 85
V + + + Q + T+ + V W CN HA H
Sbjct: 74 VTHGFCMVNHGVSMEISPQQTASVTFTAGKPGVYWYYCNWFCHALH 119
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator
Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 65
Score = 23.7 bits (51), Expect = 4.7
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 89 ISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 131
+ R I + +E + V + + H R
Sbjct: 1 LDRERIAEAALELVDRDGDFRMPDLARHLNVQVSSIYHHAKGR 43
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella
nidulans (Aspergillus nidulans) [TaxId: 162425]}
Length = 301
Score = 23.9 bits (51), Expect = 9.2
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 1/76 (1%)
Query: 74 TVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWL 133
T+ W ++ N + + + W V N F+ R
Sbjct: 81 TLVWHSQLPSWVSSIGDANTLRSVMTNHINEVVGRYKGKIM-HWDVVNEIFNEDGTFRNS 139
Query: 134 KTRQVCPLDNREWEFQ 149
+ D F+
Sbjct: 140 VFYNLLGEDFVRIAFE 155
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 23.2 bits (49), Expect = 9.4
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 120 CNHAFHFHCISRWLKTRQVC 139
C H F +C+S + T
Sbjct: 41 CEHIFCSNCVSDCIGTGCPV 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.130 0.460
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,372
Number of extensions: 26607
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 76
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.2 bits)