BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16472
(630 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|70909601|emb|CAJ17226.1| ribosomal protein L3e [Scarabaeus laticollis]
Length = 410
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/265 (73%), Positives = 219/265 (82%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FP+DDP+KPVHLTAFIGYKAGMTH++READ
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPEDDPSKPVHLTAFIGYKAGMTHVLREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTILETPPMVIVGV+GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTILETPPMVIVGVVGYIETPHGLRALATVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD+LGKK+I +DL+K+ KYCKV+RVIAHT
Sbjct: 122 WYKSKKKAFTKASKKWQDELGKKSIERDLKKIVKYCKVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQLNGGTIDDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PVNNVFAQDEMIDCIGVTKGKGYKG 230
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/131 (88%), Positives = 126/131 (96%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQLNGGTIDDKVKWAREHLEKPIPVNNVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 117/162 (72%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGAGIHTKDGKVIKNNASTQYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+ L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRVALEKINLKFIDTSSKFGHGR 378
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCI
Sbjct: 161 RVIAHTQMKLLKQRQKKAHIMEIQLNGGTIDDKVKWAREHLEKPIPVNNVFAQDEMIDCI 220
Query: 605 GVTKGKGFK 613
GVTKGKG+K
Sbjct: 221 GVTKGKGYK 229
>gi|189240524|ref|XP_971875.2| PREDICTED: similar to ribosomal protein L3e [Tribolium castaneum]
gi|270011378|gb|EFA07826.1| hypothetical protein TcasGA2_TC005395 [Tribolium castaneum]
Length = 409
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/265 (73%), Positives = 216/265 (81%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTILETPPM+IVGV+GY+ETPHGLR+ T+WAEHLS++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTILETPPMMIVGVVGYIETPHGLRALATIWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I +D +K+ KYCKV+RVIAHT
Sbjct: 122 WYKSKKKAFTKASKKWNDDLGKKSIERDFKKIIKYCKVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL +RQKKAH+MEIQLNGGSV DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLNQRQKKAHIMEIQLNGGSVVDKVQWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PVAQVFAQDEMIDCIGVTKGKGYKG 230
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 118/131 (90%), Positives = 126/131 (96%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL +RQKKAH+MEIQLNGGSV DK+ WAR+HLE+PIPV QVFAQDEMIDCIGVTKGKG
Sbjct: 168 MKLLNQRQKKAHIMEIQLNGGSVVDKVQWAREHLEKPIPVAQVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 118/162 (72%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGAGIHTKDGKVIKNNASTEYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+ L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRVALEKINLKFIDTSSKFGHGR 378
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLL +RQKKAH+MEIQLNGGSV DK+ WAR+HLE+PIPV QVFAQDEMIDCI
Sbjct: 161 RVIAHTQMKLLNQRQKKAHIMEIQLNGGSVVDKVQWAREHLEKPIPVAQVFAQDEMIDCI 220
Query: 605 GVTKGKGFK 613
GVTKGKG+K
Sbjct: 221 GVTKGKGYK 229
>gi|62083393|gb|AAX62421.1| ribosomal protein L3 [Lysiphlebus testaceipes]
gi|62083395|gb|AAX62422.1| ribosomal protein L3 variant 1 [Lysiphlebus testaceipes]
Length = 412
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/265 (72%), Positives = 216/265 (81%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILETPPM+IVG +GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEAVTILETPPMMIVGCVGYIETPHGLRALTTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LG+K+I +DL+K+ KYCKV+RVIAHT
Sbjct: 122 WYKSKKKAFTKASKKWQDDLGRKSIEKDLKKIKKYCKVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKA++MEIQLNGGS+ADK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLRQRQKKANIMEIQLNGGSIADKVEWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMID IGVTKGKG KG
Sbjct: 206 PVSNVFAQDEMIDVIGVTKGKGTKG 230
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 113/131 (86%), Positives = 124/131 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKA++MEIQLNGGS+ADK+ WAR+HLE+PIPV VFAQDEMID IGVTKGKG
Sbjct: 168 MKLLRQRQKKANIMEIQLNGGSIADKVEWAREHLEKPIPVSNVFAQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 TKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDG+V
Sbjct: 288 GQGIHTKDGRV 298
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGTKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y V+KNNAST+YDLTEKSITPMGGFPHYGEVNNDF+M+KGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGRVVKNNASTEYDLTEKSITPMGGFPHYGEVNNDFVMLKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRASLEKINLKFIDTSSKFGHGR 378
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C RVI +MKLL++RQKKA++MEIQLNGGS+ADK+ WAR+HLE+
Sbjct: 146 IEKDLKKIKKYCKVV--RVIAHTQMKLLRQRQKKANIMEIQLNGGSIADKVEWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
PIPV VFAQDEMID IGVTKGKG K
Sbjct: 204 PIPVSNVFAQDEMIDVIGVTKGKGTK 229
>gi|380012028|ref|XP_003690092.1| PREDICTED: 60S ribosomal protein L3-like [Apis florea]
Length = 415
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/265 (69%), Positives = 213/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILETPPM++VGV+GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEAVTILETPPMIVVGVVGYIETPHGLRALTTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LG+K+I D +K+ KYCKV+R+IAHT
Sbjct: 122 WYKSKKKAFTKASKKWQDDLGRKSIENDFKKIVKYCKVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE+P+
Sbjct: 167 ---------------------QMKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA DEMID IGVTKGKG+KG
Sbjct: 206 PVSNVFAPDEMIDVIGVTKGKGYKG 230
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE+P+PV VFA DEMID IGVTKGKG
Sbjct: 168 MKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLEKPVPVSNVFAPDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGK+
Sbjct: 288 GQGIHTKDGKI 298
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKIVKNNASTEYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K++ L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRSALEKINLKFIDTSSKFGHGR 378
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ NDF I C R+I +MKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE+
Sbjct: 146 IENDFKKIVKYC--KVVRIIAHTQMKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
P+PV VFA DEMID IGVTKGKG+K
Sbjct: 204 PVPVSNVFAPDEMIDVIGVTKGKGYK 229
>gi|112982798|ref|NP_001037126.1| ribosomal protein L3 [Bombyx mori]
gi|54609193|gb|AAV34812.1| ribosomal protein L3 [Bombyx mori]
Length = 413
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/265 (70%), Positives = 214/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTI+ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK ++KAFTKASKKWQD+LG+K+I +D +KM +YC V+RVIAHT
Sbjct: 122 WYKCKKKAFTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PVDSVFAQDEMIDCIGVTKGKGYKG 230
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 124/131 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIH KDGKV
Sbjct: 288 GQGIHKKDGKV 298
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKR+ITLRK L+ K+A L +I L + K R
Sbjct: 339 GPKKRIITLRKS--LRVHTKRAALEKINLKFIDTSSKFGHGR 378
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE
Sbjct: 146 IEKDFKKMIRYCSV---VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VFAQDEMIDCIGVTKGKG+K
Sbjct: 203 KPIPVDSVFAQDEMIDCIGVTKGKGYK 229
>gi|66566113|ref|XP_624821.1| PREDICTED: 60S ribosomal protein L3 [Apis mellifera]
Length = 415
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/265 (69%), Positives = 213/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILETPPM++VGV+GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEAVTILETPPMIVVGVVGYIETPHGLRALTTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LG+K+I D +K+ KYCKV+R+IAHT
Sbjct: 122 WYKSKKKAFTKASKKWQDDLGRKSIENDFKKIIKYCKVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE+P+
Sbjct: 167 ---------------------QMKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA DEMID IGVTKGKG+KG
Sbjct: 206 PVSNVFAPDEMIDVIGVTKGKGYKG 230
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE+P+PV VFA DEMID IGVTKGKG
Sbjct: 168 MKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLEKPVPVSNVFAPDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGK+
Sbjct: 288 GQGIHTKDGKI 298
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKIVKNNASTEYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K++ L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRSALEKINLKFIDTSSKFGHGR 378
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF +IK C + R+I +MKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE
Sbjct: 146 IENDFKKIIKYCKV---VRIIAHTQMKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+PV VFA DEMID IGVTKGKG+K
Sbjct: 203 KPVPVSNVFAPDEMIDVIGVTKGKGYK 229
>gi|350424727|ref|XP_003493892.1| PREDICTED: 60S ribosomal protein L3-like [Bombus impatiens]
Length = 414
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/265 (69%), Positives = 211/265 (79%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFVGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILE PPM++VGV+GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEAVTILEAPPMIVVGVVGYIETPHGLRALTTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LG+K+I D K+ KYCKV+R+IAHT
Sbjct: 122 WYKSKKKAFTKASKKWQDDLGRKSIESDFAKIIKYCKVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE P+
Sbjct: 167 ---------------------QMKLLRQRQKKAHIMEIQLNGGTIVDKVQWAREHLENPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA DEMID IGVTKGKG+KG
Sbjct: 206 PVNNVFAPDEMIDVIGVTKGKGYKG 230
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/131 (83%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE P+PV VFA DEMID IGVTKGKG
Sbjct: 168 MKLLRQRQKKAHIMEIQLNGGTIVDKVQWAREHLENPVPVNNVFAPDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGK+
Sbjct: 288 GQGIHTKDGKI 298
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKIVKNNASTEYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K++ L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRSALEKINLKFIDTSSKFGHGR 378
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ +DF +IK C + R+I +MKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE
Sbjct: 146 IESDFAKIIKYCKV---VRIIAHTQMKLLRQRQKKAHIMEIQLNGGTIVDKVQWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
P+PV VFA DEMID IGVTKGKG+K
Sbjct: 203 NPVPVNNVFAPDEMIDVIGVTKGKGYK 229
>gi|332028947|gb|EGI68965.1| 60S ribosomal protein L3 [Acromyrmex echinatior]
Length = 484
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/265 (69%), Positives = 214/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VREAD
Sbjct: 72 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREAD 131
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILETPPM++VG++GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 132 RPGSKVNKKEIVEAVTILETPPMIVVGLVGYIETPHGLRALATVWAEHLSEDCRRRFYKN 191
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LG+K+I DL+K+ KYC V+R+IAHT
Sbjct: 192 WYKSKKKAFTKASKKWQDDLGRKSIEADLKKIKKYCSVVRIIAHT--------------- 236
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE+P+
Sbjct: 237 ---------------------QMKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLEKPV 275
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VFA DEMID IGVTKGKG+KG
Sbjct: 276 PISSVFASDEMIDVIGVTKGKGYKG 300
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE+P+P+ VFA DEMID IGVTKGKG
Sbjct: 238 MKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLEKPVPISSVFASDEMIDVIGVTKGKG 297
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 298 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 357
Query: 428 GAGIHTKDGKV 438
G GIHTKDGK+
Sbjct: 358 GQGIHTKDGKI 368
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 291 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 349
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 350 -MNKKIYRIGQGIHTKDGKIVKNNASTEYDLTDKSITPMGGFPHYGEVNNDFIMIKGCCM 408
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K++ L +I L + K R
Sbjct: 409 GPKKRVITLRKSLLV--HTKRSALEKINLKFIDTSSKFGHGR 448
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R+I +MKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE+P+P+ VFA DEMID I
Sbjct: 231 RIIAHTQMKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLEKPVPISSVFASDEMIDVI 290
Query: 605 GVTKGKGFK 613
GVTKGKG+K
Sbjct: 291 GVTKGKGYK 299
>gi|340724650|ref|XP_003400694.1| PREDICTED: 60S ribosomal protein L3-like [Bombus terrestris]
Length = 414
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 212/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFVGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILE PPM++VGV+GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEAVTILEAPPMIVVGVVGYIETPHGLRALTTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LG+K+I D K+ KYCKV+R++AHT
Sbjct: 122 WYKSKKKAFTKASKKWQDDLGRKSIESDFAKIIKYCKVVRIVAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE+P+
Sbjct: 167 ---------------------QMKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA DEMID IGVTKGKG+KG
Sbjct: 206 PVNNVFAPDEMIDVIGVTKGKGYKG 230
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/131 (83%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE+P+PV VFA DEMID IGVTKGKG
Sbjct: 168 MKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLEKPVPVNNVFAPDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGK+
Sbjct: 288 GQGIHTKDGKI 298
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKIVKNNASTEYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K++ L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRSALEKINLKFIDTSSKFGHGR 378
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ +DF +IK C + R++ +MKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE
Sbjct: 146 IESDFAKIIKYCKV---VRIVAHTQMKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+PV VFA DEMID IGVTKGKG+K
Sbjct: 203 KPVPVNNVFAPDEMIDVIGVTKGKGYK 229
>gi|383848395|ref|XP_003699836.1| PREDICTED: 60S ribosomal protein L3-like [Megachile rotundata]
Length = 432
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 213/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTH+VREAD
Sbjct: 19 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFVGYKAGMTHVVREAD 78
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILETPPM++VGV+GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 79 RPGSKVNKKEIVEAVTILETPPMIVVGVVGYIETPHGLRALTTVWAEHLSEDCRRRFYKN 138
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LG+K+I D +K+ KYCKV+R+IAHT
Sbjct: 139 WYKSKKKAFTKASKKWQDDLGRKSIESDFKKIIKYCKVVRIIAHT--------------- 183
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE+P+
Sbjct: 184 ---------------------QMKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLEKPV 222
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VFA DEMID IGVTKGKG+KG
Sbjct: 223 PISNVFAPDEMIDVIGVTKGKGYKG 247
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE+P+P+ VFA DEMID IGVTKGKG
Sbjct: 185 MKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLEKPVPISNVFAPDEMIDVIGVTKGKG 244
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 245 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 304
Query: 428 GAGIHTKDGKV 438
G GIHTKDGK+
Sbjct: 305 GQGIHTKDGKI 315
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 238 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 296
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 297 -MNKKIYRIGQGIHTKDGKIVKNNASTEYDLTEKTITPMGGFPHYGEVNNDFVMIKGCCM 355
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 356 GPKKRVITLRKSLLV--HTKRAALEKINLKFIDTSSKFGHGR 395
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ +DF +IK C + R+I +MKLL++RQKKAH+MEIQLNGG++ K+ WAR+HLE
Sbjct: 163 IESDFKKIIKYCKV---VRIIAHTQMKLLRQRQKKAHIMEIQLNGGTIEQKVQWAREHLE 219
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+P+ VFA DEMID IGVTKGKG+K
Sbjct: 220 KPVPISNVFAPDEMIDVIGVTKGKGYK 246
>gi|345480304|ref|XP_001600115.2| PREDICTED: 60S ribosomal protein L3-like [Nasonia vitripennis]
Length = 426
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/265 (70%), Positives = 213/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDPTKPVHLTAFIGYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPTKPVHLTAFIGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILETPPM++VGV+GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEAVTILETPPMIVVGVVGYIETPHGLRALTTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LG+ +I +D +K+ KYCKV+RVIAHT
Sbjct: 122 WYKSKKKAFTKASKKWQDDLGRASIEKDFKKIVKYCKVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+ I
Sbjct: 167 ---------------------QMKLLRQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKSI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA DEMID IGVTKGKG+KG
Sbjct: 206 PVNNVFAPDEMIDVIGVTKGKGYKG 230
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 121/131 (92%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+ IPV VFA DEMID IGVTKGKG
Sbjct: 168 MKLLRQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKSIPVNNVFAPDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G IHTKDGK+
Sbjct: 288 GQEIHTKDGKI 298
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLTEKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQEIHTKDGKIVKNNASTEYDLTEKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRAALEKINLKFIDTSSKFGHGR 378
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 59/69 (85%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLL++RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+ IPV VFA DEMID I
Sbjct: 161 RVIAHTQMKLLRQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKSIPVNNVFAPDEMIDVI 220
Query: 605 GVTKGKGFK 613
GVTKGKG+K
Sbjct: 221 GVTKGKGYK 229
>gi|315115447|gb|ADT80696.1| ribosomal protein L3 [Euphydryas aurinia]
Length = 412
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/265 (70%), Positives = 214/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTI+ETPPMV VGV+GY+ETP+GLR+ TVWAEH+S++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPYGLRALLTVWAEHMSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK ++KAFTK+SKKWQD+LG+K+I +D +KM +YC VIR+IAHT
Sbjct: 122 WYKCKKKAFTKSSKKWQDELGRKSIEKDFKKMIRYCSVIRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAHLMEIQ+NGG+V DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHLMEIQVNGGTVDDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PIDSVFAQDEMIDCIGVTKGKGYKG 230
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/131 (87%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAHLMEIQ+NGG+V DK+ WAR+HLE+PIP+ VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHLMEIQVNGGTVDDKVKWAREHLEKPIPIDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRL 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 288 GQGIHTKDGKV 298
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/162 (68%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRLGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L A K R
Sbjct: 339 GPKKRVITLRKS--LRVHTKRAALEKINLKFIDTASKFGHGR 378
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + R+I +MKLLK+RQKKAHLMEIQ+NGG+V DK+ WAR+HLE
Sbjct: 146 IEKDFKKMIRYCSV---IRIIAHTQMKLLKQRQKKAHLMEIQVNGGTVDDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIP+ VFAQDEMIDCIGVTKGKG+K
Sbjct: 203 KPIPIDSVFAQDEMIDCIGVTKGKGYK 229
>gi|18253047|gb|AAL62468.1| ribosomal protein L3 [Spodoptera frugiperda]
Length = 413
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/265 (70%), Positives = 213/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDASKPVHLTAFIGYKAGMTHVVREPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTI+ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK ++KAFTKASKKWQD+LG+K+I +D +KM +YC V+RVIAHT
Sbjct: 122 WYKCKKKAFTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PVDSVFAQDEMIDCIGVTKGKGYKG 230
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 288 GQGIHTKDGKV 298
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 339 GPKKRVITLRKS--LRTHTKRAALEKINLKFIDTSSKFGHGR 378
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 146 IEKDFKKMIRYCSV---VRVIAHTQMKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VFAQDEMIDCIGVTKGKG+K
Sbjct: 203 KPIPVDSVFAQDEMIDCIGVTKGKGYK 229
>gi|84095076|dbj|BAE66653.1| ribosomal protein L3 [Papilio xuthus]
Length = 412
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/265 (70%), Positives = 211/265 (79%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS R RGKVK FPKDDP KPVHLTAFIGYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRSRGKVKAFPKDDPNKPVHLTAFIGYKAGMTHVVREPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTI+ETPPMV VG +GY+ETPHGLR+ TVWAEH+S++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK ++KAFTKASKKWQD+LG+K+I +D +KM +YC VIRVIAHT
Sbjct: 122 WYKCKKKAFTKASKKWQDELGQKSIEKDFKKMIRYCSVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PVDSVFAQDEMIDCIGVTKGKGYKG 230
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/131 (87%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 288 GQGIHTKDGKV 298
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 339 GPKKRVITLRKS--LRVHTKRAALEKINLKFIDTSSKFGHGR 378
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE
Sbjct: 146 IEKDFKKMIRYCSV---IRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VFAQDEMIDCIGVTKGKG+K
Sbjct: 203 KPIPVDSVFAQDEMIDCIGVTKGKGYK 229
>gi|342356437|gb|AEL28877.1| ribosomal protein L3 [Heliconius melpomene cythera]
Length = 412
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/265 (69%), Positives = 213/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDSSKPVHLTAFIGYKAGMTHVVREPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVT++ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTVIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK ++KAFTK+SKKWQD+LG+K+I +D +KM +YC V+RVIAHT
Sbjct: 122 WYKCKKKAFTKSSKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PVDSVFAQDEMIDCIGVTKGKGYKG 230
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 288 GQGIHTKDGKV 298
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 339 GPKKRVITLRKS--LRVHTKRAALEKINLKFIDTSSKFGHGR 378
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 146 IEKDFKKMIRYCSV---VRVIAHTQMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VFAQDEMIDCIGVTKGKG+K
Sbjct: 203 KPIPVDSVFAQDEMIDCIGVTKGKGYK 229
>gi|268306352|gb|ACY95297.1| ribosomal protein L3 [Manduca sexta]
Length = 414
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 213/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FP+DD +KPVHLTAFIGYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDASKPVHLTAFIGYKAGMTHVVREPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTI+ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK ++KAFTKASKKWQD+LG+K+I +D +KM +YC V+R+IAHT
Sbjct: 122 WYKCKKKAFTKASKKWQDELGRKSIEKDFKKMIRYCSVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PIDSVFAQDEMIDCIGVTKGKGYKG 230
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/131 (86%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIP+ VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKPIPIDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 288 GQGIHTKDGKV 298
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/162 (68%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L A K R
Sbjct: 339 GPKKRVITLRKS--LRVHTKRAALEKISLKFIDTASKFGHGR 378
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + R+I +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 146 IEKDFKKMIRYCSV---VRIIAHTQMKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIP+ VFAQDEMIDCIGVTKGKG+K
Sbjct: 203 KPIPIDSVFAQDEMIDCIGVTKGKGYK 229
>gi|194743868|ref|XP_001954422.1| GF16740 [Drosophila ananassae]
gi|190627459|gb|EDV42983.1| GF16740 [Drosophila ananassae]
Length = 415
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/265 (69%), Positives = 208/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDAKKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WARQHLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVNWARQHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 PVSNVFGQDEMIDCVGVTKGKGFKG 230
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/131 (86%), Positives = 124/131 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WARQHLE+PIPV VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHVMEIQLNGGSIEDKVNWARQHLEKPIPVSNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WARQHLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVNWARQHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIPVSNVFGQDEMIDCVGVTKGKGFK 229
>gi|40882439|gb|AAR96131.1| RH62603p [Drosophila melanogaster]
Length = 465
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/275 (67%), Positives = 211/275 (76%), Gaps = 36/275 (13%)
Query: 29 RSARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKA 88
R R + SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKA
Sbjct: 3 RFTRLKRTDMSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKA 62
Query: 89 GMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLS 148
GMTHIVREADRPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS
Sbjct: 63 GMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLS 122
Query: 149 QECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQ 208
+ECRRRFYKNWYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 123 EECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS----- 177
Query: 209 SLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIA 268
Q++L+K+RQKKAH+MEIQLNGGS+ DK+
Sbjct: 178 -------------------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVK 206
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
WAR+HLE+PI V VF QDEMIDC+GVTKGKGFKG
Sbjct: 207 WAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 241
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 179 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 238
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 239 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 298
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 299 GAGIHTKDGKV 309
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 231 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 290
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 291 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 348
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 349 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 389
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 157 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 213
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 214 KPIQVSNVFGQDEMIDCVGVTKGKGFK 240
>gi|332372868|gb|AEE61576.1| unknown [Dendroctonus ponderosae]
Length = 411
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/265 (69%), Positives = 209/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSKRHRGKVKAFPKDDPSKPVHLTAFLGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTILETPPM++VGVIGY+ETPHGLRS TVWAEHL++ECRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTILETPPMIVVGVIGYIETPHGLRSLCTVWAEHLAEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAF+ + KW D LGKK I + K+ KYC +RVIAHT
Sbjct: 122 WYKSKRKAFSSNATKWHDALGKKAIEKQFNKIIKYCSAVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQ+NGG++ADK+AWA++HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQINGGTIADKVAWAKEHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDE+ID IGVTKGKGFKG
Sbjct: 206 PVNQVFGQDEVIDVIGVTKGKGFKG 230
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/131 (87%), Positives = 127/131 (96%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ADK+AWA++HLE+PIPV QVF QDE+ID IGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQINGGTIADKVAWAKEHLEKPIPVNQVFGQDEVIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 116/162 (71%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST YDL+EK+ITPMGGFPHYGEVNND++MIKGCCM
Sbjct: 280 -MNKKIYRIGAGIHTKDGKVIKNNASTAYDLSEKTITPMGGFPHYGEVNNDYIMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ + L +I L A K R
Sbjct: 339 GPKKRVITLRKSLLV--HTSRVALEKINLKFIDTASKFGHGR 378
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 63/69 (91%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLLK+RQKKAH+MEIQ+NGG++ADK+AWA++HLE+PIPV QVF QDE+ID I
Sbjct: 161 RVIAHTQMKLLKQRQKKAHIMEIQINGGTIADKVAWAKEHLEKPIPVNQVFGQDEVIDVI 220
Query: 605 GVTKGKGFK 613
GVTKGKGFK
Sbjct: 221 GVTKGKGFK 229
>gi|389611151|dbj|BAM19187.1| ribosomal protein L3 [Papilio polytes]
Length = 412
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/265 (69%), Positives = 210/265 (79%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS R RGKVK FPKDD KPVHLTAFIGYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRSRGKVKAFPKDDQNKPVHLTAFIGYKAGMTHVVREPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTI+ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK ++KAFTKASKKWQD+LG+K+I +D +KM +YC VIRVIAHT
Sbjct: 122 WYKCKKKAFTKASKKWQDELGQKSIEKDFKKMIRYCSVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMIDCIGVTKGKG+KG
Sbjct: 206 PVDSVFTQDEMIDCIGVTKGKGYKG 230
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/131 (86%), Positives = 124/131 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VF QDEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLEKPIPVDSVFTQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 288 GQGIHTKDGKV 298
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 339 GPKKRVITLRKS--LRVHTKRAALEKINLKFIDTSSKFGHGR 378
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 146 IEKDFKKMIRYCSV---IRVIAHTQMKLLKQRQKKAHIMEIQVNGGTIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VF QDEMIDCIGVTKGKG+K
Sbjct: 203 KPIPVDSVFTQDEMIDCIGVTKGKGYK 229
>gi|195329914|ref|XP_002031655.1| GM23925 [Drosophila sechellia]
gi|194120598|gb|EDW42641.1| GM23925 [Drosophila sechellia]
Length = 611
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMIDCVGVTKGKGFKG 230
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 112/135 (82%), Positives = 126/135 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKVSVTS 442
GAGIHTKDGKVS ++
Sbjct: 288 GAGIHTKDGKVSTST 302
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIQVSNVFGQDEMIDCVGVTKGKGFK 229
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 51/61 (83%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 L 489
+
Sbjct: 280 I 280
>gi|194902102|ref|XP_001980590.1| GG17978 [Drosophila erecta]
gi|190652293|gb|EDV49548.1| GG17978 [Drosophila erecta]
Length = 416
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMIDCVGVTKGKGFKG 230
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 118/163 (72%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLKHTKRSALEKINLKFIDTSSKMGHGR 378
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIQVSNVFGQDEMIDCVGVTKGKGFK 229
>gi|17737907|ref|NP_524316.1| ribosomal protein L3, isoform A [Drosophila melanogaster]
gi|442618558|ref|NP_731548.2| ribosomal protein L3, isoform H [Drosophila melanogaster]
gi|195571809|ref|XP_002103895.1| GD18739 [Drosophila simulans]
gi|3122718|sp|O16797.3|RL3_DROME RecName: Full=60S ribosomal protein L3
gi|2384754|gb|AAC26144.1| ribosomal protein L3 [Drosophila melanogaster]
gi|23170971|gb|AAF54610.2| ribosomal protein L3, isoform A [Drosophila melanogaster]
gi|194199822|gb|EDX13398.1| GD18739 [Drosophila simulans]
gi|440217317|gb|AAN13496.2| ribosomal protein L3, isoform H [Drosophila melanogaster]
Length = 416
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMIDCVGVTKGKGFKG 230
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIQVSNVFGQDEMIDCVGVTKGKGFK 229
>gi|254693009|gb|ACT79354.1| LP14077p [Drosophila melanogaster]
Length = 418
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 4 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 63
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 64 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 123
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 124 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 169 ---------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPI 207
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 208 QVSNVFGQDEMIDCVGVTKGKGFKG 232
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 170 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 229
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 230 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 289
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 290 GAGIHTKDGKV 300
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 222 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 281
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 282 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 339
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 340 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 380
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 148 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 204
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 205 KPIQVSNVFGQDEMIDCVGVTKGKGFK 231
>gi|195499987|ref|XP_002097183.1| GE26079 [Drosophila yakuba]
gi|194183284|gb|EDW96895.1| GE26079 [Drosophila yakuba]
Length = 416
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMIDCVGVTKGKGFKG 230
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIQVSNVFGQDEMIDCVGVTKGKGFK 229
>gi|264667433|gb|ACY71302.1| ribosomal protein L3 [Chrysomela tremula]
Length = 414
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/265 (72%), Positives = 214/265 (80%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFI YKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFISYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTILE PPMV+VGV+GY+ETPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKLNKKEIVEAVTILEAPPMVVVGVVGYIETPHGLRALATVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I +D +K+ KYCKV+RVIAHT
Sbjct: 122 WYKSKKKAFTKASKKWSDDLGKKSIEKDFKKIIKYCKVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQLNGGS+ADK+AWAR H E+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQLNGGSIADKVAWARAHFEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +VFAQDEMIDCIGVTKG G+KG
Sbjct: 206 PVSEVFAQDEMIDCIGVTKGHGYKG 230
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 117/131 (89%), Positives = 126/131 (96%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQLNGGS+ADK+AWAR H E+PIPV +VFAQDEMIDCIGVTKG G
Sbjct: 168 MKLLKQRQKKAHIMEIQLNGGSIADKVAWARAHFEKPIPVSEVFAQDEMIDCIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 118/162 (72%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNA+TDYDL+EK+ITPMGGFPHYGEVNNDF+MIKGCC+
Sbjct: 280 -MNKKIYRIGAGIHTKDGKVIKNNAATDYDLSEKTITPMGGFPHYGEVNNDFVMIKGCCV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+ L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRVALEKINLKFIDTSSKFGHGR 378
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF +IK C + RVI +MKLLK+RQKKAH+MEIQLNGGS+ADK+AWAR H E
Sbjct: 146 IEKDFKKIIKYCKV---VRVIAHTQMKLLKQRQKKAHIMEIQLNGGSIADKVAWARAHFE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV +VFAQDEMIDCIGVTKG G+K
Sbjct: 203 KPIPVSEVFAQDEMIDCIGVTKGHGYK 229
>gi|198455295|ref|XP_001359937.2| GA18487 [Drosophila pseudoobscura pseudoobscura]
gi|198133184|gb|EAL29089.2| GA18487 [Drosophila pseudoobscura pseudoobscura]
Length = 412
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/265 (68%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK SKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKTSKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHIMEIQLNGGSIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMIDCVGVTKGKGFKG 230
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 110/138 (79%), Positives = 126/138 (91%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHIMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKVSVTSRWH 445
GAGIHTKDGK + + ++
Sbjct: 288 GAGIHTKDGKNNASHEYY 305
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/147 (65%), Positives = 109/147 (74%), Gaps = 10/147 (6%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKY-LSMVI-----KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
+ KK Y + I KNNAS +Y LT+KSI PMGGF HYGEVN+ F+MI GCC+G
Sbjct: 280 --INKKIYRIGAGIHTKDGKNNASHEYYLTDKSIAPMGGFAHYGEVNDHFVMINGCCIGS 337
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKR+ITLRK L K K++ L +I+L
Sbjct: 338 KKRIITLRKS--LLKHTKRSALDQIKL 362
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHIMEIQLNGGSIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIQVSNVFGQDEMIDCVGVTKGKGFK 229
>gi|195157752|ref|XP_002019760.1| GL12566 [Drosophila persimilis]
gi|194116351|gb|EDW38394.1| GL12566 [Drosophila persimilis]
Length = 415
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/265 (68%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK SKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKTSKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHIMEIQLNGGSIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMIDCVGVTKGKGFKG 230
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHIMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHIMEIQLNGGSIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIQVSNVFGQDEMIDCVGVTKGKGFK 229
>gi|318087096|gb|ADV40140.1| putative ribosomal protein L3 isoform A [Latrodectus hesperus]
Length = 303
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/265 (69%), Positives = 210/265 (79%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGF PKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSMGFVPKKRSKRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VE VTILETPPMVIVGV+GY+ETP GLR+ KTVWAEHLS++C+RRFYKN
Sbjct: 62 KPGSKVNKKEVVEPVTILETPPMVIVGVVGYIETPKGLRALKTVWAEHLSEDCKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK SKKW ++ G+ I +D +KMAKYCKVIRVIAHT
Sbjct: 122 WYKSKKKAFTKYSKKWAEEAGRVAINKDFKKMAKYCKVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKL++KRQKKAH+MEIQLNGG+++ KI WAR HLE+P+
Sbjct: 167 ---------------------QMKLMRKRQKKAHIMEIQLNGGNISQKIKWARDHLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ QVFAQDEMID IGVTKGKGFKG
Sbjct: 206 PLSQVFAQDEMIDVIGVTKGKGFKG 230
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKL++KRQKKAH+MEIQLNGG+++ KI WAR HLE+P+P+ QVFAQDEMID IGVTKGKG
Sbjct: 168 MKLMRKRQKKAHIMEIQLNGGNISQKIKWARDHLEKPVPLSQVFAQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 288 GQGIHTKDGKV 298
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+N DF M K C + RVI +MKL++KRQKKAH+MEIQLNGG+++ KI WAR HLE
Sbjct: 146 INKDFKKMAKYCKV---IRVIAHTQMKLMRKRQKKAHIMEIQLNGGNISQKIKWARDHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+P+ QVFAQDEMID IGVTKGKGFK
Sbjct: 203 KPVPLSQVFAQDEMIDVIGVTKGKGFK 229
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 62/85 (72%), Gaps = 11/85 (12%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNA 505
+ KK Y V+KNNA
Sbjct: 280 -INKKIYRIGQGIHTKDGKVVKNNA 303
>gi|195453495|ref|XP_002073813.1| GK14309 [Drosophila willistoni]
gi|194169898|gb|EDW84799.1| GK14309 [Drosophila willistoni]
Length = 414
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/265 (67%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRS RHRGKVK FPKDD +KPVHLT F+GYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSCRHRGKVKAFPKDDASKPVHLTCFVGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEM+DC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMVDCVGVTKGKGFKG 230
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE+PI V VF QDEM+DC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLEKPIQVSNVFGQDEMVDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 68/87 (78%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEM+DC+GVTKGKGFK
Sbjct: 203 KPIQVSNVFGQDEMVDCVGVTKGKGFK 229
>gi|195389887|ref|XP_002053605.1| GJ23255 [Drosophila virilis]
gi|194151691|gb|EDW67125.1| GJ23255 [Drosophila virilis]
Length = 415
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/265 (68%), Positives = 204/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRS RHRGKVK FPKDD TKPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSCRHRGKVKAFPKDDATKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVTILETPPM+ VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTILETPPMIAVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSQKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+ +RQKKAH+MEIQLNGGS+ DK+ W R+HLE+PI
Sbjct: 167 ---------------------QIRLINQRQKKAHIMEIQLNGGSIEDKVKWVREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVRNVFGQDEMIDCVGVTKGKGFKG 230
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 121/131 (92%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+ +RQKKAH+MEIQLNGGS+ DK+ W R+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLINQRQKKAHIMEIQLNGGSIEDKVKWVREHLEKPIQVRNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGI+TKDGKV
Sbjct: 288 GAGIYTKDGKV 298
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGIYTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L + K++ L +I+L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLRHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+ +RQKKAH+MEIQLNGGS+ DK+ W R+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLINQRQKKAHIMEIQLNGGSIEDKVKWVREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIQVRNVFGQDEMIDCVGVTKGKGFK 229
>gi|289743297|gb|ADD20396.1| ribosomal protein L3 [Glossina morsitans morsitans]
Length = 413
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/265 (67%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRS RHRGKVK FPKDD +KPVHLT FIGYKAGM+HIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSRRHRGKVKAFPKDDASKPVHLTCFIGYKAGMSHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSQKKAFTKASKKWGDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE+P+
Sbjct: 167 ---------------------QIRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDCIGVTKGKGFKG
Sbjct: 206 AVSNVFGQDEMIDCIGVTKGKGFKG 230
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 110/131 (83%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE+P+ V VF QDEMIDCIGVTKGKG
Sbjct: 168 IRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLEKPVAVSNVFGQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 118/162 (72%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEV NDF+MIKGCC+
Sbjct: 280 -INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVTNDFVMIKGCCI 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
G KKRVITLRK L K K++ L +I+L + K+ R
Sbjct: 339 GSKKRVITLRKT--LLKHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+ V VF QDEMIDCIGVTKGKGFK
Sbjct: 203 KPVAVSNVFGQDEMIDCIGVTKGKGFK 229
>gi|242017396|ref|XP_002429175.1| 60S ribosomal protein L3, putative [Pediculus humanus corporis]
gi|212514053|gb|EEB16437.1| 60S ribosomal protein L3, putative [Pediculus humanus corporis]
Length = 407
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/265 (67%), Positives = 211/265 (79%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FP+DD +KPVHLTAF+GYKAGMTH++READ
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDRSKPVHLTAFLGYKAGMTHVLREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTI+ETPPM+IVG +GY++TPHGLR+ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEAVTIIETPPMIIVGAVGYIQTPHGLRALVTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S QKAFTKASKKWQD+LG K+I + +K+ KYC+ +RVIAHT
Sbjct: 122 WYRSEQKAFTKASKKWQDELGVKSIDKSFKKIIKYCRCVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK+RQKKAH+MEIQLNGG++A K+ W ++HLE+P+
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQLNGGNMAQKVKWIKEHLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVFA DEMIDCIGVTKGKG+KG
Sbjct: 206 PVSQVFAPDEMIDCIGVTKGKGYKG 230
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 124/131 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQLNGG++A K+ W ++HLE+P+PV QVFA DEMIDCIGVTKGKG
Sbjct: 168 MKLLKQRQKKAHIMEIQLNGGNMAQKVKWIKEHLEKPVPVSQVFAPDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIH KDGK+
Sbjct: 288 GQGIHYKDGKL 298
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++ NNASTDYDLTEKSITPMGGFPHYGEVN+DF+MIKGCC+
Sbjct: 280 -MNKKIYRIGQGIHYKDGKLVGNNASTDYDLTEKSITPMGGFPHYGEVNHDFIMIKGCCV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K++ L +I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRSALEKINLKFIDTSSKFGHGR 378
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 67/81 (82%), Gaps = 5/81 (6%)
Query: 534 MIKGC-CMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 592
+IK C C+ RVI +MKLLK+RQKKAH+MEIQLNGG++A K+ W ++HLE+P+PV
Sbjct: 153 IIKYCRCV----RVIAHTQMKLLKQRQKKAHIMEIQLNGGNMAQKVKWIKEHLEKPVPVS 208
Query: 593 QVFAQDEMIDCIGVTKGKGFK 613
QVFA DEMIDCIGVTKGKG+K
Sbjct: 209 QVFAPDEMIDCIGVTKGKGYK 229
>gi|195107417|ref|XP_001998310.1| GI23698 [Drosophila mojavensis]
gi|193914904|gb|EDW13771.1| GI23698 [Drosophila mojavensis]
Length = 415
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/266 (68%), Positives = 206/266 (77%), Gaps = 37/266 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRS+RHRGKVK FPKDD TKPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSSRHRGKVKAFPKDDATKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVTILETPPM+ VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTILETPPMIAVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKS-RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS ++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSEKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS-------------- 167
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE+P
Sbjct: 168 ----------------------QIRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLEKP 205
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I V VF QDEM+DC+GVTKGKGFKG
Sbjct: 206 IQVSNVFGQDEMVDCVGVTKGKGFKG 231
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE+PI V VF QDEM+DC+GVTKGKG
Sbjct: 169 IRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLEKPIQVSNVFGQDEMVDCVGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 229 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 288
Query: 428 GAGIHTKDGKV 438
GAGIHT+DGKV
Sbjct: 289 GAGIHTQDGKV 299
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 221 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 280
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 281 --INKKIYRIGAGIHTQDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 338
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKRVITLRK L + K++ L +I+L + K+ R
Sbjct: 339 IGSKKRVITLRKS--LLRHTKRSALEQIKLKFIDTSSKMGHGR 379
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 68/87 (78%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ W R+HLE
Sbjct: 147 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHIMEIQLNGGSIEDKVKWVREHLE 203
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEM+DC+GVTKGKGFK
Sbjct: 204 KPIQVSNVFGQDEMVDCVGVTKGKGFK 230
>gi|121543847|gb|ABM55588.1| putative ribosomal protein L3 [Maconellicoccus hirsutus]
Length = 406
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 210/265 (79%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKR+ RHRG+VK FPKDDP+KPVHLT F+GYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRARRHRGRVKSFPKDDPSKPVHLTTFLGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVE VTI+ETPPMVIVGV+GY+ETPHGL++ TVWAEHLS++CRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEPVTIIETPPMVIVGVVGYIETPHGLKALSTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK++++AFTKASKKWQD LG+K I ++L K++KYCKV+RVIAHT
Sbjct: 122 WYKAKKRAFTKASKKWQDPLGRKAIDKELAKISKYCKVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLK RQKK+H+MEIQ+NGG+V +K+ WA+ H E+ +
Sbjct: 167 ---------------------QMKLLKFRQKKSHIMEIQVNGGTVPEKVQWAKAHFEKAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMIDCI VTKGKG+KG
Sbjct: 206 PVSHVFAQDEMIDCIAVTKGKGYKG 230
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/131 (83%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK RQKK+H+MEIQ+NGG+V +K+ WA+ H E+ +PV VFAQDEMIDCI VTKGKG
Sbjct: 168 MKLLKFRQKKSHIMEIQVNGGTVPEKVQWAKAHFEKAVPVSHVFAQDEMIDCIAVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/156 (68%), Positives = 118/156 (75%), Gaps = 13/156 (8%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE + KK
Sbjct: 227 GYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE--INKKI 284
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y V+KNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCC+GPKKRV
Sbjct: 285 YRIGAGIHTKDGKVVKNNASTEYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCVGPKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
ITLRK L+ K++ L +I L + K R
Sbjct: 345 ITLRKSLLV--HTKRSSLEKINLKFIDTSSKFGHGR 378
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 57/69 (82%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLLK RQKK+H+MEIQ+NGG+V +K+ WA+ H E+ +PV VFAQDEMIDCI
Sbjct: 161 RVIAHTQMKLLKFRQKKSHIMEIQVNGGTVPEKVQWAKAHFEKAVPVSHVFAQDEMIDCI 220
Query: 605 GVTKGKGFK 613
VTKGKG+K
Sbjct: 221 AVTKGKGYK 229
>gi|195055484|ref|XP_001994649.1| GH14923 [Drosophila grimshawi]
gi|193892412|gb|EDV91278.1| GH14923 [Drosophila grimshawi]
Length = 417
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/265 (67%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRS RHRGKVK +PKDD +KPVHLT FIGYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSCRHRGKVKAYPKDDASKPVHLTCFIGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM+ VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIAVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WFKSQKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGSV DK+ W R+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHIMEIQLNGGSVEDKVKWVREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +VF QDEM+DC+GVTKGKGFKG
Sbjct: 206 QVSKVFGQDEMVDCVGVTKGKGFKG 230
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGSV DK+ W R+HLE+PI V +VF QDEM+DC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHIMEIQLNGGSVEDKVKWVREHLEKPIQVSKVFGQDEMVDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAG+HTKDGKV
Sbjct: 288 GAGVHTKDGKV 298
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGVHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L + K++ L +I+L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLRHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGSV DK+ W R+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHIMEIQLNGGSVEDKVKWVREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V +VF QDEM+DC+GVTKGKGFK
Sbjct: 203 KPIQVSKVFGQDEMVDCVGVTKGKGFK 229
>gi|193580256|ref|XP_001951042.1| PREDICTED: 60S ribosomal protein L3-like [Acyrthosiphon pisum]
Length = 408
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/265 (67%), Positives = 211/265 (79%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKR+ RHRG+VK FPKDDP+KP+HLTAFI YKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRARRHRGRVKSFPKDDPSKPIHLTAFIAYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVE VTILE PPM+IVGV+GYVETP+GL+ KTV+AEHLS++CRRRFYKN
Sbjct: 62 RPGSKLNKKEIVEPVTILEAPPMIIVGVVGYVETPYGLKPLKTVFAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAF K S+KWQD+ GK+ IA+DL K+AKY KVIRV+AHT
Sbjct: 122 WYKSKKKAFVKYSRKWQDENGKRQIAKDLGKIAKYSKVIRVVAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLKKRQKKAH+MEIQ+NGG+VA+K+ WA++H E+P+
Sbjct: 167 ---------------------QMKLLKKRQKKAHIMEIQVNGGTVAEKVQWAKEHFEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA DEMIDCIGVTKG+G+KG
Sbjct: 206 PVSHVFAPDEMIDCIGVTKGRGYKG 230
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/131 (85%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLKKRQKKAH+MEIQ+NGG+VA+K+ WA++H E+P+PV VFA DEMIDCIGVTKG+G
Sbjct: 168 MKLLKKRQKKAHIMEIQVNGGTVAEKVQWAKEHFEKPVPVSHVFAPDEMIDCIGVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 288 GLGIHTKDGKV 298
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/162 (68%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGRGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDLTEK+ITPMGGFPHYGEVNNDFLMIKGCC+
Sbjct: 280 -INKKIYRIGLGIHTKDGKVIKNNASTEYDLTEKTITPMGGFPHYGEVNNDFLMIKGCCV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L I L + K R
Sbjct: 339 GPKKRVITLRKSLLV--HTKRAALESINLKFIDTSSKFGHGR 378
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +MKLLKKRQKKAH+MEIQ+NGG+VA+K+ WA++H E+P+PV VFA DEMIDCI
Sbjct: 161 RVVAHTQMKLLKKRQKKAHIMEIQVNGGTVAEKVQWAKEHFEKPVPVSHVFAPDEMIDCI 220
Query: 605 GVTKGKGFK 613
GVTKG+G+K
Sbjct: 221 GVTKGRGYK 229
>gi|443731990|gb|ELU16883.1| hypothetical protein CAPTEDRAFT_21042 [Capitella teleta]
Length = 414
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/265 (67%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KPVHLT+F+ YKAGMTH+VRE D
Sbjct: 12 SHRKFSAPRHGSLGFLPRKRSTRHRGKVKAFPKDDPSKPVHLTSFLAYKAGMTHVVREVD 71
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +KKE+V+AVTILE PPM+ +GVIGY+ETP GLR+ KTVWAEHLS+ECRRRFYKN
Sbjct: 72 RPGSKAHKKEVVDAVTILEAPPMIAIGVIGYIETPRGLRALKTVWAEHLSEECRRRFYKN 131
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTKASKKWQD++GKK I +DL KM KYC VIRVIAHT
Sbjct: 132 WYRSKKKAFTKASKKWQDEVGKKEIEKDLAKMKKYCSVIRVIAHT--------------- 176
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLKKRQKKAH+MEIQ+NGG+VA K+ WAR+H E+ I
Sbjct: 177 ---------------------QMKLLKKRQKKAHIMEIQVNGGTVAQKVDWAREHFEKQI 215
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA DEMIDCIGVTKG GFKG
Sbjct: 216 PVDSVFAPDEMIDCIGVTKGHGFKG 240
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 121/131 (92%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLKKRQKKAH+MEIQ+NGG+VA K+ WAR+H E+ IPV VFA DEMIDCIGVTKG G
Sbjct: 178 MKLLKKRQKKAHIMEIQVNGGTVAQKVDWAREHFEKQIPVDSVFAPDEMIDCIGVTKGHG 237
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIYRM
Sbjct: 238 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYRM 297
Query: 428 GAGIHTKDGKV 438
G G+HT++GK+
Sbjct: 298 GKGVHTENGKL 308
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/150 (64%), Positives = 111/150 (74%), Gaps = 13/150 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+
Sbjct: 231 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 290
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK M +IKNN ST+YD+TEK+ITPMGGFPHYGEVN DF+M+ GCC
Sbjct: 291 ---NKKIYRMGKGVHTENGKLIKNNGSTEYDVTEKTITPMGGFPHYGEVNQDFIMLGGCC 347
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
MGPKKRVITLRK L ++K M ++
Sbjct: 348 MGPKKRVITLRKSLLTHTKRKALEKMNLKF 377
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ D +K C RVI +MKLLKKRQKKAH+MEIQ+NGG+VA K+ WAR+H E
Sbjct: 155 EIEKDLAKMKKYC--SVIRVIAHTQMKLLKKRQKKAHIMEIQVNGGTVAQKVDWAREHFE 212
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ IPV VFA DEMIDCIGVTKG GFK
Sbjct: 213 KQIPVDSVFAPDEMIDCIGVTKGHGFK 239
>gi|321458193|gb|EFX69265.1| hypothetical protein DAPPUDRAFT_301006 [Daphnia pulex]
Length = 416
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/265 (67%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKR HRG+VK FP DDP KP+HLTAF+ YKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRCRSHRGRVKSFPHDDPKKPIHLTAFLAYKAGMTHIVRECD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTILETPPMVIVG++GYV TP GLR+ KTVWAEH+ ++CRRRFYKN
Sbjct: 62 KPGSKVNKKEVVEAVTILETPPMVIVGIVGYVATPKGLRALKTVWAEHIGEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LGKK I ++LR M +YCKVIRVIAHT
Sbjct: 122 WYKSKKKAFTKASKKWQDDLGKKVIEKELRAMKRYCKVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQ+NGG+V K+ WARQHLE+ I
Sbjct: 167 ---------------------QMKLLRQRQKKAHMMEIQVNGGTVRQKVDWARQHLEKTI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +FAQDEMID IGVTKGKGFKG
Sbjct: 206 PITSLFAQDEMIDVIGVTKGKGFKG 230
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQ+NGG+V K+ WARQHLE+ IP+ +FAQDEMID IGVTKGKG
Sbjct: 168 MKLLRQRQKKAHMMEIQVNGGTVRQKVDWARQHLEKTIPITSLFAQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHT+KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTRKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHT+ GKV
Sbjct: 288 GKGIHTRKGKV 298
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 118/162 (72%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHT+KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTRKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNA+T+YDLT+KSITPMGGF HYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGKGIHTRKGKVIKNNAATEYDLTDKSITPMGGFVHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L K+ L +I+L + K R
Sbjct: 339 GPKKRVITLRKA--LVTSAKRVALEKIELKFIDTSSKFGHGR 378
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 59/69 (85%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLL++RQKKAH+MEIQ+NGG+V K+ WARQHLE+ IP+ +FAQDEMID I
Sbjct: 161 RVIAHTQMKLLRQRQKKAHMMEIQVNGGTVRQKVDWARQHLEKTIPITSLFAQDEMIDVI 220
Query: 605 GVTKGKGFK 613
GVTKGKGFK
Sbjct: 221 GVTKGKGFK 229
>gi|358443194|gb|AEU11843.1| control protein HCTL036 [Heliconius erato]
Length = 392
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/256 (68%), Positives = 204/256 (79%), Gaps = 36/256 (14%)
Query: 48 HGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKK 107
HGSMGFYPKKRS RHRGKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE DRPGSKINKK
Sbjct: 1 HGSMGFYPKKRSRRHRGKVKAFPKDDASKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 60
Query: 108 EIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAF 167
EIVEAVT++ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKNWYK ++KAF
Sbjct: 61 EIVEAVTVIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCKKKAF 120
Query: 168 TKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNV 227
TK+SKKWQD+LG+K+I +D +KM +YC VIRVIAHT
Sbjct: 121 TKSSKKWQDELGRKSIEKDFKKMIRYCSVIRVIAHT------------------------ 156
Query: 228 NKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQD 287
QMKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQD
Sbjct: 157 ------------QMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQD 204
Query: 288 EMIDCIGVTKGKGFKG 303
EMIDCIGVTKGKG+KG
Sbjct: 205 EMIDCIGVTKGKGYKG 220
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 158 MKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 217
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 218 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 277
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 278 GQGIHTKDGKV 288
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 211 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 269
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 270 -MNKKIYRIGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 328
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 329 GPKKRVITLRKS--LRVHTKRAALEKINLKFIDTSSKFGHGR 368
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 136 IEKDFKKMIRYCSV---IRVIAHTQMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLE 192
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VFAQDEMIDCIGVTKGKG+K
Sbjct: 193 KPIPVDSVFAQDEMIDCIGVTKGKGYK 219
>gi|321477553|gb|EFX88511.1| hypothetical protein DAPPUDRAFT_206128 [Daphnia pulex]
Length = 412
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/265 (67%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKR HRG+VK FP DDP KP+HLTAF+ YKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRCRSHRGRVKSFPHDDPKKPIHLTAFLAYKAGMTHIVRECD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTILETPPMVIVG++GYV TP GLR+ KTVWAEH+ ++CRRRFYKN
Sbjct: 62 KPGSKVNKKEVVEAVTILETPPMVIVGIVGYVATPKGLRALKTVWAEHIGEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKWQD LGKK I ++LR M +YCKVIRVIAHT
Sbjct: 122 WYKSKKKAFTKASKKWQDDLGKKVIEKELRAMKRYCKVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL++RQKKAH+MEIQ+NGG++ K+ WARQHLE+ I
Sbjct: 167 ---------------------QMKLLRQRQKKAHMMEIQVNGGTIRQKVDWARQHLEKTI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +FAQDEMID IGVTKGKGFKG
Sbjct: 206 PITSLFAQDEMIDVIGVTKGKGFKG 230
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/131 (81%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQ+NGG++ K+ WARQHLE+ IP+ +FAQDEMID IGVTKGKG
Sbjct: 168 MKLLRQRQKKAHMMEIQVNGGTIRQKVDWARQHLEKTIPITSLFAQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHT+KLPRKTHKGLRKVACIGAWHPSRVQ+TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTRKLPRKTHKGLRKVACIGAWHPSRVQYTVARAGQKGYHHRTEMNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHT+ GKV
Sbjct: 288 GKGIHTRKGKV 298
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHT+KLPRKTHKGLRKVACIGAWHPSRVQ+TVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTRKLPRKTHKGLRKVACIGAWHPSRVQYTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNA+T+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 280 -MNKKIYRIGKGIHTRKGKVIKNNAATEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L K+ L +I+L + K R
Sbjct: 339 GPKKRVITLRKA--LVTSAKRVALEKIELKFIDTSSKFGHGR 378
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 59/69 (85%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLL++RQKKAH+MEIQ+NGG++ K+ WARQHLE+ IP+ +FAQDEMID I
Sbjct: 161 RVIAHTQMKLLRQRQKKAHMMEIQVNGGTIRQKVDWARQHLEKTIPITSLFAQDEMIDVI 220
Query: 605 GVTKGKGFK 613
GVTKGKGFK
Sbjct: 221 GVTKGKGFK 229
>gi|358443182|gb|AEU11837.1| control protein HCTL036 [Heliconius melpomene]
Length = 392
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/256 (68%), Positives = 204/256 (79%), Gaps = 36/256 (14%)
Query: 48 HGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKK 107
HGSMGFYPKKRS RHRGKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE DRPGSKINKK
Sbjct: 1 HGSMGFYPKKRSRRHRGKVKAFPKDDSSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 60
Query: 108 EIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAF 167
EIVEAVT++ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKNWYK ++KAF
Sbjct: 61 EIVEAVTVIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCKKKAF 120
Query: 168 TKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNV 227
TK+SKKWQD+LG+K+I +D +KM +YC V+RVIAHT
Sbjct: 121 TKSSKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHT------------------------ 156
Query: 228 NKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQD 287
QMKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQD
Sbjct: 157 ------------QMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQD 204
Query: 288 EMIDCIGVTKGKGFKG 303
EMIDCIGVTKGKG+KG
Sbjct: 205 EMIDCIGVTKGKGYKG 220
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 158 MKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 217
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 218 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 277
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 278 GQGIHTKDGKV 288
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 211 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 269
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 270 -MNKKIYRIGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 328
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 329 GPKKRVITLRKS--LRVHTKRAALEKINLKFIDTSSKFGHGR 368
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 136 IEKDFKKMIRYCSV---VRVIAHTQMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLE 192
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VFAQDEMIDCIGVTKGKG+K
Sbjct: 193 KPIPVDSVFAQDEMIDCIGVTKGKGYK 219
>gi|308323287|gb|ADO28780.1| 60S ribosomal protein l3 [Ictalurus punctatus]
Length = 403
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDPTKPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPTKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM++VG++GYVETP GLRSFKTV+AEH+S ECRRRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMMVVGIVGYVETPRGLRSFKTVFAEHISDECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK SKKWQD GKK + +D M KYCKVIR+IAHT
Sbjct: 122 WYKSKKKAFTKYSKKWQDDEGKKQLEKDFSSMKKYCKVIRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLMEIQLNGG++++K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKSHLMEIQLNGGTISEKVDWAREKLEQAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF+QDEMID IGVTKG G+KG
Sbjct: 206 PINNVFSQDEMIDVIGVTKGHGYKG 230
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 119/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQLNGG++++K+ WAR+ LEQ +P+ VF+QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHLMEIQLNGGTISEKVDWAREKLEQAVPINNVFSQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEVNKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTKDGKV
Sbjct: 288 GQGYHTKDGKV 298
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 111/147 (75%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEV 280
Query: 489 ---LFLCKKKYLS---MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + Y + VIKNNASTDYDL+ KSI P+GGF HYGEV NDFLM+KGC +G
Sbjct: 281 NKKIYKIGQGYHTKDGKVIKNNASTDYDLSNKSINPLGGFVHYGEVTNDFLMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ ++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTSRRALERIDLKF 367
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLMEIQLNGG++++K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYC--KVIRIIAHTQMRLLPLRQKKSHLMEIQLNGGTISEKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +P+ VF+QDEMID IGVTKG G+K
Sbjct: 203 QAVPINNVFSQDEMIDVIGVTKGHGYK 229
>gi|348569536|ref|XP_003470554.1| PREDICTED: 60S ribosomal protein L3-like [Cavia porcellus]
Length = 403
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLRSFKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRSFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD +GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDMGKKQLDKDFSSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ I
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWAREKLEQQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 104/131 (79%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ IPV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWAREKLEQQIPVSQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLDKDFSSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IPV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQIPVSQVFGQDEMIDVIGVTKGKGYK 229
>gi|354494770|ref|XP_003509508.1| PREDICTED: 60S ribosomal protein L3-like [Cricetulus griseus]
gi|344245574|gb|EGW01678.1| 60S ribosomal protein L3 [Cricetulus griseus]
Length = 403
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD +GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDMGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|395753420|ref|XP_002831202.2| PREDICTED: 60S ribosomal protein L3 [Pongo abelii]
Length = 418
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 17 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 76
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 77 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 136
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 137 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 182
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 183 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 220
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 221 PVNQVFGQDEMIDVIGVTKGKGYKG 245
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 183 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 242
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 243 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 302
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 303 GQGYLIKDGKL 313
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 236 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 295
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 296 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 355
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 356 KKRVLTLRKSLLVQTKRRALEKIDLKF 382
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 160 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 217
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 218 QQVPVNQVFGQDEMIDVIGVTKGKGYK 244
>gi|60654345|gb|AAX29863.1| ribosomal protein L3 [synthetic construct]
Length = 404
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|4506649|ref|NP_000958.1| 60S ribosomal protein L3 isoform a [Homo sapiens]
gi|302148475|ref|NP_001180483.1| ribosomal protein L3 [Macaca mulatta]
gi|397502001|ref|XP_003821661.1| PREDICTED: 60S ribosomal protein L3 isoform 1 [Pan paniscus]
gi|402884272|ref|XP_003905611.1| PREDICTED: 60S ribosomal protein L3 [Papio anubis]
gi|426394514|ref|XP_004063540.1| PREDICTED: 60S ribosomal protein L3 isoform 1 [Gorilla gorilla
gorilla]
gi|730565|sp|P39023.2|RL3_HUMAN RecName: Full=60S ribosomal protein L3; AltName: Full=HIV-1 TAR
RNA-binding protein B; Short=TARBP-B
gi|313659|emb|CAA51839.1| ribosomal protein L3 [Homo sapiens]
gi|12803201|gb|AAH02408.1| Ribosomal protein L3 [Homo sapiens]
gi|13623709|gb|AAH06483.1| Ribosomal protein L3, isoform a [Homo sapiens]
gi|14124954|gb|AAH08003.1| Ribosomal protein L3 [Homo sapiens]
gi|15082461|gb|AAH12146.1| Ribosomal protein L3 [Homo sapiens]
gi|15215372|gb|AAH12786.1| Ribosomal protein L3 [Homo sapiens]
gi|15489128|gb|AAH13674.1| Ribosomal protein L3 [Homo sapiens]
gi|15559314|gb|AAH14017.1| Ribosomal protein L3 [Homo sapiens]
gi|15929157|gb|AAH15032.1| Ribosomal protein L3, isoform a [Homo sapiens]
gi|16041773|gb|AAH15767.1| Ribosomal protein L3 [Homo sapiens]
gi|21104408|dbj|BAB93474.1| ribosomal protein L3 [Homo sapiens]
gi|39794638|gb|AAH63662.1| Ribosomal protein L3 [Homo sapiens]
gi|47678663|emb|CAG30452.1| RPL3 [Homo sapiens]
gi|56972440|gb|AAH88373.1| Ribosomal protein L3 [Homo sapiens]
gi|78395076|gb|AAI07712.1| Ribosomal protein L3 [Homo sapiens]
gi|90075246|dbj|BAE87303.1| unnamed protein product [Macaca fascicularis]
gi|90076620|dbj|BAE87990.1| unnamed protein product [Macaca fascicularis]
gi|90076640|dbj|BAE88000.1| unnamed protein product [Macaca fascicularis]
gi|109451472|emb|CAK54597.1| RPL3 [synthetic construct]
gi|109452068|emb|CAK54896.1| RPL3 [synthetic construct]
gi|119580714|gb|EAW60310.1| ribosomal protein L3, isoform CRA_a [Homo sapiens]
gi|189055072|dbj|BAG38056.1| unnamed protein product [Homo sapiens]
gi|261859736|dbj|BAI46390.1| ribosomal protein L3 [synthetic construct]
Length = 403
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|343959926|dbj|BAK63820.1| 60S ribosomal protein L3 [Pan troglodytes]
Length = 403
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|38454246|ref|NP_942048.1| 60S ribosomal protein L3 [Rattus norvegicus]
gi|132958|sp|P21531.3|RL3_RAT RecName: Full=60S ribosomal protein L3; AltName: Full=L4
gi|57698|emb|CAA44095.1| ribosomal protein L3 [Rattus rattus]
gi|37231753|gb|AAH58494.1| Ribosomal protein L3 [Rattus norvegicus]
gi|149065896|gb|EDM15769.1| ribosomal protein L3, isoform CRA_b [Rattus norvegicus]
Length = 403
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|449271919|gb|EMC82093.1| 60S ribosomal protein L3 [Columba livia]
Length = 409
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 208/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 8 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 67
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYV+TPHGLRSFKT++AEH+S EC+RRFYKN
Sbjct: 68 RPGSKVNKKEVVEAVTIIETPPMVIVGIVGYVKTPHGLRSFKTIFAEHISDECKRRFYKN 127
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRV+AHTQ
Sbjct: 128 WHKSKKKAFTKYCKKWQDEEGKKQLEKDFNSMKKYCQVIRVMAHTQ-------------- 173
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 174 ----------------------MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQV 211
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMID IGVTKGKG+KG
Sbjct: 212 PVSTVFAQDEMIDVIGVTKGKGYKG 236
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +PV VFAQDEMID IGVTKGKG
Sbjct: 174 MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVPVSTVFAQDEMIDVIGVTKGKG 233
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 234 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 293
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 294 GQGYQIKDGKL 304
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 227 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 285
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 286 -INKKIYKIGQGYQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVV 344
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ +++ ++++
Sbjct: 345 GTKKRVLTLRKSLLVQTKRRALEKIDLKF 373
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 151 QLEKDFNSMKKYCQVI--RVMAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLE 208
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VFAQDEMID IGVTKGKG+K
Sbjct: 209 QQVPVSTVFAQDEMIDVIGVTKGKGYK 235
>gi|119580719|gb|EAW60315.1| ribosomal protein L3, isoform CRA_f [Homo sapiens]
Length = 430
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/266 (66%), Positives = 207/266 (77%), Gaps = 36/266 (13%)
Query: 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREA 97
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE
Sbjct: 28 GSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 87
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
DRPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYK
Sbjct: 88 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 147
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
NW+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 148 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ------------- 194
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ
Sbjct: 195 -----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQ 231
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PV QVF QDEMID IGVTKGKG+KG
Sbjct: 232 VPVNQVFGQDEMIDVIGVTKGKGYKG 257
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 195 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 254
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 255 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 314
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 315 GQGYLIKDGKL 325
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 248 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 307
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 308 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 367
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 368 KKRVLTLRKSLLVQTKRRALEKIDLKF 394
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 172 QLEKDFSSMKKYCQ--VIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 229
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 230 QQVPVNQVFGQDEMIDVIGVTKGKGYK 256
>gi|14250148|gb|AAH08492.1| Ribosomal protein L3 [Homo sapiens]
Length = 403
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/146 (72%), Positives = 123/146 (84%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKT 453
G G KDGK+ + LP K+
Sbjct: 288 GQGYLIKDGKLIKNNASTDYDLPDKS 313
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL +KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLPDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|296236921|ref|XP_002763538.1| PREDICTED: 60S ribosomal protein L3 isoform 1 [Callithrix jacchus]
Length = 403
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVSEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVSEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVSEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|444723833|gb|ELW64463.1| 60S ribosomal protein L3, partial [Tupaia chinensis]
Length = 402
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 1 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 61 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 121 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 205 PVNQVFGQDEMIDVIGVTKGKGYKG 229
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 167 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 226
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 286
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 287 GQGYLIKDGKL 297
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 220 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 279
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 280 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 339
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 340 KKRVLTLRKSLLVQTKRRALEKIDLKF 366
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 144 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 201
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 202 QQVPVNQVFGQDEMIDVIGVTKGKGYK 228
>gi|307169360|gb|EFN62081.1| 60S ribosomal protein L3 [Camponotus floridanus]
Length = 402
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/253 (67%), Positives = 200/253 (79%), Gaps = 36/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGFYPKKRS RHRGKVK FPKDD KPVHLTAFIGYKAGMTH+VREADRPGSK+NKKEIV
Sbjct: 1 MGFYPKKRSQRHRGKVKAFPKDDSNKPVHLTAFIGYKAGMTHVVREADRPGSKVNKKEIV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
EAVTILETPPM++VG++GY+ETPHGLR+ TVWAEHLS++CRRRFYKNWYKS++KAFTKA
Sbjct: 61 EAVTILETPPMIVVGLVGYIETPHGLRALATVWAEHLSEDCRRRFYKNWYKSKKKAFTKA 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKKWQD LG+K+I DL+K+ KYC V+R+IAHT
Sbjct: 121 SKKWQDDLGRKSIEADLKKIKKYCSVVRIIAHT--------------------------- 153
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
QMKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE+P+PV VFA DEMI
Sbjct: 154 ---------QMKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLEKPVPVSNVFASDEMI 204
Query: 291 DCIGVTKGKGFKG 303
D IGVTKGKG+KG
Sbjct: 205 DVIGVTKGKGYKG 217
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/131 (83%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE+P+PV VFA DEMID IGVTKGKG
Sbjct: 155 MKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLEKPVPVSNVFASDEMIDVIGVTKGKG 214
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 215 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 274
Query: 428 GAGIHTKDGKV 438
G GIHTKDGK+
Sbjct: 275 GQGIHTKDGKI 285
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 108/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 208 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 266
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 267 -MNKKIYRIGQGIHTKDGKIVKNNASTEYDLTEKTITPMGGFPHYGEVNNDFVMIKGCCM 325
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 326 GPKKRVITLRKSLLV--HTKRAALEKINLKFIDTSSKFGHGR 365
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C R+I +MKLL++RQKKAH+MEIQLNGG++ DK+ WAR+HLE+
Sbjct: 133 IEADLKKIKKYC--SVVRIIAHTQMKLLRQRQKKAHIMEIQLNGGTIEDKVQWAREHLEK 190
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
P+PV VFA DEMID IGVTKGKG+K
Sbjct: 191 PVPVSNVFASDEMIDVIGVTKGKGYK 216
>gi|395819741|ref|XP_003783238.1| PREDICTED: 60S ribosomal protein L3 [Otolemur garnettii]
Length = 403
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|119580720|gb|EAW60316.1| ribosomal protein L3, isoform CRA_g [Homo sapiens]
Length = 286
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/116 (81%), Positives = 107/116 (92%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKK 423
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKK
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKK 283
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 52/60 (86%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
>gi|119580717|gb|EAW60313.1| ribosomal protein L3, isoform CRA_d [Homo sapiens]
Length = 429
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 28 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 87
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 88 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 147
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 148 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 193
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 194 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 231
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 232 PVNQVFGQDEMIDVIGVTKGKGYKG 256
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 194 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 253
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 254 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 313
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 314 GQGYLIKDGKL 324
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 247 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 306
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 307 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 366
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 367 KKRVLTLRKSLLVQTKRRALEKIDLKF 393
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 171 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 228
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 229 QQVPVNQVFGQDEMIDVIGVTKGKGYK 255
>gi|403282966|ref|XP_003932901.1| PREDICTED: 60S ribosomal protein L3 [Saimiri boliviensis
boliviensis]
Length = 403
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GK+ + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKRQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVSEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVSEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVSEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|291389862|ref|XP_002711434.1| PREDICTED: ribosomal protein L3-like [Oryctolagus cuniculus]
Length = 403
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GK+ + +D M KYC+VIRV+AHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ DF +K C RV+ +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLDKDFSSMKKYCQVI--RVLAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSQVFGQDEMIDVIGVTKGKGYK 229
>gi|402876884|ref|XP_003902181.1| PREDICTED: 60S ribosomal protein L3-like, partial [Papio anubis]
Length = 279
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 102/112 (91%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 419
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYH RTE
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHLRTE 279
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 50/59 (84%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYH RTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHLRTE 279
>gi|75076108|sp|Q4R5Q0.3|RL3_MACFA RecName: Full=60S ribosomal protein L3
gi|67970465|dbj|BAE01575.1| unnamed protein product [Macaca fascicularis]
Length = 403
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+V AVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGA HP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGA HP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|74185347|dbj|BAE30149.1| unnamed protein product [Mus musculus]
Length = 403
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D + M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFKSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFKSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|307204449|gb|EFN83156.1| 60S ribosomal protein L3 [Harpegnathos saltator]
Length = 402
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 171/253 (67%), Positives = 201/253 (79%), Gaps = 36/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTHIVREADR GSKINKKEIV
Sbjct: 1 MGFYPKKRSQRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHIVREADRQGSKINKKEIV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
EAVTILETPPM++VG++GY+ETPHGLR+ TVWAEHLS++CRRRFYKNWYKS++KAFTKA
Sbjct: 61 EAVTILETPPMIVVGIVGYIETPHGLRALSTVWAEHLSEDCRRRFYKNWYKSKKKAFTKA 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKKWQD +G+K+I DL+K+ KYC V+R+I HT
Sbjct: 121 SKKWQDDIGRKSIEADLKKIKKYCSVVRIITHT--------------------------- 153
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
QMKLL++RQKKAH+ME+QLNGG++ DK+ WAR+HLE+P+PV VFA+DEMI
Sbjct: 154 ---------QMKLLRQRQKKAHIMEVQLNGGTIEDKVQWAREHLEKPVPVSSVFARDEMI 204
Query: 291 DCIGVTKGKGFKG 303
D IGVTKGKG+KG
Sbjct: 205 DVIGVTKGKGYKG 217
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 124/131 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL++RQKKAH+ME+QLNGG++ DK+ WAR+HLE+P+PV VFA+DEMID IGVTKGKG
Sbjct: 155 MKLLRQRQKKAHIMEVQLNGGTIEDKVQWAREHLEKPVPVSSVFARDEMIDVIGVTKGKG 214
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 215 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 274
Query: 428 GAGIHTKDGKV 438
G GIHTKDGK+
Sbjct: 275 GQGIHTKDGKI 285
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 208 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 266
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 267 -MNKKIYRIGQGIHTKDGKIVKNNASTEYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCM 325
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K++ L +I L + K R
Sbjct: 326 GPKKRVITLRKSLLV--HTKRSALEKINLKFIDTSSKFGHGR 365
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C R+IT +MKLL++RQKKAH+ME+QLNGG++ DK+ WAR+HLE+
Sbjct: 133 IEADLKKIKKYC--SVVRIITHTQMKLLRQRQKKAHIMEVQLNGGTIEDKVQWAREHLEK 190
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
P+PV VFA+DEMID IGVTKGKG+K
Sbjct: 191 PVPVSSVFARDEMIDVIGVTKGKGYK 216
>gi|74181618|dbj|BAE30074.1| unnamed protein product [Mus musculus]
Length = 403
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGA 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|346227212|ref|NP_001230992.1| ribosomal protein L3 [Sus scrofa]
Length = 403
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|357623605|gb|EHJ74691.1| ribosomal protein L3 [Danaus plexippus]
Length = 399
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 174/253 (68%), Positives = 201/253 (79%), Gaps = 36/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGFYPKKRS RHRGKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE DRPGSKINKKEIV
Sbjct: 1 MGFYPKKRSRRHRGKVKAFPKDDASKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
EAVTI+ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKNWYK ++KAFTK+
Sbjct: 61 EAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCKKKAFTKS 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKKWQD+LG+K+I +D +KM +YC VIRVIAHT
Sbjct: 121 SKKWQDELGRKSIEKDFKKMIRYCSVIRVIAHT--------------------------- 153
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
QMKLLK+RQKKAH+MEIQ+NGGS+ DK+ WAR+HLE+PIP+ VFAQDEMI
Sbjct: 154 ---------QMKLLKQRQKKAHIMEIQVNGGSIEDKVNWAREHLEKPIPIDSVFAQDEMI 204
Query: 291 DCIGVTKGKGFKG 303
DCIGVTKGKG+KG
Sbjct: 205 DCIGVTKGKGYKG 217
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGGS+ DK+ WAR+HLE+PIP+ VFAQDEMIDCIGVTKGKG
Sbjct: 155 MKLLKQRQKKAHIMEIQVNGGSIEDKVNWAREHLEKPIPIDSVFAQDEMIDCIGVTKGKG 214
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 215 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 274
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 275 GQGIHTKDGKV 285
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/162 (68%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 208 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 266
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 267 -MNKKIYRIGQGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFIMIKGCCM 325
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L A K R
Sbjct: 326 GPKKRVITLRKS--LRVHTKRAALEKINLKFIDTASKFGHGR 365
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGGS+ DK+ WAR+HLE
Sbjct: 133 IEKDFKKMIRYCSV---IRVIAHTQMKLLKQRQKKAHIMEIQVNGGSIEDKVNWAREHLE 189
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIP+ VFAQDEMIDCIGVTKGKG+K
Sbjct: 190 KPIPIDSVFAQDEMIDCIGVTKGKGYK 216
>gi|52741|emb|CAA68370.1| J1 protein [Mus musculus]
gi|226725|prf||1604248A J1 protein
Length = 403
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/131 (79%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV FTVARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV FTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|255308899|ref|NP_038790.2| 60S ribosomal protein L3 [Mus musculus]
gi|341942150|sp|P27659.3|RL3_MOUSE RecName: Full=60S ribosomal protein L3; AltName: Full=J1 protein
gi|16307136|gb|AAH09655.1| Ribosomal protein L3 [Mus musculus]
gi|26354122|dbj|BAC40691.1| unnamed protein product [Mus musculus]
gi|53237049|gb|AAH83134.1| Ribosomal protein L3 [Mus musculus]
gi|62825867|gb|AAH94059.1| Ribosomal protein L3 [Mus musculus]
gi|74138821|dbj|BAE27217.1| unnamed protein product [Mus musculus]
gi|74139413|dbj|BAE40848.1| unnamed protein product [Mus musculus]
gi|74141867|dbj|BAE41003.1| unnamed protein product [Mus musculus]
gi|74142025|dbj|BAE41075.1| unnamed protein product [Mus musculus]
gi|74146286|dbj|BAE28917.1| unnamed protein product [Mus musculus]
gi|74151280|dbj|BAE38773.1| unnamed protein product [Mus musculus]
gi|74184852|dbj|BAE39049.1| unnamed protein product [Mus musculus]
gi|74190533|dbj|BAE25922.1| unnamed protein product [Mus musculus]
gi|74195956|dbj|BAE30536.1| unnamed protein product [Mus musculus]
gi|74198689|dbj|BAE39818.1| unnamed protein product [Mus musculus]
gi|74201222|dbj|BAE26078.1| unnamed protein product [Mus musculus]
gi|74204394|dbj|BAE39950.1| unnamed protein product [Mus musculus]
gi|74207543|dbj|BAE40022.1| unnamed protein product [Mus musculus]
gi|74207577|dbj|BAE40037.1| unnamed protein product [Mus musculus]
gi|74207702|dbj|BAE40095.1| unnamed protein product [Mus musculus]
gi|74207706|dbj|BAE40097.1| unnamed protein product [Mus musculus]
gi|74212023|dbj|BAE40178.1| unnamed protein product [Mus musculus]
gi|74220011|dbj|BAE40585.1| unnamed protein product [Mus musculus]
gi|74221090|dbj|BAE42051.1| unnamed protein product [Mus musculus]
gi|148672669|gb|EDL04616.1| mCG11520, isoform CRA_b [Mus musculus]
gi|187956900|gb|AAI58040.1| Ribosomal protein L3 [Mus musculus]
Length = 403
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|74191638|dbj|BAE30390.1| unnamed protein product [Mus musculus]
gi|74198856|dbj|BAE30653.1| unnamed protein product [Mus musculus]
Length = 403
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|301757551|ref|XP_002914602.1| PREDICTED: 60S ribosomal protein L3-like [Ailuropoda melanoleuca]
Length = 403
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKV 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKVGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|225706512|gb|ACO09102.1| 60S ribosomal protein L3 [Osmerus mordax]
Length = 403
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM++VGV+GYVETP GLRSFKT++AEH+S EC+RRFY+N
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMIVVGVVGYVETPRGLRSFKTIFAEHVSDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+V+R++AHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFASMKKYCQVVRILAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLME+QLNGGS+ADK+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKSHLMEVQLNGGSIADKVDWAREKLEQAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IGVTKG G+KG
Sbjct: 206 PIANVFTQDEMIDVIGVTKGHGYKG 230
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS+ADK+ WAR+ LEQ +P+ VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHLMEVQLNGGSIADKVDWAREKLEQAVPIANVFTQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTKDGK+
Sbjct: 288 GQGFHTKDGKL 298
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDL+ KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGFHTKDGKLVKNNASTEYDLSNKSINPLGGFVHYGEVTNDFVMLKGCVI 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQSSRRALEKIDLKF 367
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R++ +M+LL RQKK+HLME+QLNGGS+ADK+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVV--RILAHTQMRLLPLRQKKSHLMEVQLNGGSIADKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +P+ VF QDEMID IGVTKG G+K
Sbjct: 203 QAVPIANVFTQDEMIDVIGVTKGHGYK 229
>gi|356461025|ref|NP_001239088.1| 60S ribosomal protein L3 [Canis lupus familiaris]
Length = 403
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|395541568|ref|XP_003772714.1| PREDICTED: 60S ribosomal protein L3-like [Sarcophilus harrisii]
Length = 428
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/266 (65%), Positives = 205/266 (77%), Gaps = 36/266 (13%)
Query: 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREA 97
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDPTKP+HLTAF+GYKAGMTHIVRE
Sbjct: 26 GSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPTKPIHLTAFLGYKAGMTHIVREV 85
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
DRPGSK+NKKE+VEAVTI+ETPPMVIVG++GYV+TP GLRSFKT++AEH+S EC+RRFYK
Sbjct: 86 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYK 145
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
NW+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 146 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQ------------- 192
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
M+LL RQKK+HLMEIQ+NGGSV++K+ WAR+ LEQ
Sbjct: 193 -----------------------MRLLPLRQKKSHLMEIQVNGGSVSEKLDWAREKLEQQ 229
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PV VF QDEMID IGVTKGKG+KG
Sbjct: 230 VPVSTVFGQDEMIDVIGVTKGKGYKG 255
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGGSV++K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 193 MRLLPLRQKKSHLMEIQVNGGSVSEKLDWAREKLEQQVPVSTVFGQDEMIDVIGVTKGKG 252
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 253 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 312
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 313 GQGYQIKDGKL 323
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 246 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 304
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 305 -INKKIYKIGQGYQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVV 363
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ +++ ++++
Sbjct: 364 GTKKRVLTLRKSLLVQTKRRALEKIDLKF 392
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKK+HLMEIQ+NGGSV++K+ WAR+ LE
Sbjct: 170 QLEKDFNSMKKYCQ--VIRVIAHTQMRLLPLRQKKSHLMEIQVNGGSVSEKLDWAREKLE 227
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKGKG+K
Sbjct: 228 QQVPVSTVFGQDEMIDVIGVTKGKGYK 254
>gi|327239268|gb|AEA39501.1| ribosomal protein L3 [Ailuropoda melanoleuca]
gi|327239370|gb|AEA39552.1| ribosomal protein L3 [Ailuropoda melanoleuca]
Length = 403
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKV 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKVGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|332858660|ref|XP_001150138.2| PREDICTED: 60S ribosomal protein L3-like isoform 1 [Pan
troglodytes]
Length = 395
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VI VIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIHVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAKKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAKKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +Q+ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKQRALEKIDLKF 367
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C VI +M+LL RQKKAHLMEIQ+NGG+VA K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--HVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAKKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|281351162|gb|EFB26746.1| hypothetical protein PANDA_002530 [Ailuropoda melanoleuca]
Length = 403
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKV 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKVGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|7159574|emb|CAB76199.1| ribosomal protein L3 [Bos taurus]
Length = 403
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHT
Sbjct: 122 WHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 114/160 (71%), Gaps = 9/160 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
KKRV+TLRK L++ K+ L EI L K R
Sbjct: 341 KKRVLTLRKSLLVQ--TKRRALEEIDLKFIDTTSKFGHGR 378
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSQVFGQDEMIDVIGVTKGKGYK 229
>gi|115725235|ref|XP_791350.2| PREDICTED: 60S ribosomal protein L3-like [Strongylocentrotus
purpuratus]
Length = 404
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGK K FPKDD +KPVHLT F+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKAKAFPKDDKSKPVHLTCFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAV+ILETPPM+IVG++GY+ETP GLR+ KTVWAEHLS EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVSILETPPMIIVGLVGYIETPSGLRALKTVWAEHLSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK+SKKW D++GKK I +DL M KYC VIRVIAHT
Sbjct: 122 WYRSKKKAFTKSSKKWADEMGKKEIEKDLNIMKKYCTVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKL+ +RQKKAH+MEIQLNGGS+ DKI WAR+ LE+ I
Sbjct: 167 ---------------------QMKLMNQRQKKAHVMEIQLNGGSIGDKIEWARERLEKNI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +VF QDE+ID IGVTKG GFKG
Sbjct: 206 PVSEVFGQDELIDIIGVTKGHGFKG 230
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 113/131 (86%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKL+ +RQKKAH+MEIQLNGGS+ DKI WAR+ LE+ IPV +VF QDE+ID IGVTKG G
Sbjct: 168 MKLMNQRQKKAHVMEIQLNGGSIGDKIEWARERLEKNIPVSEVFGQDELIDIIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRW TKKLPRKTHKGLRKVACIGAWHP+RV + VARAGQKGYHHRTE+NKK+YR+
Sbjct: 228 FKGVTSRWGTKKLPRKTHKGLRKVACIGAWHPARVGYGVARAGQKGYHHRTEINKKVYRV 287
Query: 428 GAGIHTKDGKV 438
G G H K+
Sbjct: 288 GKGYHLDGAKL 298
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 107/147 (72%), Gaps = 9/147 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRW TKKLPRKTHKGLRKVACIGAWHP+RV + VARAGQKGYHHRTE+
Sbjct: 221 GVTKGHGFKGVTSRWGTKKLPRKTHKGLRKVACIGAWHPARVGYGVARAGQKGYHHRTEI 280
Query: 490 ----FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
+ K Y + ++KNN T D+T+KSI PMGGFPHYGEV NDFLMIKGC +GP
Sbjct: 281 NKKVYRVGKGYHLDGAKLVKNNGGTIQDITDKSINPMGGFPHYGEVKNDFLMIKGCVVGP 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L+ K+ L +I L
Sbjct: 341 KKRVLTLRKSLLV--HTKRVALEKITL 365
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ D ++K C RVI +MKL+ +RQKKAH+MEIQLNGGS+ DKI WAR+ LE
Sbjct: 145 EIEKDLNIMKKYCT--VIRVIAHTQMKLMNQRQKKAHVMEIQLNGGSIGDKIEWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ IPV +VF QDE+ID IGVTKG GFK
Sbjct: 203 KNIPVSEVFGQDELIDIIGVTKGHGFK 229
>gi|347964|gb|AAA91344.1| TARBP-b, partial [Homo sapiens]
Length = 277
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR++RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRTSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 90/110 (81%), Positives = 100/110 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHR 417
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP RV F+VARAGQKGYHHR
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPVRVAFSVARAGQKGYHHR 277
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 48/57 (84%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHR 486
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP RV F+VARAGQKGYHHR
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPVRVAFSVARAGQKGYHHR 277
>gi|57525400|ref|NP_001006241.1| 60S ribosomal protein L3 [Gallus gallus]
gi|53132964|emb|CAG31951.1| hypothetical protein RCJMB04_14e22 [Gallus gallus]
Length = 403
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYV+TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRV+AHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEEGKKQLEKDFNSMKKYCQVIRVMAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSSVFGQDEMIDVIGVTKGKGYKG 230
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVPVSSVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYQIKDGKL 298
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ +++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVMAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSSVFGQDEMIDVIGVTKGKGYK 229
>gi|224095133|ref|XP_002198398.1| PREDICTED: 60S ribosomal protein L3-like [Taeniopygia guttata]
Length = 403
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYV+TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIIETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRV+AHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFNSMKKYCQVIRVMAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKGKG+KG
Sbjct: 206 PVATVFGQDEMIDVIGVTKGKGYKG 230
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVPVATVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYQIKDGKL 298
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMVKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ +++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVMAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVATVFGQDEMIDVIGVTKGKGYK 229
>gi|27807287|ref|NP_777140.1| 60S ribosomal protein L3 [Bos taurus]
gi|730564|sp|P39872.2|RL3_BOVIN RecName: Full=60S ribosomal protein L3
gi|187609300|pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
gi|450499|emb|CAA82654.1| ribosomal protein L3 [Bos taurus]
gi|59858389|gb|AAX09029.1| ribosomal protein L3 [Bos taurus]
gi|74267942|gb|AAI02254.1| Ribosomal protein L3 [Bos taurus]
gi|296486985|tpg|DAA29098.1| TPA: 60S ribosomal protein L3 [Bos taurus]
gi|1092507|prf||2024221A ribosomal protein L3
Length = 403
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHT
Sbjct: 122 WHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKG 230
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSQVFGQDEMIDVIGVTKGKGYK 229
>gi|149743311|ref|XP_001501957.1| PREDICTED: 60S ribosomal protein L3 [Equus caballus]
Length = 403
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ G+K + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGRKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKVDLKF 367
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|326911917|ref|XP_003202302.1| PREDICTED: 60S ribosomal protein L3-like [Meleagris gallopavo]
Length = 403
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYV+TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRV+AHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDEGKKQLEKDFNSMKKYCQVIRVMAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSSVFGQDEMIDVIGVTKGKGYKG 230
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVPVSSVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYQIKDGKL 298
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ +++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVMAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSSVFGQDEMIDVIGVTKGKGYK 229
>gi|426225796|ref|XP_004007048.1| PREDICTED: 60S ribosomal protein L3 [Ovis aries]
Length = 403
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDVDGKKQLERDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSQVFGQDEMIDVIGVTKGKGYK 229
>gi|440903024|gb|ELR53738.1| 60S ribosomal protein L3, partial [Bos grunniens mutus]
Length = 402
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 1 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 61 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHT
Sbjct: 121 WHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +
Sbjct: 166 ---------------------QMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 205 PVSQVFGQDEMIDVIGVTKGKGYKG 229
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 167 MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 226
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+ V F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPAWVAFSVARAGQKGYHHRTEINKKIYKI 286
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 287 GQGYLIKDGKL 297
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+ V F+VARAGQKGYHHRTE
Sbjct: 220 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPAWVAFSVARAGQKGYHHRTEI 279
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 280 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 339
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 340 KKRVLTLRKSLLVQTKRRALEKIDLKF 366
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LE
Sbjct: 144 QLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 201
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 202 QQVPVSQVFGQDEMIDVIGVTKGKGYK 228
>gi|324517742|gb|ADY46908.1| 60S ribosomal protein L3, partial [Ascaris suum]
Length = 402
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGF PKKRS RHRGKVK FPKDDPTKP+HLTAFIG+KAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSMGFTPKKRSRRHRGKVKAFPKDDPTKPIHLTAFIGFKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTILETPPMVIVG++GY++TP G R FKTVWAEHLS++CRRRFYKN
Sbjct: 62 KPGSKVNKKEVVEAVTILETPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+ S++KAF K +KKWQD+ G+K+I DL KM KYC IRVIAHT
Sbjct: 122 WHTSKKKAFQKHAKKWQDEDGRKSIESDLNKMKKYCSKIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK++K R+KKAH+MEIQ+NGG+V +K+ WA++HLE+ +
Sbjct: 167 ---------------------QMKVMKHREKKAHIMEIQVNGGTVPEKVDWAKEHLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VFAQDEMIDCIGVTKGKGFKG
Sbjct: 206 AVDSVFAQDEMIDCIGVTKGKGFKG 230
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 119/130 (91%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK++K R+KKAH+MEIQ+NGG+V +K+ WA++HLE+ + V VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKVMKHREKKAHIMEIQVNGGTVPEKVDWAKEHLEKQVAVDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRL 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSCLTEEGK 297
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEV 280
Query: 489 ---LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
++ K L+ K N T+YD+TEKSI PMGGFPHYG VN DF+MI+GCC+G KKR
Sbjct: 281 NKKIYRLGKSCLTEEGKRNGGTEYDITEKSINPMGGFPHYGLVNQDFVMIRGCCVGSKKR 340
Query: 546 VITLRKMKLLKKRQ 559
ITLRK +++ ++
Sbjct: 341 PITLRKSLIVQTKR 354
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ +D +K C K RVI +MK++K R+KKAH+MEIQ+NGG+V +K+ WA++HLE+
Sbjct: 146 IESDLNKMKKYC--SKIRVIAHTQMKVMKHREKKAHIMEIQVNGGTVPEKVDWAKEHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ V VFAQDEMIDCIGVTKGKGFK
Sbjct: 204 QVAVDSVFAQDEMIDCIGVTKGKGFK 229
>gi|74186276|dbj|BAE42921.1| unnamed protein product [Mus musculus]
Length = 403
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 204/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGM HIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMIHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|74185237|dbj|BAE30097.1| unnamed protein product [Mus musculus]
Length = 403
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 204/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTK KG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKDKGYKG 230
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTK KG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKDKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKDKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTK KG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKDKGYK 229
>gi|405959119|gb|EKC25184.1| 60S ribosomal protein L3, partial [Crassostrea gigas]
Length = 484
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 176/267 (65%), Positives = 205/267 (76%), Gaps = 36/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
+ SHRKFSAPRHGS F PKKRS RHRGK K FPKDD +KP HLTAF+GYKAGMTHIVRE
Sbjct: 83 RQSHRKFSAPRHGSKAFLPKKRSRRHRGKCKSFPKDDKSKPCHLTAFLGYKAGMTHIVRE 142
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
DRPGSK NKKEIVEAVTILETPPM+IVGV+GY+ETP GLR+FKT++AEHLS++CRRRFY
Sbjct: 143 VDRPGSKSNKKEIVEAVTILETPPMMIVGVVGYIETPKGLRAFKTIFAEHLSEDCRRRFY 202
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWY++++KA+TK SKKWQD+ GKK I +D KM KYCKVIRVIAHT
Sbjct: 203 KNWYRAKKKAYTKYSKKWQDEDGKKEIERDFAKMKKYCKVIRVIAHT------------- 249
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
QMKLLKKRQKKAH+ME+Q+NGG+V K+ WAR+ LE+
Sbjct: 250 -----------------------QMKLLKKRQKKAHIMEVQVNGGTVNQKVDWAREKLEK 286
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+P+ QVFAQDE IDCIGVT+G+GFKG
Sbjct: 287 AVPIEQVFAQDENIDCIGVTRGRGFKG 313
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLKKRQKKAH+ME+Q+NGG+V K+ WAR+ LE+ +P+ QVFAQDE IDCIGVT+G+G
Sbjct: 251 MKLLKKRQKKAHIMEVQVNGGTVNQKVDWAREKLEKAVPIEQVFAQDENIDCIGVTRGRG 310
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWH KKLPRKTHKGLRKVACIGAWHPSRVQF+VARAGQKGYHHRTE+NKKIYR+
Sbjct: 311 FKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVQFSVARAGQKGYHHRTEINKKIYRI 370
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 371 GKGIHTKDGKV 381
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 109/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWH KKLPRKTHKGLRKVACIGAWHPSRVQF+VARAGQKGYHHRTE
Sbjct: 304 GVTRGRGFKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVQFSVARAGQKGYHHRTE- 362
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNN +TDYD +K+ITPMGGFPHYGEVN DF+MIKGCCM
Sbjct: 363 -INKKIYRIGKGIHTKDGKVIKNNGATDYDPADKTITPMGGFPHYGEVNQDFVMIKGCCM 421
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRVITLRK L R+K + ++
Sbjct: 422 GSKKRVITLRKSLLATFRKKAMEKISLKF 450
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ DF +K C RVI +MKLLKKRQKKAH+ME+Q+NGG+V K+ WAR+ LE
Sbjct: 228 EIERDFAKMKKYCKVI--RVIAHTQMKLLKKRQKKAHIMEVQVNGGTVNQKVDWAREKLE 285
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +P+ QVFAQDE IDCIGVT+G+GFK
Sbjct: 286 KAVPIEQVFAQDENIDCIGVTRGRGFK 312
>gi|297296032|ref|XP_001082799.2| PREDICTED: 60S ribosomal protein L3-like isoform 1 [Macaca mulatta]
Length = 403
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRF KN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFCKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHT
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAHL+EIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKAHLVEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHL+EIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLVEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHL+EIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLVEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|344296357|ref|XP_003419875.1| PREDICTED: 60S ribosomal protein L3-like [Loxodonta africana]
Length = 566
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 176/271 (64%), Positives = 206/271 (76%), Gaps = 36/271 (13%)
Query: 33 HRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTH 92
H SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTH
Sbjct: 159 HPATLPSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDTSKPVHLTAFLGYKAGMTH 218
Query: 93 IVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECR 152
IVRE DRPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+
Sbjct: 219 IVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECK 278
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
RRFYKNW+KS++KAFTK KKWQD GKK + +D M +YC+VIRVIAHT
Sbjct: 279 RRFYKNWHKSKKKAFTKYCKKWQDDDGKKQLEKDFSSMKRYCQVIRVIAHT--------- 329
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
QM+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+
Sbjct: 330 ---------------------------QMRLLPLRQKKAHLMEIQVNGGTVAEKVDWARE 362
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 363 RLEQQVPVSQVFGQDEMIDVIGVTKGKGYKG 393
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 331 MRLLPLRQKKAHLMEIQVNGGTVAEKVDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 390
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 391 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKV 450
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 451 GQGYLIKDGKL 461
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 384 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 443
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 444 NKKIYKVGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 503
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 504 KKRVLTLRKSLLVQTKRRALEKIDLKF 530
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 308 QLEKDFSSMKRYCQ--VIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKVDWARERLE 365
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 366 QQVPVSQVFGQDEMIDVIGVTKGKGYK 392
>gi|319079393|ref|NP_001187033.1| ribosomal protein L3 [Ictalurus punctatus]
gi|15293867|gb|AAK95126.1|AF401554_1 ribosomal protein L3 [Ictalurus punctatus]
Length = 402
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 204/265 (76%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR+A RGKVK FPKDDPTKPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRAA-SRGKVKSFPKDDPTKPVHLTAFLGYKAGMTHIVREVD 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM++VG++GYVETP GLRSFKTV+AEH+S ECRRRFYKN
Sbjct: 61 RPGSKVNKKEVVEAVTIVETPPMMVVGIVGYVETPRGLRSFKTVFAEHISDECRRRFYKN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK SKKWQD GKK + +D M KYCKVIR+IAHT
Sbjct: 121 WYKSKKKAFTKYSKKWQDDEGKKQLEKDFSSMKKYCKVIRIIAHT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLMEIQLNGG++++K+ WAR+ LEQ +
Sbjct: 166 ---------------------QMRLLPLRQKKSHLMEIQLNGGTISEKVDWAREKLEQAV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF+QDEMID IGVTKG G+KG
Sbjct: 205 PINNVFSQDEMIDVIGVTKGHGYKG 229
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 119/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQLNGG++++K+ WAR+ LEQ +P+ VF+QDEMID IGVTKG G
Sbjct: 167 MRLLPLRQKKSHLMEIQLNGGTISEKVDWAREKLEQAVPINNVFSQDEMIDVIGVTKGHG 226
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEVNKKIYKI 286
Query: 428 GAGIHTKDGKV 438
G G HTKDGKV
Sbjct: 287 GQGYHTKDGKV 297
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 111/147 (75%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 220 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEV 279
Query: 489 ---LFLCKKKYLS---MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + Y + VIKNNASTDYDL+ KSI P+GGF HYGEV NDFLM+KGC +G
Sbjct: 280 NKKIYKIGQGYHTKDGKVIKNNASTDYDLSNKSINPLGGFVHYGEVTNDFLMLKGCVVGT 339
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ ++ ++++
Sbjct: 340 KKRVLTLRKSLLVQTSRRALERIDLKF 366
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLMEIQLNGG++++K+ WAR+ LE
Sbjct: 144 QLEKDFSSMKKYC--KVIRIIAHTQMRLLPLRQKKSHLMEIQLNGGTISEKVDWAREKLE 201
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +P+ VF+QDEMID IGVTKG G+K
Sbjct: 202 QAVPINNVFSQDEMIDVIGVTKGHGYK 228
>gi|126339540|ref|XP_001366844.1| PREDICTED: 60S ribosomal protein L3-like [Monodelphis domestica]
Length = 476
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 173/265 (65%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 75 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 134
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYV+TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 135 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 194
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 195 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQ-------------- 240
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQ+NGG+V++K+ WAR+ LEQ +
Sbjct: 241 ----------------------MRLLPLRQKKSHLMEIQVNGGNVSEKLDWAREKLEQQV 278
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKGKG+KG
Sbjct: 279 PVSTVFGQDEMIDVIGVTKGKGYKG 303
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG+V++K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 241 MRLLPLRQKKSHLMEIQVNGGNVSEKLDWAREKLEQQVPVSTVFGQDEMIDVIGVTKGKG 300
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 301 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 360
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 361 GQGYQIKDGKL 371
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 294 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 352
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 353 -INKKIYKIGQGYQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVV 411
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ +++ ++++
Sbjct: 412 GTKKRVLTLRKSLLVQTKRRALEKIDLKF 440
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKK+HLMEIQ+NGG+V++K+ WAR+ LE
Sbjct: 218 QLEKDFNSMKKYCQ--VIRVIAHTQMRLLPLRQKKSHLMEIQVNGGNVSEKLDWAREKLE 275
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKGKG+K
Sbjct: 276 QQVPVSTVFGQDEMIDVIGVTKGKGYK 302
>gi|1350745|sp|P49149.2|RL3_TOXCA RecName: Full=60S ribosomal protein L3
gi|596082|gb|AAA92285.1| ribosomal protein L3 [Toxocara canis]
Length = 402
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGF PKKRS RHRGKVK FPKDDPTKP+HLTAFI +KAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTI E PPMVIVG++GY++TP G R FKTVWAEHLS++CR RFYKN
Sbjct: 62 KPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+ S++KAF K +KKWQD+ G+K+I DL KM KYC IRVIAHT
Sbjct: 122 WHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK++K R+KKAH+MEIQ+NGG+VA+K+ WAR+HLE+ +
Sbjct: 167 ---------------------QMKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMIDCIGVTKGKGFKG
Sbjct: 206 PVDSVFAQDEMIDCIGVTKGKGFKG 230
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/130 (81%), Positives = 121/130 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK++K R+KKAH+MEIQ+NGG+VA+K+ WAR+HLE+ +PV VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRL 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSCLTEEGK 297
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEV 280
Query: 489 ---LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
++ K L+ K N TDYD+TEKS+ PMGGFPHYG VN DF+MI+GCC+G KKR
Sbjct: 281 NKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKR 340
Query: 546 VITLRKMKLLKKRQ 559
ITLRK +++ ++
Sbjct: 341 PITLRKSLIVQTKR 354
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D +K C K RVI +MK++K R+KKAH+MEIQ+NGG+VA+K+ WAR+HLE+
Sbjct: 146 IEADLNKMKKYC--SKIRVIAHTQMKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PV VFAQDEMIDCIGVTKGKGFK
Sbjct: 204 QVPVDSVFAQDEMIDCIGVTKGKGFK 229
>gi|359745329|gb|AEV57601.1| 60S ribosomal protein L3 [Muraenesox cinereus]
Length = 403
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FP+DD TKPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPRDDATKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM++VGV+GYV+TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMIVVGVVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+V+R+IAHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFAAMKKYCQVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLME+QLNGGS+ADK+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKSHLMEVQLNGGSIADKVDWAREKLEQAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IGVTKG G+KG
Sbjct: 206 PITNVFTQDEMIDVIGVTKGHGYKG 230
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS+ADK+ WAR+ LEQ +P+ VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHLMEVQLNGGSIADKVDWAREKLEQAVPITNVFTQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTKDGKV
Sbjct: 288 GQGYHTKDGKV 298
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y V+KNNA+T+YDL+ KSITP+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYHTKDGKVVKNNAATEYDLSNKSITPLGGFVHYGEVRNDFVMLKGCIV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ + ++
Sbjct: 339 GVKKRVLTLRKSLLVQTSRRALEKINLKF 367
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLME+QLNGGS+ADK+ WAR+ LE
Sbjct: 145 QLEKDFAAMKKYCQVV--RIIAHTQMRLLPLRQKKSHLMEVQLNGGSIADKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +P+ VF QDEMID IGVTKG G+K
Sbjct: 203 QAVPITNVFTQDEMIDVIGVTKGHGYK 229
>gi|47217938|emb|CAG02221.1| unnamed protein product [Tetraodon nigroviridis]
Length = 402
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 172/265 (64%), Positives = 201/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGK K FPKDDP+KPVH+TAF+GYKAGMTHIVRE D
Sbjct: 1 SHRKFSAPRHGSLGFLPRKRSRRHRGKAKSFPKDDPSKPVHMTAFLGYKAGMTHIVREVD 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM+++GV+GYV TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 61 RPGSKVNKKEVVEAVTIVETPPMIVIGVVGYVNTPSGLRSFKTIFAEHISDECKRRFYKN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+VIRVI HT
Sbjct: 121 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFALMKKYCQVIRVITHT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLME+QLNGG++ADK+ WAR+ LEQ I
Sbjct: 166 ---------------------QMRLLPIRQKKSHLMEVQLNGGTIADKVDWAREKLEQSI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMID IGVTKG G+KG
Sbjct: 205 PVNTVFAQDEMIDVIGVTKGHGYKG 229
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/131 (80%), Positives = 119/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGG++ADK+ WAR+ LEQ IPV VFAQDEMID IGVTKG G
Sbjct: 167 MRLLPIRQKKSHLMEVQLNGGTIADKVDWAREKLEQSIPVNTVFAQDEMIDVIGVTKGHG 226
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 286
Query: 428 GAGIHTKDGKV 438
G G HTKDGKV
Sbjct: 287 GQGYHTKDGKV 297
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 220 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 278
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y V+KNNASTDYDL+ KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 279 -INKKIYKIGQGYHTKDGKVVKNNASTDYDLSNKSINPLGGFVHYGEVTNDFVMLKGCVV 337
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 338 GTKKRVLTLRKSLLVQTSRRAQEKIDLKF 366
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF ++K C RVIT +M+LL RQKK+HLME+QLNGG++ADK+ WAR+ LE
Sbjct: 144 QLEKDFALMKKYCQVI--RVITHTQMRLLPIRQKKSHLMEVQLNGGTIADKVDWAREKLE 201
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IPV VFAQDEMID IGVTKG G+K
Sbjct: 202 QSIPVNTVFAQDEMIDVIGVTKGHGYK 228
>gi|154426164|gb|AAI51556.1| Ribosomal protein L3 [Bos taurus]
Length = 403
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 204/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIV E D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVMEVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHT
Sbjct: 122 WHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKG 230
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSQVFGQDEMIDVIGVTKGKGYK 229
>gi|402854487|ref|XP_003891900.1| PREDICTED: 60S ribosomal protein L3-like [Papio anubis]
Length = 403
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHI+RE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIMREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VI VIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIHVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+N G+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNRGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+N G+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNRGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GL KVACIGAWHP+ V F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLHKVACIGAWHPAHVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 111/147 (75%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GL KVACIGAWHP+ V F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLHKVACIGAWHPAHVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C VI +M+LL RQKKAHLMEIQ+N G+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--HVIAHTQMRLLPLRQKKAHLMEIQVNRGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|432867474|ref|XP_004071207.1| PREDICTED: 60S ribosomal protein L3-like [Oryzias latipes]
Length = 403
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 172/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGK K FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKCKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VGV GYV TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGVTGYVSTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WYKSKKKAFTKYCKKWQDEEGKKQLEKDFASMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL +QKK+HLME+QLNGG+++DK+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLKQKKSHLMEVQLNGGTISDKVDWAREKLEQAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKG G+KG
Sbjct: 206 PVNTVFTQDEMIDVIGVTKGHGYKG 230
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL +QKK+HLME+QLNGG+++DK+ WAR+ LEQ +PV VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLKQKKSHLMEVQLNGGTISDKVDWAREKLEQAVPVNTVFTQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTKDGKV
Sbjct: 288 GQGYHTKDGKV 298
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y V+KNNAST+YDL+ KSI P+GGF HYG+V NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYHTKDGKVVKNNASTEYDLSNKSINPLGGFVHYGQVANDFVMVKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTSRRALEKIDLKF 367
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL +QKK+HLME+QLNGG+++DK+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVI--RVIAHTQMRLLPLKQKKSHLMEVQLNGGTISDKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKG G+K
Sbjct: 203 QAVPVNTVFTQDEMIDVIGVTKGHGYK 229
>gi|337580|gb|AAA60291.1| ribosomal protein L3, partial [Homo sapiens]
Length = 398
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 203/261 (77%), Gaps = 36/261 (13%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
FSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE DRPGS
Sbjct: 1 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 60
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKS 162
K+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKNW+KS
Sbjct: 61 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 120
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 121 KKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ------------------ 162
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV Q
Sbjct: 163 ------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQ 204
Query: 283 VFAQDEMIDCIGVTKGKGFKG 303
VF QDEMID IGVTKGKG+KG
Sbjct: 205 VFGQDEMIDVIGVTKGKGYKG 225
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 163 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 222
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 223 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 282
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 283 GQGYLIKDGKL 293
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 216 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 275
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 276 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 335
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 336 KKRVLTLRKSLLVQTKRRALEKIDLKF 362
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 140 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 197
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 198 QQVPVNQVFGQDEMIDVIGVTKGKGYK 224
>gi|170041842|ref|XP_001848658.1| 60S ribosomal protein L3 [Culex quinquefasciatus]
gi|167865417|gb|EDS28800.1| 60S ribosomal protein L3 [Culex quinquefasciatus]
Length = 452
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 168/267 (62%), Positives = 205/267 (76%), Gaps = 36/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
K SHRKFSAPRHGSM FYPKKR++RH+G++K FPKDDPTKPVHLTA++ YKAGMTHIVRE
Sbjct: 37 KMSHRKFSAPRHGSMAFYPKKRASRHQGRIKAFPKDDPTKPVHLTAYLAYKAGMTHIVRE 96
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
ADRPGSKINKKE+VEAVTILETPP+VIVG +GY+ETP G R+ VWA+HLS+ECRRRFY
Sbjct: 97 ADRPGSKINKKEVVEAVTILETPPIVIVGAVGYIETPFGPRALCNVWAQHLSEECRRRFY 156
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNW+ S++KAFTKASKKW D LGKK+I + +KM +YCK IRVIAH+
Sbjct: 157 KNWHVSKKKAFTKASKKWTDDLGKKSIEDNFKKMIRYCKFIRVIAHS------------- 203
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
Q++L+K+ QKKAH++EIQLNGG++ DK+ W ++HLE+
Sbjct: 204 -----------------------QIRLIKQGQKKAHIIEIQLNGGTIEDKVNWVKEHLEK 240
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
P+PV VF QDEM+DC+ VTKGKGFKG
Sbjct: 241 PVPVADVFGQDEMVDCVAVTKGKGFKG 267
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 109/146 (74%), Positives = 126/146 (86%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+ QKKAH++EIQLNGG++ DK+ W ++HLE+P+PV VF QDEM+DC+ VTKGKG
Sbjct: 205 IRLIKQGQKKAHIIEIQLNGGTIEDKVNWVKEHLEKPVPVADVFGQDEMVDCVAVTKGKG 264
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 265 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGYHHRTEINKKIYRI 324
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKT 453
GAGIHTKDGKV S L KT
Sbjct: 325 GAGIHTKDGKVVKNSAATEYDLTDKT 350
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/152 (64%), Positives = 114/152 (75%), Gaps = 13/152 (8%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE + KK Y
Sbjct: 268 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGYHHRTE--INKKIYRIG 325
Query: 498 -------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
V+KN+A+T+YDLT+K+ITPMGGFP YGE+N DFLMIKGCC+G K+R+ITLR
Sbjct: 326 AGIHTKDGKVVKNSAATEYDLTDKTITPMGGFPFYGEINQDFLMIKGCCIGAKRRIITLR 385
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
K L K+A L +I+L + K+ R
Sbjct: 386 KSLLT--HTKRASLEQIKLKFIDTSSKMGHGR 415
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 58/69 (84%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +++L+K+ QKKAH++EIQLNGG++ DK+ W ++HLE+P+PV VF QDEM+DC+
Sbjct: 198 RVIAHSQIRLIKQGQKKAHIIEIQLNGGTIEDKVNWVKEHLEKPVPVADVFGQDEMVDCV 257
Query: 605 GVTKGKGFK 613
VTKGKGFK
Sbjct: 258 AVTKGKGFK 266
>gi|363894901|gb|AEW42982.1| putative 60S ribosomal protein L3 [Haliotis diversicolor]
Length = 400
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 199/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS GF PKKRS R RGKVK FPKDD +KPVHLT F+ YKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSKGFLPKKRSRRQRGKVKSFPKDDKSKPVHLTTFLTYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK NKKE+VEAVTILE PPMVI GV GY+ETPHGLR+ KT+WAEHLS+ECRRRFYKN
Sbjct: 62 RPGSKTNKKEVVEAVTILEAPPMVIAGVTGYIETPHGLRTLKTIWAEHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S++KAFTK++KKWQD+ G K I +D K+ KYC +IRVIAHTQ
Sbjct: 122 WSRSKKKAFTKSNKKWQDEAGMKEIDRDFAKLKKYCTIIRVIAHTQT------------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KLL+KRQKKAHLMEIQLNGGS+ADK+ WAR+HLE+P+
Sbjct: 169 -----------------------KLLRKRQKKAHLMEIQLNGGSIADKVDWAREHLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDE+ID IGVTKG+G KG
Sbjct: 206 PVSSVFEQDEVIDVIGVTKGRGVKG 230
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 122/130 (93%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KLL+KRQKKAHLMEIQLNGGS+ADK+ WAR+HLE+P+PV VF QDE+ID IGVTKG+G
Sbjct: 169 KLLRKRQKKAHLMEIQLNGGSIADKVDWAREHLEKPVPVSSVFEQDEVIDVIGVTKGRGV 228
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGVTSRWH KKLPRKTHKGLRKVACIGAWHPSRVQ+TVARAGQKGYHHRTE NKKIYR+G
Sbjct: 229 KGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVQYTVARAGQKGYHHRTERNKKIYRLG 288
Query: 429 AGIHTKDGKV 438
AGIHTKDGKV
Sbjct: 289 AGIHTKDGKV 298
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/131 (71%), Positives = 103/131 (78%), Gaps = 11/131 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWH KKLPRKTHKGLRKVACIGAWHPSRVQ+TVARAGQKGYHHRTE
Sbjct: 221 GVTKGRGVKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVQYTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
KK Y VIKNNA+TD+D TEK+ITPMGGFPHYGEV NDF+M+KGCC+
Sbjct: 280 -RNKKIYRLGAGIHTKDGKVIKNNAATDFDPTEKTITPMGGFPHYGEVRNDFVMLKGCCV 338
Query: 541 GPKKRVITLRK 551
GPKKR +TLRK
Sbjct: 339 GPKKRPLTLRK 349
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E++ DF +K C RVI + KLL+KRQKKAHLMEIQLNGGS+ADK+ WAR+HLE
Sbjct: 145 EIDRDFAKLKKYCTII--RVIAHTQTKLLRKRQKKAHLMEIQLNGGSIADKVDWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAK 624
+P+PV VF QDE+ID IGVTKG+G K V S C K
Sbjct: 203 KPVPVSSVFEQDEVIDVIGVTKGRGVK-GVTSRWHCKK 239
>gi|296237103|ref|XP_002763611.1| PREDICTED: 60S ribosomal protein L3-like isoform 1 [Callithrix
jacchus]
Length = 403
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 173/265 (65%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR++RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPQKRNSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVSEKLDWARKRLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGV+K KG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVSKRKGYKG 230
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LEQ +PV QVF QDEMID IGV+K KG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVSEKLDWARKRLEQQVPVNQVFGQDEMIDVIGVSKRKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/134 (66%), Positives = 107/134 (79%), Gaps = 7/134 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ + G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVSKRKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLK 556
KKRV+TLRK L++
Sbjct: 341 KKRVLTLRKSLLVQ 354
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+V++K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVSEKLDWARKRLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGV+K KG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVSKRKGYK 229
>gi|410903147|ref|XP_003965055.1| PREDICTED: 60S ribosomal protein L3-like [Takifugu rubripes]
Length = 403
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 169/265 (63%), Positives = 200/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGK K FPKDDP+KPVH+TAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKAKSFPKDDPSKPVHMTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV++GV+GYV TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVIGVVGYVNTPSGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+VIRVI HT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFNLMKKYCQVIRVITHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLME+QLNGG+++DK+ WAR+ LEQ I
Sbjct: 167 ---------------------QMRLLPIRQKKSHLMEVQLNGGTISDKVDWAREKLEQSI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IG+TKG G+KG
Sbjct: 206 PINTVFTQDEMIDVIGITKGHGYKG 230
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGG+++DK+ WAR+ LEQ IP+ VF QDEMID IG+TKG G
Sbjct: 168 MRLLPIRQKKSHLMEVQLNGGTISDKVDWAREKLEQSIPINTVFTQDEMIDVIGITKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTKDGK+
Sbjct: 288 GQGFHTKDGKL 298
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GITKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++K+NASTDYDL+ KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGFHTKDGKLVKSNASTDYDLSNKSINPLGGFVHYGEVTNDFVMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTSRRALEKIDLKF 367
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF ++K C RVIT +M+LL RQKK+HLME+QLNGG+++DK+ WAR+ LE
Sbjct: 145 QLEKDFNLMKKYCQVI--RVITHTQMRLLPIRQKKSHLMEVQLNGGTISDKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IP+ VF QDEMID IG+TKG G+K
Sbjct: 203 QSIPINTVFTQDEMIDVIGITKGHGYK 229
>gi|188572498|gb|ACD65155.1| putative 60S ribosomal protein RPL3 [Phoronis muelleri]
Length = 223
Score = 361 bits (926), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 174/258 (67%), Positives = 197/258 (76%), Gaps = 36/258 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+ F PKKRS RHRGK K FPKDD +KPVHLTAF+GYKAGM+HIVR+ D
Sbjct: 2 SHRKFSAPRHGSLAFLPKKRSVRHRGKCKAFPKDDSSKPVHLTAFLGYKAGMSHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK NKKE+VEAVTI+ETPPM+ VGV+GY+ETP GLR+FKTVWAEHLS+ECRRRFYKN
Sbjct: 62 RPGSKANKKEVVEAVTIVETPPMIAVGVVGYIETPKGLRTFKTVWAEHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKW+D GK+ I +DL KM KYCKV+RVIAHT
Sbjct: 122 WYKSKKKAFTKYGKKWKDDDGKQAIEKDLNKMKKYCKVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLLKKRQKKAH+MEIQLNGG+VA K+ WAR+HLEQ +
Sbjct: 167 ---------------------QMKLLKKRQKKAHIMEIQLNGGTVAQKVDWAREHLEQKL 205
Query: 279 PVGQVFAQDEMIDCIGVT 296
PV VFA DEMID IGVT
Sbjct: 206 PVKSVFAXDEMIDVIGVT 223
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 53/63 (84%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLLKKRQKKAH+MEIQLNGG+VA K+ WAR+HLEQ +PV VFA DEMID I
Sbjct: 161 RVIAHTQMKLLKKRQKKAHIMEIQLNGGTVAQKVDWAREHLEQKLPVKSVFAXDEMIDVI 220
Query: 605 GVT 607
GVT
Sbjct: 221 GVT 223
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 49/56 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVT 363
MKLLKKRQKKAH+MEIQLNGG+VA K+ WAR+HLEQ +PV VFA DEMID IGVT
Sbjct: 168 MKLLKKRQKKAHIMEIQLNGGTVAQKVDWAREHLEQKLPVKSVFAXDEMIDVIGVT 223
>gi|348510237|ref|XP_003442652.1| PREDICTED: 60S ribosomal protein L3 [Oreochromis niloticus]
Length = 403
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 201/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM++VGV+GYV TP GLRSFKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMIVVGVVGYVNTPRGLRSFKTVFAEHMSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD+ GKK + +D M KYC+VIRVI HT
Sbjct: 122 WYKSKKKAFTKYCKKWQDEEGKKQLEKDFAAMKKYCQVIRVICHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM++L RQKKAHLME+Q+NGG+++DK+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRMLPLRQKKAHLMEVQVNGGTISDKVDWAREKLEQAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID IGVTKG G+KG
Sbjct: 206 LVNNVFTQDEMIDIIGVTKGHGYKG 230
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M++L RQKKAHLME+Q+NGG+++DK+ WAR+ LEQ + V VF QDEMID IGVTKG G
Sbjct: 168 MRMLPLRQKKAHLMEVQVNGGTISDKVDWAREKLEQAVLVNNVFTQDEMIDIIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G H KDGK+
Sbjct: 288 GQGYHQKDGKL 298
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDL+ KSI PMGGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYHQKDGKLVKNNASTEYDLSNKSINPMGGFVHYGEVRNDFVMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTSRRAQEKIDLKF 367
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M++L RQKKAHLME+Q+NGG+++DK+ WAR+ LE
Sbjct: 145 QLEKDFAAMKKYCQVI--RVICHTQMRMLPLRQKKAHLMEVQVNGGTISDKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V VF QDEMID IGVTKG G+K
Sbjct: 203 QAVLVNNVFTQDEMIDIIGVTKGHGYK 229
>gi|355769998|gb|EHH62843.1| hypothetical protein EGM_19535, partial [Macaca fascicularis]
Length = 403
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+K S RHRGKVK F KDDP+KPVHLTAF+GYKAGM HIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKLSIRHRGKVKSFHKDDPSKPVHLTAFLGYKAGMAHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHT
Sbjct: 122 WHKSKKKAFTKHCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHH TE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHCTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHH TE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHCTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|392875086|gb|AFM86375.1| 60S ribosomal protein L3 [Callorhinchus milii]
gi|392876078|gb|AFM86871.1| 60S ribosomal protein L3 [Callorhinchus milii]
gi|392881180|gb|AFM89422.1| 60S ribosomal protein L3 [Callorhinchus milii]
Length = 403
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCRRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPMVIVG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVIETPPMVIVGLVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD+ GKK + +D M KYC+VIRV+AHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDEEGKKQLEKDFASMKKYCQVIRVLAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID IGVTKG GFKG
Sbjct: 206 AVNTVFGQDEMIDVIGVTKGHGFKG 230
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ + V VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQVAVNTVFGQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKK+YR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKVYRV 287
Query: 428 GAGIHTKDGKV 438
G G H K+GKV
Sbjct: 288 GMGYHNKEGKV 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 113/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKY-LSM--------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y + M V+KNNAST+YDLT+KSI P+GGFPHYGEV NDFLM+KGC +
Sbjct: 280 -INKKVYRVGMGYHNKEGKVVKNNASTEYDLTDKSINPLGGFPHYGEVTNDFLMMKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+ LRK L++ ++ ++++
Sbjct: 339 GTKKRVLALRKSLLVQSSRRALEKIDLKF 367
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVI--RVLAHTQMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V VF QDEMID IGVTKG GFK
Sbjct: 203 QQVAVNTVFGQDEMIDVIGVTKGHGFK 229
>gi|392878726|gb|AFM88195.1| 60S ribosomal protein L3 [Callorhinchus milii]
Length = 403
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCRRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPMVIVG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVIETPPMVIVGLVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD+ GKK + +D M KYC+VIRV+AHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDEEGKKQLEKDFASMKKYCQVIRVLAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID IGVTKG GFKG
Sbjct: 206 AVNTVFGQDEMIDVIGVTKGHGFKG 230
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ + V VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQVAVNTVFGQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKK+YR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKVYRV 287
Query: 428 GAGIHTKDGKV 438
G G H K+GKV
Sbjct: 288 GMGYHNKEGKV 298
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 113/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKY-LSM--------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y + M V+KNNAST+YDLT+KSI P+GGFPHYGEV NDFLM+KGC +
Sbjct: 280 -INKKVYRVGMGYHNKEGKVVKNNASTEYDLTDKSINPLGGFPHYGEVTNDFLMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+ LRK L++ ++ ++++
Sbjct: 339 GTKKRVLALRKSLLVQSSRRALEKIDLKF 367
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVI--RVLAHTQMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V VF QDEMID IGVTKG GFK
Sbjct: 203 QQVAVNTVFGQDEMIDVIGVTKGHGFK 229
>gi|225711234|gb|ACO11463.1| 60S ribosomal protein L3 [Caligus rogercresseyi]
Length = 408
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGK K FPKDDP+KPVHLT F+GYKAGMTH+VREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKAKAFPKDDPSKPVHLTCFLGYKAGMTHVVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVT++ETPPMV +GV+GY+ETP GLR+ KTVWAEH+ +E +RRFYKN
Sbjct: 62 RPGSKLNKKEIVEAVTVVETPPMVAIGVVGYIETPRGLRALKTVWAEHIGEEAKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKA KKW+D LGKK I DL+++AKY V+R+I HTQ
Sbjct: 122 WSKSKKKAFTKACKKWEDDLGKKEIEVDLKQIAKYSSVVRLICHTQQ------------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KLLK+RQKKAH+MEIQLNGGS+ DK+ +AR+H E+ I
Sbjct: 169 -----------------------KLLKRRQKKAHIMEIQLNGGSILDKVNFAREHFEKEI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKGFKG
Sbjct: 206 PIRSVFTKDEMIDTIGVTKGKGFKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 118/130 (90%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KLLK+RQKKAH+MEIQLNGGS+ DK+ +AR+H E+ IP+ VF +DEMID IGVTKGKGF
Sbjct: 169 KLLKRRQKKAHIMEIQLNGGSILDKVNFAREHFEKEIPIRSVFTKDEMIDTIGVTKGKGF 228
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSR+QFTVARAGQKGYHHRTE+NKKIY +
Sbjct: 229 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRIQFTVARAGQKGYHHRTEINKKIYDIR 288
Query: 429 AGIHTKDGKV 438
G HT++GK+
Sbjct: 289 RGFHTENGKI 298
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 112/150 (74%), Gaps = 13/150 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSR+QFTVARAGQKGYHHRTE+
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRIQFTVARAGQKGYHHRTEI 280
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK + ++KNNAST+YD+ +KSI PMGGFPHYGEV DF++IKGCC
Sbjct: 281 ---NKKIYDIRRGFHTENGKIVKNNASTEYDIADKSINPMGGFPHYGEVKQDFVIIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+GPKKRV+TLRK L ++K ++ ++
Sbjct: 338 VGPKKRVLTLRKSLLTHTKRKALEVINLKF 367
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 57/69 (82%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R+I + KLLK+RQKKAH+MEIQLNGGS+ DK+ +AR+H E+ IP+ VF +DEMID I
Sbjct: 161 RLICHTQQKLLKRRQKKAHIMEIQLNGGSILDKVNFAREHFEKEIPIRSVFTKDEMIDTI 220
Query: 605 GVTKGKGFK 613
GVTKGKGFK
Sbjct: 221 GVTKGKGFK 229
>gi|387914664|gb|AFK10941.1| 60S ribosomal protein L3 [Callorhinchus milii]
Length = 403
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 170/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCRRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPMVIVG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVIETPPMVIVGLVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD+ GKK + +D M KYC+VIRV+AHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDEEGKKQLEKDFASMKKYCQVIRVLAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEM+D IGVTKG GFKG
Sbjct: 206 AVNTVFGQDEMVDVIGVTKGHGFKG 230
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ + V VF QDEM+D IGVTKG G
Sbjct: 168 MRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQVAVNTVFGQDEMVDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKK+YR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKVYRV 287
Query: 428 GAGIHTKDGKV 438
G G H K+GKV
Sbjct: 288 GMGYHNKEGKV 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 113/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKY-LSM--------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y + M V+KNNAST+YDLT+KSI P+GGFPHYGEV NDFLM+KGC +
Sbjct: 280 -INKKVYRVGMGYHNKEGKVVKNNASTEYDLTDKSINPLGGFPHYGEVTNDFLMMKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+ LRK L++ ++ ++++
Sbjct: 339 GTKKRVLALRKSLLVQSSRRALEKIDLKF 367
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVI--RVLAHTQMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V VF QDEM+D IGVTKG GFK
Sbjct: 203 QQVAVNTVFGQDEMVDVIGVTKGHGFK 229
>gi|392881234|gb|AFM89449.1| 60S ribosomal protein L3 [Callorhinchus milii]
Length = 403
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCRRHRGKVKGFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPMVIVG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVIETPPMVIVGLVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD+ GKK + +D M KYC+VIRV+AHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDEEGKKQLEKDFASMKKYCQVIRVLAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID IGVTKG GFKG
Sbjct: 206 AVNTVFGQDEMIDVIGVTKGHGFKG 230
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ + V VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQVAVNTVFGQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NK++YR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKRVYRV 287
Query: 428 GAGIHTKDGKV 438
G G H K+GKV
Sbjct: 288 GMGYHNKEGKV 298
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 113/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKY-LSM--------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ K+ Y + M V+KNNAST+YDLT+KSI P+GGFPHYGEV NDFLM+KGC +
Sbjct: 280 -INKRVYRVGMGYHNKEGKVVKNNASTEYDLTDKSINPLGGFPHYGEVTNDFLMMKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+ LRK L++ ++ ++++
Sbjct: 339 GTKKRVLALRKSLLVQSSRRALEKIDLKF 367
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVI--RVLAHTQMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V VF QDEMID IGVTKG GFK
Sbjct: 203 QQVAVNTVFGQDEMIDVIGVTKGHGFK 229
>gi|392879502|gb|AFM88583.1| 60S ribosomal protein L3 [Callorhinchus milii]
Length = 403
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 201/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCRRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPMVIVG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVIETPPMVIVGLVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD+ GKK + +D M KYC VIRV+AHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDEEGKKQLEKDFASMKKYCLVIRVLAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID IGVTKG GFKG
Sbjct: 206 AVNTVFGQDEMIDVIGVTKGHGFKG 230
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LEQ + V VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLEQQVAVNTVFGQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKK+YR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKVYRV 287
Query: 428 GAGIHTKDGKV 438
G G H K+GKV
Sbjct: 288 GMGYHNKEGKV 298
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 113/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKY-LSM--------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y + M V+KNNAST+YDLT+KSI P+GGFPHYGEV NDFLM+KGC +
Sbjct: 280 -INKKVYRVGMGYHNKEGKVVKNNASTEYDLTDKSINPLGGFPHYGEVTNDFLMMKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+ LRK L++ ++ ++++
Sbjct: 339 GTKKRVLALRKSLLVQFSRRALEKIDLKF 367
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C+ RV+ +M+LL RQKK+H+MEIQ+NGG++A+KI WAR+ LE
Sbjct: 145 QLEKDFASMKKYCLVI--RVLAHTQMRLLPLRQKKSHIMEIQVNGGTIAEKIDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V VF QDEMID IGVTKG GFK
Sbjct: 203 QQVAVNTVFGQDEMIDVIGVTKGHGFK 229
>gi|170578047|ref|XP_001894243.1| 60S ribosomal protein L3 [Brugia malayi]
gi|158599245|gb|EDP36917.1| 60S ribosomal protein L3, putative [Brugia malayi]
Length = 430
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGF PKKRS RHRGKVK FPKDDP+KP+HLTAF+G+KAGMTHIVRE D
Sbjct: 36 SHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPSKPIHLTAFMGFKAGMTHIVREVD 95
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVT+LETPPM+IVGV+GY++TP G R FKTVWAEHLS++CRRRFYKN
Sbjct: 96 KPGSKVNKKEVVEAVTVLETPPMIIVGVVGYIDTPRGPRQFKTVWAEHLSEDCRRRFYKN 155
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S++KAF K +KKWQD+ G K+I DL KM KYC +IRVIAHT
Sbjct: 156 WNSSKKKAFQKHAKKWQDEDGMKSIQADLAKMKKYCSIIRVIAHT--------------- 200
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK++K R+KKAH+MEIQ+NGG+V +K+ WA +H E+ +
Sbjct: 201 ---------------------QMKVMKHREKKAHIMEIQVNGGTVPEKVDWAYEHFEKQV 239
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMID IGVTKGKGFKG
Sbjct: 240 PVDSVFAQDEMIDTIGVTKGKGFKG 264
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 116/130 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK++K R+KKAH+MEIQ+NGG+V +K+ WA +H E+ +PV VFAQDEMID IGVTKGKG
Sbjct: 202 MKVMKHREKKAHIMEIQVNGGTVPEKVDWAYEHFEKQVPVDSVFAQDEMIDTIGVTKGKG 261
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 262 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRI 321
Query: 428 GAGIHTKDGK 437
T++G+
Sbjct: 322 AKSCLTEEGR 331
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 99/126 (78%), Gaps = 4/126 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 255 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEV 314
Query: 489 ---LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
++ K L+ + N TDYD+TEKSI PMGGFPHYG VN DF++I+GCCMG KKR
Sbjct: 315 NKKIYRIAKSCLTEEGRRNGGTDYDITEKSINPMGGFPHYGLVNQDFVLIRGCCMGSKKR 374
Query: 546 VITLRK 551
ITLRK
Sbjct: 375 PITLRK 380
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MK++K R+KKAH+MEIQ+NGG+V +K+ WA +H E+ +PV VFAQDEMID I
Sbjct: 195 RVIAHTQMKVMKHREKKAHIMEIQVNGGTVPEKVDWAYEHFEKQVPVDSVFAQDEMIDTI 254
Query: 605 GVTKGKGFK 613
GVTKGKGFK
Sbjct: 255 GVTKGKGFK 263
>gi|402589180|gb|EJW83112.1| 50S ribosomal protein L3 [Wuchereria bancrofti]
Length = 396
Score = 358 bits (918), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGF PKKRS RHRGKVK FPKDDP+KP+HLTAF+G+KAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPSKPIHLTAFMGFKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVT+LETPPM+IVGV+GY++TP G R FKTVWAEHLS++CRRRFYKN
Sbjct: 62 KPGSKVNKKEVVEAVTVLETPPMIIVGVVGYIDTPRGPRQFKTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S++KAF K +KKWQD+ G K+I DL KM KYC +IRVIAHT
Sbjct: 122 WNSSKKKAFQKHAKKWQDEDGMKSIQADLAKMKKYCSIIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK++K R+KKAH+MEIQ+NGG++ +K+ WA +H E+ +
Sbjct: 167 ---------------------QMKVMKHREKKAHIMEIQVNGGTIPEKVDWAYEHFEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMID IGVTKGKGFKG
Sbjct: 206 PVDSVFAQDEMIDTIGVTKGKGFKG 230
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/130 (76%), Positives = 116/130 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK++K R+KKAH+MEIQ+NGG++ +K+ WA +H E+ +PV VFAQDEMID IGVTKGKG
Sbjct: 168 MKVMKHREKKAHIMEIQVNGGTIPEKVDWAYEHFEKQVPVDSVFAQDEMIDTIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRI 287
Query: 428 GAGIHTKDGK 437
T++G+
Sbjct: 288 AKSCLTEEGR 297
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 99/126 (78%), Gaps = 4/126 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEV 280
Query: 489 ---LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
++ K L+ + N TDYD+TEKSI PMGGFPHYG VN DF++I+GCCMG KKR
Sbjct: 281 NKKIYRIAKSCLTEEGRRNGGTDYDITEKSINPMGGFPHYGLVNQDFVLIRGCCMGSKKR 340
Query: 546 VITLRK 551
ITLRK
Sbjct: 341 PITLRK 346
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 57/69 (82%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MK++K R+KKAH+MEIQ+NGG++ +K+ WA +H E+ +PV VFAQDEMID I
Sbjct: 161 RVIAHTQMKVMKHREKKAHIMEIQVNGGTIPEKVDWAYEHFEKQVPVDSVFAQDEMIDTI 220
Query: 605 GVTKGKGFK 613
GVTKGKGFK
Sbjct: 221 GVTKGKGFK 229
>gi|225718854|gb|ACO15273.1| 60S ribosomal protein L3 [Caligus clemensi]
Length = 410
Score = 358 bits (918), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 173/265 (65%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKK S RHRGK K FPKDDP+KPVHLT F+GYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMGFYPKKCSKRHRGKAKAFPKDDPSKPVHLTCFLGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTI+ETPP+V +GV+GY+ETP GLR+ KTVWAEH+ +E +RRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTIVETPPLVPIGVVGYIETPRGLRALKTVWAEHIGEEAKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKA KKW+D LGKK I DL++++KY V+R+I HTQ
Sbjct: 122 WSKSKKKAFTKACKKWEDDLGKKEIDNDLKQISKYASVVRLICHTQQ------------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KLLK+RQKKAH+MEIQLNGGS+ DK+ +AR+H E+ I
Sbjct: 169 -----------------------KLLKRRQKKAHIMEIQLNGGSILDKVNFAREHFEKEI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF++DEMID IGVTKGKGFKG
Sbjct: 206 PVRSVFSKDEMIDTIGVTKGKGFKG 230
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 119/130 (91%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KLLK+RQKKAH+MEIQLNGGS+ DK+ +AR+H E+ IPV VF++DEMID IGVTKGKGF
Sbjct: 169 KLLKRRQKKAHIMEIQLNGGSILDKVNFAREHFEKEIPVRSVFSKDEMIDTIGVTKGKGF 228
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSR+Q+TVARAGQKGYHHRTE+NKKIY +
Sbjct: 229 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRIQYTVARAGQKGYHHRTEINKKIYDIR 288
Query: 429 AGIHTKDGKV 438
G HT++GK+
Sbjct: 289 RGFHTENGKM 298
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 112/150 (74%), Gaps = 13/150 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSR+Q+TVARAGQKGYHHRTE+
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRIQYTVARAGQKGYHHRTEI 280
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK + ++KNNASTDYDL +KSI PMGGFPHYGEV DF+++KGCC
Sbjct: 281 ---NKKIYDIRRGFHTENGKMVKNNASTDYDLADKSINPMGGFPHYGEVKQDFMLLKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+GPKKRV+TLRK L ++K ++ ++
Sbjct: 338 VGPKKRVLTLRKSLLTHTKRKALEVVNLKF 367
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E++ND I R+I + KLLK+RQKKAH+MEIQLNGGS+ DK+ +AR+H E
Sbjct: 145 EIDNDLKQISK--YASVVRLICHTQQKLLKRRQKKAHIMEIQLNGGSILDKVNFAREHFE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ IPV VF++DEMID IGVTKGKGFK
Sbjct: 203 KEIPVRSVFSKDEMIDTIGVTKGKGFK 229
>gi|442753801|gb|JAA69060.1| Putative ribosomal protein [Ixodes ricinus]
Length = 390
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 171/253 (67%), Positives = 199/253 (78%), Gaps = 36/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGF PKKRS R RGKVK FPKDDPTKP+HLTAF+G+KAGMTHIVRE D+PGSK+NKKE+V
Sbjct: 1 MGFVPKKRSKRLRGKVKAFPKDDPTKPIHLTAFLGFKAGMTHIVREVDKPGSKVNKKEVV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
E VTILE PPM+IVG++GY+ETP GLR+FKTVWAEHLS+ECRRRFYKNWYKS++KAFTK+
Sbjct: 61 EPVTILEVPPMMIVGLVGYIETPKGLRAFKTVWAEHLSEECRRRFYKNWYKSKKKAFTKS 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKKWQ+ LGK+ I +DL+KM KYCKVIRV+AHT
Sbjct: 121 SKKWQEDLGKQEIERDLKKMKKYCKVIRVLAHT--------------------------- 153
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
QMKL+++RQKKAH+MEIQ+NGGSV KI WAR+HLE+P+ V QVFAQDEMI
Sbjct: 154 ---------QMKLMRRRQKKAHIMEIQVNGGSVGAKIKWAREHLEKPVTVSQVFAQDEMI 204
Query: 291 DCIGVTKGKGFKG 303
D IGVTKGKGFKG
Sbjct: 205 DVIGVTKGKGFKG 217
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/135 (82%), Positives = 125/135 (92%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKL+++RQKKAH+MEIQ+NGGSV KI WAR+HLE+P+ V QVFAQDEMID IGVTKGKG
Sbjct: 155 MKLMRRRQKKAHIMEIQVNGGSVGAKIKWAREHLEKPVTVSQVFAQDEMIDVIGVTKGKG 214
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 215 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKIYRI 274
Query: 428 GAGIHTKDGKVSVTS 442
G G+H KDGK+ V +
Sbjct: 275 GQGVHKKDGKLVVNN 289
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 115/162 (70%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 208 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 266
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++ NNA+TDYD + KSITPMGGFPHYGEVN D++M+KGC M
Sbjct: 267 -INKKIYRIGQGVHKKDGKLVVNNAATDYDTSNKSITPMGGFPHYGEVNCDYVMLKGCIM 325
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKR+ITLRK L+ K+A L +I L + K R
Sbjct: 326 GPKKRIITLRKSLLV--HTKRAALEKINLKFIDTSSKFGHGR 365
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ D +K C RV+ +MKL+++RQKKAH+MEIQ+NGGSV KI WAR+HLE
Sbjct: 132 EIERDLKKMKKYCKVI--RVLAHTQMKLMRRRQKKAHIMEIQVNGGSVGAKIKWAREHLE 189
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+ V QVFAQDEMID IGVTKGKGFK
Sbjct: 190 KPVTVSQVFAQDEMIDVIGVTKGKGFK 216
>gi|241859209|ref|XP_002416193.1| ribosomal protein L3, putative [Ixodes scapularis]
gi|215510407|gb|EEC19860.1| ribosomal protein L3, putative [Ixodes scapularis]
Length = 390
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 171/253 (67%), Positives = 199/253 (78%), Gaps = 36/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGF PKKRS R RGKVK FPKDDPTKP+HLTAF+G+KAGMTHIVRE D+PGSK+NKKE+V
Sbjct: 1 MGFVPKKRSKRLRGKVKAFPKDDPTKPIHLTAFLGFKAGMTHIVREVDKPGSKVNKKEVV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
E VTILE PPM+IVG++GY+ETP GLR+FKTVWAEHLS+ECRRRFYKNWYKS++KAFTK+
Sbjct: 61 EPVTILEVPPMMIVGLVGYIETPKGLRAFKTVWAEHLSEECRRRFYKNWYKSKKKAFTKS 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKKWQ+ LGK+ I +DL+KM KYCKVIRV+AHT
Sbjct: 121 SKKWQEDLGKQEIERDLKKMKKYCKVIRVLAHT--------------------------- 153
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
QMKL+++RQKKAH+MEIQ+NGGSV KI WAR+HLE+P+ V QVFAQDEMI
Sbjct: 154 ---------QMKLMRRRQKKAHIMEIQVNGGSVGAKIKWAREHLEKPVTVSQVFAQDEMI 204
Query: 291 DCIGVTKGKGFKG 303
D IGVTKGKGFKG
Sbjct: 205 DVIGVTKGKGFKG 217
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/135 (82%), Positives = 125/135 (92%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKL+++RQKKAH+MEIQ+NGGSV KI WAR+HLE+P+ V QVFAQDEMID IGVTKGKG
Sbjct: 155 MKLMRRRQKKAHIMEIQVNGGSVGAKIKWAREHLEKPVTVSQVFAQDEMIDVIGVTKGKG 214
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 215 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKIYRI 274
Query: 428 GAGIHTKDGKVSVTS 442
G G+H KDGK+ V +
Sbjct: 275 GQGVHKKDGKLVVNN 289
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 115/162 (70%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 208 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 266
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++ NNA+TDYD + KSITPMGGFPHYGEVN D++M+KGC M
Sbjct: 267 -INKKIYRIGQGVHKKDGKLVVNNAATDYDTSNKSITPMGGFPHYGEVNCDYIMLKGCIM 325
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKR+ITLRK L+ K+A L +I L + K R
Sbjct: 326 GPKKRIITLRKSLLV--HTKRAALEKINLKFIDTSSKFGHGR 365
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ D +K C RV+ +MKL+++RQKKAH+MEIQ+NGGSV KI WAR+HLE
Sbjct: 132 EIERDLKKMKKYCKVI--RVLAHTQMKLMRRRQKKAHIMEIQVNGGSVGAKIKWAREHLE 189
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+ V QVFAQDEMID IGVTKGKGFK
Sbjct: 190 KPVTVSQVFAQDEMIDVIGVTKGKGFK 216
>gi|22203712|gb|AAM94270.1| ribosomal protein L3 [Azumapecten farreri]
Length = 396
Score = 357 bits (917), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 172/267 (64%), Positives = 203/267 (76%), Gaps = 36/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
+ SHRKFSAPRHGS GF PKKR++RHRGKVK FP DD +KPVHLTAFIGYKAGM+HIVR+
Sbjct: 1 RGSHRKFSAPRHGSKGFLPKKRASRHRGKVKAFPTDDKSKPVHLTAFIGYKAGMSHIVRD 60
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
DRPGSK NKKEIVEAVTI+ETPPMVIVG++GY+ETP+GLRSFKT++AEHL+++CRRRFY
Sbjct: 61 VDRPGSKSNKKEIVEAVTIIETPPMVIVGLVGYIETPNGLRSFKTIFAEHLNEDCRRRFY 120
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWY ++KAFTK +KKW D+ GKK I +D +KM KYCKVIRVIAHTQ
Sbjct: 121 KNWYNCKKKAFTKYAKKWTDESGKKEIERDFQKMKKYCKVIRVIAHTQT----------- 169
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
KL+KKRQKKAH+MEIQ+NGG++A K+ WAR+ +E
Sbjct: 170 -------------------------KLMKKRQKKAHIMEIQVNGGTIAQKVDWAREKMES 204
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PVG VFA DE ID IGVTKGKG KG
Sbjct: 205 SVPVGSVFAMDENIDIIGVTKGKGVKG 231
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/130 (81%), Positives = 118/130 (90%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL+KKRQKKAH+MEIQ+NGG++A K+ WAR+ +E +PVG VFA DE ID IGVTKGKG
Sbjct: 170 KLMKKRQKKAHIMEIQVNGGTIAQKVDWAREKMESSVPVGSVFAMDENIDIIGVTKGKGV 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+N+KIYRMG
Sbjct: 230 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINEKIYRMG 289
Query: 429 AGIHTKDGKV 438
G HTKDGK+
Sbjct: 290 EGTHTKDGKL 299
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/171 (61%), Positives = 121/171 (70%), Gaps = 20/171 (11%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+
Sbjct: 222 GVTKGKGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEI 281
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+K M ++KNNASTD+D +EK+ITPMGGFPHYGEVNNDF+MIKGC
Sbjct: 282 ---NEKIYRMGEGTHTKDGKLVKNNASTDFDPSEKNITPMGGFPHYGEVNNDFIMIKGCT 338
Query: 540 MGPKKRVITLRKMKL--LKKRQKKAHLMEIQLNGGSVADKIAWAR-QHLEQ 587
MGPKKR++TLRK L KK+Q + +I L A K R Q E+
Sbjct: 339 MGPKKRILTLRKSLLPSFKKKQ----MEKINLKFIDTASKFGHGRFQTFEE 385
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ DF +K C RVI + KL+KKRQKKAH+MEIQ+NGG++A K+ WAR+ +E
Sbjct: 146 EIERDFQKMKKYCKVI--RVIAHTQTKLMKKRQKKAHIMEIQVNGGTIAQKVDWAREKME 203
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PVG VFA DE ID IGVTKGKG K
Sbjct: 204 SSVPVGSVFAMDENIDIIGVTKGKGVK 230
>gi|94468802|gb|ABF18250.1| ribosomal protein L3 [Aedes aegypti]
Length = 415
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM F P+KR++RH+G++K FPKDDP KPVHLTAF+ YKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFAPRKRASRHQGRIKAFPKDDPAKPVHLTAFLAYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVTILETPP+V+VG +GY+ETP G R+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTILETPPIVVVGAVGYIETPFGPRALCNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+ S++KAFTKASKKW D LGKK+I + +KM +YCK IRVIAH+
Sbjct: 122 WHASKKKAFTKASKKWTDDLGKKSIEDNFKKMIRYCKFIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+ QKKAH++EIQLNGG++ DK+ W ++HLE+P+
Sbjct: 167 ---------------------QIRLIKQGQKKAHIIEIQLNGGTIEDKVNWVKEHLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMIDC+ VTKGKGFKG
Sbjct: 206 PVADVFRQDEMIDCVAVTKGKGFKG 230
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/131 (80%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+ QKKAH++EIQLNGG++ DK+ W ++HLE+P+PV VF QDEMIDC+ VTKGKG
Sbjct: 168 IRLIKQGQKKAHIIEIQLNGGTIEDKVNWVKEHLEKPVPVADVFRQDEMIDCVAVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 115/152 (75%), Gaps = 13/152 (8%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE + KK Y
Sbjct: 231 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGYHHRTE--INKKIYRIG 288
Query: 498 -------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
V+KN+A+T+YDLT+KSITPMGGFP YGE+NNDFLMIKGCC+G K+R+ITLR
Sbjct: 289 AGIHTKDGKVVKNSAATEYDLTDKSITPMGGFPFYGEINNDFLMIKGCCIGAKRRIITLR 348
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
K L+ K+A L +I L + K+ R
Sbjct: 349 KSLLV--HTKRASLEQINLKFIDTSSKMGHGR 378
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 58/69 (84%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +++L+K+ QKKAH++EIQLNGG++ DK+ W ++HLE+P+PV VF QDEMIDC+
Sbjct: 161 RVIAHSQIRLIKQGQKKAHIIEIQLNGGTIEDKVNWVKEHLEKPVPVADVFRQDEMIDCV 220
Query: 605 GVTKGKGFK 613
VTKGKGFK
Sbjct: 221 AVTKGKGFK 229
>gi|351699299|gb|EHB02218.1| 60S ribosomal protein L3 [Heterocephalus glaber]
Length = 419
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 169/257 (65%), Positives = 199/257 (77%), Gaps = 36/257 (14%)
Query: 47 RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINK 106
RHGS+GF P+KRS+RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE DRPGSK+NK
Sbjct: 26 RHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNK 85
Query: 107 KEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKA 166
KE+VEAVTI+ETPPMV+VG++GYVETP GLRSFKTV+AEH+S EC+RRFYKNW+KS++KA
Sbjct: 86 KEVVEAVTIVETPPMVVVGIVGYVETPRGLRSFKTVFAEHISDECKRRFYKNWHKSKKKA 145
Query: 167 FTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSN 226
FTK KKWQD +GKK + +D M KYC+VIR+IAHTQ
Sbjct: 146 FTKYCKKWQDDMGKKQLDKDFSSMKKYCQVIRIIAHTQ---------------------- 183
Query: 227 VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQ 286
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ IPV QVF Q
Sbjct: 184 --------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQIPVSQVFGQ 229
Query: 287 DEMIDCIGVTKGKGFKG 303
DEMID IGVTKGKG+KG
Sbjct: 230 DEMIDVIGVTKGKGYKG 246
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/131 (79%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ IPV QVF QDEMID IGVTKGKG
Sbjct: 184 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQIPVSQVFGQDEMIDVIGVTKGKG 243
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 244 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 303
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 304 GQGYLIKDGKL 314
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 237 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 296
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 297 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 356
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 357 KKRVLTLRKSLLVQTKRRALEKIDLKF 383
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 161 QLDKDFSSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 218
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IPV QVF QDEMID IGVTKGKG+K
Sbjct: 219 QQIPVSQVFGQDEMIDVIGVTKGKGYK 245
>gi|426354155|ref|XP_004044533.1| PREDICTED: 60S ribosomal protein L3-like isoform 1 [Gorilla gorilla
gorilla]
Length = 403
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/265 (64%), Positives = 200/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP KPVHLTAF+GYKAGMTHI+RE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPYKPVHLTAFLGYKAGMTHIMREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RP SK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPASKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISNECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ KK + +D M KYC VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDVKKQLEEDFSSMKKYCHVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ W R+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWVRERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V QVF QDEMID IGVTKG G+KG
Sbjct: 206 NVNQVFGQDEMIDVIGVTKGNGYKG 230
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 112/131 (85%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ W R+ LEQ + V QVF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWVRERLEQQVNVNQVFGQDEMIDVIGVTKGNG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLP KTH+GLRKVACIGAWHP+RV F+VARAGQKG HRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPLKTHRGLRKVACIGAWHPARVAFSVARAGQKGNRHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 108/147 (73%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ +G VTSRWHTKKLP KTH+GLRKVACIGAWHP+RV F+VARAGQKG HRTE
Sbjct: 221 GVTKGNGYKGVTSRWHTKKLPLKTHRGLRKVACIGAWHPARVAFSVARAGQKGNRHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTD DL++KS P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDSDLSDKSTNPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TL + L++ +++ ++++
Sbjct: 341 KKRVLTLHESLLVQMKRQALEKIDLKF 367
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ W R+ LE
Sbjct: 145 QLEEDFSSMKKYCHVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWVRERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V QVF QDEMID IGVTKG G+K
Sbjct: 203 QQVNVNQVFGQDEMIDVIGVTKGNGYK 229
>gi|323650150|gb|ADX97161.1| 60S ribosomal protein l3 [Perca flavescens]
Length = 276
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/265 (63%), Positives = 200/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGK K FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKAKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM++VGV+GYVETP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMIVVGVVGYVETPRGLRSFKTIFAEHVSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDDGKKQLEKDFASMKKYCQVIRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL QKK+HLME+QLNGG+++DK+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLAQKKSHLMEVQLNGGNISDKVDWAREKLEQAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IG+TKG +KG
Sbjct: 206 PINTVFTQDEMIDVIGITKGHRYKG 230
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/109 (74%), Positives = 96/109 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL QKK+HLME+QLNGG+++DK+ WAR+ LEQ +P+ VF QDEMID IG+TKG
Sbjct: 168 MRLLPLAQKKSHLMEVQLNGGNISDKVDWAREKLEQAVPINTVFTQDEMIDVIGITKGHR 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHH 416
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHH
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHH 276
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/46 (91%), Positives = 45/46 (97%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHH 485
VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHH
Sbjct: 231 VTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHH 276
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL QKK+HLME+QLNGG+++DK+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVI--RIIAHTQMRLLPLAQKKSHLMEVQLNGGNISDKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +P+ VF QDEMID IG+TKG +K
Sbjct: 203 QAVPINTVFTQDEMIDVIGITKGHRYK 229
>gi|291223744|ref|XP_002731867.1| PREDICTED: ribosomal protein L3-like [Saccoglossus kowalevskii]
Length = 404
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDD +KP HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKAFPKDDQSKPCHLTAFVGYKAGMTHIVRQVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTI+ETPP+++VGV+GY++TP G R+ KT+WAEHL++ECRRRFYKN
Sbjct: 62 RPGSKVNKKEVVEPVTIIETPPLMVVGVVGYIDTPRGQRTLKTIWAEHLNEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY++++KAFTKASKKW D GK+ I +D M KYCKVIR++AHT
Sbjct: 122 WYRAKKKAFTKASKKWGDDGGKQAIEKDFNAMKKYCKVIRILAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+ +RQKKAH++EIQ+NGG++A+K+ WAR+ LE I
Sbjct: 167 ---------------------QMRLMNQRQKKAHIIEIQINGGTIAEKVDWAREKLESQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKGFKG
Sbjct: 206 PVTQVFVQDEMIDVIGVTKGKGFKG 230
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 105/131 (80%), Positives = 120/131 (91%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+ +RQKKAH++EIQ+NGG++A+K+ WAR+ LE IPV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLMNQRQKKAHIIEIQINGGTIAEKVDWAREKLESQIPVTQVFVQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRW TKKLPRKTHKGLRKVACIGAWHP+RV + VARAGQKGYHHRTELNKK+YR+
Sbjct: 228 FKGVTSRWGTKKLPRKTHKGLRKVACIGAWHPARVGYGVARAGQKGYHHRTELNKKVYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 106/142 (74%), Gaps = 12/142 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRW TKKLPRKTHKGLRKVACIGAWHP+RV + VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWGTKKLPRKTHKGLRKVACIGAWHPARVGYGVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
L KK Y VIKNNA+T+YD T+K ITP+GGFPHYG V NDFLM+KGC +
Sbjct: 280 -LNKKVYRIGAGIHTKDGKVIKNNAATEYDQTDKDITPLGGFPHYGVVKNDFLMLKGCVI 338
Query: 541 GPKKRVITLRKMKLLKKRQKKA 562
GPKKRV+TLRK LL + +KA
Sbjct: 339 GPKKRVLTLRK-SLLTQTSRKA 359
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C R++ +M+L+ +RQKKAH++EIQ+NGG++A+K+ WAR+ LE
Sbjct: 146 IEKDFNAMKKYC--KVIRILAHTQMRLMNQRQKKAHIIEIQINGGTIAEKVDWAREKLES 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV QVF QDEMID IGVTKGKGFK
Sbjct: 204 QIPVTQVFVQDEMIDVIGVTKGKGFK 229
>gi|403220923|dbj|BAM39056.1| ribosomal protein L3 [Theileria orientalis strain Shintoku]
Length = 419
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 185/402 (46%), Positives = 240/402 (59%), Gaps = 80/402 (19%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF PKKRS HR K++ FPKDD + P HLTAF GYKAGMTH+V E D
Sbjct: 2 SHRKFERPRSGSLGFLPKKRSRTHRAKIRSFPKDDVSAPPHLTAFAGYKAGMTHVVTEVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE+VEAVTI+ETPPMV+VG++GYVETP GL+ TVWA HLS E RRRFYKN
Sbjct: 62 KPGSKLHKKEVVEAVTIVETPPMVVVGLVGYVETPKGLKVLGTVWAGHLSDEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK+++KAFTK +K++ + + +L ++ Y V+R + HTQ + SL
Sbjct: 122 WYKAKRKAFTKYAKRFAET----KMENELSRLRNYATVVRALMHTQPSKTSLSL------ 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADK----IAWARQHL 274
+KAHL+E+Q+NGG+ DK I WA +
Sbjct: 172 ------------------------------RKAHLLEVQVNGGTTEDKVRMRIQWATMSI 201
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKI 334
+ D G LM I+ N V DK+
Sbjct: 202 D-----------DSYFPVSG-------------------------LMLIKHNSCIVDDKV 225
Query: 335 AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACI 394
+ E+ +PV VF+++EM+D +GVTKG G KGV +R+ +LPRKTH+GLRKVACI
Sbjct: 226 NFVVNLFEKTVPVSAVFSENEMLDVVGVTKGHGVKGVVARFGVTRLPRKTHRGLRKVACI 285
Query: 395 GAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
G+WHP+RVQF V R GQ GYH RTE NKKIYR+G+G ++G
Sbjct: 286 GSWHPARVQFQVPRHGQMGYHKRTERNKKIYRLGSGSCPRNG 327
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 94/141 (66%), Gaps = 2/141 (1%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G V +R+ +LPRKTH+GLRKVACIG+WHP+RVQF V R GQ GYH RTE
Sbjct: 251 VGVTKGHGVKGVVARFGVTRLPRKTHRGLRKVACIGSWHPARVQFQVPRHGQMGYHKRTE 310
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
+ S N STD DLTEK+ITPMGGFPHYG V DFLM+KGC +G KKRV+T
Sbjct: 311 RNKKIYRLGSGSCPRNGSTDSDLTEKTITPMGGFPHYGVVREDFLMLKGCVVGTKKRVLT 370
Query: 549 LRKMKLLKKRQKKAHLMEIQL 569
LRK L + + L ++QL
Sbjct: 371 LRKT--LVPQTSRVALAQVQL 389
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 35/92 (38%)
Query: 560 KKAHLMEIQLNGGSVADK----IAWARQHL------------------------------ 585
+KAHL+E+Q+NGG+ DK I WA +
Sbjct: 172 RKAHLLEVQVNGGTTEDKVRMRIQWATMSIDDSYFPVSGLMLIKHNSCIVDDKVNFVVNL 231
Query: 586 -EQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
E+ +PV VF+++EM+D +GVTKG G K V
Sbjct: 232 FEKTVPVSAVFSENEMLDVVGVTKGHGVKGVV 263
>gi|346469559|gb|AEO34624.1| hypothetical protein [Amblyomma maculatum]
Length = 390
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 169/253 (66%), Positives = 198/253 (78%), Gaps = 36/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGF PKKRS R RGKVK FPKDDPTKP+HLTAF+G+KAGMTHIVRE D+PGSK+NKKE+V
Sbjct: 1 MGFVPKKRSKRIRGKVKAFPKDDPTKPIHLTAFLGFKAGMTHIVREVDKPGSKVNKKEVV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
E VTILETPPM+IVGV+GY+ETP GLR+FKTVWAEHLS+ECRRRFYKNWYKS++KAFTK+
Sbjct: 61 EPVTILETPPMMIVGVVGYIETPKGLRAFKTVWAEHLSEECRRRFYKNWYKSKKKAFTKS 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
K+WQ+ LG++ I +D +KM KYCKVIRV+AHT
Sbjct: 121 CKRWQEDLGRQEIERDFKKMKKYCKVIRVLAHT--------------------------- 153
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
QMKL+ +RQKKAH+MEIQ+NGG+V KI WAR+HLE+P+PV QVFAQDEMI
Sbjct: 154 ---------QMKLMHRRQKKAHIMEIQVNGGTVGAKIKWAREHLEKPVPVSQVFAQDEMI 204
Query: 291 DCIGVTKGKGFKG 303
D IGVTKGKGFKG
Sbjct: 205 DVIGVTKGKGFKG 217
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/135 (81%), Positives = 125/135 (92%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKL+ +RQKKAH+MEIQ+NGG+V KI WAR+HLE+P+PV QVFAQDEMID IGVTKGKG
Sbjct: 155 MKLMHRRQKKAHIMEIQVNGGTVGAKIKWAREHLEKPVPVSQVFAQDEMIDVIGVTKGKG 214
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKG+HHRTE+NKKIYR+
Sbjct: 215 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGFHHRTEINKKIYRI 274
Query: 428 GAGIHTKDGKVSVTS 442
G G+H KDGK+ + +
Sbjct: 275 GQGVHKKDGKLVINN 289
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/162 (61%), Positives = 113/162 (69%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKG+HHRTE
Sbjct: 208 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGFHHRTE- 266
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++ NNA+TDYD + KSITPMGGFPHYG VN D++M+KGC M
Sbjct: 267 -INKKIYRIGQGVHKKDGKLVINNAATDYDTSNKSITPMGGFPHYGIVNCDYVMLKGCIM 325
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+ L +I L + K R
Sbjct: 326 GPKKRVITLRKSLLV--HTKRTALEKINLKFIDTSSKFGHGR 365
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ DF +K C RV+ +MKL+ +RQKKAH+MEIQ+NGG+V KI WAR+HLE
Sbjct: 132 EIERDFKKMKKYC--KVIRVLAHTQMKLMHRRQKKAHIMEIQVNGGTVGAKIKWAREHLE 189
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+PV QVFAQDEMID IGVTKGKGFK
Sbjct: 190 KPVPVSQVFAQDEMIDVIGVTKGKGFK 216
>gi|324523353|gb|ADY48234.1| 60S ribosomal protein L3, partial [Ascaris suum]
Length = 264
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 170/264 (64%), Positives = 202/264 (76%), Gaps = 36/264 (13%)
Query: 35 VKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIV 94
++ SHRKFSAPRHGSMGF PKKRS RHRGKVK FPKDDPTKP+HLTAFIG+KAGMTHIV
Sbjct: 1 LRTMSHRKFSAPRHGSMGFTPKKRSRRHRGKVKAFPKDDPTKPIHLTAFIGFKAGMTHIV 60
Query: 95 READRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRR 154
RE D+PGSK+NKKE+VEAVTILETPPMVIVG++GY++TP G R FKTVWAEHLS++CRRR
Sbjct: 61 REVDKPGSKVNKKEVVEAVTILETPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRRR 120
Query: 155 FYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
FYKNW+ S++KAF K +KKWQD+ G+K+I DL KM KYC IRVIAHT
Sbjct: 121 FYKNWHTSKKKAFQKHAKKWQDEDGRKSIESDLNKMKKYCSKIRVIAHT----------- 169
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 274
QMK++K R+KKAH+MEIQ+NGG+V +K+ WA++HL
Sbjct: 170 -------------------------QMKVMKHREKKAHIMEIQVNGGTVPEKVDWAKEHL 204
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKG 298
E+ + V VFAQDEMIDCIGVTKG
Sbjct: 205 EKQVAVDSVFAQDEMIDCIGVTKG 228
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ +D +K C K RVI +MK++K R+KKAH+MEIQ+NGG+V +K+ WA++HLE+
Sbjct: 149 IESDLNKMKKYC--SKIRVIAHTQMKVMKHREKKAHIMEIQVNGGTVPEKVDWAKEHLEK 206
Query: 588 PIPVGQVFAQDEMIDCIGVTKG 609
+ V VFAQDEMIDCIGVTKG
Sbjct: 207 QVAVDSVFAQDEMIDCIGVTKG 228
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK++K R+KKAH+MEIQ+NGG+V +K+ WA++HLE+ + V VFAQDEMIDCIGVTKG
Sbjct: 171 MKVMKHREKKAHIMEIQVNGGTVPEKVDWAKEHLEKQVAVDSVFAQDEMIDCIGVTKGT- 229
Query: 368 FKGVTSRW 375
+ G +W
Sbjct: 230 YHGDPGQW 237
>gi|109100340|ref|XP_001106805.1| PREDICTED: 60S ribosomal protein L3-like isoform 2 [Macaca mulatta]
Length = 403
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/265 (64%), Positives = 199/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR +RH GKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRRSRHHGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+E PPMV+VG+ GYVETP GLR+FKTV+AEH+ EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVEMPPMVVVGIAGYVETPRGLRTFKTVFAEHMGDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D KY +VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSTKKYGQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHL EIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLTEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHL EIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLTEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTS WHTKKLPRKTH+GLRKVACIGA HP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSHWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 111/147 (75%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTS WHTKKLPRKTH+GLRKVACIGA HP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSHWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KK+V+TLRK L++ +++ ++++
Sbjct: 341 KKQVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 57/69 (82%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M+LL RQKKAHL EIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID I
Sbjct: 161 RVIAHTQMRLLPLRQKKAHLTEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI 220
Query: 605 GVTKGKGFK 613
GVTKGKG+K
Sbjct: 221 GVTKGKGYK 229
>gi|431900074|gb|ELK08009.1| 60S ribosomal protein L3 [Pteropus alecto]
Length = 533
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 167/257 (64%), Positives = 198/257 (77%), Gaps = 36/257 (14%)
Query: 47 RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINK 106
+HGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE DRPGSK+NK
Sbjct: 28 KHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNK 87
Query: 107 KEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKA 166
KE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT++AEH+S EC+RRFYKNW+KS++KA
Sbjct: 88 KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKA 147
Query: 167 FTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSN 226
FTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 148 FTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQ---------------------- 185
Query: 227 VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQ 286
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF Q
Sbjct: 186 --------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQ 231
Query: 287 DEMIDCIGVTKGKGFKG 303
DEMID IGVTKGKG+KG
Sbjct: 232 DEMIDVIGVTKGKGYKG 248
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 186 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 245
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 246 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 305
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 306 GQGYLIKDGKL 316
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 239 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 298
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 299 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 358
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 359 KKRVLTLRKSLLVQTKRRALEKIDLKF 385
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 163 QLEKDFNSMKKYCQ--VIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 220
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 221 QQVPVNQVFGQDEMIDVIGVTKGKGYK 247
>gi|197632293|gb|ACH70870.1| ribosomal protein L3 [Salmo salar]
Length = 403
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 173/265 (65%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VGV+GYVETP GLRSFKT++AEH+S EC+RRFY+N
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGVVGYVETPRGLRSFKTIFAEHISDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+V+R+IAHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFASMKKYCQVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ I
Sbjct: 167 ---------------------QMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IGVTKG G+KG
Sbjct: 206 PITNVFTQDEMIDVIGVTKGHGYKG 230
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ IP+ VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSIPITNVFTQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWH SRV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHLSRVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTKDGK+
Sbjct: 288 GQGYHTKDGKL 298
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWH SRV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHLSRVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNA+T+YDL+ KSITP+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYHTKDGKLVKNNAATEYDLSNKSITPLGGFVHYGEVTNDFVMLKGCTI 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GVKKRVLTLRKSLLVQSSRRATEKIDLKF 367
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVV--RIIAHTQMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IP+ VF QDEMID IGVTKG G+K
Sbjct: 203 QSIPITNVFTQDEMIDVIGVTKGHGYK 229
>gi|339247749|ref|XP_003375508.1| 60S ribosomal protein L3 [Trichinella spiralis]
gi|316971123|gb|EFV54952.1| 60S ribosomal protein L3 [Trichinella spiralis]
Length = 405
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 175/268 (65%), Positives = 198/268 (73%), Gaps = 43/268 (16%)
Query: 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREA 97
SHRKFSAPRHG +GF PKKRS RHRGKVK FPKDDP KPVHLTAFIGYKAGMTHIVRE
Sbjct: 17 VSHRKFSAPRHGHVGFLPKKRSKRHRGKVKSFPKDDPQKPVHLTAFIGYKAGMTHIVREV 76
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVG--VIGYVETPHGLRSFKTVWAEHLSQECRRRF 155
D+PGSKINKK++VEAVT+LETPPMVIVG V+GY+ETP GLR+FKT+WAEHLS +C+RR
Sbjct: 77 DKPGSKINKKDVVEAVTVLETPPMVIVGKCVVGYIETPQGLRAFKTIWAEHLSDDCKRR- 135
Query: 156 YKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQ 215
YK +KAFTKASKKWQD+ G K I D +M KYCKVIRVIAHT
Sbjct: 136 ----YKCERKAFTKASKKWQDEAGVKEIQTDFARMIKYCKVIRVIAHT------------ 179
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
QMKLL QKKAH+MEIQLNGG++ +K+ WAR+HLE
Sbjct: 180 ------------------------QMKLLHHGQKKAHIMEIQLNGGTIEEKVNWAREHLE 215
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +PV VFA+DEMIDCIGVTKGKGFKG
Sbjct: 216 KQVPVDSVFARDEMIDCIGVTKGKGFKG 243
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/129 (79%), Positives = 117/129 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL QKKAH+MEIQLNGG++ +K+ WAR+HLE+ +PV VFA+DEMIDCIGVTKGKG
Sbjct: 181 MKLLHHGQKKAHIMEIQLNGGTIEEKVNWAREHLEKQVPVDSVFARDEMIDCIGVTKGKG 240
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV++TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 241 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVRYTVARAGQKGYHHRTEINKKIYRI 300
Query: 428 GAGIHTKDG 436
G G K+G
Sbjct: 301 GKGADKKNG 309
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 111/153 (72%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV++TVARAGQKGYHHRTE+
Sbjct: 234 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVRYTVARAGQKGYHHRTEI 293
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ K N ST+YDLTEK+I PMGGFPHYG VN D+++IKGCCMGPKKRVITL
Sbjct: 294 NKKIYRIGKGADKKNGSTEYDLTEKTINPMGGFPHYGMVNQDYVLIKGCCMGPKKRVITL 353
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK L K++ L +I+L + K R
Sbjct: 354 RKSLLT--HTKRSALEKIELKFIDTSSKFGHGR 384
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Query: 527 EVNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
E+ DF MIK C + RVI +MKLL QKKAH+MEIQLNGG++ +K+ WAR+HL
Sbjct: 158 EIQTDFARMIKYCKV---IRVIAHTQMKLLHHGQKKAHIMEIQLNGGTIEEKVNWAREHL 214
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
E+ +PV VFA+DEMIDCIGVTKGKGFK
Sbjct: 215 EKQVPVDSVFARDEMIDCIGVTKGKGFK 242
>gi|209732474|gb|ACI67106.1| 60S ribosomal protein L3 [Salmo salar]
Length = 403
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 173/265 (65%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VGV+GYVETP GLRSFKT++AEH+S EC+RRFY+N
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGVVGYVETPRGLRSFKTIFAEHISDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+V+R+IAHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFASMKKYCQVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ I
Sbjct: 167 ---------------------QMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IGVTKG G+KG
Sbjct: 206 PITNVFTQDEMIDVIGVTKGHGYKG 230
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ IP+ VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSIPITNVFTQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPSRVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G TKDGK+
Sbjct: 288 GQGYRTKDGKL 298
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHPSRV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPSRVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYLS---MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + Y + ++KNNA+T+YDL+ KSITP+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYRTKDGKLVKNNAATEYDLSNKSITPLGGFVHYGEVTNDFVMLKGCTIGV 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ ++ ++++
Sbjct: 341 KKRVLTLRKSLLVQSSRRATEKIDLKF 367
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVV--RIIAHTQMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IP+ VF QDEMID IGVTKG G+K
Sbjct: 203 QSIPITNVFTQDEMIDVIGVTKGHGYK 229
>gi|213510850|ref|NP_001135078.1| 60S ribosomal protein L3 [Salmo salar]
gi|209731890|gb|ACI66814.1| 60S ribosomal protein L3 [Salmo salar]
gi|209738508|gb|ACI70123.1| 60S ribosomal protein L3 [Salmo salar]
gi|209738636|gb|ACI70187.1| 60S ribosomal protein L3 [Salmo salar]
gi|223646872|gb|ACN10194.1| 60S ribosomal protein L3 [Salmo salar]
gi|223672733|gb|ACN12548.1| 60S ribosomal protein L3 [Salmo salar]
Length = 403
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 173/265 (65%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VGV+GYVETP GLRSFKT++AEH+S EC+RRFY+N
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGVVGYVETPRGLRSFKTIFAEHISDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+V+R+IAHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFASMKKYCQVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ I
Sbjct: 167 ---------------------QMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IGVTKG G+KG
Sbjct: 206 PITNVFTQDEMIDVIGVTKGHGYKG 230
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ IP+ VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSIPITNVFTQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPSRVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTKDGK+
Sbjct: 288 GQGYHTKDGKL 298
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 111/149 (74%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHPSRV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPSRVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNA+T+YDL+ KSITP+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYHTKDGKLVKNNAATEYDLSNKSITPLGGFVHYGEVTNDFVMLKGCTI 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GVKKRVLTLRKSLLVQSSRRATEKIDLKF 367
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVV--RIIAHTQMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IP+ VF QDEMID IGVTKG G+K
Sbjct: 203 QSIPITNVFTQDEMIDVIGVTKGHGYK 229
>gi|309268181|ref|XP_001475783.2| PREDICTED: 60S ribosomal protein L3-like [Mus musculus]
Length = 403
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/265 (63%), Positives = 197/265 (74%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KFSAPRHGS+GF P+KRS+RH GKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHGKFSAPRHGSLGFLPRKRSSRHPGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGS++NKKE+VEAVTI+E PPMV+VG++GYVE P GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSEVNKKEVVEAVTIVENPPMVVVGIVGYVENPRGLRTFKTVFAEHISNECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M LL QKKAH MEI +NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MHLLPLCQKKAHFMEIPVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 113/131 (86%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M LL QKKAH MEI +NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MHLLPLCQKKAHFMEIPVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYH+RTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G KDGK+
Sbjct: 288 CQGHLIKDGKL 298
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYH+RTE+
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEI 280
Query: 490 F-----LCKKKYL--SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
+C+ + +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKICQGHLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGA 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TL K L++ +++ ++++
Sbjct: 341 KKRVLTLCKSLLVQTKRRALEKIDLKF 367
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M LL QKKAH MEI +NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMHLLPLCQKKAHFMEIPVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|410965571|ref|XP_003989320.1| PREDICTED: 60S ribosomal protein L3 [Felis catus]
Length = 403
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VGV+GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGVVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>gi|233957366|gb|ACQ91223.1| ribosomal protein L3 [Penaeus monodon]
Length = 406
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 200/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKR RHR +VK FPKDD +KPVHLTAF+GYKAGMTHIVR AD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRCRRHRPRVKTFPKDDKSKPVHLTAFLGYKAGMTHIVRVAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSKIN+KE++EAVTI+ETPPMV VGV+GY++TP GLR KT+WAEHLS+EC+RRFYKN
Sbjct: 62 KPGSKINRKEVLEAVTIIETPPMVCVGVVGYIQTPRGLRVLKTIWAEHLSEECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFT A++KWQD LGKK I +++ KM KYC IR+IAHT
Sbjct: 122 WHKSKKKAFTNAAQKWQDSLGKKMIKREIAKMKKYCTHIRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+++L+K+ KKAH+MEIQLNGG+V++K+ WA H E+ I
Sbjct: 167 ---------------------QVRILRKKFKKAHIMEIQLNGGTVSEKVDWAVNHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VFAQDEMID IGVTKGKG KG
Sbjct: 206 PIDSVFAQDEMIDVIGVTKGKGMKG 230
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
+++L+K+ KKAH+MEIQLNGG+V++K+ WA H E+ IP+ VFAQDEMID IGVTKGKG
Sbjct: 168 VRILRKKFKKAHIMEIQLNGGTVSEKVDWAVNHFEKQIPIDSVFAQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRW TKKLPRKTHKGLRKVACIGAWHP+RVQFTVARAGQKGYHHRTE KKIYR+
Sbjct: 228 MKGVTSRWGTKKLPRKTHKGLRKVACIGAWHPTRVQFTVARAGQKGYHHRTERTKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIHTK+GKV
Sbjct: 288 GKGIHTKEGKV 298
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 111/149 (74%), Gaps = 13/149 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRW TKKLPRKTHKGLRKVACIGAWHP+RVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGMKGVTSRWGTKKLPRKTHKGLRKVACIGAWHPTRVQFTVARAGQKGYHHRTER 280
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
KK Y VIKNNASTDYDLTEK+ITPMGGFPHYGEVN DF+M+KGC
Sbjct: 281 --TKKIYRIGKGIHTKEGKVIKNNASTDYDLTEKTITPMGGFPHYGEVNQDFVMLKGCTA 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
GP+KRV+ +R K L + K++ + +I L
Sbjct: 339 GPRKRVLCMR--KCLYPQTKRSAMEKIDL 365
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 56/69 (81%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R+I ++++L+K+ KKAH+MEIQLNGG+V++K+ WA H E+ IP+ VFAQDEMID I
Sbjct: 161 RIIAHTQVRILRKKFKKAHIMEIQLNGGTVSEKVDWAVNHFEKQIPIDSVFAQDEMIDVI 220
Query: 605 GVTKGKGFK 613
GVTKGKG K
Sbjct: 221 GVTKGKGMK 229
>gi|209734892|gb|ACI68315.1| 60S ribosomal protein L3 [Salmo salar]
gi|209738572|gb|ACI70155.1| 60S ribosomal protein L3 [Salmo salar]
Length = 403
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/265 (64%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P+KRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGFLGFLPRKRSRRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VGV+GYVETP GLRSFKT++AEH+S EC+RRFY+N
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGVVGYVETPRGLRSFKTIFAEHISDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+V+R+IAHT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFASMKKYCQVVRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ I
Sbjct: 167 ---------------------QMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IGVTKG G+KG
Sbjct: 206 PITNVFTQDEMIDVIGVTKGHGYKG 230
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ IP+ VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSIPITNVFTQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPSRVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTKDGK+
Sbjct: 288 GQGYHTKDGKL 298
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 111/149 (74%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHPSRV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPSRVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNA+T+YDL+ KSITP+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYHTKDGKLVKNNAATEYDLSNKSITPLGGFVHYGEVTNDFVMLKGCTI 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GVKKRVLTLRKSLLVQSSRRATEKIDLKF 367
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVV--RIIAHTQMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IP+ VF QDEMID IGVTKG G+K
Sbjct: 203 QSIPITNVFTQDEMIDVIGVTKGHGYK 229
>gi|198435984|ref|XP_002132034.1| PREDICTED: similar to ribosomal protein L3 [Ciona intestinalis]
Length = 411
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 198/265 (74%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FP+DDP+KP HLTAFI YKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKAFPRDDPSKPCHLTAFISYKAGMTHVVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+V+AVTILE PPM++VGVIGY+ETP GLR+ KT++AEHLS EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVDAVTILEAPPMIVVGVIGYIETPRGLRTLKTLFAEHLSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY ++KAFTK+ +KWQD+ GK+ I +D +M KYCKVIRVIAHT
Sbjct: 122 WYACKKKAFTKSCRKWQDEEGKRQIDRDFNQMKKYCKVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL QKK+H+MEIQ+NGG++ +K+ +AR LE+P+
Sbjct: 167 ---------------------QMKLLPITQKKSHIMEIQVNGGTIPEKVDYARDLLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +FA+DEMID IGV KG G KG
Sbjct: 206 PVSNIFAKDEMIDIIGVNKGHGEKG 230
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL QKK+H+MEIQ+NGG++ +K+ +AR LE+P+PV +FA+DEMID IGV KG G
Sbjct: 168 MKLLPITQKKSHIMEIQVNGGTIPEKVDYARDLLEKPVPVSNIFAKDEMIDIIGVNKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++VAR+GQKGYHHRTE+NKKIYR+
Sbjct: 228 EKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAYSVARSGQKGYHHRTEVNKKIYRL 287
Query: 428 GAGIHTKDGKV 438
GAGIH + GK+
Sbjct: 288 GAGIHKEGGKL 298
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/163 (60%), Positives = 118/163 (72%), Gaps = 15/163 (9%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G++ G+ VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++VAR+GQKGYHHRTE+
Sbjct: 221 GVNKGHGEKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAYSVARSGQKGYHHRTEV 280
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK + +IKNNA+T+ D+T+KSITPMGGFPHYGEV NDF+MIKGCC
Sbjct: 281 ---NKKIYRLGAGIHKEGGKLIKNNAATETDITDKSITPMGGFPHYGEVKNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+GPKKRV+TLRK L K+A L +I L + K R
Sbjct: 338 IGPKKRVLTLRKS--LITHTKRAALEKINLKWIDTSSKFGHGR 378
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ DF +K C RVI +MKLL QKK+H+MEIQ+NGG++ +K+ +AR LE
Sbjct: 145 QIDRDFNQMKKYCK--VIRVIAHTQMKLLPITQKKSHIMEIQVNGGTIPEKVDYARDLLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+PV +FA+DEMID IGV KG G K
Sbjct: 203 KPVPVSNIFAKDEMIDIIGVNKGHGEK 229
>gi|391335187|ref|XP_003741977.1| PREDICTED: 60S ribosomal protein L3-like [Metaseiulus occidentalis]
Length = 412
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 198/265 (74%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS GF P+KR ARHRGKVK FPKDD TKPVHLTAF+GYK+GMTHIVRE D
Sbjct: 2 SHRKFHAPRHGSTGFLPRKRCARHRGKVKSFPKDDKTKPVHLTAFLGYKSGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVT++ETPP+VI+GV+GY+ETP GLR+ KT++AEH+S + RRRFYKN
Sbjct: 62 KPGSKVNKKEVVEAVTVIETPPIVIIGVVGYIETPRGLRALKTIFAEHVSDDARRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY S++KAFT+++ KW+ G K I +D +K+ KYC V+RVI HT
Sbjct: 122 WYNSKKKAFTRSALKWRQPEGLKMIERDFKKIQKYCTVVRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM +LK+RQKKAH+MEIQLNGGS+ADKI +AR+H+E+ +
Sbjct: 167 ---------------------QMSMLKRRQKKAHIMEIQLNGGSIADKIKFAREHMEKAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VFAQDEMID IGVTKG G KG
Sbjct: 206 PIKNVFAQDEMIDIIGVTKGHGVKG 230
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/131 (81%), Positives = 120/131 (91%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M +LK+RQKKAH+MEIQLNGGS+ADKI +AR+H+E+ +P+ VFAQDEMID IGVTKG G
Sbjct: 168 MSMLKRRQKKAHIMEIQLNGGSIADKIKFAREHMEKAVPIKNVFAQDEMIDIIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G HT DGK+
Sbjct: 288 GDGFHTVDGKL 298
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 110/162 (67%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGHGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++ NN ST+YD T KSI PMGGF HYGEV DF+M+KGC M
Sbjct: 280 -INKKIYRIGDGFHTVDGKLVSNNGSTEYDNTNKSINPMGGFKHYGEVKQDFVMLKGCVM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GP+KRVITLRK L + K+A I L + K+ R
Sbjct: 339 GPRKRVITLRKS--LITQTKRAATESITLKFIDTSSKMGHGR 378
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF I+ C RVI +M +LK+RQKKAH+MEIQLNGGS+ADKI +AR+H+E+
Sbjct: 146 IERDFKKIQKYCTVV--RVIVHTQMSMLKRRQKKAHIMEIQLNGGSIADKIKFAREHMEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+ VFAQDEMID IGVTKG G K
Sbjct: 204 AVPIKNVFAQDEMIDIIGVTKGHGVK 229
>gi|148232513|ref|NP_001087574.1| MGC84749 protein [Xenopus laevis]
gi|51261715|gb|AAH80121.1| MGC84749 protein [Xenopus laevis]
Length = 420
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 170/265 (64%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGF PKKRS R RGK K FPKD + P HLTAF+GYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFTPKKRSRRIRGKCKAFPKDRRSLPPHLTAFLGYKAGMTHVVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVE VTILE PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREIVEPVTILECPPMVIVGMVGYAPTARGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKASKKW D+ G K I +DLRK+ KYC V+R IAHT
Sbjct: 122 WCKSKRKAFTKASKKWADEAGLKEINRDLRKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+VA K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTVAQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMID IGVTKGKGFKG
Sbjct: 206 PVMNVFAQDEMIDVIGVTKGKGFKG 230
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 151/262 (57%), Positives = 178/262 (67%), Gaps = 47/262 (17%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+VA K+ W RQH E+ IPV VFAQDEMID IGVTKGKG
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTVAQKVDWIRQHFEKQIPVMNVFAQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIG+WHP+RV TVARAGQKGY HRTELNKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGSWHPARVGSTVARAGQKGYFHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ + Q VA++ ++
Sbjct: 288 GLGL--------------------------------------QAQLEVAKSEAAKEDNKD 309
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITPMGGFPHYGEV ND++MIKGCCMGPKKRVI
Sbjct: 310 KAALIKP-------KGNASTEFDLTAKNITPMGGFPHYGEVRNDYVMIKGCCMGPKKRVI 362
Query: 548 TLRKMKL--LKKRQKKAHLMEI 567
TLRK L + +R K+ L++
Sbjct: 363 TLRKTILAQVSRRSKEKILLKF 384
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+VA K+ W RQH E
Sbjct: 145 EINRDLRKIKKYCTVV--RAIAHTQMRLMKHRQKKAHIMEIQVNGGTVAQKVDWIRQHFE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ IPV VFAQDEMID IGVTKGKGFK
Sbjct: 203 KQIPVMNVFAQDEMIDVIGVTKGKGFK 229
>gi|358443180|gb|AEU11836.1| control protein HCTL036 [Eueides isabella]
Length = 217
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 161/240 (67%), Positives = 189/240 (78%), Gaps = 36/240 (15%)
Query: 64 GKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVI 123
GKVK FPKDDP+KPVHLTAFIGYKAGMTH+VRE DRPGSKINKKEIVEAVT++ETPPMV
Sbjct: 1 GKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTVIETPPMVC 60
Query: 124 VGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTI 183
VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKNWYK ++KAFTK+SKKWQD+LG+K+I
Sbjct: 61 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCKKKAFTKSSKKWQDELGRKSI 120
Query: 184 AQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243
+D +KM +YC VIRVIAHT QMKL
Sbjct: 121 EKDFKKMIRYCSVIRVIAHT------------------------------------QMKL 144
Query: 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VF QDEMIDCIGVTKGKG+KG
Sbjct: 145 LKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFTQDEMIDCIGVTKGKGYKG 204
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 71/76 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VF QDEMIDCIGVTKGKG
Sbjct: 142 MKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFTQDEMIDCIGVTKGKG 201
Query: 368 FKGVTSRWHTKKLPRK 383
+KGVTSRWHTKKLPRK
Sbjct: 202 YKGVTSRWHTKKLPRK 217
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 120 IEKDFKKMIRYCSV---IRVIAHTQMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLE 176
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VF QDEMIDCIGVTKGKG+K
Sbjct: 177 KPIPVDSVFTQDEMIDCIGVTKGKGYK 203
>gi|358443186|gb|AEU11839.1| control protein HCTL036 [Heliconius aoede]
Length = 217
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 161/240 (67%), Positives = 189/240 (78%), Gaps = 36/240 (15%)
Query: 64 GKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVI 123
GKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE DRPGSKINKKEIVEAVT++ETPPMV
Sbjct: 1 GKVKAFPKDDSSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTVIETPPMVC 60
Query: 124 VGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTI 183
VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKNWYKS++KAFTK+SKKWQD+LG+K+I
Sbjct: 61 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKSKKKAFTKSSKKWQDELGRKSI 120
Query: 184 AQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243
+D +KM +YC VIRVIAHT QMKL
Sbjct: 121 EKDFKKMIRYCSVIRVIAHT------------------------------------QMKL 144
Query: 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VF QDEMIDCIGVTKGKG+KG
Sbjct: 145 LKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFTQDEMIDCIGVTKGKGYKG 204
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 71/76 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VF QDEMIDCIGVTKGKG
Sbjct: 142 MKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFTQDEMIDCIGVTKGKG 201
Query: 368 FKGVTSRWHTKKLPRK 383
+KGVTSRWHTKKLPRK
Sbjct: 202 YKGVTSRWHTKKLPRK 217
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 120 IEKDFKKMIRYCSV---IRVIAHTQMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLE 176
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VF QDEMIDCIGVTKGKG+K
Sbjct: 177 KPIPVDSVFTQDEMIDCIGVTKGKGYK 203
>gi|312088746|ref|XP_003145979.1| 60S ribosomal protein L3 [Loa loa]
gi|307758859|gb|EFO18093.1| 60S ribosomal protein L3 [Loa loa]
Length = 386
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 193/265 (72%), Gaps = 46/265 (17%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGF PKKRS RHRGKVK FPKDDP+KP+HLTAF+G+KAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPSKPIHLTAFMGFKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVT+LETPPM+IVGV+GY++TP G R FKTVWAEHLS++CRRRFYKN
Sbjct: 62 KPGSKVNKKEVVEAVTVLETPPMIIVGVVGYIDTPRGPRQFKTVWAEHLSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S++KAF K +KKWQD+ G K+I DL KM KYC +IRVIAHTQ
Sbjct: 122 WNSSKKKAFQKHAKKWQDEDGMKSIQADLAKMKKYCSIIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
AH+MEIQ+NGG++ +K+ WA +H E+ +
Sbjct: 168 --------------------------------AHIMEIQVNGGTIPEKVDWAYEHFEKQV 195
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +FAQDEMID IGVTKGKGFKG
Sbjct: 196 PVDSIFAQDEMIDVIGVTKGKGFKG 220
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 94/121 (77%), Positives = 109/121 (90%)
Query: 317 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWH 376
+AH+MEIQ+NGG++ +K+ WA +H E+ +PV +FAQDEMID IGVTKGKGFKGVTSRWH
Sbjct: 167 QAHIMEIQVNGGTIPEKVDWAYEHFEKQVPVDSIFAQDEMIDVIGVTKGKGFKGVTSRWH 226
Query: 377 TKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
TKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+G T++G
Sbjct: 227 TKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRIGKSCLTEEG 286
Query: 437 K 437
K
Sbjct: 287 K 287
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 99/126 (78%), Gaps = 4/126 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 211 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEV 270
Query: 489 ---LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
++ K L+ K N TDYD+TEKSI PMGGFPHYG VN DF++I+GCCMG KKR
Sbjct: 271 NKKIYRIGKSCLTEEGKKNGGTDYDITEKSINPMGGFPHYGLVNQDFILIRGCCMGSKKR 330
Query: 546 VITLRK 551
ITLRK
Sbjct: 331 PITLRK 336
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 45/53 (84%)
Query: 561 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+AH+MEIQ+NGG++ +K+ WA +H E+ +PV +FAQDEMID IGVTKGKGFK
Sbjct: 167 QAHIMEIQVNGGTIPEKVDWAYEHFEKQVPVDSIFAQDEMIDVIGVTKGKGFK 219
>gi|327272509|ref|XP_003221027.1| PREDICTED: 60S ribosomal protein L3-like [Anolis carolinensis]
Length = 403
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 172/265 (64%), Positives = 204/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPMVIVG++GYVETP GLR+F+TV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVVETPPMVIVGIVGYVETPRGLRTFRTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFNSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M++L RQKK+HLMEIQ+NGG+VA+K+ WAR LEQ +
Sbjct: 168 ----------------------MRMLPLRQKKSHLMEIQVNGGTVAEKVDWARAKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSTVFGQDEMIDVIGVTKGKGYKG 230
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M++L RQKK+HLMEIQ+NGG+VA+K+ WAR LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 168 MRMLPLRQKKSHLMEIQVNGGTVAEKVDWARAKLEQQVPVSTVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYQIKDGKL 298
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 107/140 (76%), Gaps = 11/140 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNAST+YD ++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYQIKDGKLIKNNASTEYDQSDKSINPLGGFVHYGEVTNDFIMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQK 560
G KKRV+TLRK L++ +++
Sbjct: 339 GTKKRVLTLRKSLLVQTKRR 358
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M++L RQKK+HLMEIQ+NGG+VA+K+ WAR LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVIAHTQMRMLPLRQKKSHLMEIQVNGGTVAEKVDWARAKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSTVFGQDEMIDVIGVTKGKGYK 229
>gi|358443188|gb|AEU11840.1| control protein HCTL036 [Heliconius burneyi]
gi|358443190|gb|AEU11841.1| control protein HCTL036 [Heliconius doris]
gi|358443192|gb|AEU11842.1| control protein HCTL036 [Heliconius xanthocles]
gi|358443196|gb|AEU11844.1| control protein HCTL036 [Heliconius hortense]
gi|358443198|gb|AEU11845.1| control protein HCTL036 [Heliconius hewitsoni]
gi|358443202|gb|AEU11847.1| control protein HCTL036 [Heliconius sara]
gi|358443204|gb|AEU11848.1| control protein HCTL036 [Heliconius demeter]
gi|358443206|gb|AEU11849.1| control protein HCTL036 [Heliconius charithonia]
Length = 217
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 161/240 (67%), Positives = 189/240 (78%), Gaps = 36/240 (15%)
Query: 64 GKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVI 123
GKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE DRPGSKINKKEIVEAVT++ETPPMV
Sbjct: 1 GKVKAFPKDDSSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTVIETPPMVC 60
Query: 124 VGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTI 183
VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKNWYK ++KAFTK+SKKWQD+LG+K+I
Sbjct: 61 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCKKKAFTKSSKKWQDELGRKSI 120
Query: 184 AQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243
+D +KM +YC VIRVIAHT QMKL
Sbjct: 121 EKDFKKMIRYCSVIRVIAHT------------------------------------QMKL 144
Query: 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG+KG
Sbjct: 145 LKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKGYKG 204
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 142 MKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 201
Query: 368 FKGVTSRWHTKKLPRK 383
+KGVTSRWHTKKLPRK
Sbjct: 202 YKGVTSRWHTKKLPRK 217
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 120 IEKDFKKMIRYCSV---IRVIAHTQMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLE 176
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VFAQDEMIDCIGVTKGKG+K
Sbjct: 177 KPIPVDSVFAQDEMIDCIGVTKGKGYK 203
>gi|347970122|ref|XP_313303.5| AGAP003556-PA [Anopheles gambiae str. PEST]
gi|333468788|gb|EAA08849.5| AGAP003556-PA [Anopheles gambiae str. PEST]
Length = 404
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/253 (62%), Positives = 193/253 (76%), Gaps = 36/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
M FYPKKR++RH+G+VK FPKDD +KPVHLTAF+ YKAGMTHIVREADRPGSKINKKE+V
Sbjct: 1 MAFYPKKRASRHQGRVKAFPKDDASKPVHLTAFLAYKAGMTHIVREADRPGSKINKKEVV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
EAVTILETPP+V+VG +GY+ETP G R+ VWA+HLS+ECRRRFYKNW+ S++KAFTKA
Sbjct: 61 EAVTILETPPLVVVGAVGYIETPFGPRALCNVWAQHLSEECRRRFYKNWHASKKKAFTKA 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKKW D LGKK+I +KM +YCK IRVIAH+
Sbjct: 121 SKKWTDDLGKKSIEDTFKKMVRYCKFIRVIAHS--------------------------- 153
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
Q++L+K+ QKKAH++EIQLNGGS+ADK+ W ++HLE+PIPV QVF+QDEMI
Sbjct: 154 ---------QIRLIKQGQKKAHIIEIQLNGGSIADKVNWVKEHLEKPIPVSQVFSQDEMI 204
Query: 291 DCIGVTKGKGFKG 303
DC+ VTKGKGFKG
Sbjct: 205 DCVAVTKGKGFKG 217
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 125/131 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+ QKKAH++EIQLNGGS+ADK+ W ++HLE+PIPV QVF+QDEMIDC+ VTKGKG
Sbjct: 155 IRLIKQGQKKAHIIEIQLNGGSIADKVNWVKEHLEKPIPVSQVFSQDEMIDCVAVTKGKG 214
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTELNKKIYR+
Sbjct: 215 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGYHHRTELNKKIYRL 274
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 275 GAGIHTKDGKV 285
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 115/153 (75%), Gaps = 15/153 (9%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTEL KK +
Sbjct: 218 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGYHHRTEL---NKKIYRL 274
Query: 500 ----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
VIKN+A+T+YDLT+KSITPMGGFP YGE+N DFLMIKGCC+G K+RVITL
Sbjct: 275 GAGIHTKDGKVIKNSAATEYDLTDKSITPMGGFPFYGEINQDFLMIKGCCIGAKRRVITL 334
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK L+ K++ L +I+L + K+ R
Sbjct: 335 RKSLLV--HTKRSALEQIKLKFIDTSSKMGHGR 365
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +++L+K+ QKKAH++EIQLNGGS+ADK+ W ++HLE+PIPV QVF+QDEMIDC+
Sbjct: 148 RVIAHSQIRLIKQGQKKAHIIEIQLNGGSIADKVNWVKEHLEKPIPVSQVFSQDEMIDCV 207
Query: 605 GVTKGKGFK 613
VTKGKGFK
Sbjct: 208 AVTKGKGFK 216
>gi|358443184|gb|AEU11838.1| control protein HCTL036 [Heliconius hecale]
Length = 217
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 160/240 (66%), Positives = 189/240 (78%), Gaps = 36/240 (15%)
Query: 64 GKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVI 123
GKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE DRPGSKINKKEIVEAVT++ETPPMV
Sbjct: 1 GKVKAFPKDDSSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTVIETPPMVC 60
Query: 124 VGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTI 183
VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKNWYK ++KAFTK+SKKWQD+LG+K+I
Sbjct: 61 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCKKKAFTKSSKKWQDELGRKSI 120
Query: 184 AQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243
+D +KM +YC V+RVIAHT QMKL
Sbjct: 121 EKDFKKMIRYCSVVRVIAHT------------------------------------QMKL 144
Query: 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG+KG
Sbjct: 145 LKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKGYKG 204
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 142 MKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 201
Query: 368 FKGVTSRWHTKKLPRK 383
+KGVTSRWHTKKLPRK
Sbjct: 202 YKGVTSRWHTKKLPRK 217
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + RVI +MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE
Sbjct: 120 IEKDFKKMIRYCSVV---RVIAHTQMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLE 176
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PIPV VFAQDEMIDCIGVTKGKG+K
Sbjct: 177 KPIPVDSVFAQDEMIDCIGVTKGKGYK 203
>gi|311334502|emb|CBN08632.1| small nucleolar RNA, C/D box 43 [Microcosmus squamiger]
Length = 404
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR HRG+V+ FP+DD TKP HLTAF+ YKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCRHHRGRVRSFPRDDKTKPCHLTAFLAYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTILETPP+++VGVIGY++TP GLR+ T++AEHLS EC+RRFYKN
Sbjct: 62 RPGSKMNKKEVVEAVTILETPPIIVVGVIGYIQTPRGLRTLNTIFAEHLSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY +++KAF+KA KWQD+ GK+ I QD KM KYC VIRVIAH+
Sbjct: 122 WYSAKKKAFSKACHKWQDEDGKQQIDQDFAKMKKYCTVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAHLMEIQ+NGGS+ADK+ +AR LE+P+
Sbjct: 167 ---------------------QMKLLPVRQKKAHLMEIQINGGSIADKVEYARNLLEKPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDEMID IGVTKG G+KG
Sbjct: 206 KVADLFGQDEMIDIIGVTKGHGYKG 230
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAHLMEIQ+NGGS+ADK+ +AR LE+P+ V +F QDEMID IGVTKG G
Sbjct: 168 MKLLPVRQKKAHLMEIQINGGSIADKVEYARNLLEKPVKVADLFGQDEMIDIIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VAR+GQKGYHHRTE+NKKIYR+
Sbjct: 228 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARSGQKGYHHRTEINKKIYRV 287
Query: 428 GAGIHTKDGKV 438
G GIH + K+
Sbjct: 288 GVGIHKEGNKI 298
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 117/162 (72%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV F+VAR+GQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAFSVARSGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y + +IKNNAST+ D+T+KSITPMGGFPHYGEV NDF+MIKGCC+
Sbjct: 280 -INKKIYRVGVGIHKEGNKIIKNNASTEVDITDKSITPMGGFPHYGEVKNDFIMIKGCCI 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
G KKRV+TLRK L K+ L +I+L + KI R
Sbjct: 339 GTKKRVLTLRKSLLT--HTKRVALEKIKLKWIDTSSKIGHGR 378
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ DF +K C RVI +MKLL RQKKAHLMEIQ+NGGS+ADK+ +AR LE
Sbjct: 145 QIDQDFAKMKKYCTVI--RVIAHSQMKLLPVRQKKAHLMEIQINGGSIADKVEYARNLLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+ V +F QDEMID IGVTKG G+K
Sbjct: 203 KPVKVADLFGQDEMIDIIGVTKGHGYK 229
>gi|332859844|ref|XP_525601.3| PREDICTED: 60S ribosomal protein L3, partial [Pan troglodytes]
Length = 386
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 163/249 (65%), Positives = 192/249 (77%), Gaps = 36/249 (14%)
Query: 55 PKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVT 114
P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE DRPGSK+NKKE+VEAVT
Sbjct: 1 PRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVT 60
Query: 115 ILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKW 174
I+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKNW+KS++KAFTK KKW
Sbjct: 61 IVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKW 120
Query: 175 QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDS 234
QD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 121 QDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ------------------------------ 150
Query: 235 HESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIG 294
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IG
Sbjct: 151 ------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIG 204
Query: 295 VTKGKGFKG 303
VTKGKG+KG
Sbjct: 205 VTKGKGYKG 213
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 151 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 210
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 211 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 270
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 271 GQGYLIKDGKL 281
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 204 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 263
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 264 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 323
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 324 KKRVLTLRKSLLVQTKRRALEKIDLKF 350
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 128 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 185
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 186 QQVPVNQVFGQDEMIDVIGVTKGKGYK 212
>gi|71984538|ref|NP_001021254.1| Protein RPL-3, isoform a [Caenorhabditis elegans]
gi|1710557|sp|P50880.1|RL3_CAEEL RecName: Full=60S ribosomal protein L3
gi|1181129|emb|CAA93269.1| ribosomal protein L3 [Caenorhabditis elegans]
gi|1181131|emb|CAA93268.1| ribosomal protein L3 [Caenorhabditis elegans]
gi|3875827|emb|CAA90183.1| Protein RPL-3, isoform a [Caenorhabditis elegans]
Length = 401
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG MGF PKKRS +RG++K FPKDD +KP+HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTI+ETPPMVI GV GYV+TP G R+ T+WAEHLS+E RRRFY N
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHT
Sbjct: 122 WAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ +
Sbjct: 167 ---------------------QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VFAQDEMID IGVT+G GFKG
Sbjct: 206 QVDTVFAQDEMIDTIGVTRGHGFKG 230
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 114/130 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ + V VFAQDEMID IGVT+G G
Sbjct: 168 MKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT +N KIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRI 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSALTEEGK 297
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 107/138 (77%), Gaps = 5/138 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT-- 487
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT
Sbjct: 221 GVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTII 280
Query: 488 --ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+++ K L+ KNN ST++DLT+K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 340
Query: 546 VITLRKMKLLKKRQKKAH 563
+ITLRK L+ + ++ AH
Sbjct: 341 LITLRK-SLITQTKRVAH 357
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+
Sbjct: 146 IEADFAKLKKYCSSI--RVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ V VFAQDEMID IGVT+G GFK
Sbjct: 204 QVQVDTVFAQDEMIDTIGVTRGHGFK 229
>gi|268564071|ref|XP_002647082.1| C. briggsae CBR-RPL-3 protein [Caenorhabditis briggsae]
gi|60393717|sp|Q9NBK4.2|RL3_CAEBR RecName: Full=60S ribosomal protein L3
Length = 401
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG MGF PKKRS +RG++K FPKDD +KP+HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAV+I+ETPPMVI GV GY++TP G R+ T+WAEHLS+E RRRFY N
Sbjct: 62 KPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHT
Sbjct: 122 WAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I
Sbjct: 167 ---------------------QMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+QDEMID IGVTKG GFKG
Sbjct: 206 QVDTVFSQDEMIDTIGVTKGHGFKG 230
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/130 (75%), Positives = 114/130 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I V VF+QDEMID IGVTKG G
Sbjct: 168 MKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT +N KIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRI 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSALTEEGK 297
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 106/138 (76%), Gaps = 5/138 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT-- 487
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT
Sbjct: 221 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTII 280
Query: 488 --ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+++ K L+ KNN ST++DLT+K+I PMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKR 340
Query: 546 VITLRKMKLLKKRQKKAH 563
+ITLRK L+ + ++ AH
Sbjct: 341 LITLRK-SLITQTKRVAH 357
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+
Sbjct: 146 IEADFAKLKKYCSSI--RVIAHTQMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
I V VF+QDEMID IGVTKG GFK
Sbjct: 204 QIQVDTVFSQDEMIDTIGVTKGHGFK 229
>gi|341889604|gb|EGT45539.1| CBN-RPL-3 protein [Caenorhabditis brenneri]
Length = 401
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG MGF PKKRS +RG++K FPKDD +KP+HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTI+ETPPMVI GV GY++TP G R+ T+WAEHLS+E RRRFY N
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHT
Sbjct: 122 WAKSKKKAFTKYAKKWQDEDGKKLIESDFAKLKKYCSSIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I
Sbjct: 167 ---------------------QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+QDEMID IGVT+G GFKG
Sbjct: 206 QVDTVFSQDEMIDTIGVTRGHGFKG 230
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 114/130 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I V VF+QDEMID IGVT+G G
Sbjct: 168 MKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTRGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT +N KIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRI 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSALTEEGK 297
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 106/138 (76%), Gaps = 5/138 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT-- 487
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT
Sbjct: 221 GVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTII 280
Query: 488 --ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+++ K L+ KNN ST++DLT+K+I PMGGFP YG VN D+LM++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYLMLRGAILGPKKR 340
Query: 546 VITLRKMKLLKKRQKKAH 563
+ITLRK L+ + ++ AH
Sbjct: 341 LITLRK-SLITQTKRVAH 357
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ +DF +K C RVI +MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+
Sbjct: 146 IESDFAKLKKYCSSI--RVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
I V VF+QDEMID IGVT+G GFK
Sbjct: 204 QIQVDTVFSQDEMIDTIGVTRGHGFK 229
>gi|312385734|gb|EFR30160.1| hypothetical protein AND_00422 [Anopheles darlingi]
Length = 405
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 193/253 (76%), Gaps = 36/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
M FYPKKR++RH+G++K FPKDDPTKPVHLTAF+ YKAGMTHIVREADRPGSKINKKE++
Sbjct: 1 MAFYPKKRASRHQGRIKAFPKDDPTKPVHLTAFLAYKAGMTHIVREADRPGSKINKKEVL 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
EAVTILETPP+V+VG +GY+ETP G R+ VWA+HLS+ECRRRFYKNW+ +++KAFTKA
Sbjct: 61 EAVTILETPPIVVVGAVGYIETPFGPRALCNVWAQHLSEECRRRFYKNWHSAKKKAFTKA 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKKW D LGKK+I +KM +YCK IRVIAH+
Sbjct: 121 SKKWTDDLGKKSIEDTFKKMIRYCKFIRVIAHS--------------------------- 153
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
Q++++K+ QKKAH++EIQLNGGSV DK+ W ++HLE+PIPV QVF+QDEMI
Sbjct: 154 ---------QIRMVKQGQKKAHIIEIQLNGGSVEDKVNWVKEHLEKPIPVSQVFSQDEMI 204
Query: 291 DCIGVTKGKGFKG 303
DC+ VTKGKGFKG
Sbjct: 205 DCVAVTKGKGFKG 217
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 124/131 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++++K+ QKKAH++EIQLNGGSV DK+ W ++HLE+PIPV QVF+QDEMIDC+ VTKGKG
Sbjct: 155 IRMVKQGQKKAHIIEIQLNGGSVEDKVNWVKEHLEKPIPVSQVFSQDEMIDCVAVTKGKG 214
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTELNKKIYR+
Sbjct: 215 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGYHHRTELNKKIYRI 274
Query: 428 GAGIHTKDGKV 438
GAGIH+KDGK+
Sbjct: 275 GAGIHSKDGKI 285
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 113/152 (74%), Gaps = 13/152 (8%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE L KK Y
Sbjct: 218 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGYHHRTE--LNKKIYRIG 275
Query: 498 -------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
++KN+ ST+YD TEK++TPMGGFP YGE+N DFLM+KGCC+G K+RVITLR
Sbjct: 276 AGIHSKDGKIVKNSGSTEYDNTEKTVTPMGGFPFYGEINQDFLMLKGCCIGAKRRVITLR 335
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
K L+ K++ L +I+L + KI R
Sbjct: 336 KSLLV--HTKRSALEQIKLKFIDTSSKIGHGR 365
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 60/69 (86%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +++++K+ QKKAH++EIQLNGGSV DK+ W ++HLE+PIPV QVF+QDEMIDC+
Sbjct: 148 RVIAHSQIRMVKQGQKKAHIIEIQLNGGSVEDKVNWVKEHLEKPIPVSQVFSQDEMIDCV 207
Query: 605 GVTKGKGFK 613
VTKGKGFK
Sbjct: 208 AVTKGKGFK 216
>gi|71896067|ref|NP_001025612.1| ribosomal protein L3-like [Xenopus (Silurana) tropicalis]
gi|60688143|gb|AAH91070.1| MGC108366 protein [Xenopus (Silurana) tropicalis]
Length = 407
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +PKDDP+KPVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPKDDPSKPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R G KI+K+E VEAVTI+ETPP+V+VG++GYVETP GLRS KT++AEH+S EC+RRFY+N
Sbjct: 62 RTGLKISKREEVEAVTIIETPPLVVVGIVGYVETPRGLRSLKTIFAEHISDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++K+FTK SKKWQD+ GKK + +D M KYCKVIRVI HT
Sbjct: 122 WYKSKKKSFTKYSKKWQDEEGKKQLEKDFSAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VADK+ WA + LE+ +
Sbjct: 167 ---------------------QMKLLPLRQKKAHVMEIQLNGGTVADKVDWAHEKLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKGKG +G
Sbjct: 206 PVNSVFGQDEMIDVIGVTKGKGVRG 230
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VADK+ WA + LE+ +PV VF QDEMID IGVTKGKG
Sbjct: 168 MKLLPLRQKKAHVMEIQLNGGTVADKVDWAHEKLEKQVPVNSVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+GVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +T+ARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 VRGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAYTIARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 288 GKGVHMEDGKV 298
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +T+ARAGQKGYHHRTE
Sbjct: 221 GVTKGKGVRGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAYTIARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y V+KNNA+T YD+T+KSITP+GGFPHYG+VNNDFLM+KGC +
Sbjct: 280 -INKKIYRIGKGVHMEDGKVVKNNAATQYDITDKSITPLGGFPHYGQVNNDFLMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L+ ++ +E++
Sbjct: 339 GTKKRVLTLRKSLLVHTSRRALEPIELKF 367
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VADK+ WA + LE
Sbjct: 145 QLEKDFSAMKKYC--KVIRVIVHTQMKLLPLRQKKAHVMEIQLNGGTVADKVDWAHEKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF QDEMID IGVTKGKG +
Sbjct: 203 KQVPVNSVFGQDEMIDVIGVTKGKGVR 229
>gi|358443200|gb|AEU11846.1| control protein HCTL036 [Heliconius ismenius]
Length = 217
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 159/240 (66%), Positives = 189/240 (78%), Gaps = 36/240 (15%)
Query: 64 GKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVI 123
GKVK FPKDD +KPVHLTAFIGYKAGMTH+VRE DRPGSKINKKEIVEAVT++ETPPMV
Sbjct: 1 GKVKAFPKDDSSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTVIETPPMVC 60
Query: 124 VGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTI 183
VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKNWYK ++KAFTK++KKWQD+LG+K+I
Sbjct: 61 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCKKKAFTKSNKKWQDELGRKSI 120
Query: 184 AQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243
+D +KM +YC V+RVIAHT QMKL
Sbjct: 121 EKDFKKMIRYCSVVRVIAHT------------------------------------QMKL 144
Query: 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG+KG
Sbjct: 145 LKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKGYKG 204
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTKGKG
Sbjct: 142 MKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 201
Query: 368 FKGVTSRWHTKKLPRK 383
+KGVTSRWHTKKLPRK
Sbjct: 202 YKGVTSRWHTKKLPRK 217
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 83/125 (66%), Gaps = 19/125 (15%)
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFL-MIKGCCMGPKKRVIT 548
+ CKKK + K+N +L KSI DF MI+ C + RVI
Sbjct: 97 YKCKKKAFT---KSNKKWQDELGRKSI------------EKDFKKMIRYCSVV---RVIA 138
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+MKLLK+RQKKAH+MEIQ+NGG++ DK+ WAR+HLE+PIPV VFAQDEMIDCIGVTK
Sbjct: 139 HTQMKLLKQRQKKAHIMEIQVNGGNIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTK 198
Query: 609 GKGFK 613
GKG+K
Sbjct: 199 GKGYK 203
>gi|60688481|gb|AAH91460.1| Ribosomal protein L3 [Danio rerio]
gi|182889202|gb|AAI64784.1| Rpl3 protein [Danio rerio]
Length = 403
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 169/265 (63%), Positives = 202/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCKRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPM++VGV+GYV TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVVETPPMIVVGVVGYVMTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK K+WQD+ GKK + +D M KYC++IR+IAHTQ
Sbjct: 122 WYKSKKKAFTKYCKRWQDEEGKKQLEKDFSSMKKYCQIIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQLNGG+++DK+ WAR+ LEQ I
Sbjct: 168 ----------------------MRLLPHRQKKSHLMEIQLNGGTISDKVDWAREKLEQSI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF+QDEMID IGVTKG G KG
Sbjct: 206 PIANVFSQDEMIDVIGVTKGHGCKG 230
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQLNGG+++DK+ WAR+ LEQ IP+ VF+QDEMID IGVTKG G
Sbjct: 168 MRLLPHRQKKSHLMEIQLNGGTISDKVDWAREKLEQSIPIANVFSQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 CKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G H KDGK+
Sbjct: 288 GVGYHNKDGKL 298
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGCKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYLSMV---------IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y V +KNNASTDYDL+ KSI P+GGF HYGEV NDFLM+KGC +
Sbjct: 280 -INKKIYKIGVGYHNKDGKLVKNNASTDYDLSNKSINPLGGFVHYGEVTNDFLMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTSRRAQEKIDLKF 367
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLMEIQLNGG+++DK+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQII--RIIAHTQMRLLPHRQKKSHLMEIQLNGGTISDKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IP+ VF+QDEMID IGVTKG G K
Sbjct: 203 QSIPIANVFSQDEMIDVIGVTKGHGCK 229
>gi|308490853|ref|XP_003107618.1| CRE-RPL-3 protein [Caenorhabditis remanei]
gi|308250487|gb|EFO94439.1| CRE-RPL-3 protein [Caenorhabditis remanei]
Length = 401
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG MGF PKKRS +RG++K FPKDD +KP+HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAV+I+ETPPMVI GV GY++TP G R+ T+WAEHLS+E RRRFY N
Sbjct: 62 KPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHT
Sbjct: 122 WAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I
Sbjct: 167 ---------------------QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+QDEMID IGVTKG GFKG
Sbjct: 206 QVDTVFSQDEMIDTIGVTKGHGFKG 230
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 114/130 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I V VF+QDEMID IGVTKG G
Sbjct: 168 MKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT +N KIY++
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYKI 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSALTEEGK 297
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 106/138 (76%), Gaps = 5/138 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT-- 487
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT
Sbjct: 221 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTII 280
Query: 488 --ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+++ K L+ KNN ST++DLT+K+I PMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYKIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGIVNQDYIMLRGAILGPKKR 340
Query: 546 VITLRKMKLLKKRQKKAH 563
+ITLRK L+ + ++ AH
Sbjct: 341 LITLRK-SLITQTKRVAH 357
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+
Sbjct: 146 IEADFAKLKKYCSSI--RVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
I V VF+QDEMID IGVTKG GFK
Sbjct: 204 QIQVDTVFSQDEMIDTIGVTKGHGFK 229
>gi|8572153|gb|AAF77028.1|AF247847_1 ribosomal protein L3 [Caenorhabditis briggsae]
Length = 246
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG MGF PKKRS +RG++K FPKDD +KP+HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAV+I+ETPPMVI GV GY++TP G R+ T+WAEHLS+E RRRFY N
Sbjct: 62 KPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHT
Sbjct: 122 WAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I
Sbjct: 167 ---------------------QMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+QDEMID IGVTKG GFKG
Sbjct: 206 QVDTVFSQDEMIDTIGVTKGHGFKG 230
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 70/79 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I V VF+QDEMID IGVTKG G
Sbjct: 168 MKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHK 386
FKGVTSRWHTKKLPRKTHK
Sbjct: 228 FKGVTSRWHTKKLPRKTHK 246
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+
Sbjct: 146 IEADFAKLKKYCSSI--RVIAHTQMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
I V VF+QDEMID IGVTKG GFK
Sbjct: 204 QIQVDTVFSQDEMIDTIGVTKGHGFK 229
>gi|148228673|ref|NP_001080341.1| ribosomal protein L3 [Xenopus laevis]
gi|27769202|gb|AAH42242.1| Rpl3-prov protein [Xenopus laevis]
Length = 403
Score = 337 bits (865), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 170/265 (64%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR RHRGKVK FPKDDP+KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCKRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPMVIVG++GYV+TP GLRS KT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVVETPPMVIVGIVGYVQTPRGLRSLKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WYKSKKKAFTKYCKKWQDEDGKKQLEKDFASMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQ+NGG++A+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKSHLMEIQVNGGTIAEKVDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+G VF QDEMID IGVTKGKG+KG
Sbjct: 206 VIGGVFGQDEMIDVIGVTKGKGYKG 230
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 119/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG++A+K+ WAR+ LEQ + +G VF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKSHLMEIQVNGGTIAEKVDWAREKLEQQVVIGGVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G H+KDGK+
Sbjct: 288 GQGYHSKDGKL 298
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYLS---MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + Y S ++KNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYHSKDGKLVKNNASTDYDLSDKSINPLGGFVHYGEVKNDFIMLKGCVIGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ ++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTSRRALEKIDLKF 367
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKK+HLMEIQ+NGG++A+K+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVI--RVIAHTQMRLLPLRQKKSHLMEIQVNGGTIAEKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + +G VF QDEMID IGVTKGKG+K
Sbjct: 203 QQVVIGGVFGQDEMIDVIGVTKGKGYK 229
>gi|221116204|ref|XP_002167181.1| PREDICTED: 60S ribosomal protein L3-like [Hydra magnipapillata]
Length = 403
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 191/265 (72%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG++GF P+KRS + ++K FPKDD TKP HLT FIG+KAGMTHIVRE D
Sbjct: 2 SHRKFEAPRHGNLGFLPRKRSKKQLARMKTFPKDDETKPCHLTGFIGFKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GSK++KKE+VEAVTILETPP+VIVG++GYVETP GLR TVWAEHLS EC+RRFYKN
Sbjct: 62 RVGSKVHKKEVVEAVTILETPPIVIVGIVGYVETPRGLRQLTTVWAEHLSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS+ KAFTK+SKKW D+ GKK+I +DL KM KYCKVIRV+ HTQ
Sbjct: 122 WYKSKHKAFTKSSKKWTDENGKKSIERDLEKMIKYCKVIRVLVHTQQ------------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+L+ +QKKAH+MEIQ+NGG + DK+ WA+ HLE+ I
Sbjct: 169 -----------------------RLVGLKQKKAHIMEIQINGGKIVDKVNWAKNHLEKTI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID IG+TKG GFKG
Sbjct: 206 SVSNVFGQDEMIDAIGITKGHGFKG 230
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 108/130 (83%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
+L+ +QKKAH+MEIQ+NGG + DK+ WA+ HLE+ I V VF QDEMID IG+TKG GF
Sbjct: 169 RLVGLKQKKAHIMEIQINGGKIVDKVNWAKNHLEKTISVSNVFGQDEMIDAIGITKGHGF 228
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGVT RW TKKLPRKTHKGLRKVAC+GAWHP+R+ FTV RAGQ GYHHR E NKKIYR+G
Sbjct: 229 KGVTYRWGTKKLPRKTHKGLRKVACVGAWHPARIGFTVPRAGQCGYHHRVERNKKIYRIG 288
Query: 429 AGIHTKDGKV 438
GIHTKD KV
Sbjct: 289 RGIHTKDNKV 298
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/185 (54%), Positives = 121/185 (65%), Gaps = 14/185 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G VT RW TKKLPRKTHKGLRKVAC+GAWHP+R+ FTV RAGQ GYHHR E
Sbjct: 221 GITKGHGFKGVTYRWGTKKLPRKTHKGLRKVACVGAWHPARIGFTVPRAGQCGYHHRVER 280
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
KK Y + V+KNNASTDYDLTEK+ITPMGGFPHYGEV DFLM+KG
Sbjct: 281 --NKKIYRIGRGIHTKDNKVVKNNASTDYDLTEKTITPMGGFPHYGEVTEDFLMLKGAIP 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR-QHLEQPIPVGQVFAQDE 599
GPKKRVI+LRK LL + +KA+ +I L + K R QH ++ + +D+
Sbjct: 339 GPKKRVISLRK-SLLAQTSRKAN-EKITLKFIDTSSKFGHGRFQHDQEKKSFMGLLKKDK 396
Query: 600 MIDCI 604
+D +
Sbjct: 397 HVDVV 401
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 534 MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 593
MIK C + RV+ + +L+ +QKKAH+MEIQ+NGG + DK+ WA+ HLE+ I V
Sbjct: 153 MIKYCKV---IRVLVHTQQRLVGLKQKKAHIMEIQINGGKIVDKVNWAKNHLEKTISVSN 209
Query: 594 VFAQDEMIDCIGVTKGKGFK 613
VF QDEMID IG+TKG GFK
Sbjct: 210 VFGQDEMIDAIGITKGHGFK 229
>gi|421975946|gb|AFX73005.1| ribosomal protein L3 [Spirometra erinaceieuropaei]
Length = 420
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 196/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KFSAPRHGS+GF PKKRS R RGK K FPKD + P HLTAF+G+KAGMTH+VR+ D
Sbjct: 2 SHGKFSAPRHGSLGFTPKKRSRRIRGKCKAFPKDRRSAPPHLTAFMGFKAGMTHVVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVE VTILE PPMVIVG++GY++T GLR+FKT+WAEHLS+ECRRRFYK+
Sbjct: 62 RPGSKVHKKEIVEPVTILECPPMVIVGIVGYIQTAKGLRTFKTIWAEHLSEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+ KS++KAFTKASKKW D+ G I +DL+KM KYC VIRVI HT
Sbjct: 122 FCKSKRKAFTKASKKWADEAGLAAINRDLKKMKKYCTVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+V+ K+ WAR HLE+ I
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTVSQKVDWARSHLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+QDEMID IGVTKGKGFKG
Sbjct: 206 PVANVFSQDEMIDVIGVTKGKGFKG 230
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/124 (79%), Positives = 112/124 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+V+ K+ WAR HLE+ IPV VF+QDEMID IGVTKGKG
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTVSQKVDWARSHLEKQIPVANVFSQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTEMNKKIYRI 287
Query: 428 GAGI 431
G GI
Sbjct: 288 GLGI 291
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 109/157 (69%), Gaps = 25/157 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTE+
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTEM 280
Query: 490 ----------------------FLCKKKYLSMVI--KNNASTDYDLTEKSITPMGGFPHY 525
+ K L+ +I K NAST+YDLT K+ITPMGGFPHY
Sbjct: 281 NKKIYRIGLGIQAQAEAAKMEAAKEENKELAALIKPKGNASTEYDLTAKNITPMGGFPHY 340
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
GEV ND++M+KGC MGPKKRVITLRK LL++ ++A
Sbjct: 341 GEVLNDYVMLKGCIMGPKKRVITLRK-SLLQQTSRRA 376
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D +K C RVI +M+L+K RQKKAH+MEIQ+NGG+V+ K+ WAR HLE+
Sbjct: 146 INRDLKKMKKYCT--VIRVIVHTQMRLMKHRQKKAHIMEIQVNGGTVSQKVDWARSHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 204 QIPVANVFSQDEMIDVIGVTKGKGFK 229
>gi|156359547|ref|XP_001624829.1| predicted protein [Nematostella vectensis]
gi|156211631|gb|EDO32729.1| predicted protein [Nematostella vectensis]
Length = 406
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/266 (62%), Positives = 193/266 (72%), Gaps = 37/266 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P+KR RHRGKVK FPKDD T P HLTAFIG+KAGMTHI+RE +
Sbjct: 2 SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE VEAVTI+ETPPM++VGV+GY+ETP G+R KT+WAEHLS+EC+RRFYKN
Sbjct: 62 KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S++KAFTKASK+W D GKK+I +D M KYCKVIRVI HTQ
Sbjct: 122 WCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQ------------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQP 277
KLLK RQKKAH+MEIQ+NGG VA+K+ W R+ LE P
Sbjct: 169 -----------------------KLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENP 205
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +VF+ DEMID IGVTKG GFKG
Sbjct: 206 APVRKVFSPDEMIDVIGVTKGHGFKG 231
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 113/131 (86%), Gaps = 1/131 (0%)
Query: 309 KLLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
KLLK RQKKAH+MEIQ+NGG VA+K+ W R+ LE P PV +VF+ DEMID IGVTKG G
Sbjct: 169 KLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVT RW TKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQ GYHHRTELNKKIYR+
Sbjct: 229 FKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKKIYRI 288
Query: 428 GAGIHTKDGKV 438
G GIH KDGKV
Sbjct: 289 GQGIHKKDGKV 299
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 109/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT RW TKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQ GYHHRTEL
Sbjct: 222 GVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTEL 281
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
KK Y VIKNNAST+YDLT+KSITPMGGFPHYG+VN DFLM+KGC +
Sbjct: 282 --NKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPMGGFPHYGQVNEDFLMVKGCVV 339
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
GPKKRV+TLRK L+ + A + ++
Sbjct: 340 GPKKRVLTLRKSLLVHTSRDAAEKITLKF 368
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLE 586
+ DF +K C RVI + KLLK RQKKAH+MEIQ+NGG VA+K+ W R+ LE
Sbjct: 146 IEEDFNTMKKYC--KVIRVICHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLE 203
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
P PV +VF+ DEMID IGVTKG GFK
Sbjct: 204 NPAPVRKVFSPDEMIDVIGVTKGHGFK 230
>gi|148223643|ref|NP_001088030.1| ribosomal protein L3-like [Xenopus laevis]
gi|52221158|gb|AAH82692.1| LOC494722 protein [Xenopus laevis]
Length = 407
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +PKDDP+KPVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPKDDPSKPVHLTAFLGYKAGMTHTLREIH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VG++GYVETP GLRS KT++AEH+S EC+RRFY+N
Sbjct: 62 RPGLKISKREEVEAVTIIETPPLVVVGIVGYVETPRGLRSLKTIFAEHISDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++K+FTK KKWQD+ GKK + +D M KYCKVIRVI HT
Sbjct: 122 WYKSKKKSFTKYCKKWQDEEGKKQLEKDFSAMKKYCKVIRVIIHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+ WA + LE+ +
Sbjct: 167 ---------------------QMKLLPLRQKKAHVMEIQLNGGTVAEKVDWAHEKLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IGVTKGKG +G
Sbjct: 206 PINTVFCQDEMIDVIGVTKGKGVRG 230
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+ WA + LE+ +P+ VF QDEMID IGVTKGKG
Sbjct: 168 MKLLPLRQKKAHVMEIQLNGGTVAEKVDWAHEKLEKQVPINTVFCQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+GVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +T+ARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 VRGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAYTIARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIH +DGKV
Sbjct: 288 GKGIHLEDGKV 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +T+ARAGQKGYHHRTE
Sbjct: 221 GVTKGKGVRGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVAYTIARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y V+KNNA+T YD+T+KSITP+GGFPHYG+VNND++M+KGC M
Sbjct: 280 -INKKIYRIGKGIHLEDGKVVKNNAATQYDITDKSITPLGGFPHYGQVNNDYVMLKGCVM 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L+ ++ +E++
Sbjct: 339 GTKKRVLTLRKSLLVHTSRRALEAIELKF 367
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+ WA + LE
Sbjct: 145 QLEKDFSAMKKYC--KVIRVIIHTQMKLLPLRQKKAHVMEIQLNGGTVAEKVDWAHEKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +P+ VF QDEMID IGVTKGKG +
Sbjct: 203 KQVPINTVFCQDEMIDVIGVTKGKGVR 229
>gi|164605513|dbj|BAF98579.1| ribosomal protein L3 [Solea senegalensis]
Length = 403
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/265 (63%), Positives = 199/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGK K FPKDDP KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKAKSFPKDDPNKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM++VGV+GYV TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMMVVGVVGYVNTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+++RVI HT
Sbjct: 122 WYKSKKKAFTKYCKKWQDDDGKKQLEKDFAAMKKYCQIVRVICHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL +QK+AHLME+QLNGG+++DK+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLKQKRAHLMEVQLNGGTISDKVDWAREKLEQAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEMID IGVTKG G+KG
Sbjct: 206 PINTVFTQDEMIDVIGVTKGHGYKG 230
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL +QK+AHLME+QLNGG+++DK+ WAR+ LEQ +P+ VF QDEMID IGVTKG G
Sbjct: 168 MRLLPLKQKRAHLMEVQLNGGTISDKVDWAREKLEQAVPINTVFTQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G HTK+GK+
Sbjct: 288 GQGYHTKEGKL 298
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKY---------LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDL+ KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYHTKEGKLVKNNASTEYDLSNKSINPLGGFVHYGEVTNDFVMVKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTNRRALEKIDLKF 367
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL +QK+AHLME+QLNGG+++DK+ WAR+ LE
Sbjct: 145 QLEKDFAAMKKYCQIV--RVICHTQMRLLPLKQKRAHLMEVQLNGGTISDKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +P+ VF QDEMID IGVTKG G+K
Sbjct: 203 QAVPINTVFTQDEMIDVIGVTKGHGYK 229
>gi|48597014|ref|NP_001001590.1| 60S ribosomal protein L3 [Danio rerio]
gi|45504885|gb|AAS66967.1| ribosomal protein L3 [Danio rerio]
Length = 403
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/265 (63%), Positives = 201/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAP HGS+GF P+KR RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPLHGSLGFLPRKRCKRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPM++VGV+GYV TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVVETPPMIVVGVVGYVMTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK K+WQD+ GKK + +D M KYC++IR+IAHTQ
Sbjct: 122 WYKSKKKAFTKYCKRWQDEEGKKQLEKDFSSMKKYCQIIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQLNGG+++DK+ WAR+ LEQ I
Sbjct: 168 ----------------------MRLLPHRQKKSHLMEIQLNGGTISDKVDWAREKLEQSI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF+QDEMID IGVTKG G KG
Sbjct: 206 PIANVFSQDEMIDVIGVTKGHGCKG 230
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQLNGG+++DK+ WAR+ LEQ IP+ VF+QDEMID IGVTKG G
Sbjct: 168 MRLLPHRQKKSHLMEIQLNGGTISDKVDWAREKLEQSIPIANVFSQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 CKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G H KDGK+
Sbjct: 288 GVGYHNKDGKL 298
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGHGCKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYLSMV---------IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y V +KNNASTDYDL+ KSI P+GGF HYGEV NDFLM+KGC +
Sbjct: 280 -INKKIYKIGVGYHNKDGKLVKNNASTDYDLSNKSINPLGGFVHYGEVTNDFLMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 339 GTKKRVLTLRKSLLVQTSRRAQEKIDLKF 367
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKK+HLMEIQLNGG+++DK+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQII--RIIAHTQMRLLPHRQKKSHLMEIQLNGGTISDKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q IP+ VF+QDEMID IGVTKG G K
Sbjct: 203 QSIPIANVFSQDEMIDVIGVTKGHGCK 229
>gi|340368475|ref|XP_003382777.1| PREDICTED: 60S ribosomal protein L3-like [Amphimedon queenslandica]
Length = 402
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 199/265 (75%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR RHRGKVK FPKDDP+KP HLTA++GYKAGMTH VRE +
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCKRHRGKVKSFPKDDPSKPCHLTAYMGYKAGMTHTVREVN 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K E+VEAVTI+ETPPMV VGV+GY+ETP GLR KT++A+H++++C+RRFYKN
Sbjct: 62 RPGSKSHKNEVVEAVTIIETPPMVCVGVVGYIETPRGLRQLKTIFAQHITEDCKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++ A+TKA+K+W D+ GK+ I QD KM KYCK+IRV+ HTQ
Sbjct: 122 WYRSKKTAYTKAAKRWADEAGKEAIKQDFEKMKKYCKIIRVLCHTQLS------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
++K LK QKK+HLMEIQ+NGG++ADK+ WA++HLE+ I
Sbjct: 170 ---------------------KIKSLK--QKKSHLMEIQVNGGTIADKVEWAKEHLEKEI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF Q+E++D IGVTKGKGFKG
Sbjct: 207 PVSDVFEQNEVLDVIGVTKGKGFKG 231
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 112/123 (91%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKK+HLMEIQ+NGG++ADK+ WA++HLE+ IPV VF Q+E++D IGVTKGKGFKGVTS
Sbjct: 175 KQKKSHLMEIQVNGGTIADKVEWAKEHLEKEIPVSDVFEQNEVLDVIGVTKGKGFKGVTS 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RWHTKKLPRKTHKGLRKVACIGAWHPSRVQ++VARAGQKGYHHRTE+NKKIYR+G+
Sbjct: 235 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQYSVARAGQKGYHHRTEMNKKIYRIGSATEE 294
Query: 434 KDG 436
+G
Sbjct: 295 NNG 297
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 107/140 (76%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQ++VARAGQKGYHHRTE+
Sbjct: 222 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQYSVARAGQKGYHHRTEM 281
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ S +NN T DLT+K ITPMGGFPHYG VNNDFLM+KGC MGPKKRVITL
Sbjct: 282 NKKIYRIGSATEENNGGTKSDLTKKRITPMGGFPHYGVVNNDFLMVKGCVMGPKKRVITL 341
Query: 550 RKMKLLKKRQKKAHLMEIQL 569
RK L+ ++K ++++
Sbjct: 342 RKSLLVNFKRKDREEIDLKF 361
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 55/65 (84%), Gaps = 2/65 (3%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
L K+K LK QKK+HLMEIQ+NGG++ADK+ WA++HLE+ IPV VF Q+E++D IGVTK
Sbjct: 168 LSKIKSLK--QKKSHLMEIQVNGGTIADKVEWAKEHLEKEIPVSDVFEQNEVLDVIGVTK 225
Query: 609 GKGFK 613
GKGFK
Sbjct: 226 GKGFK 230
>gi|291410164|ref|XP_002721356.1| PREDICTED: ribosomal protein L3-like isoform 1 [Oryctolagus
cuniculus]
Length = 400
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 216/307 (70%), Gaps = 46/307 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFS PRHGS+GF P+K S++HRGKV PKDDP+KPVHLTAF+GYKAG+THIV+E D
Sbjct: 2 SHRKFSVPRHGSLGFLPRKCSSQHRGKV---PKDDPSKPVHLTAFLGYKAGLTHIVQEVD 58
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGS++NKKE+VEAVTI+ETPPMV++G++GYVETP GLR+FK ++AEH+S +C+RRFYKN
Sbjct: 59 RPGSEVNKKEVVEAVTIVETPPMVVMGIVGYVETPRGLRTFKMMFAEHISDKCKRRFYKN 118
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GK+ + +D M KYC+VIRV+AHTQ
Sbjct: 119 WHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQ-------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL QKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 165 ----------------------MRLLPLWQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH--LMEIQLNG----GSVAD 332
PV QVF QDEMID IGVTKGKG+K + + KK K H L ++ G VA
Sbjct: 203 PVSQVFGQDEMIDVIGVTKGKGYKA-VTSRWHTKKLPHKTHRGLRKVACIGAWHPARVAF 261
Query: 333 KIAWARQ 339
+AWA Q
Sbjct: 262 SVAWAGQ 268
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 113/131 (86%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL QKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 165 MRLLPLWQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 224
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+K VTSRWHTKKLP KTH+GLRKVACIGAWHP+RV F+VA AGQKGYHHRTE+NKKIY++
Sbjct: 225 YKAVTSRWHTKKLPHKTHRGLRKVACIGAWHPARVAFSVAWAGQKGYHHRTEINKKIYKI 284
Query: 428 GAGIHTKDGKV 438
G G KD K+
Sbjct: 285 GQGYLIKDRKL 295
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 110/150 (73%), Gaps = 15/150 (10%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G +VTSRWHTKKLP KTH+GLRKVACIGAWHP+RV F+VA AGQKGYHHRTE+
Sbjct: 218 GVTKGKGYKAVTSRWHTKKLPHKTHRGLRKVACIGAWHPARVAFSVAWAGQKGYHHRTEI 277
Query: 490 ----------FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+L K + L IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC
Sbjct: 278 NKKIYKIGQGYLIKDRKL---IKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCV 334
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+G KKRV+TL K L+ + K+ L +I L
Sbjct: 335 VGTKKRVLTLHKS--LQVQTKRRALEKIDL 362
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ DF +K C RV+ +M+LL QKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 142 QLDKDFSSMKKYCQVI--RVLAHTQMRLLPLWQKKAHLMEIQVNGGTVAEKLDWARERLE 199
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 200 QQVPVSQVFGQDEMIDVIGVTKGKGYK 226
>gi|387018308|gb|AFJ51272.1| 60S ribosomal protein L3-like [Crotalus adamanteus]
Length = 403
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 169/265 (63%), Positives = 204/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKD+P++P+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDNPSQPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GSK+NKKE+VEAVT++ETPPMVIVG++GYV+TP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RVGSKVNKKEVVEAVTVVETPPMVIVGIVGYVQTPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEEGKKQLEKDFNSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M++L RQKK+HLMEIQ+NGG+VA+K+ WAR LEQ +
Sbjct: 168 ----------------------MRMLPLRQKKSHLMEIQVNGGTVAEKVEWARGKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSTVFGQDEMIDVIGVTKGKGYKG 230
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M++L RQKK+HLMEIQ+NGG+VA+K+ WAR LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 168 MRMLPLRQKKSHLMEIQVNGGTVAEKVEWARGKLEQQVPVSTVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYQIKDGKL 298
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 107/140 (76%), Gaps = 11/140 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNAST+YD ++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 280 -INKKIYKIGQGYQIKDGKLIKNNASTEYDQSDKSINPLGGFVHYGEVTNDFIMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQK 560
G KKRV+TLRK L++ +++
Sbjct: 339 GTKKRVLTLRKSLLVQTKRR 358
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M++L RQKK+HLMEIQ+NGG+VA+K+ WAR LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RVIAHTQMRMLPLRQKKSHLMEIQVNGGTVAEKVEWARGKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSTVFGQDEMIDVIGVTKGKGYK 229
>gi|187607061|ref|NP_001120075.1| ribosomal protein L3 [Xenopus (Silurana) tropicalis]
gi|165970448|gb|AAI58280.1| LOC100145083 protein [Xenopus (Silurana) tropicalis]
gi|165971389|gb|AAI58514.1| LOC100145083 protein [Xenopus (Silurana) tropicalis]
Length = 403
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 170/265 (64%), Positives = 201/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDD +KP+HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSKRHRGKVKSFPKDDQSKPIHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVT++ETPPMVIVG++GYV+TP GLRS KT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTVVETPPMVIVGIVGYVQTPRGLRSLKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLEKDFASMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDEMID IGVTKGKG+KG
Sbjct: 206 AITGVFGQDEMIDVIGVTKGKGYKG 230
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ + + VF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVAITGVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G H+KDGK+
Sbjct: 288 GQGYHSKDGKL 298
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYLS---MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + Y S ++KNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYHSKDGKLVKNNASTDYDLSDKSINPLGGFVHYGEVKNDFVMLKGCVIGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ ++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTSRRALEKIDLKF 367
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFASMKKYCQVI--RVIAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + + VF QDEMID IGVTKGKG+K
Sbjct: 203 QQVAITGVFGQDEMIDVIGVTKGKGYK 229
>gi|226480224|emb|CAX78776.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 419
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/265 (60%), Positives = 193/265 (72%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+QDEMID IGVTKGKGFKG
Sbjct: 206 PVSNVFSQDEMIDVIGVTKGKGFKG 230
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/244 (58%), Positives = 167/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQK Y HRTELNKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKSYFHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 288 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 308
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 309 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 361
Query: 548 TLRK 551
TLRK
Sbjct: 362 TLRK 365
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 146 INRDLKKIKKYCT--VVRAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 204 QIPVSNVFSQDEMIDVIGVTKGKGFK 229
>gi|226475914|emb|CAX72047.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 419
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/265 (60%), Positives = 193/265 (72%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTARGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+QDEMID IGVTKGKGFKG
Sbjct: 206 PVSNVFSQDEMIDVIGVTKGKGFKG 230
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 168/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 288 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 308
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 309 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 361
Query: 548 TLRK 551
TLRK
Sbjct: 362 TLRK 365
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 146 INRDLKKIKKYCT--VVRAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 204 QIPVSNVFSQDEMIDVIGVTKGKGFK 229
>gi|29841161|gb|AAP06174.1| SJCHGC06297 protein [Schistosoma japonicum]
gi|226475918|emb|CAX72049.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226475924|emb|CAX72052.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226475926|emb|CAX72053.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226475928|emb|CAX72054.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226480226|emb|CAX78777.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226480228|emb|CAX78778.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226480236|emb|CAX78782.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226480238|emb|CAX78783.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226480240|emb|CAX78784.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226480242|emb|CAX78785.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226480244|emb|CAX78786.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 419
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/265 (60%), Positives = 193/265 (72%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+QDEMID IGVTKGKGFKG
Sbjct: 206 PVSNVFSQDEMIDVIGVTKGKGFKG 230
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 168/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 288 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 308
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 309 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 361
Query: 548 TLRK 551
TLRK
Sbjct: 362 TLRK 365
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 146 INRDLKKIKKYCT--VVRAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 204 QIPVSNVFSQDEMIDVIGVTKGKGFK 229
>gi|226475916|emb|CAX72048.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 419
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 193/265 (72%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IA
Sbjct: 122 WCKSKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIA----------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
H+QM+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ I
Sbjct: 165 -------------------HIQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+QDEMID IGVTKGKGFKG
Sbjct: 206 PVSNVFSQDEMIDVIGVTKGKGFKG 230
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 145/246 (58%), Positives = 169/246 (68%), Gaps = 46/246 (18%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 365
I M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKG
Sbjct: 166 IQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKG 225
Query: 366 KGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
KGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIY
Sbjct: 226 KGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIY 285
Query: 426 RMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHH 485
R+G G+ Q VA+A +
Sbjct: 286 RIGMGLQA--------------------------------------QLEVAKA-EAAKDD 306
Query: 486 RTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
R + L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KR
Sbjct: 307 RDKNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKR 359
Query: 546 VITLRK 551
VITLRK
Sbjct: 360 VITLRK 365
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 146 INRDLKKIKKYCT--VVRAIAHIQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 204 QIPVSNVFSQDEMIDVIGVTKGKGFK 229
>gi|61654614|gb|AAX48833.1| L3 [Suberites domuncula]
Length = 399
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/265 (59%), Positives = 196/265 (73%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+ F P+KR RHRGKVK FPKDD KP HLTAF+GYKAGMTHI+RE +
Sbjct: 2 SHRKFSAPRHGSLAFLPRKRCKRHRGKVKTFPKDDAAKPCHLTAFMGYKAGMTHILREMN 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K E+VEAVTI+ETPP++IVGV+GY+ETP GLR KT++A+HL+ ECRRRFYKN
Sbjct: 62 RPGSKSHKHEVVEAVTIIETPPIMIVGVVGYIETPRGLRPIKTIFAQHLNDECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S++KAF+KAS +W+D+ G+K+I D K+ KYCKVIRVI HTQ
Sbjct: 122 WSNSKKKAFSKASGRWKDEAGQKSIQADFDKLKKYCKVIRVICHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
VQ+ L RQKKAH+MEIQ+NGGS++DK+ WA++H+E+ I
Sbjct: 168 --------------------VQL-LNGVRQKKAHIMEIQVNGGSISDKVDWAKEHMEKAI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +F +DEMID IGVTKGKGFKG
Sbjct: 207 PIKDIFNKDEMIDVIGVTKGKGFKG 231
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 92/115 (80%), Positives = 107/115 (93%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
RQKKAH+MEIQ+NGGS++DK+ WA++H+E+ IP+ +F +DEMID IGVTKGKGFKGVTS
Sbjct: 175 RQKKAHIMEIQVNGGSISDKVDWAKEHMEKAIPIKDIFNKDEMIDVIGVTKGKGFKGVTS 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RWH KKLPRKTHKGLRKVACIGAWHPSRV F+VARAGQKGYHHRTE+NKKIYR+G
Sbjct: 235 RWHCKKLPRKTHKGLRKVACIGAWHPSRVSFSVARAGQKGYHHRTEINKKIYRIG 289
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 97/125 (77%), Gaps = 6/125 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWH KKLPRKTHKGLRKVACIGAWHPSRV F+VARAGQKGYHHRTE+
Sbjct: 222 GVTKGKGFKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVSFSVARAGQKGYHHRTEI 281
Query: 490 FLCKKKYLSMVIKN---NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK + K NA+T++D TEK ITP+GGFPHYG V NDFLM+KG +GPK+RV
Sbjct: 282 ---NKKIYRIGDKEDNANAATEFDPTEKRITPVGGFPHYGTVKNDFLMLKGAVVGPKRRV 338
Query: 547 ITLRK 551
IT+RK
Sbjct: 339 ITMRK 343
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF +K C RVI +++LL RQKKAH+MEIQ+NGGS++DK+ WA++H+E
Sbjct: 146 IQADFDKLKKYCKVI--RVICHTQVQLLNGVRQKKAHIMEIQVNGGSISDKVDWAKEHME 203
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ IP+ +F +DEMID IGVTKGKGFK
Sbjct: 204 KAIPIKDIFNKDEMIDVIGVTKGKGFK 230
>gi|114660361|ref|XP_001160309.1| PREDICTED: ribosomal protein L3-like [Pan troglodytes]
Length = 407
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+++VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLMVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/130 (75%), Positives = 114/130 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKI+R+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRI 287
Query: 428 GAGIHTKDGK 437
G G H +DGK
Sbjct: 288 GRGPHMEDGK 297
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 106/144 (73%), Gaps = 13/144 (9%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTEL KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL---NKK 283
Query: 496 YLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ +KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKR
Sbjct: 284 IFRIGRGPHMEDGKPVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKR 343
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK L+ ++ +E++
Sbjct: 344 VITLRKSLLVHHSRQAVENIELKF 367
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|226480222|emb|CAX78775.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 419
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 192/265 (72%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++K FTKAS+KW D+ G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKKDFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+QDEMID IGVTKGKGFKG
Sbjct: 206 PVSNVFSQDEMIDVIGVTKGKGFKG 230
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 168/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 288 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 308
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 309 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 361
Query: 548 TLRK 551
TLRK
Sbjct: 362 TLRK 365
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 146 INRDLKKIKKYCT--VVRAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 204 QIPVSNVFSQDEMIDVIGVTKGKGFK 229
>gi|392580132|gb|EIW73259.1| hypothetical protein TREMEDRAFT_37246 [Tremella mesenterica DSM
1558]
Length = 390
Score = 328 bits (840), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 182/398 (45%), Positives = 234/398 (58%), Gaps = 104/398 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PR GS+ F PKKR+ARHRG+VK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEEPRSGSLAFLPKKRAARHRGRVKSFPKDDPKKPVHLTAMLGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPP+VIVGV+GY+ETP GLRS TVWAEHLS E +RRFY+N
Sbjct: 62 RPGSKMHKREVVEAVTVIETPPIVIVGVVGYIETPRGLRSLTTVWAEHLSDELKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFT+ +KK + G+ ++A++L ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYKSKKKAFTRYAKKHSENNGQ-SVARELERIKKYCTVVRVLAHTQLSKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKK+HL EIQ+NGGSVADK+ +AR H E+ +
Sbjct: 173 ----------------------------VQKKSHLAEIQVNGGSVADKVEFARSHFEKEV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
V +F +DE+ID I VTKG G G +IA + K +K H A K+A
Sbjct: 205 AVESIFEKDEVIDVIAVTKGHGVSG-VIARWGVTKLPRKTH---------RGARKVA--- 251
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
CIG WH
Sbjct: 252 --------------------CIGA------------WH---------------------- 257
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
PS+V F+VARAGQ+GYH+R N KIYR+GAG K+G
Sbjct: 258 PSKVMFSVARAGQRGYHNRRAQNLKIYRVGAGNDPKNG 295
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V +RW KLPRKTH+G RKVACIGAWHPS+V F+VARAGQ+GYH+R L +
Sbjct: 226 GVSGVIARWGVTKLPRKTHRGARKVACIGAWHPSKVMFSVARAGQRGYHNRRAQNLKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ N STD+D+T K+I P+GG+ Y ++ NDF+M+KGC GP+KR+ TLRK L
Sbjct: 286 VGAGNDPKNGSTDFDITPKTINPLGGWTRYPDIKNDFVMVKGCTPGPRKRICTLRKS--L 343
Query: 556 KKRQKKAHLMEIQL 569
+ + HL + QL
Sbjct: 344 QLHTSRTHLEQTQL 357
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
QKK+HL EIQ+NGGSVADK+ +AR H E+ + V +F +DE+ID I VTKG G +
Sbjct: 174 QKKSHLAEIQVNGGSVADKVEFARSHFEKEVAVESIFEKDEVIDVIAVTKGHGVSGVI 231
>gi|124783060|gb|ABN14901.1| ribosomal protein L3, partial [Taenia asiatica]
Length = 224
Score = 328 bits (840), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 160/259 (61%), Positives = 191/259 (73%), Gaps = 36/259 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKRS R RGK K FPKD + P HLTAF+G+KAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRSRRIRGKCKAFPKDRRSLPPHLTAFMGFKAGMTHVVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEI+E VTILE PPMVIVG++GY+ T GLR+FKT+WAEHLS+ECRRRFYK+
Sbjct: 62 RPGSKVHKKEIIEPVTILECPPMVIVGIVGYIPTARGLRTFKTIWAEHLSEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+ KS++KAFTKASKKW D+ G I D++KM KYC VIRVIAHT
Sbjct: 122 FCKSKRKAFTKASKKWADEAGLAAINNDIKKMKKYCSVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+VA K+ WAR+HLE+ +
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTVAQKVDWAREHLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTK 297
PV VFAQDEMID IGVTK
Sbjct: 206 PVANVFAQDEMIDVIGVTK 224
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+NND +K C RVI +M+L+K RQKKAH+MEIQ+NGG+VA K+ WAR+HLE+
Sbjct: 146 INNDIKKMKKYC--SVIRVIAHTQMRLMKHRQKKAHIMEIQVNGGTVAQKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTK 608
+PV VFAQDEMID IGVTK
Sbjct: 204 QVPVANVFAQDEMIDVIGVTK 224
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 364
M+L+K RQKKAH+MEIQ+NGG+VA K+ WAR+HLE+ +PV VFAQDEMID IGVTK
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTVAQKVDWAREHLEKQVPVANVFAQDEMIDVIGVTK 224
>gi|196000674|ref|XP_002110205.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588329|gb|EDV28371.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 399
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/265 (60%), Positives = 200/265 (75%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR+ +HRGKVK FPKDD TKP HLTAF+ YKAGMTH++RE D
Sbjct: 8 SHRKFSAPRHGSLGFLPRKRTKKHRGKVKSFPKDDATKPCHLTAFMAYKAGMTHVLREPD 67
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTILETPPMV+VGV+GY+ETP GLR++KTVWAEHL++EC+RRFYKN
Sbjct: 68 RPGSKMNKKEVVEAVTILETPPMVVVGVVGYIETPRGLRTYKTVWAEHLNEECKRRFYKN 127
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK+ K++ D G +TI +D KM KYCKVIRVIAHT
Sbjct: 128 WYRSKKKAFTKSCKRYGDANGVQTIERDFEKMKKYCKVIRVIAHT--------------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+ RQKK+H+MEIQ+NGG++ +K+ +AR LE+ +
Sbjct: 173 ---------------------QIRLVALRQKKSHVMEIQVNGGNIVEKVDYARALLEKEV 211
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P VF+QDEMID IG TKGKGF+G
Sbjct: 212 PADTVFSQDEMIDIIGATKGKGFRG 236
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/129 (67%), Positives = 109/129 (84%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+ RQKK+H+MEIQ+NGG++ +K+ +AR LE+ +P VF+QDEMID IG TKGKG
Sbjct: 174 IRLVALRQKKSHVMEIQVNGGNIVEKVDYARALLEKEVPADTVFSQDEMIDIIGATKGKG 233
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F+GVT RW TKKLPRKTHKGLRKVACIG+WHPSRV F++ARAGQ GYHHRTE+NKKIYR+
Sbjct: 234 FRGVTFRWGTKKLPRKTHKGLRKVACIGSWHPSRVGFSIARAGQTGYHHRTEVNKKIYRI 293
Query: 428 GAGIHTKDG 436
G+G K+
Sbjct: 294 GSGKDEKNA 302
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIG+WHPSRV F++ARAGQ GYHHRTE+ + S
Sbjct: 237 VTFRWGTKKLPRKTHKGLRKVACIGSWHPSRVGFSIARAGQTGYHHRTEVNKKIYRIGSG 296
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST YD T K ITP+GGFPHYG V D++M+KGC MGPKKRVITLRK
Sbjct: 297 KDEKNASTGYDTTVKKITPVGGFPHYGVVTQDYIMLKGCVMGPKKRVITLRK 348
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 8/95 (8%)
Query: 525 YGEVNN------DFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKI 578
YG+ N DF +K C RVI +++L+ RQKK+H+MEIQ+NGG++ +K+
Sbjct: 143 YGDANGVQTIERDFEKMKKYC--KVIRVIAHTQIRLVALRQKKSHVMEIQVNGGNIVEKV 200
Query: 579 AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+AR LE+ +P VF+QDEMID IG TKGKGF+
Sbjct: 201 DYARALLEKEVPADTVFSQDEMIDIIGATKGKGFR 235
>gi|166952267|gb|ABZ04216.1| ribosomal protein rpl3 [Lineus viridis]
Length = 208
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/244 (64%), Positives = 185/244 (75%), Gaps = 36/244 (14%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRKFSAPRHGS+GF PKKRS RHRGKVK FPKDD TKP HLTAF+GYKAGMTH+VREADR
Sbjct: 1 HRKFSAPRHGSLGFLPKKRSKRHRGKVKAFPKDDRTKPCHLTAFLGYKAGMTHLVREADR 60
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
PGSKINKKEIVEAVTI+ETPPM++VG +GYVETP GLR+FKT++AEHL +ECRRRFYKNW
Sbjct: 61 PGSKINKKEIVEAVTIVETPPMIVVGCVGYVETPKGLRTFKTIFAEHLGEECRRRFYKNW 120
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
Y+S++KAFTK SKKWQD+ GKK I D R + KYCKVIRVIAHT
Sbjct: 121 YRSKKKAFTKYSKKWQDEAGKKAIECDFRLIKKYCKVIRVIAHT---------------- 164
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
QMKL+KKRQKKAH+MEIQ+NGG+V+ K+ + R+H+E+ I
Sbjct: 165 --------------------QMKLMKKRQKKAHIMEIQVNGGTVSQKVNFVREHMEKKIS 204
Query: 280 VGQV 283
+ V
Sbjct: 205 INTV 208
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +IK C RVI +MKL+KKRQKKAH+MEIQ+NGG+V+ K+ + R+H+E+
Sbjct: 144 IECDFRLIKKYCKVI--RVIAHTQMKLMKKRQKKAHIMEIQVNGGTVSQKVNFVREHMEK 201
Query: 588 PIPVGQV 594
I + V
Sbjct: 202 KISINTV 208
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 350
MKL+KKRQKKAH+MEIQ+NGG+V+ K+ + R+H+E+ I + V
Sbjct: 166 MKLMKKRQKKAHIMEIQVNGGTVSQKVNFVREHMEKKISINTV 208
>gi|56541782|emb|CAI30273.1| hypothetical protein [Pongo abelii]
Length = 202
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 155/237 (65%), Positives = 183/237 (77%), Gaps = 36/237 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHT
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
QM+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 167 ---------------------QMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 342
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
>gi|449475910|ref|XP_002187558.2| PREDICTED: 60S ribosomal protein L3-like [Taeniopygia guttata]
Length = 407
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 166/265 (62%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +PKDDP+KPVHLTAF+GYKAGMTH VRE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKAWPKDDPSKPVHLTAFLGYKAGMTHTVREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPPMV+VGV+GY+ETP GLR+FKTV+AEH+S ECRRRFYKN
Sbjct: 62 RPGLKISKREEVEAVTIIETPPMVVVGVVGYIETPKGLRNFKTVFAEHISDECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GK+ + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKYCKKWQDEAGKRQLEKDFAAMKKYCKVIRVIMHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAH+MEIQLNGG+VA+K+ W R+ LE+ I
Sbjct: 167 ---------------------QMRLLPLRQKKAHIMEIQLNGGTVAEKVDWVRERLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+Q+EMID IGVTKG G KG
Sbjct: 206 SVHSVFSQNEMIDVIGVTKGHGMKG 230
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAH+MEIQLNGG+VA+K+ W R+ LE+ I V VF+Q+EMID IGVTKG G
Sbjct: 168 MRLLPLRQKKAHIMEIQLNGGTVAEKVDWVRERLEKQISVHSVFSQNEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 MKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIH +DGKV
Sbjct: 288 GHGIHVEDGKV 298
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTE+
Sbjct: 221 GVTKGHGMKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTEI 280
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
KK Y V++NNAST YD+TEK+ITP+GGFPHYGEVNNDFLM+KGC +
Sbjct: 281 --NKKIYRIGHGIHVEDGKVVRNNASTHYDITEKTITPLGGFPHYGEVNNDFLMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G +KRV+TLRK L+ ++ +E++
Sbjct: 339 GTRKRVLTLRKSLLVHTSRRAHEAIELKF 367
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAH+MEIQLNGG+VA+K+ W R+ LE
Sbjct: 145 QLEKDFAAMKKYC--KVIRVIMHTQMRLLPLRQKKAHIMEIQLNGGTVAEKVDWVRERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ I V VF+Q+EMID IGVTKG G K
Sbjct: 203 KQISVHSVFSQNEMIDVIGVTKGHGMK 229
>gi|226480250|emb|CAX78789.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 228
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 189/261 (72%), Gaps = 36/261 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGK 299
PV VF+QDEMID IGVTKGK
Sbjct: 206 PVSNVFSQDEMIDVIGVTKGK 226
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 146 INRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGK 610
IPV VF+QDEMID IGVTKGK
Sbjct: 204 QIPVSNVFSQDEMIDVIGVTKGK 226
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 366
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGK
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGK 226
>gi|47218047|emb|CAG11452.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 192/265 (72%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG GF P KRS +HRG+V+ +PKDD ++PVHLTAF+GYKAGMTH +RE
Sbjct: 1 SHRKFHAPRHGHTGFLPHKRSKKHRGRVRSWPKDDTSRPVHLTAFLGYKAGMTHTLREVQ 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R G K +K+E VEAVTI+ETPP+++ GV+GY+ T HGLRSFKT++AEHLS EC+RRFY+N
Sbjct: 61 RVGLKQSKREEVEAVTIIETPPVIVFGVVGYIRTVHGLRSFKTLFAEHLSDECKRRFYRN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S+KWQD+ G+K + +++ +M KYC VIRVI HT
Sbjct: 121 WYKSKKKAFTKYSRKWQDQTGRKQLDKEIEQMKKYCSVIRVIVHT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL QKK+H+ME+QLNGGS++DK+ WAR+HLE+ +
Sbjct: 166 ---------------------QMRLLPISQKKSHIMEVQLNGGSISDKVDWAREHLERAV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGV+KG GFKG
Sbjct: 205 PVSAVFCQDEMIDIIGVSKGHGFKG 229
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL QKK+H+ME+QLNGGS++DK+ WAR+HLE+ +PV VF QDEMID IGV+KG G
Sbjct: 167 MRLLPISQKKSHIMEVQLNGGSISDKVDWAREHLERAVPVSAVFCQDEMIDIIGVSKGHG 226
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +T+ARAGQKGYHHRTE+NKKI+R+
Sbjct: 227 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYTIARAGQKGYHHRTEINKKIFRI 286
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 287 GKGVHIQDGKV 297
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 112/150 (74%), Gaps = 13/150 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +T+ARAGQKGYHHRTE+
Sbjct: 220 GVSKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYTIARAGQKGYHHRTEI 279
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK + VI+NNAST YD ++K+ITPMGGFPHYGEVNNDF+M+KGC
Sbjct: 280 ---NKKIFRIGKGVHIQDGKVIRNNASTSYDTSQKTITPMGGFPHYGEVNNDFVMVKGCV 336
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+GPKKR++TLRK L+ +K +E++
Sbjct: 337 VGPKKRLLTLRKSLLVHTSRKSREAIELKF 366
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M+LL QKK+H+ME+QLNGGS++DK+ WAR+HLE+ +PV VF QDEMID I
Sbjct: 160 RVIVHTQMRLLPISQKKSHIMEVQLNGGSISDKVDWAREHLERAVPVSAVFCQDEMIDII 219
Query: 605 GVTKGKGFK 613
GV+KG GFK
Sbjct: 220 GVSKGHGFK 228
>gi|19115692|ref|NP_594780.1| 60S ribosomal protein L3 [Schizosaccharomyces pombe 972h-]
gi|548771|sp|P36584.2|RL3B_SCHPO RecName: Full=60S ribosomal protein L3-B
gi|5059|emb|CAA40901.1| ribosomal protein L3 [Schizosaccharomyces pombe]
gi|13810236|emb|CAC37425.1| 60S ribosomal protein L3 [Schizosaccharomyces pombe]
Length = 388
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 186/398 (46%), Positives = 235/398 (59%), Gaps = 105/398 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHGS+GF P+KR++R RGKVK FPKDD +KPVHLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EI+EAVTI+ETPPMV+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK +KK+ + ++I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLA------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSVADK+ WAR+H E+ +
Sbjct: 173 -----------------------------QKKAHLMEIQVNGGSVADKVEWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
+ F Q+EMID IGVT+GKG N G+ A W
Sbjct: 204 DIKSTFEQNEMIDVIGVTRGKG-------------------------NEGTTAR---WGT 235
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+ L + G + CIG WH
Sbjct: 236 KRLPRKTHRGL-----RKVACIGA------------WH---------------------- 256
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
P+ VQ+TVARAG GY HRT+LN KIYR+GAG K+
Sbjct: 257 PANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNA 294
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 97/153 (63%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G T+RW TK+LPRKTH+GLRKVACIGAWHP+ VQ+TVARAG GY HRT+L
Sbjct: 219 GVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + NASTD+D TEK ITPMGGF YG V NDF+M+ G GP KRV+TL
Sbjct: 279 NSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTL 338
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK LL +KA L + L A K R
Sbjct: 339 RK-SLLTHTSRKA-LEPVSLKWIDTASKFGHGR 369
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N + IK C RV+ +++ QKKAHLMEIQ+NGGSVADK+ WAR+H E+
Sbjct: 144 INRELERIKKYC--SVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKG 611
+ + F Q+EMID IGVT+GKG
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKG 225
>gi|19114383|ref|NP_593471.1| 60S ribosomal protein L3 [Schizosaccharomyces pombe 972h-]
gi|730556|sp|P40372.2|RL3A_SCHPO RecName: Full=60S ribosomal protein L3-A
gi|508856|gb|AAA19655.1| ribosomal protein L3 [Schizosaccharomyces pombe]
gi|2370475|emb|CAB11503.1| 60S ribosomal protein L3 [Schizosaccharomyces pombe]
Length = 388
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 185/398 (46%), Positives = 235/398 (59%), Gaps = 105/398 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHGS+GF P+KR++R RGKVK FPKDD +KPVHLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EI+EAVT++ETPPMV+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK +KK+ + ++I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLA------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSVADK+ WAR+H E+ +
Sbjct: 173 -----------------------------QKKAHLMEIQVNGGSVADKVEWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
+ F Q+EMID IGVT+GKG N G+ A W
Sbjct: 204 DIKSTFEQNEMIDVIGVTRGKG-------------------------NEGTTAR---WGT 235
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+ L + G + CIG WH
Sbjct: 236 KRLPRKTHRGL-----RKVACIGA------------WH---------------------- 256
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
P+ VQ+TVARAG GY HRT+LN KIYR+GAG K+
Sbjct: 257 PANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNA 294
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 97/153 (63%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G T+RW TK+LPRKTH+GLRKVACIGAWHP+ VQ+TVARAG GY HRT+L
Sbjct: 219 GVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + NASTD+D TEK ITPMGGF YG V NDF+M+ G GP KRV+TL
Sbjct: 279 NSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTL 338
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK LL +KA L + L A K R
Sbjct: 339 RK-SLLTHTSRKA-LEPVSLKWIDTASKFGHGR 369
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N + IK C RV+ +++ QKKAHLMEIQ+NGGSVADK+ WAR+H E+
Sbjct: 144 INRELERIKKYC--SVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKG 611
+ + F Q+EMID IGVT+GKG
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKG 225
>gi|225006193|dbj|BAH28892.1| ribosomal protein L3 [Polypedilum vanderplanki]
Length = 204
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 151/237 (63%), Positives = 177/237 (74%), Gaps = 36/237 (15%)
Query: 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREA 97
SHRKFSAPRHGSM FYPKKR+ RHRGKVK FPKDDPTKPVHLT FI YKAGMTHIVREA
Sbjct: 1 GSHRKFSAPRHGSMAFYPKKRAQRHRGKVKAFPKDDPTKPVHLTCFISYKAGMTHIVREA 60
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
DRPGSKINKKE+VEAVTILETPP+V+VG +GY+ETPHG R+ VWA+HLS+ECRRRFYK
Sbjct: 61 DRPGSKINKKEVVEAVTILETPPIVVVGAVGYIETPHGPRALCNVWAQHLSEECRRRFYK 120
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
NWY S++KAFTKASKKW D LGKKTI + +KM +YCK IR+I H+
Sbjct: 121 NWYSSKKKAFTKASKKWTDDLGKKTIEDNFKKMIRYCKYIRIIVHS-------------- 166
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 274
Q++L+K+ QKKAH+MEIQLNGG++ DK+ W ++HL
Sbjct: 167 ----------------------QIRLIKQGQKKAHIMEIQLNGGTIEDKVQWVKEHL 201
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
R+I +++L+K+ QKKAH+MEIQLNGG++ DK+ W ++HL
Sbjct: 161 RIIVHSQIRLIKQGQKKAHIMEIQLNGGTIEDKVQWVKEHL 201
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 30/34 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 341
++L+K+ QKKAH+MEIQLNGG++ DK+ W ++HL
Sbjct: 168 IRLIKQGQKKAHIMEIQLNGGTIEDKVQWVKEHL 201
>gi|18606060|gb|AAH22790.1| Unknown (protein for IMAGE:3538792), partial [Homo sapiens]
Length = 374
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 153/237 (64%), Positives = 180/237 (75%), Gaps = 36/237 (15%)
Query: 67 KCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGV 126
K FPKDDP+KPVHLTAF+GYKAGMTHIVRE DRPGSK+NKKE+VEAVTI+ETPPMV+VG+
Sbjct: 1 KSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGI 60
Query: 127 IGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQD 186
+GYVETP GLR+FKTV+AEH+S EC+RRFYKNW+KS++KAFTK KKWQD+ GKK + +D
Sbjct: 61 VGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKD 120
Query: 187 LRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKK 246
M KYC+VIRVIAHTQ M+LL
Sbjct: 121 FSSMKKYCQVIRVIAHTQ------------------------------------MRLLPL 144
Query: 247 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 145 RQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 201
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 139 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 198
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 199 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 258
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 259 GQGYLIKDGKL 269
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 192 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 251
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 252 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 311
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 312 KKRVLTLRKSLLVQTKRRALEKIDLKF 338
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 116 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 173
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 174 QQVPVNQVFGQDEMIDVIGVTKGKGYK 200
>gi|326929147|ref|XP_003210731.1| PREDICTED: 60S ribosomal protein L3-like [Meleagris gallopavo]
Length = 407
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +PKDDP+KP+HLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPKDDPSKPIHLTAFMGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG +I+K+E VEAVTI+ETPPMV+VGV+GY++TP GLR+FKTV+AEH+S ECRRRFYKN
Sbjct: 62 RPGLRISKREEVEAVTIIETPPMVVVGVVGYIDTPKGLRNFKTVFAEHISDECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFAAMKKYCKVIRVIMHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+KI W R+ LE+ I
Sbjct: 167 ---------------------QMKLLPLRQKKAHVMEIQLNGGTVAEKIDWVRERLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+Q+EMID IGVTKG G KG
Sbjct: 206 SVHSVFSQNEMIDVIGVTKGHGMKG 230
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+KI W R+ LE+ I V VF+Q+EMID IGVTKG G
Sbjct: 168 MKLLPLRQKKAHVMEIQLNGGTVAEKIDWVRERLEKQISVHSVFSQNEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWH+KKLPRKTHKGLRKVACIGAWHP+RV ++VARAGQKGYHHRTELNKKI+R+
Sbjct: 228 MKGVTSRWHSKKLPRKTHKGLRKVACIGAWHPARVGYSVARAGQKGYHHRTELNKKIFRI 287
Query: 428 GAGIHTKDGKV 438
G GIH +DGKV
Sbjct: 288 GRGIHVEDGKV 298
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 115/150 (76%), Gaps = 13/150 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWH+KKLPRKTHKGLRKVACIGAWHP+RV ++VARAGQKGYHHRTEL
Sbjct: 221 GVTKGHGMKGVTSRWHSKKLPRKTHKGLRKVACIGAWHPARVGYSVARAGQKGYHHRTEL 280
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK + V+KNNAST+YD+TEKSITP+GGFPHYGEVNNDFLM+KGC
Sbjct: 281 ---NKKIFRIGRGIHVEDGKVVKNNASTNYDVTEKSITPLGGFPHYGEVNNDFLMLKGCV 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+GPKKRV+TLRK L+ R++ +E++
Sbjct: 338 VGPKKRVLTLRKSLLVHTRRRAHEAIELKF 367
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+KI W R+ LE
Sbjct: 145 QLEKDFAAMKKYC--KVIRVIMHTQMKLLPLRQKKAHVMEIQLNGGTVAEKIDWVRERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ I V VF+Q+EMID IGVTKG G K
Sbjct: 203 KQISVHSVFSQNEMIDVIGVTKGHGMK 229
>gi|260790238|ref|XP_002590150.1| hypothetical protein BRAFLDRAFT_126055 [Branchiostoma floridae]
gi|229275339|gb|EEN46161.1| hypothetical protein BRAFLDRAFT_126055 [Branchiostoma floridae]
Length = 404
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 196/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR R +GKVK FPKDD +KP HLTAF+GYKAGMTH++RE +
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRCRRAKGKVKAFPKDDASKPPHLTAFMGYKAGMTHVLREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R G+K K+E+V+AVTI+ETPPMV+VGV+GY+ TP G R+F+T++AEHLS+ECRRRFYKN
Sbjct: 62 RTGAKSTKREVVDAVTIIETPPMVVVGVVGYIATPKGRRAFRTIFAEHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY S++KAFTK +KKWQD GKK I +D ++M KYC IRVI HT
Sbjct: 122 WYSSKKKAFTKYAKKWQDDDGKKQIEKDFKQMKKYCINIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK L RQKK+H+MEIQ+NGG++A+K+ WAR+HLE+ I
Sbjct: 167 ---------------------QMKDLPHRQKKSHIMEIQVNGGTIAEKVDWAREHLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IG+TKGKGFKG
Sbjct: 206 PVSQVFGQDEMIDIIGITKGKGFKG 230
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK L RQKK+H+MEIQ+NGG++A+K+ WAR+HLE+ IPV QVF QDEMID IG+TKGKG
Sbjct: 168 MKDLPHRQKKSHIMEIQVNGGTIAEKVDWAREHLEKQIPVSQVFGQDEMIDIIGITKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRW TKKLPRKTHKGLRKVACIGAWHP+RV + VARAGQKGY+HRTE+NKK+YR+
Sbjct: 228 FKGVTSRWGTKKLPRKTHKGLRKVACIGAWHPARVGYGVARAGQKGYNHRTEINKKVYRV 287
Query: 428 GAGIHTKDGKV 438
G GIH KDGKV
Sbjct: 288 GTGIHVKDGKV 298
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 106/136 (77%), Gaps = 11/136 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G VTSRW TKKLPRKTHKGLRKVACIGAWHP+RV + VARAGQKGY+HRTE+
Sbjct: 221 GITKGKGFKGVTSRWGTKKLPRKTHKGLRKVACIGAWHPARVGYGVARAGQKGYNHRTEI 280
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
KK Y VIKNNA+T+YDLTEK+ITP+GGFPHYGE NDF+MI+GCC+
Sbjct: 281 --NKKVYRVGTGIHVKDGKVIKNNAATEYDLTEKTITPLGGFPHYGECKNDFIMIRGCCV 338
Query: 541 GPKKRVITLRKMKLLK 556
GPKKRV+TLRK L++
Sbjct: 339 GPKKRVLTLRKSLLVQ 354
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C+ RVI +MK L RQKK+H+MEIQ+NGG++A+K+ WAR+HLE
Sbjct: 145 QIEKDFKQMKKYCINI--RVIVHTQMKDLPHRQKKSHIMEIQVNGGTIAEKVDWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ IPV QVF QDEMID IG+TKGKGFK
Sbjct: 203 KQIPVSQVFGQDEMIDIIGITKGKGFK 229
>gi|321263851|ref|XP_003196643.1| large subunit ribosomal protein L3 [Cryptococcus gattii WM276]
gi|317463120|gb|ADV24856.1| Large subunit ribosomal protein L3, putative [Cryptococcus gattii
WM276]
Length = 390
Score = 318 bits (814), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PRHGS+ F PKKR+ARHRG+ K FPKDDP KPVHLTA +GYKAGMTHIVR+ D
Sbjct: 2 SHRKYEEPRHGSLAFLPKKRAARHRGRCKAFPKDDPKKPVHLTAVMGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPMV+VG +GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVIETPPMVVVGAVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G ++A++L ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYRSKKKAFTRYAKKHSENSG-ASVARELERIKKYCTVVRVLAHTQISKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR H E+ +
Sbjct: 173 ----------------------------QQKKAHLMEIQVNGGSVADKVDFARSHFEKTV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG VF QDE ID IGVTKG G++G
Sbjct: 205 EVGSVFEQDECIDIIGVTKGHGYEG 229
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 99/123 (80%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR H E+ + VG VF QDE ID IGVTKG G++GVT+
Sbjct: 173 QQKKAHLMEIQVNGGSVADKVDFARSHFEKTVEVGSVFEQDECIDIIGVTKGHGYEGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW T +LPRKTH+GLRKVACIGAWHPS V F+VARAGQ+GYH RT +N KIYR+ G
Sbjct: 233 RWGTTRLPRKTHRGLRKVACIGAWHPSNVMFSVARAGQRGYHSRTSMNHKIYRIANGASG 292
Query: 434 KDG 436
G
Sbjct: 293 SSG 295
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW T +LPRKTH+GLRKVACIGAWHPS V F+VARAGQ+GYH RT +
Sbjct: 220 GVTKGHGYEGVTARWGTTRLPRKTHRGLRKVACIGAWHPSNVMFSVARAGQRGYHSRTSM 279
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + ++ ST++DLT+K ITPMGGF YG V NDF+MIKG C+GP KR++TL
Sbjct: 280 NHKIYRIANGASGSSGSTEFDLTKKDITPMGGFVRYGVVKNDFVMIKGTCVGPVKRIVTL 339
Query: 550 RKMKLLKKRQKKAHLMEIQL 569
RK L+ +AH ++ L
Sbjct: 340 RKA--LRTHTSRAHTEKVSL 357
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLMEIQ+NGGSVADK+ +AR H E+ + VG VF QDE ID I
Sbjct: 160 RVLAHTQISKTGLQQKKAHLMEIQVNGGSVADKVDFARSHFEKTVEVGSVFEQDECIDII 219
Query: 605 GVTKGKGFK 613
GVTKG G++
Sbjct: 220 GVTKGHGYE 228
>gi|58260576|ref|XP_567698.1| large subunit ribosomal protein L3 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134117057|ref|XP_772755.1| 60S ribosomal protein L3 [Cryptococcus neoformans var. neoformans
B-3501A]
gi|50255373|gb|EAL18108.1| hypothetical protein CNBK1290 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229779|gb|AAW46181.1| large subunit ribosomal protein L3, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 390
Score = 318 bits (814), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PRHGS+ F PKKR+ARHRG+ K FPKDDP KPVHLTA +GYKAGMTHIVR+ D
Sbjct: 2 SHRKYEEPRHGSLAFLPKKRAARHRGRCKAFPKDDPKKPVHLTAVMGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPMV+VG +GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVIETPPMVVVGAVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G ++A++L ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYRSKKKAFTRYAKKHSENSG-ASVARELERIKKYCTVVRVLAHTQISKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR H E+ +
Sbjct: 173 ----------------------------QQKKAHLMEIQVNGGSVADKVDFARSHFEKTV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG VF QDE ID IGVTKG G++G
Sbjct: 205 DVGSVFEQDECIDIIGVTKGHGYEG 229
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 99/123 (80%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR H E+ + VG VF QDE ID IGVTKG G++GVT+
Sbjct: 173 QQKKAHLMEIQVNGGSVADKVDFARSHFEKTVDVGSVFEQDECIDIIGVTKGHGYEGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW T +LPRKTH+GLRKVACIGAWHPS V F+VARAGQ+GYH RT +N KIYR+ G
Sbjct: 233 RWGTTRLPRKTHRGLRKVACIGAWHPSNVMFSVARAGQRGYHSRTSMNHKIYRIANGASG 292
Query: 434 KDG 436
G
Sbjct: 293 SSG 295
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW T +LPRKTH+GLRKVACIGAWHPS V F+VARAGQ+GYH RT +
Sbjct: 220 GVTKGHGYEGVTARWGTTRLPRKTHRGLRKVACIGAWHPSNVMFSVARAGQRGYHSRTSM 279
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + ++ ST++DLT+K ITPMGGF YG V NDF+MIKG C+GP KR++TL
Sbjct: 280 NHKIYRIANGASGSSGSTEFDLTKKDITPMGGFVRYGVVKNDFVMIKGTCVGPVKRIVTL 339
Query: 550 RKMKLLKKRQKKAHLMEIQL 569
RK L+ +AH ++ L
Sbjct: 340 RKA--LRTHTSRAHTEKVTL 357
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLMEIQ+NGGSVADK+ +AR H E+ + VG VF QDE ID I
Sbjct: 160 RVLAHTQISKTGLQQKKAHLMEIQVNGGSVADKVDFARSHFEKTVDVGSVFEQDECIDII 219
Query: 605 GVTKGKGFK 613
GVTKG G++
Sbjct: 220 GVTKGHGYE 228
>gi|449300493|gb|EMC96505.1| hypothetical protein BAUCODRAFT_24265 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP K VHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKAVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKEIVEA T++ETPPM++VG++GY+ETP GLRS KTVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKNHKKEIVEACTVIETPPMIVVGLVGYIETPRGLRSLKTVWAEHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK D+ G K I QDL ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKHADESG-KNITQDLERIKKYCTVVRVLAHTQISKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS++DK+ +A E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSLSDKVDYAHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDEMIDCI VTKG G++G
Sbjct: 205 EIDNVFEQDEMIDCIAVTKGHGYQG 229
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS++DK+ +A E+P+ + VF QDEMIDCI VTKG G++GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSLSDKVDYAHGLFEKPVEIDNVFEQDEMIDCIAVTKGHGYQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRVGKG 289
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 99/134 (73%), Gaps = 2/134 (1%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GYQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ NASTD+D+++K ITPMGGF YGEVNNDF+++KG G KKRV+TLRK +
Sbjct: 286 VGKGSDEGNASTDFDVSKKKITPMGGFVRYGEVNNDFILLKGSVPGVKKRVMTLRKSMFV 345
Query: 556 KKRQKKAHLMEIQL 569
K++ L +++L
Sbjct: 346 --HTKRSALEKVEL 357
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ D IK C RV+ ++ +QKKAHLMEIQ+NGGS++DK+ +A E
Sbjct: 144 NITQDLERIKKYCTVV--RVLAHTQISKTPLKQKKAHLMEIQVNGGSLSDKVDYAHGLFE 201
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+P+ + VF QDEMIDCI VTKG G++
Sbjct: 202 KPVEIDNVFEQDEMIDCIAVTKGHGYQ 228
>gi|302915465|ref|XP_003051543.1| 60S ribosomal protein L3 [Nectria haematococca mpVI 77-13-4]
gi|256732482|gb|EEU45830.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 391
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKEIVEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKANKKEIVEAVTIVDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC ++RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENNGA-SITRELERIKKYCTIVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+A+ ++ E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVAFGQELFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDEMID I VTKG GF G
Sbjct: 205 DISSIFEQDEMIDVIAVTKGHGFNG 229
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+A+ ++ E+P+ + +F QDEMID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVAFGQELFEKPVDISSIFEQDEMIDVIAVTKGHGFNGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++NA+T+ D+T+K+ITP+GGF YGEV NDF+M+KG G KKRV+TLRK
Sbjct: 290 DAEDNAATEIDVTKKTITPLGGFVRYGEVKNDFVMLKGSIPGVKKRVMTLRK 341
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+A+ ++ E+P+ + +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVAFGQELFEKPVDISSIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|50755665|ref|XP_414843.1| PREDICTED: ribosomal protein L3-like [Gallus gallus]
Length = 407
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/265 (61%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KFSAPRHG +GF P KRS RHRGKVK +PKDDP+KPVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHHKFSAPRHGHLGFLPHKRSRRHRGKVKTWPKDDPSKPVHLTAFMGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG +I+K+E VEAVTI+ETPPMV+VGV+GY++TP GLR+FKTV+AEH+S ECRRRFYKN
Sbjct: 62 RPGLRISKREEVEAVTIIETPPMVVVGVVGYIDTPKGLRNFKTVFAEHISDECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFAAMKKYCKVIRVIMHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+ W R+ LE+ I
Sbjct: 167 ---------------------QMKLLPLRQKKAHVMEIQLNGGTVAEKVDWVRERLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+Q+EMID IGVTKG G KG
Sbjct: 206 SVHSVFSQNEMIDVIGVTKGHGMKG 230
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+ W R+ LE+ I V VF+Q+EMID IGVTKG G
Sbjct: 168 MKLLPLRQKKAHVMEIQLNGGTVAEKVDWVRERLEKQISVHSVFSQNEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWH+KKLPRKTHKGLRKVACIGAWHP+RV ++VARAGQKGYHHRTELNKKI+R+
Sbjct: 228 MKGVTSRWHSKKLPRKTHKGLRKVACIGAWHPARVGYSVARAGQKGYHHRTELNKKIFRI 287
Query: 428 GAGIHTKDGKV 438
G GIH +DGKV
Sbjct: 288 GHGIHVEDGKV 298
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 115/150 (76%), Gaps = 13/150 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWH+KKLPRKTHKGLRKVACIGAWHP+RV ++VARAGQKGYHHRTEL
Sbjct: 221 GVTKGHGMKGVTSRWHSKKLPRKTHKGLRKVACIGAWHPARVGYSVARAGQKGYHHRTEL 280
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK + V+KNNAST+YD+TEK+ITP+GGFPHYGEVNNDFLM+KGC
Sbjct: 281 ---NKKIFRIGHGIHVEDGKVVKNNASTNYDVTEKTITPLGGFPHYGEVNNDFLMLKGCV 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+GPKKRV+TLRK L+ R++ +E++
Sbjct: 338 VGPKKRVLTLRKSLLVHTRRRAHEAIELKF 367
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+ W R+ LE
Sbjct: 145 QLEKDFAAMKKYC--KVIRVIMHTQMKLLPLRQKKAHVMEIQLNGGTVAEKVDWVRERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ I V VF+Q+EMID IGVTKG G K
Sbjct: 203 KQISVHSVFSQNEMIDVIGVTKGHGMK 229
>gi|328852642|gb|EGG01786.1| hypothetical protein MELLADRAFT_45021 [Melampsora larici-populina
98AG31]
Length = 388
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PRHGS GF P+KR+ARHRGKVK FP+DD TKPVHLTA +GYKAGMTHIVRE +
Sbjct: 2 SHRKWEHPRHGSTGFLPRKRAARHRGKVKSFPRDDKTKPVHLTAMLGYKAGMTHIVRELE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVTI+ETPPMVIVGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTIIETPPMVIVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK +KK + +IA++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTKYAKKHAES-STGSIARELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +A+ H E+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFAKSHFEKTF 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDE ID I VTKGKGF+G
Sbjct: 205 DVSSIFEQDENIDVIAVTKGKGFEG 229
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/117 (75%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +A+ H E+ V +F QDE ID I VTKGKGF+GVT
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFAKSHFEKTFDVSSIFEQDENIDVIAVTKGKGFEGVTH 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS+V FTVARAGQ GYHHRTELNKK++R+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSKVMFTVARAGQNGYHHRTELNKKVFRVGKG 289
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 90/116 (77%), Gaps = 8/116 (6%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V FTVARAGQ GYHHRTEL K +
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFTVARAGQNGYHHRTEL----NKKVFR 285
Query: 500 VIKN----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
V K NA+T++D T+K+ITPMGGF YG VNNDFLM+KG G KKRVITLRK
Sbjct: 286 VGKGGDEANATTEFDTTKKAITPMGGFVRYGVVNNDFLMLKGSVPGVKKRVITLRK 341
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
G + + I+ C RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +A+ H
Sbjct: 143 GSIARELERIRKYCTVV--RVLAHTQIRKTGLKQKKAHLMEIQVNGGSVADKVDFAKSHF 200
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
E+ V +F QDE ID I VTKGKGF+ H
Sbjct: 201 EKTFDVSSIFEQDENIDVIAVTKGKGFEGVTH 232
>gi|452988462|gb|EME88217.1| hypothetical protein MYCFIDRAFT_209740 [Pseudocercospora fijiensis
CIRAD86]
Length = 392
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR++RHRGKVK FPKDDP KPVHLTA +GYKAGM+ IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRASRHRGKVKSFPKDDPKKPVHLTAAMGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVT++ETPPM+++G++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKLHKKEIVEAVTVIETPPMMVIGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G K I +DL ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKHSEESG-KNITRDLERIKKYCTVVRVLAHTQISKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDEMIDCI VTKG GF+G
Sbjct: 205 EIDSIFEQDEMIDCIAVTKGHGFQG 229
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/135 (67%), Positives = 108/135 (80%), Gaps = 3/135 (2%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ + E+P+ + +F QDEMIDCI VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVEFGHGLFEKPVEIDSIFEQDEMIDCIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G +
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG--S 290
Query: 434 KDGKVSVTSRWHTKK 448
DG + T H+KK
Sbjct: 291 DDGNAT-TDFDHSKK 304
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 93/129 (72%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
NA+TD+D ++K ITPMGGF YGEV NDF+M+KG G KKRV+TLRK + +
Sbjct: 290 SDDGNATTDFDHSKKQITPMGGFVRYGEVKNDFVMLKGSVPGVKKRVMTLRKSMFVHTSR 349
Query: 560 KKAHLMEIQ 568
+ +E++
Sbjct: 350 RALEKVELK 358
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C RV+ ++ +QKKAHLMEIQ+NGGS+ADK+ + E+
Sbjct: 145 ITRDLERIKKYCT--VVRVLAHTQISKTPLKQKKAHLMEIQVNGGSIADKVEFGHGLFEK 202
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
P+ + +F QDEMIDCI VTKG GF+
Sbjct: 203 PVEIDSIFEQDEMIDCIAVTKGHGFQ 228
>gi|322705242|gb|EFY96829.1| 60S ribosomal protein L3 [Metarhizium anisopliae ARSEF 23]
Length = 391
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKE+VEAVT+++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKANKKEVVEAVTVVDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSESSG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+++ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVSFGQDLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDEMID I VTKG GF G
Sbjct: 205 SIDTIFEQDEMIDVIAVTKGHGFNG 229
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+++ + E+P+ + +F QDEMID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSVADKVSFGQDLFEKPVSIDTIFEQDEMIDVIAVTKGHGFNGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++AST+ D+T+K ITP+GGF YGEVNNDF+M+KG G KKRV+TLRK
Sbjct: 290 DAEDSASTEIDVTKKKITPLGGFVRYGEVNNDFVMVKGSIPGVKKRVMTLRK 341
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+++ + E+P+ + +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVSFGQDLFEKPVSIDTIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|322695627|gb|EFY87432.1| 60S ribosomal protein L3 [Metarhizium acridum CQMa 102]
Length = 391
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKE+VEAVT+++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKANKKEVVEAVTVVDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSESSG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+++ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVSFGQDLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDEMID I VTKG GF G
Sbjct: 205 SIDTIFEQDEMIDVIAVTKGHGFNG 229
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+++ + E+P+ + +F QDEMID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSVADKVSFGQDLFEKPVSIDTIFEQDEMIDVIAVTKGHGFNGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++AST+ D+T+K ITP+GGF YGEVNNDF+M+KG G KKRV+TLRK
Sbjct: 290 DAEDSASTEVDVTKKKITPLGGFVRYGEVNNDFVMLKGSIPGVKKRVMTLRK 341
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+++ + E+P+ + +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVSFGQDLFEKPVSIDTIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|361126129|gb|EHK98144.1| putative 60S ribosomal protein L3 [Glarea lozoyensis 74030]
Length = 391
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 189/265 (71%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTATLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVT++ETPP+++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKSHKKEVVEAVTVIETPPVIVVGLVGYIETPRGLRSLTTVWAEHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ GK I ++ ++AKYC V+RV+AHTQ +Q L
Sbjct: 122 WYKSKKKAFTKYAKKYAS--GKNEIDREFARIAKYCSVVRVLAHTQIRQTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSV DK+++A+ E+P+
Sbjct: 172 ----------------------------KQKKAHLMEIQVNGGSVEDKVSFAKGLFEKPV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDEMID I VTKG GF G
Sbjct: 204 EISSIFEQDEMIDVIAVTKGHGFSG 228
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 108/135 (80%), Gaps = 3/135 (2%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSV DK+++A+ E+P+ + +F QDEMID I VTKG GF GVTS
Sbjct: 172 KQKKAHLMEIQVNGGSVEDKVSFAKGLFEKPVEISSIFEQDEMIDVIAVTKGHGFSGVTS 231
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G T
Sbjct: 232 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKIYRVGKG--T 289
Query: 434 KDGKVSVTSRWHTKK 448
+G + T H+KK
Sbjct: 290 DEGNAT-TEFDHSKK 303
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 95/133 (71%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 225 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKIYR 284
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ NA+T++D ++K ITPMGGF YGEV NDFL++KG G KKRV+TLRK +
Sbjct: 285 VGKGTDEGNATTEFDHSKKQITPMGGFVRYGEVKNDFLIVKGSVPGVKKRVMTLRKSMFV 344
Query: 556 KKRQKKAHLMEIQ 568
+K ++++
Sbjct: 345 HTSRKALEKVDLK 357
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E++ +F I C RV+ +++ +QKKAHLMEIQ+NGGSV DK+++A+ E
Sbjct: 143 EIDREFARIAKYC--SVVRVLAHTQIRQTPLKQKKAHLMEIQVNGGSVEDKVSFAKGLFE 200
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGF 612
+P+ + +F QDEMID I VTKG GF
Sbjct: 201 KPVEISSIFEQDEMIDVIAVTKGHGF 226
>gi|405123316|gb|AFR98081.1| large subunit ribosomal protein L3 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PRHGS+ F P+KR+ARHRG+ K FPKDDP KPVHLTA +GYKAGMTHIVR+ D
Sbjct: 2 SHRKYEEPRHGSLAFLPRKRAARHRGRCKAFPKDDPKKPVHLTAVMGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPMV+VG +GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVIETPPMVVVGAVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G ++A++ ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYRSKKKAFTRYAKKHSENSG-ASVAREFERIKKYCTVVRVLAHTQISKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR H E+ +
Sbjct: 173 ----------------------------QQKKAHLMEIQVNGGSVADKVDFARSHFEKTV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG VF QDE ID IGV+KG G++G
Sbjct: 205 DVGSVFEQDECIDIIGVSKGHGYEG 229
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/123 (67%), Positives = 99/123 (80%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR H E+ + VG VF QDE ID IGV+KG G++GVT+
Sbjct: 173 QQKKAHLMEIQVNGGSVADKVDFARSHFEKTVDVGSVFEQDECIDIIGVSKGHGYEGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW T +LPRKTH+GLRKVACIGAWHPS V F+VARAGQ+GYH RT +N KIYR+ G
Sbjct: 233 RWGTTRLPRKTHRGLRKVACIGAWHPSNVMFSVARAGQRGYHSRTSMNHKIYRIANGASG 292
Query: 434 KDG 436
G
Sbjct: 293 SSG 295
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW T +LPRKTH+GLRKVACIGAWHPS V F+VARAGQ+GYH RT +
Sbjct: 220 GVSKGHGYEGVTARWGTTRLPRKTHRGLRKVACIGAWHPSNVMFSVARAGQRGYHSRTSM 279
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + ++ ST++DLT+K ITPMGGF YG V NDF+MIKG C+GP KR++TL
Sbjct: 280 NHKIYRIANGASGSSGSTEFDLTKKDITPMGGFVRYGVVKNDFVMIKGSCVGPVKRIVTL 339
Query: 550 RKMKLLKKRQKKAHLMEIQL 569
RK L+ +AH ++ L
Sbjct: 340 RKA--LRTHTSRAHTEKVSL 357
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
V +F IK C RV+ ++ +QKKAHLMEIQ+NGGSVADK+ +AR H E+
Sbjct: 145 VAREFERIKKYCT--VVRVLAHTQISKTGLQQKKAHLMEIQVNGGSVADKVDFARSHFEK 202
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ VG VF QDE ID IGV+KG G++
Sbjct: 203 TVDVGSVFEQDECIDIIGVSKGHGYE 228
>gi|149620465|ref|XP_001511933.1| PREDICTED: 60S ribosomal protein L3-like [Ornithorhynchus anatinus]
Length = 342
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRG+VK +PKDDP KPVHLTAF+GYKAGMTH +RE
Sbjct: 9 SHRKFSAPRHGHLGFLPHKRSRRHRGRVKSWPKDDPKKPVHLTAFLGYKAGMTHTLREVH 68
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG K++K+E VEAVTI+ETPPMV+VGV+GYV+TP GLR+FKT++AEHLS ECRRRFYKN
Sbjct: 69 RPGLKVSKREEVEAVTIVETPPMVVVGVVGYVDTPRGLRNFKTIFAEHLSDECRRRFYKN 128
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYCK+IRVI HT
Sbjct: 129 WHKSKKKAFTKYCKKWQDADGKKRLEKDFASMKKYCKIIRVIVHT--------------- 173
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKA +ME+QLNGGSV+DK+ WAR HLE+ +
Sbjct: 174 ---------------------QMKLLAFRQKKADVMEVQLNGGSVSDKVDWARGHLEKAV 212
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q+EM+D I VTKG+G KG
Sbjct: 213 PVQAVFSQNEMVDVIAVTKGRGMKG 237
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKA +ME+QLNGGSV+DK+ WAR HLE+ +PV VF+Q+EM+D I VTKG+G
Sbjct: 175 MKLLAFRQKKADVMEVQLNGGSVSDKVDWARGHLEKAVPVQAVFSQNEMVDVIAVTKGRG 234
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWH KKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTE+NKKIYR+
Sbjct: 235 MKGVTSRWHAKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTEINKKIYRL 294
Query: 428 GAGIHTKDGKV 438
G GIH +DG+V
Sbjct: 295 GRGIHVEDGQV 305
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 72/94 (76%), Gaps = 11/94 (11%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWH KKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTE + KK
Sbjct: 234 GMKGVTSRWHAKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTE--INKKI 291
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMG 520
Y V++NNAST+YD+T KSITP+G
Sbjct: 292 YRLGRGIHVEDGQVVRNNASTNYDITNKSITPLG 325
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MKLL RQKKA +ME+QLNGGSV+DK+ WAR HLE+
Sbjct: 153 LEKDFASMKKYCK--IIRVIVHTQMKLLAFRQKKADVMEVQLNGGSVSDKVDWARGHLEK 210
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PV VF+Q+EM+D I VTKG+G K
Sbjct: 211 AVPVQAVFSQNEMVDVIAVTKGRGMK 236
>gi|296081197|emb|CBI18223.3| unnamed protein product [Vitis vinifera]
Length = 449
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 161/284 (56%), Positives = 200/284 (70%), Gaps = 38/284 (13%)
Query: 20 GSMGFYPKKRSARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVH 79
G +G P + R R+ SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+KP
Sbjct: 46 GFLGSDPMENLRRRRM---SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCR 102
Query: 80 LTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSF 139
LTAF+GYKAGMTHIVRE ++PGSK++KKE EAVTI+ETPPMVIVGV+ YV+TP GLRS
Sbjct: 103 LTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSL 162
Query: 140 KTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRV 199
TVWA+HLS+E +RRFYKNW KS++KAFTK SK+++ + GKK+I L KM KY VIRV
Sbjct: 163 NTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRV 222
Query: 200 IAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLN 259
+AHTQ + +MK LK QKKAHLMEIQ+N
Sbjct: 223 LAHTQIR---------------------------------KMKGLK--QKKAHLMEIQVN 247
Query: 260 GGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
GG++A K+ +A E+ +PV +F +DEMID IGVTKGKG++G
Sbjct: 248 GGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTKGKGYEG 291
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 98/115 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++A K+ +A E+ +PV +F +DEMID IGVTKGKG++GV +
Sbjct: 235 KQKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVT 294
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++G
Sbjct: 295 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLG 349
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 110/161 (68%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 282 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 340
Query: 490 FLCKKKYLSMVIK---NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y I+ + A T++D TEK ITPMGGFPHYG V +D++MIKGCC+GPKKRV
Sbjct: 341 -MNKKIYKLGKIEQESHTALTEFDRTEKDITPMGGFPHYGVVKDDYVMIKGCCVGPKKRV 399
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LLK+ + A L EI+L + K R Q
Sbjct: 400 VTLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 438
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 228 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTK 285
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 286 GKGYEGVV 293
>gi|170111497|ref|XP_001886952.1| 60S ribosomal protein L3 [Laccaria bicolor S238N-H82]
gi|164637995|gb|EDR02275.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 388
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAVMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPM++VG++GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVIETPPMIVVGLVGYVETPRGLRTLTTVWASHLSDEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K++A++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAED-GGKSVARELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQLNGGS+ADK+ + + E+P+
Sbjct: 173 ----------------------------SQKKAHLMEIQLNGGSIADKVEFGQALFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDE +D I VTKG GF+G
Sbjct: 205 EVSTVFEQDECVDVIAVTKGHGFEG 229
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 99/116 (85%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQLNGGS+ADK+ + + E+P+ V VF QDE +D I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQLNGGSIADKVEFGQALFEKPVEVSTVFEQDECVDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 98/130 (75%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NAST+ D+T KSITPMGGFPHYG V NDFLM+KG G KKRVIT+RK ++ +
Sbjct: 290 TDEANASTESDITNKSITPMGGFPHYGIVKNDFLMLKGSIPGTKKRVITIRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L ++QL
Sbjct: 350 RD--LEKVQL 357
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQLNGGS+ADK+ + + E+P+ V VF QDE +D I
Sbjct: 160 RVLAHTQIRKTGLSQKKAHLMEIQLNGGSIADKVEFGQALFEKPVEVSTVFEQDECVDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|449269423|gb|EMC80192.1| 60S ribosomal protein L3-like protein, partial [Columba livia]
Length = 407
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +PKDDP+KPVHLTAF+GYKAGMTH VRE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPKDDPSKPVHLTAFLGYKAGMTHTVREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG K++K+E VEAVTI+ETPPMV+VGV+GYVETP GLR+FKTV+AEH+S ECRRRFYKN
Sbjct: 62 RPGLKLSKREEVEAVTIIETPPMVVVGVVGYVETPKGLRNFKTVFAEHISDECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GK+ + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKRQLEKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+V +K+ W R+ LE+ +
Sbjct: 167 ---------------------QMKLLPLRQKKAHVMEIQLNGGTVPEKVDWVRERLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+Q+EMID IGVTKG G KG
Sbjct: 206 SVHSVFSQNEMIDVIGVTKGHGMKG 230
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+V +K+ W R+ LE+ + V VF+Q+EMID IGVTKG G
Sbjct: 168 MKLLPLRQKKAHVMEIQLNGGTVPEKVDWVRERLEKQVSVHSVFSQNEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 MKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIH +DGKV
Sbjct: 288 GHGIHVEDGKV 298
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTE
Sbjct: 221 GVTKGHGMKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
L KK Y V+KNNAST YD+TEK+ITP+GGFPHYGEVNNDFLM+KGC +
Sbjct: 280 -LNKKIYRIGHGIHVEDGKVVKNNASTHYDVTEKTITPLGGFPHYGEVNNDFLMLKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L+ ++ +E++
Sbjct: 339 GTKKRVLTLRKSLLVHTSRRAQENIELKF 367
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+V +K+ W R+ LE
Sbjct: 145 QLEKDFAAMKKYCKVI--RVIVHTQMKLLPLRQKKAHVMEIQLNGGTVPEKVDWVRERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ + V VF+Q+EMID IGVTKG G K
Sbjct: 203 KQVSVHSVFSQNEMIDVIGVTKGHGMK 229
>gi|390601087|gb|EIN10481.1| 60S ribosomal protein L3 [Punctularia strigosozonata HHB-11173 SS5]
Length = 388
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAVMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVTI+ETPPM++VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTIVETPPMIVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K++ ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKAAEDNG-KSVQRELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGS+ADK+ +A E+PI
Sbjct: 173 ----------------------------AQKKAHLMEIQVNGGSIADKVDFAHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDE++D I VTKG GF+G
Sbjct: 205 EVNSVFEQDEVVDVIAVTKGHGFEG 229
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 105/128 (82%), Gaps = 2/128 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF QDE++D I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSIADKVDFAHGLFEKPIEVNSVFEQDEVVDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G +
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRVGSG--SD 291
Query: 435 DGKVSVTS 442
+G S S
Sbjct: 292 EGNASTES 299
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 99/130 (76%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRVGSG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NAST+ D+T+K+ITPMGGFPHYG V ND+LM+KG G KKRVIT+RK ++ +
Sbjct: 290 SDEGNASTESDVTKKTITPMGGFPHYGIVKNDYLMLKGSIPGTKKRVITIRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L ++QL
Sbjct: 350 RD--LEKVQL 357
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 44/59 (74%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF QDE++D I VTKG GF+ H
Sbjct: 174 QKKAHLMEIQVNGGSIADKVDFAHGLFEKPIEVNSVFEQDEVVDVIAVTKGHGFEGVTH 232
>gi|225460636|ref|XP_002265125.1| PREDICTED: 60S ribosomal protein L3-like [Vitis vinifera]
Length = 397
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/270 (58%), Positives = 195/270 (72%), Gaps = 35/270 (12%)
Query: 34 RVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHI 93
R ++ SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+KP LTAF+GYKAGMTHI
Sbjct: 5 RRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHI 64
Query: 94 VREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRR 153
VRE ++PGSK++KKE EAVTI+ETPPMVIVGV+ YV+TP GLRS TVWA+HLS+E +R
Sbjct: 65 VREVEKPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSLNTVWAQHLSEEVKR 124
Query: 154 RFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQN 213
RFYKNW KS++KAFTK SK+++ + GKK+I L KM KY VIRV+AHTQ +
Sbjct: 125 RFYKNWCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRVLAHTQIR------- 177
Query: 214 QQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 273
+MK LK QKKAHLMEIQ+NGG++A K+ +A
Sbjct: 178 --------------------------KMKGLK--QKKAHLMEIQVNGGTIAQKVDYAYGF 209
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+ +PV +F +DEMID IGVTKGKG++G
Sbjct: 210 FEKQVPVDAIFQKDEMIDIIGVTKGKGYEG 239
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +PV +F +DEMID IGVTKGKG
Sbjct: 179 MKGLK--QKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTKGKG 236
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 237 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKL 296
Query: 428 G 428
G
Sbjct: 297 G 297
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 230 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 288
Query: 490 FLCKKKYLSMVIK---NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y I+ + A T++D TEK ITPMGGFPHYG V +D++MIKGCC+GPKKRV
Sbjct: 289 -MNKKIYKLGKIEQESHTALTEFDRTEKDITPMGGFPHYGVVKDDYVMIKGCCVGPKKRV 347
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 348 VTLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGR 381
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 176 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTK 233
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 234 GKGYEGVV 241
>gi|119481241|ref|XP_001260649.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181]
gi|119408803|gb|EAW18752.1| transcriptional corepressor Cyc8, putative [Neosartorya fischeri
NRRL 181]
Length = 392
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHAEESG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF+G
Sbjct: 205 EIDSIFEKDEMIDVIAVTKGHGFQG 229
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKG 289
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTS---CNHKVFRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++M+KG G KKRV+TLRK
Sbjct: 287 GKGSDEGNASTEFDISKKQITPMGGFVRYGEVKNDYVMVKGSVPGVKKRVMTLRK 341
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 219
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 220 AVTKGHGFQ 228
>gi|360044569|emb|CCD82117.1| putative 60s ribosomal protein L3 [Schistosoma mansoni]
Length = 419
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 189/265 (71%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++E +RRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEEFKRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS+++AF K+SKKW + G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKRAFLKSSKKWLCEAGLAQIKRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKK+H+ME+Q+NGG+V+ K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKSHIMEVQVNGGTVSQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+QDEMID IGVTKGKGFKG
Sbjct: 206 SVSNVFSQDEMIDVIGVTKGKGFKG 230
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/244 (57%), Positives = 164/244 (67%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKK+H+ME+Q+NGG+V+ K+ W RQH E+ I V VF+QDEMID IGVTKGKG
Sbjct: 168 MRLMKHRQKKSHIMEVQVNGGTVSQKVDWIRQHFEKQISVSNVFSQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIY++
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYKI 287
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A
Sbjct: 288 GMGLQA--------------------------------------QLEVAKAEASKDE--- 306
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
K K K NAST++DLT K+ITPMGGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 307 -----KDKNAVPKPKGNASTEFDLTAKNITPMGGFPHYGEVRNDYVMIKGCCMGPRKRVI 361
Query: 548 TLRK 551
TLRK
Sbjct: 362 TLRK 365
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
++ D IK C R I +M+L+K RQKK+H+ME+Q+NGG+V+ K+ W RQH
Sbjct: 144 AQIKRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKSHIMEVQVNGGTVSQKVDWIRQHF 201
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
E+ I V VF+QDEMID IGVTKGKGFK
Sbjct: 202 EKQISVSNVFSQDEMIDVIGVTKGKGFK 229
>gi|256079531|ref|XP_002576040.1| 60S ribosomal protein L3 [Schistosoma mansoni]
Length = 419
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 189/265 (71%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++E +RRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEEFKRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS+++AF K+SKKW + G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKRAFLKSSKKWLCEAGLAQIKRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKK+H+ME+Q+NGG+V+ K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKSHIMEVQVNGGTVSQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+QDEMID IGVTKGKGFKG
Sbjct: 206 SVSNVFSQDEMIDVIGVTKGKGFKG 230
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 141/244 (57%), Positives = 164/244 (67%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKK+H+ME+Q+NGG+V+ K+ W RQH E+ I V VF+QDEMID IGVTKGKG
Sbjct: 168 MRLMKHRQKKSHIMEVQVNGGTVSQKVDWIRQHFEKQISVSNVFSQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIY++
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYKI 287
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A
Sbjct: 288 GMGLQA--------------------------------------QLEVAKAEASKDD--- 306
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
K K K NAST++DLT K+ITPMGGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 307 -----KDKNAVPKPKGNASTEFDLTAKNITPMGGFPHYGEVRNDYVMIKGCCMGPRKRVI 361
Query: 548 TLRK 551
TLRK
Sbjct: 362 TLRK 365
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
++ D IK C R I +M+L+K RQKK+H+ME+Q+NGG+V+ K+ W RQH
Sbjct: 144 AQIKRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKSHIMEVQVNGGTVSQKVDWIRQHF 201
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
E+ I V VF+QDEMID IGVTKGKGFK
Sbjct: 202 EKQISVSNVFSQDEMIDVIGVTKGKGFK 229
>gi|395328899|gb|EJF61289.1| 60S ribosomal protein L3 [Dichomitus squalens LYAD-421 SS1]
Length = 388
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ +
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDPKKPVHLTAILGYKAGMTHVVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVTI+ETPP+++VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTIVETPPLIVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K+IA++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAED-GGKSIARELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSV DK+ +A E+P+
Sbjct: 173 ----------------------------SQKKAHLMEIQVNGGSVVDKVEFAHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDE++D I VTKG GF+G
Sbjct: 205 EVSSVFEQDEVVDVIAVTKGHGFEG 229
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 101/125 (80%), Gaps = 2/125 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSV DK+ +A E+P+ V VF QDE++D I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSVVDKVEFAHGLFEKPVEVSSVFEQDEVVDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGRG--ED 291
Query: 435 DGKVS 439
DG S
Sbjct: 292 DGNAS 296
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 98/130 (75%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL +
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGRG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
NAST++D+T+K+ITP+GGFPHYG V ND+LM+KG G KKRVIT+RK ++ +
Sbjct: 290 EDDGNASTEHDITKKTITPLGGFPHYGIVKNDYLMLKGSIPGTKKRVITIRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L ++QL
Sbjct: 350 RD--LEKVQL 357
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGSV DK+ +A E+P+ V VF QDE++D I
Sbjct: 160 RVLAHTQIRKTGLSQKKAHLMEIQVNGGSVVDKVEFAHGLFEKPVEVSSVFEQDEVVDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|71001672|ref|XP_755517.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293]
gi|83305621|sp|Q8NKF4.2|RL3_ASPFU RecName: Full=60S ribosomal protein L3; AltName: Allergen=Asp f 23
gi|66853155|gb|EAL93479.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293]
gi|159129584|gb|EDP54698.1| 60S ribosomal protein L3 [Aspergillus fumigatus A1163]
Length = 392
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF+G
Sbjct: 205 EIDSIFEKDEMIDVIAVTKGHGFQG 229
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKG 289
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTS---CNHKVFRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++M+KG G KKRV+TLRK
Sbjct: 287 GKGSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRK 341
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 219
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 220 AVTKGHGFQ 228
>gi|342874075|gb|EGU76148.1| hypothetical protein FOXB_13320 [Fusarium oxysporum Fo5176]
Length = 391
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKEIVEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKANKKEIVEAVTIVDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENNGA-SITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVSFGQELFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDEMID + VTKG GF+G
Sbjct: 205 DISSIFEQDEMIDVVAVTKGHGFEG 229
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 102/117 (87%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+ + +F QDEMID + VTKG GF+GVT+
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVSFGQELFEKPVDISSIFEQDEMIDVVAVTKGHGFEGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ+GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQRGYHHRTSVNHKIYRIGKG 289
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 90/112 (80%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ+GYHHRT + +
Sbjct: 230 VTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQRGYHHRTSVNHKIYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+NA+T+ D+T+K+ITP+GGF YGEVNNDF+M+KG G KKRV+TLRK
Sbjct: 290 DADDNAATEIDVTKKTITPLGGFVRYGEVNNDFVMVKGSIPGTKKRVMTLRK 341
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 52/69 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+ + +F QDEMID +
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSIADKVSFGQELFEKPVDISSIFEQDEMIDVV 219
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 220 AVTKGHGFE 228
>gi|346319212|gb|EGX88814.1| 60S ribosomal protein L3 [Cordyceps militaris CM01]
Length = 475
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/271 (55%), Positives = 190/271 (70%), Gaps = 37/271 (13%)
Query: 33 HRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTH 92
H K SHRK PRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT
Sbjct: 79 HLADKMSHRKHEEPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTT 138
Query: 93 IVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECR 152
IVR++DRPG+K NKKE+VEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +
Sbjct: 139 IVRDSDRPGAKSNKKEVVEAVTIVDTPPMIVVGLVGYIETPRGLRSLNTVWAEHLSDELK 198
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
RRFYKNWYKS++KAFTK +KK + G +IA++L +M KYC VIR++AHTQ ++ L
Sbjct: 199 RRFYKNWYKSKKKAFTKYAKKHSEASG-ASIARELERMKKYCTVIRILAHTQIRKTPL-- 255
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
+QKKAHLMEIQ+NGGS+ADK+ + +
Sbjct: 256 ----------------------------------KQKKAHLMEIQVNGGSIADKVDFGKN 281
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+P+ + +F QDEMID I VTKG GF G
Sbjct: 282 LFEKPVSIDSIFEQDEMIDVIAVTKGHGFTG 312
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ + + E+P+ + +F QDEMID I VTKG GF GVT
Sbjct: 256 KQKKAHLMEIQVNGGSIADKVDFGKNLFEKPVSIDSIFEQDEMIDVIAVTKGHGFTGVTK 315
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N K+YR+G
Sbjct: 316 RWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQDGYHHRTSVNHKVYRIG 370
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 89/116 (76%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT + +
Sbjct: 309 GFTGVTKRWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQDGYHHRTSVNHKVYR 368
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++AST+ D+T+KSITP+GGF YG V+NDF+M+KG G KKRV+TLRK
Sbjct: 369 IGKAGAEDSASTEMDITKKSITPLGGFVRYGTVSNDFVMVKGSIPGVKKRVMTLRK 424
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R++ +++ +QKKAHLMEIQ+NGGS+ADK+ + + E+P+ + +F QDEMID I
Sbjct: 243 RILAHTQIRKTPLKQKKAHLMEIQVNGGSIADKVDFGKNLFEKPVSIDSIFEQDEMIDVI 302
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 303 AVTKGHGF 310
>gi|336373266|gb|EGO01604.1| hypothetical protein SERLA73DRAFT_132009 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386114|gb|EGO27260.1| 60S ribosomal protein L3 [Serpula lacrymans var. lacrymans S7.9]
Length = 388
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FP+DDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPRDDPKKPVHLTATMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVTI+ETPP+++VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTIVETPPLIVVGVVGYVETPRGLRTLTTVWASHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + GK T A++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAEDNGKST-ARELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGS+ADK+ ++ E+P+
Sbjct: 173 ----------------------------SQKKAHLMEIQVNGGSIADKVEFSHNLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDE ID I VTKG GF+G
Sbjct: 205 EVTSVFEQDENIDVIAVTKGHGFEG 229
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 104/128 (81%), Gaps = 2/128 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGS+ADK+ ++ E+P+ V VF QDE ID I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSIADKVEFSHNLFEKPVEVTSVFEQDENIDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+GAG T
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGAG--TD 291
Query: 435 DGKVSVTS 442
DG S S
Sbjct: 292 DGNASTES 299
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 98/130 (75%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + +
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGAG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
NAST+ D+T+K+ITPMGGFPHYG V ND+LM+KG G KKRVITLRK ++ +
Sbjct: 290 TDDGNASTESDITKKAITPMGGFPHYGIVKNDYLMLKGSIPGTKKRVITLRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L ++QL
Sbjct: 350 RD--LEKVQL 357
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGS+ADK+ ++ E+P+ V VF QDE ID I
Sbjct: 160 RVLAHTQIRKTGLSQKKAHLMEIQVNGGSIADKVEFSHNLFEKPVEVTSVFEQDENIDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|147833564|emb|CAN63848.1| hypothetical protein VITISV_039858 [Vitis vinifera]
Length = 389
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 156/265 (58%), Positives = 192/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+KP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+ YV+TP GLRS TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SK+++ + GKK+I L KM KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIAQKVDYAYGFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +F +DEMID IGVTKGKG++G
Sbjct: 207 PVDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +PV +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 110/161 (68%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVIK---NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y I+ + A T++D TEK ITPMGGFPHYG V +D++MIKGCC+GPKKRV
Sbjct: 281 -MNKKIYKLGKIEQESHTALTEFDRTEKDITPMGGFPHYGVVKDDYVMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LLK+ + A L EI+L + K R Q
Sbjct: 340 VTLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|388855824|emb|CCF50608.1| probable RPL3-60s ribosomal protein l3 [Ustilago hordei]
Length = 391
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA IGYKAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPKKPVHLTAMIGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVEAVT++ETPPMV VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKKEIVEAVTVVETPPMVAVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK +KK + G +I+++L ++ KYC V+R++AHTQ ++ L
Sbjct: 122 WYRSKKKAFTKYAKKHSENNGA-SISRELERIKKYCTVVRLLAHTQVRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLME+Q+NGGSVADK+ +A++H E+
Sbjct: 173 ----------------------------KQKKAHLMEVQINGGSVADKVDFAKEHFEKTF 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+E++D I VTKG G++G
Sbjct: 205 DVKSVFEQNEIVDVIAVTKGHGYEG 229
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 106/133 (79%), Gaps = 4/133 (3%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVADK+ +A++H E+ V VF Q+E++D I VTKG G++GVT+
Sbjct: 173 KQKKAHLMEVQINGGSVADKVDFAKEHFEKTFDVKSVFEQNEIVDVIAVTKGHGYEGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTH+GLRK+ACIGAWHP+ V FTVAR+GQ GYHHRTE+ KKIYR+ G
Sbjct: 233 RWGTKKLPRKTHRGLRKIACIGAWHPANVMFTVARSGQDGYHHRTEIGKKIYRIANG--- 289
Query: 434 KDGKVSVTSRWHT 446
D K S ++ + T
Sbjct: 290 -DDKTSGSTDFDT 301
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 92/116 (79%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTH+GLRK+ACIGAWHP+ V FTVAR+GQ GYHHRTE+ +
Sbjct: 226 GYEGVTARWGTKKLPRKTHRGLRKIACIGAWHPANVMFTVARSGQDGYHHRTEIGKKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K + STD+D TEK+ITP+GGFPHYG+V NDF+MIKG C G KKRV+TLRK
Sbjct: 286 IANGDDKTSGSTDFDTTEKNITPLGGFPHYGQVKNDFVMIKGSCPGVKKRVLTLRK 341
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 45/56 (80%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+QKKAHLME+Q+NGGSVADK+ +A++H E+ V VF Q+E++D I VTKG G++
Sbjct: 173 KQKKAHLMEVQINGGSVADKVDFAKEHFEKTFDVKSVFEQNEIVDVIAVTKGHGYE 228
>gi|281341592|gb|EFB17176.1| hypothetical protein PANDA_008982 [Ailuropoda melanoleuca]
Length = 407
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 196/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSRPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +DL M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDADGKKQLQRDLAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 288 GRGLHKEDGKV 298
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 108/143 (75%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHKEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRQALENIELKF 367
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I
Sbjct: 161 RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVI 220
Query: 605 GVTKGKGFK 613
VTKG+G K
Sbjct: 221 AVTKGRGVK 229
>gi|396472938|ref|XP_003839232.1| similar to 60S ribosomal protein L3 [Leptosphaeria maculans JN3]
gi|312215801|emb|CBX95753.1| similar to 60S ribosomal protein L3 [Leptosphaeria maculans JN3]
Length = 392
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGM+ IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPPM+ VG++GY+ETP GLRS TVWAEHLS E +RRFY+N
Sbjct: 62 RPGAKLHKKEIVEAVTIIETPPMIAVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I +L +M KYC VIRV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKHSENSG-ASITAELERMKKYCTVIRVLAHTQISKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+++A E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVSYAHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +EMID I VTKGKG+ G
Sbjct: 205 EISSIFEANEMIDVIAVTKGKGYNG 229
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+++A E+PI + +F +EMID I VTKGKG+ GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVSYAHGLFEKPIEISSIFEANEMIDVIAVTKGKGYNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 90/116 (77%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GYNGVTSRWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQMGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV NDFL++KG C G KKRV+TLRK
Sbjct: 286 IGKGEDEGNASTEFDVSKKQITPMGGFVRYGEVKNDFLLLKGNCPGVKKRVMTLRK 341
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLMEIQ+NGGS+ADK+++A E+PI + +F +EMID I
Sbjct: 160 RVLAHTQISKTPLKQKKAHLMEIQVNGGSIADKVSYAHGLFEKPIEISSIFEANEMIDVI 219
Query: 605 GVTKGKGF 612
VTKGKG+
Sbjct: 220 AVTKGKGY 227
>gi|334333850|ref|XP_001366065.2| PREDICTED: 60S ribosomal protein L3-like [Monodelphis domestica]
Length = 431
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 161/267 (60%), Positives = 195/267 (73%), Gaps = 36/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
+ SHRKFSAPRHG +GF P+KRS RHRGKVK +P+DDP+KPVHLTAF+GYKAGMTH +RE
Sbjct: 23 RISHRKFSAPRHGHLGFLPQKRSRRHRGKVKTWPRDDPSKPVHLTAFLGYKAGMTHTLRE 82
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
RPG KI+K+E VEAVTI+ETPP+++VG++GYV TP GLRSFKT++AEHLS ECRRRFY
Sbjct: 83 VHRPGLKISKREEVEAVTIVETPPVIVVGIVGYVATPRGLRSFKTIFAEHLSDECRRRFY 142
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWYKS++KAFTKA +KW+D GKK + +D M KYCKVIRVI HT
Sbjct: 143 KNWYKSKKKAFTKACQKWRDDDGKKRLQKDFASMKKYCKVIRVIVHT------------- 189
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
QMKLL RQKKAH+MEIQLNGG++A+K+ WAR LE+
Sbjct: 190 -----------------------QMKLLPFRQKKAHIMEIQLNGGTIAEKVEWARARLEK 226
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF+Q E+ID I VTKG+G KG
Sbjct: 227 QVSVHTVFSQSEVIDVIAVTKGRGMKG 253
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 114/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG++A+K+ WAR LE+ + V VF+Q E+ID I VTKG+G
Sbjct: 191 MKLLPFRQKKAHIMEIQLNGGTIAEKVEWARARLEKQVSVHTVFSQSEVIDVIAVTKGRG 250
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWH KKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTELNKKIYR+
Sbjct: 251 MKGVTSRWHAKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTELNKKIYRI 310
Query: 428 GAGIHTKDGKV 438
G GIH KDGKV
Sbjct: 311 GHGIHVKDGKV 321
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 109/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWH KKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTE L KK
Sbjct: 250 GMKGVTSRWHAKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTE--LNKKI 307
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 308 YRIGHGIHVKDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 367
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ + ++ +E++
Sbjct: 368 ITLRKSLLVHRSRRALENIELKF 390
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MKLL RQKKAH+MEIQLNGG++A+K+ WAR LE+
Sbjct: 169 LQKDFASMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEIQLNGGTIAEKVEWARARLEK 226
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ V VF+Q E+ID I VTKG+G K
Sbjct: 227 QVSVHTVFSQSEVIDVIAVTKGRGMK 252
>gi|301769703|ref|XP_002920231.1| PREDICTED: 60S ribosomal protein L3-like [Ailuropoda melanoleuca]
Length = 444
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 196/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 39 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSRPVHLTAFLGYKAGMTHTLREVH 98
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 99 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 158
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +DL M KYCKVIRVI HT
Sbjct: 159 WHKSKKKAFTKACKRWRDADGKKQLQRDLAAMKKYCKVIRVIVHT--------------- 203
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 204 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 242
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 243 PVHSVFSQSEVIDVIAVTKGRGVKG 267
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 205 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 264
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 265 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 324
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 325 GRGLHKEDGKV 335
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 108/143 (75%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 264 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 321
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 322 YRIGRGLHKEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 381
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 382 ITLRKSLLVHHSRQALENIELKF 404
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I
Sbjct: 198 RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVI 257
Query: 605 GVTKGKGFK 613
VTKG+G K
Sbjct: 258 AVTKGRGVK 266
>gi|351711301|gb|EHB14220.1| 60S ribosomal protein L3-like protein [Heterocephalus glaber]
Length = 407
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSRPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT+++EHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFSEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WYKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 288 GRGLHMEDGKL 298
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNA+T YD+T+KSITP+GGFPHYGEVNND++M+KGC G KKRV
Sbjct: 285 YRIGRGLHMEDGKLVKNNAATSYDVTDKSITPLGGFPHYGEVNNDYIMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK LL ++ +E++
Sbjct: 345 ITLRKSLLLHHSRRAVENIELKF 367
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|384497998|gb|EIE88489.1| 60S ribosomal protein L3 [Rhizopus delemar RA 99-880]
Length = 387
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 188/265 (70%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+ HRG+VK +PKDD KPVHLTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKYEAPRHGHLGFGPRKRTRSHRGRVKAYPKDDAKKPVHLTAFMGYKAGMTHIVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVEAVT++E P MVIVGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKKEIVEAVTVIEAPAMVIVGVVGYVETPRGLRSLTTVWAEHLSEEAKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK ++K+ + G K + ++L ++ KYC V+RVIAHTQ + LH
Sbjct: 122 WYRSKKKAFTKYAQKYAE--GAKDVTRELERIKKYCSVVRVIAHTQISKAKLH------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+KAH+MEIQLNGGSV K+ +AR+H E+ +
Sbjct: 173 -----------------------------QRKAHIMEIQLNGGSVEQKVDFAREHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG +F QDEMID I TKG GF+G
Sbjct: 204 TVGSIFEQDEMIDIIATTKGHGFEG 228
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
Q+KAH+MEIQLNGGSV K+ +AR+H E+ + VG +F QDEMID I TKG GF+GVT R
Sbjct: 173 QRKAHIMEIQLNGGSVEQKVDFAREHFEKEVTVGSIFEQDEMIDIIATTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHPSRV ++VARAGQ+GYH RTE+NKKIYR+ G K
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPSRVMYSVARAGQRGYHRRTEINKKIYRIATGADAK 292
Query: 435 DG 436
G
Sbjct: 293 SG 294
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 102/143 (71%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHPSRV ++VARAGQ+GYH RTE+ + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPSRVMYSVARAGQRGYHRRTEINKKIYRIATG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ +T+YDLTEK ITPMGGFPHYGEVN DF+MIKGCC G KKRVITLRK L
Sbjct: 289 ADAKSGTTEYDLTEKQITPMGGFPHYGEVNEDFVMIKGCCAGAKKRVITLRKS--LTVHT 346
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
K++ L ++ L + K R
Sbjct: 347 KRSALEKVTLKFIDTSSKFGHGR 369
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+V + IK C RVI ++ K Q+KAH+MEIQLNGGSV K+ +AR+H E
Sbjct: 143 DVTRELERIKKYC--SVVRVIAHTQISKAKLHQRKAHIMEIQLNGGSVEQKVDFAREHFE 200
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
+ + VG +F QDEMID I TKG GF+ H
Sbjct: 201 KEVTVGSIFEQDEMIDIIATTKGHGFEGVTH 231
>gi|400594267|gb|EJP62123.1| 60S ribosomal protein L3 [Beauveria bassiana ARSEF 2860]
Length = 392
Score = 311 bits (796), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK PRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR++D
Sbjct: 2 SHRKHEEPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDSD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKE+VEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKSNKKEVVEAVTIVDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +IA++L +M KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSESSG-ASIARELERMKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS++DK+ + ++ E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSISDKVDFGKELFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDEMID I VTKG GF G
Sbjct: 205 SVDSIFEQDEMIDVIAVTKGHGFTG 229
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 98/115 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS++DK+ + ++ E+P+ V +F QDEMID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQVNGGSISDKVDFGKELFEKPVSVDSIFEQDEMIDVIAVTKGHGFTGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N K+YR+G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQDGYHHRTSVNHKVYRIG 287
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 89/116 (76%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQDGYHHRTSVNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++ASTD D+T+K ITP+GGF YGEV NDF+M+KG G KKRV+TLRK
Sbjct: 286 IGKAGAEDSASTDMDITKKKITPLGGFVRYGEVKNDFVMVKGSIPGVKKRVMTLRK 341
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS++DK+ + ++ E+P+ V +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSISDKVDFGKELFEKPVSVDSIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|410985373|ref|XP_003998997.1| PREDICTED: 60S ribosomal protein L3-like [Felis catus]
Length = 407
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 196/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS+RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSSRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W++S++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHRSKKKAFTKACKRWRDAEGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+HT+DGKV
Sbjct: 288 GRGLHTEDGKV 298
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 108/143 (75%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y V++NNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHTEDGKVVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRQALENIELKF 367
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|407929355|gb|EKG22187.1| Ribosomal protein L3 [Macrophomina phaseolina MS6]
Length = 392
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEA T++ETPPM+ +GV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKLHKKEIVEACTVIETPPMIAIGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K+ + G K+I ++L ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKQHSEN-GGKSITRELERIKKYCTVVRVLAHTQISKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLME+Q+NGGSVA+K+ +A+ E+PI
Sbjct: 173 ----------------------------KQKKAHLMEVQVNGGSVAEKVDFAQGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDEMID I VTKG GF G
Sbjct: 205 EVSSIFEQDEMIDVIAVTKGHGFNG 229
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVA+K+ +A+ E+PI V +F QDEMID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEVQVNGGSVAEKVDFAQGLFEKPIEVSSIFEQDEMIDVIAVTKGHGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 88/112 (78%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
NAST++D+++K+ITP+GGF YGEV NDF+++KG G KKRV+TLRK
Sbjct: 290 EDAGNASTEFDVSKKTITPLGGFVRYGEVKNDFVLLKGSVPGVKKRVMTLRK 341
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLME+Q+NGGSVA+K+ +A+ E+PI V +F QDEMID I
Sbjct: 160 RVLAHTQISKTPLKQKKAHLMEVQVNGGSVAEKVDFAQGLFEKPIEVSSIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|343424921|emb|CBQ68459.1| probable RPL3-60s ribosomal protein l3 [Sporisorium reilianum SRZ2]
Length = 391
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA IGYKAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPKKPVHLTAMIGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVEAVT++ETPPMV VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKKEIVEAVTVIETPPMVAVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G +I+++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHSESNG-ASISRELERIKKYCTVVRVLAHTQVRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLME+Q+NGGSVA+K+ +A++H E+
Sbjct: 173 ----------------------------KQKKAHLMEVQINGGSVAEKVDFAKEHFEKTF 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+E+ID I VTKG G++G
Sbjct: 205 DVKSVFEQNEIIDVIAVTKGHGYEG 229
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 106/133 (79%), Gaps = 4/133 (3%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVA+K+ +A++H E+ V VF Q+E+ID I VTKG G++GVT+
Sbjct: 173 KQKKAHLMEVQINGGSVAEKVDFAKEHFEKTFDVKSVFEQNEIIDVIAVTKGHGYEGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTH+GLRK+ACIGAWHP+ V FTVAR+GQ GYHHRTE+ KKIYR+ G
Sbjct: 233 RWGTKKLPRKTHRGLRKIACIGAWHPANVMFTVARSGQDGYHHRTEIGKKIYRIANG--- 289
Query: 434 KDGKVSVTSRWHT 446
D K S ++ + T
Sbjct: 290 -DDKTSGSTDFDT 301
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 91/116 (78%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTH+GLRK+ACIGAWHP+ V FTVAR+GQ GYHHRTE+ +
Sbjct: 226 GYEGVTARWGTKKLPRKTHRGLRKIACIGAWHPANVMFTVARSGQDGYHHRTEIGKKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K + STD+D TEK+ITP+GGFPHYG V NDF+MIKG C G KKRV+TLRK
Sbjct: 286 IANGDDKTSGSTDFDTTEKTITPLGGFPHYGLVKNDFVMIKGSCPGVKKRVLTLRK 341
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLME+Q+NGGSVA+K+ +A++H E+ V VF Q+E+ID I
Sbjct: 160 RVLAHTQVRKTGLKQKKAHLMEVQINGGSVAEKVDFAKEHFEKTFDVKSVFEQNEIIDVI 219
Query: 605 GVTKGKGFK 613
VTKG G++
Sbjct: 220 AVTKGHGYE 228
>gi|121715726|ref|XP_001275472.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1]
gi|119403629|gb|EAW14046.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1]
Length = 392
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K+ ++ G ++ ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKQHAEESG-ASVTRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGG+VADK+ +AR E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGAVADKVDFARNLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF+G
Sbjct: 205 EIDSIFEKDEMIDVIAVTKGHGFQG 229
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG+VADK+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGAVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K++R+G G T
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKG--T 290
Query: 434 KDGKVSV 440
+G S
Sbjct: 291 DEGNAST 297
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTS---CNHKVFRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++M+KG G KKRV+TLRK
Sbjct: 287 GKGTDEGNASTEFDISKKQITPMGGFVRYGEVKNDYVMVKGSVPGVKKRVMTLRK 341
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGG+VADK+ +AR E+PI + +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGAVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 219
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 220 AVTKGHGFQ 228
>gi|194693910|gb|ACF81039.1| unknown [Zea mays]
gi|194702010|gb|ACF85089.1| unknown [Zea mays]
gi|195606812|gb|ACG25236.1| 60S ribosomal protein L3 [Zea mays]
gi|195619674|gb|ACG31667.1| 60S ribosomal protein L3 [Zea mays]
gi|195626206|gb|ACG34933.1| 60S ribosomal protein L3 [Zea mays]
gi|195641988|gb|ACG40462.1| 60S ribosomal protein L3 [Zea mays]
gi|414587226|tpg|DAA37797.1| TPA: 60S ribosomal protein L3 isoform 1 [Zea mays]
gi|414587227|tpg|DAA37798.1| TPA: 60S ribosomal protein L3 isoform 2 [Zea mays]
gi|414587235|tpg|DAA37806.1| TPA: 60S ribosomal protein L3 isoform 1 [Zea mays]
gi|414587236|tpg|DAA37807.1| TPA: 60S ribosomal protein L3 isoform 2 [Zea mays]
gi|414588487|tpg|DAA39058.1| TPA: 60S ribosomal protein L3 isoform 1 [Zea mays]
gi|414588488|tpg|DAA39059.1| TPA: 60S ribosomal protein L3 isoform 2 [Zea mays]
gi|414588489|tpg|DAA39060.1| TPA: 60S ribosomal protein L3 isoform 3 [Zea mays]
gi|414588495|tpg|DAA39066.1| TPA: 60S ribosomal protein L3 [Zea mays]
Length = 389
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 191/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FP+DDP KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDPKKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+++ GKK I L KM KY VIRVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 106/130 (81%), Gaps = 3/130 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G-AGIHTKDG 436
G AG T D
Sbjct: 289 GKAGQETHDA 298
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMI
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMI 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|414587228|tpg|DAA37799.1| TPA: hypothetical protein ZEAMMB73_342493 [Zea mays]
Length = 307
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 191/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FP+DDP KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDPKKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+++ GKK I L KM KY VIRVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 106/130 (81%), Gaps = 3/130 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G-AGIHTKDG 436
G AG T D
Sbjct: 289 GKAGQETHDA 298
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 47/60 (78%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM 281
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMI
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMI 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|313586459|gb|ADR71240.1| 60S ribosomal protein L3B [Hevea brasiliensis]
Length = 389
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/265 (58%), Positives = 192/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKDDPTKP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+GYV+TP GLR+ TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SK+++ GKK+I L K+ KY V+RV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKQYETDDGKKSIQAQLEKIKKYAHVVRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++A K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 108/161 (67%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + + A TDYD TEK ITPMGGFPHYG V +D++MIKGCC+GPKKRV
Sbjct: 281 -MNKKIYKLGKAGQESHTAITDYDRTEKDITPMGGFPHYGVVKDDYIMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LL + + A L EI+L + K R Q
Sbjct: 340 VTLRR-SLLTQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|125535904|gb|EAY82392.1| hypothetical protein OsI_37606 [Oryza sativa Indica Group]
Length = 733
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/274 (56%), Positives = 194/274 (70%), Gaps = 35/274 (12%)
Query: 30 SARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAG 89
S + R +K SHRKF PRHGS+GF P+KRS+RHRGKVK FPKDD +KP HLT+F+GYKAG
Sbjct: 337 SPQVRRRKMSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAG 396
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTHIVRE ++PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLRS +VWA+HLS+
Sbjct: 397 MTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSE 456
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
E RRRFYKNW KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 457 EVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIR--- 513
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
+MK LK QKKAHLMEIQ+NGG++ADK+ +
Sbjct: 514 ------------------------------KMKGLK--QKKAHLMEIQINGGTIADKVDY 541
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ E+ IPV VF +DEMID IGVTKGKG++G
Sbjct: 542 GYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEG 575
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMID IGVTKGKG
Sbjct: 515 MKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKG 572
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 573 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 632
Query: 428 G 428
G
Sbjct: 633 G 633
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 107/156 (68%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 566 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 624
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y S + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 625 -MNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 683
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 684 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 717
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMI
Sbjct: 505 RVIAHTQIRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMI 562
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 563 DIIGVTKGKGYEGVV 577
>gi|169861488|ref|XP_001837378.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130]
gi|116501399|gb|EAU84294.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130]
Length = 388
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDPKKPVHLTAMMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVTI+ETPPM+ VG++GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTIIETPPMIAVGLVGYVETPRGLRTLTTVWANHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K++ ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKNAED-GGKSVQRELERIRKYCSVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSVADK+ + + E+PI
Sbjct: 173 ----------------------------AQKKAHLMEIQINGGSVADKVDFGYKLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDE +D I VTKG GF+G
Sbjct: 205 EVSSVFEQDENVDVIAVTKGHGFEG 229
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 102/128 (79%), Gaps = 2/128 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSVADK+ + + E+PI V VF QDE +D I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQINGGSVADKVDFGYKLFEKPIEVSSVFEQDENVDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTHKGLRKVACIGAWHPS V F+VARAGQ GYHHRTE+NKKIYR+G G +
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSNVMFSVARAGQNGYHHRTEINKKIYRIGLG--SD 291
Query: 435 DGKVSVTS 442
DG S S
Sbjct: 292 DGNASTES 299
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 90/114 (78%), Gaps = 4/114 (3%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS V F+VARAGQ GYHHRTE + KK Y
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSNVMFSVARAGQNGYHHRTE--INKKIYRIG 287
Query: 500 VIKN--NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ + NAST+ D+T+K ITP+GGFPHYG V NDFL++KG G KKRVIT+RK
Sbjct: 288 LGSDDGNASTESDITKKVITPLGGFPHYGVVKNDFLLVKGSIPGTKKRVITIRK 341
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAHLMEIQ+NGGSVADK+ + + E+PI V VF QDE +D I VTKG GF+ H
Sbjct: 174 QKKAHLMEIQINGGSVADKVDFGYKLFEKPIEVSSVFEQDENVDVIAVTKGHGFEGVTH 232
>gi|327349122|gb|EGE77979.1| hypothetical protein BDDG_00916 [Ajellomyces dermatitidis ATCC
18188]
Length = 392
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KRSARHRGKVK FPKDDP KPVHLTA +GYKAGMT VR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRSARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTTVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPPM+ VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTIVETPPMIAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K + G +I+++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKNHSENSGA-SISRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLME+Q+NGGSVADK+ +A E+PI
Sbjct: 173 ----------------------------KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF +DEMID I VTKG GF G
Sbjct: 205 EIDSVFEKDEMIDVIAVTKGHGFNG 229
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVADK+ +A E+PI + VF +DEMID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDSVFEKDEMIDVIAVTKGHGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKIYRIGKG 289
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTS---CNHKIYRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++MIKG G KKRV+TLRK
Sbjct: 287 GKGSDEGNASTEFDVSKKQITPMGGFVRYGEVKNDYVMIKGSVPGVKKRVLTLRK 341
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLME+Q+NGGSVADK+ +A E+PI + VF +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDSVFEKDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|408399768|gb|EKJ78861.1| hypothetical protein FPSE_01004 [Fusarium pseudograminearum CS3096]
Length = 391
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAYLPRKRAARHRGKVKSFPKDDHKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKEIVEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKANKKEIVEAVTIVDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENNGA-SITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVSFGQELFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDEMID + VTKG GF G
Sbjct: 205 DVSSIFEQDEMIDVVAVTKGHGFNG 229
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+ V +F QDEMID + VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVSFGQELFEKPVDVSSIFEQDEMIDVVAVTKGHGFNGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 88/112 (78%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+NA+T+ D+T+K+ITP+GGF YGEV NDF+M+KG G KKRV+TLRK
Sbjct: 290 DADDNAATEIDVTKKTITPLGGFVRYGEVKNDFVMLKGSIPGVKKRVMTLRK 341
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 51/68 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+ V +F QDEMID +
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSIADKVSFGQELFEKPVDVSSIFEQDEMIDVV 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|313586457|gb|ADR71239.1| 60S ribosomal protein L3A [Hevea brasiliensis]
Length = 389
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/265 (58%), Positives = 192/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKDDPTKP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+GYV+TP GLR+ TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SK+++ GKK+I L K+ KY V+RV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKQYETDDGKKSIQAQLEKIKKYAHVVRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++A K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 108/161 (67%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + + A TDYD TEK ITPMGGFPHYG V +D++MIKGCC+GPKKRV
Sbjct: 281 -MNKKIYKLGKAGQESHTAITDYDRTEKDITPMGGFPHYGVVKDDYIMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR + LL + + A L EI+L + K R Q
Sbjct: 340 VTLR-LFLLTQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|331233068|ref|XP_003329195.1| 60S ribosomal protein L3 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309308185|gb|EFP84776.1| 60S ribosomal protein L3 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 388
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PRHGS GF P+KR+ARHRGKVK FP DD TKPVHLTA +GYKAGMTHI+R+ D
Sbjct: 2 SHRKWEHPRHGSTGFLPRKRAARHRGKVKSFPVDDKTKPVHLTAMLGYKAGMTHILRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVTI+ETPPMVIVGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTIVETPPMVIVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK +KK + +IA++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTKYAKKHAES-STGSIARELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +A+ H E+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFAKSHFEKTF 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+E ID I VTKGKG++G
Sbjct: 205 DVSSVFEQNENIDVIAVTKGKGYEG 229
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +A+ H E+ V VF Q+E ID I VTKGKG++GVT
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFAKSHFEKTFDVSSVFEQNENIDVIAVTKGKGYEGVTH 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW KKLPRKTHKGLRKVACIGAWHPS+V FTVARAGQ GYHHRTELNKK++R+G G
Sbjct: 233 RWGCKKLPRKTHKGLRKVACIGAWHPSKVMFTVARAGQDGYHHRTELNKKVFRVGKG 289
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 88/120 (73%), Gaps = 8/120 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT RW KKLPRKTHKGLRKVACIGAWHPS+V FTVARAGQ GYHHRTEL K
Sbjct: 226 GYEGVTHRWGCKKLPRKTHKGLRKVACIGAWHPSKVMFTVARAGQDGYHHRTEL----NK 281
Query: 496 YLSMVIKN----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ V K NA+T++D T K+ITPMGGF YG V NDFLM+KG G KKRVITLRK
Sbjct: 282 KVFRVGKGGDEANATTEFDTTTKAITPMGGFVRYGVVKNDFLMLKGSVPGVKKRVITLRK 341
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +A+ H E+ V VF Q+E ID I
Sbjct: 160 RVLAHTQIRKTGLKQKKAHLMEIQVNGGSVADKVDFAKSHFEKTFDVSSVFEQNENIDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKGKG++ H
Sbjct: 220 AVTKGKGYEGVTH 232
>gi|440913411|gb|ELR62861.1| 60S ribosomal protein L3-like protein, partial [Bos grunniens
mutus]
Length = 407
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 196/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q+E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQNEIIDVIAVTKGRGIKG 230
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE+ +PV VF+Q+E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 IKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 288 GRGLHMEDGKV 298
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 112/152 (73%), Gaps = 13/152 (8%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY--- 496
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 231 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 288
Query: 497 --LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L M V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLR
Sbjct: 289 RGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 348
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
K LL ++A L I+L K R
Sbjct: 349 K-SLLGHHSRQA-LENIELKFIDTTSKFGHGR 378
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q+E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQNEIIDVIAVTKGRGIK 229
>gi|78369254|ref|NP_001030578.1| 60S ribosomal protein L3-like [Bos taurus]
gi|88932612|sp|Q3SZ10.3|RL3L_BOVIN RecName: Full=60S ribosomal protein L3-like
gi|74267896|gb|AAI03273.1| Ribosomal protein L3-like [Bos taurus]
gi|296473512|tpg|DAA15627.1| TPA: 60S ribosomal protein L3-like [Bos taurus]
Length = 407
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 196/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q+E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQNEIIDVIAVTKGRGIKG 230
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE+ +PV VF+Q+E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 IKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 288 GRGLHMEDGKV 298
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 109/139 (78%), Gaps = 11/139 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY--- 496
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 231 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 288
Query: 497 --LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L M V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLR
Sbjct: 289 RGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 348
Query: 551 KMKLLKKRQKKAHLMEIQL 569
K L+ ++ +E++
Sbjct: 349 KSLLVHHSRQALENIELKF 367
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q+E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQNEIIDVIAVTKGRGIK 229
>gi|348584788|ref|XP_003478154.1| PREDICTED: 60S ribosomal protein L3-like [Cavia porcellus]
Length = 417
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/267 (60%), Positives = 196/267 (73%), Gaps = 36/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
+ SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 10 RPSHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLRE 69
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFY
Sbjct: 70 VHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVTTPRGLRSFKTIFAEHLSDECRRRFY 129
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
K+W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 130 KDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT------------- 176
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+
Sbjct: 177 -----------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEK 213
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PV VF+Q E+ID I VTKG+G KG
Sbjct: 214 QVPVHSVFSQSEVIDVIAVTKGRGVKG 240
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 178 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 237
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 238 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 297
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 298 GRGLHMEDGKL 308
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 237 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 294
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNAST YD+T+KSITP+GGFPHYGEVNND++M+KGC G KKRV
Sbjct: 295 YRIGRGLHMEDGKLVKNNASTSYDVTDKSITPLGGFPHYGEVNNDYIMLKGCIAGTKKRV 354
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 355 ITLRKSLLVHHSRRALENIELKF 377
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 155 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 212
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 213 KQVPVHSVFSQSEVIDVIAVTKGRGVK 239
>gi|240275987|gb|EER39500.1| large subunit ribosomal protein L3 [Ajellomyces capsulatus H143]
gi|325093348|gb|EGC46658.1| large subunit ribosomal protein L3 [Ajellomyces capsulatus H88]
Length = 439
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/275 (55%), Positives = 190/275 (69%), Gaps = 37/275 (13%)
Query: 29 RSARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKA 88
R H K SHRKF APRHGS+ F P+KRSARHRGKVK FPKDDP KPVHLTA +GYKA
Sbjct: 39 RQTNHNRVKMSHRKFEAPRHGSLAFLPRKRSARHRGKVKSFPKDDPKKPVHLTAAMGYKA 98
Query: 89 GMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLS 148
GMT VR+ +RPG+K++KKEIVEAVTI+ETPPM+ VGV+GY+ETP GLRS TVWAEHLS
Sbjct: 99 GMTTTVRDLERPGAKMHKKEIVEAVTIVETPPMIAVGVVGYIETPRGLRSLTTVWAEHLS 158
Query: 149 QECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQ 208
E +RRFYKNWYKS++KAFTK +K + G ++A++L ++ KYC V+R++AHTQ ++
Sbjct: 159 DEVKRRFYKNWYKSKKKAFTKYAKNHSENKGA-SVARELERIKKYCTVVRLLAHTQIRKT 217
Query: 209 SLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIA 268
L +QKKAHLME+Q+NGGSVADK+
Sbjct: 218 PL------------------------------------KQKKAHLMEVQVNGGSVADKVD 241
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+A E+PI + +F +DEMID I VTKG GF G
Sbjct: 242 FAHGLFEKPIEIDTIFEKDEMIDVIAVTKGHGFNG 276
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVADK+ +A E+PI + +F +DEMID I VTKG GF GVTS
Sbjct: 220 KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDTIFEKDEMIDVIAVTKGHGFNGVTS 279
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G G
Sbjct: 280 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKIYRIGKG 336
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 277 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTS---CNHKIYRI 333
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++MIKG G KKRV+TLRK
Sbjct: 334 GKGSDEGNASTEFDVSKKQITPMGGFVRYGEVRNDYVMIKGSVPGVKKRVLTLRK 388
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 612
+QKKAHLME+Q+NGGSVADK+ +A E+PI + +F +DEMID I VTKG GF
Sbjct: 220 KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDTIFEKDEMIDVIAVTKGHGF 274
>gi|402907275|ref|XP_003916403.1| PREDICTED: 60S ribosomal protein L3-like [Papio anubis]
Length = 407
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 288 GRGLHMEDGKL 298
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 109/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRQAVENIELKF 367
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|449441226|ref|XP_004138383.1| PREDICTED: 60S ribosomal protein L3-like [Cucumis sativus]
gi|449499176|ref|XP_004160742.1| PREDICTED: 60S ribosomal protein L3-like [Cucumis sativus]
Length = 389
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDD TKP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDATKPCRLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+ETPPMVIVGV+GYV+TP GLR+ TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLGTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAF K SK+++ GKKTI + L K+ KY VIRV+AHTQ
Sbjct: 122 WCKSKKKAFAKYSKQYETDEGKKTIQEKLEKLKKYASVIRVLAHTQI------------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +
Sbjct: 169 --------------------TKMKGLK--QKKAHLMEIQVNGGSIAQKVDYAYGFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVEAVFQKDEMIDLIGVTKGKGYEG 231
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 103/125 (82%), Gaps = 2/125 (1%)
Query: 304 EMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVT 363
++ MK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +PV VF +DEMID IGVT
Sbjct: 167 QITKMKGLK--QKKAHLMEIQVNGGSIAQKVDYAYGFFEKQVPVEAVFQKDEMIDLIGVT 224
Query: 364 KGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKK 423
KGKG++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKK 284
Query: 424 IYRMG 428
+Y++G
Sbjct: 285 VYKIG 289
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 108/161 (67%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + + A T++D TEK ITPMGGFPHYG V +D+LMIKG C+GPKKRV
Sbjct: 281 -MNKKVYKIGKTGQESHTAITEFDRTEKDITPMGGFPHYGIVKSDYLMIKGGCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
ITLR+ LLK+ + A L EI+L + K R Q
Sbjct: 340 ITLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+ KMK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +PV VF +DEMID IGVTK
Sbjct: 168 ITKMKGLK--QKKAHLMEIQVNGGSIAQKVDYAYGFFEKQVPVEAVFQKDEMIDLIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|398411379|ref|XP_003857029.1| 60S ribosomal protein L3 [Zymoseptoria tritici IPO323]
gi|339476914|gb|EGP92005.1| hypothetical protein MYCGRDRAFT_102848 [Zymoseptoria tritici
IPO323]
Length = 392
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP + HLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKQKTHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEA T++ETPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKLHKKEIVEAATVIETPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G K+I +DL ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKHAEE-GGKSITRDLERIKKYCTVVRVLAHTQISKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ + + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVEFGQGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q+EMIDCI VTKG GF G
Sbjct: 205 EIDSIFEQNEMIDCIAVTKGHGFSG 229
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/135 (65%), Positives = 106/135 (78%), Gaps = 3/135 (2%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ + + E+P+ + +F Q+EMIDCI VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVEFGQGLFEKPVEIDSIFEQNEMIDCIAVTKGHGFSGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS VQ++VARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWSVARAGQDGYHHRTSVNHKVYRIGKG--- 289
Query: 434 KDGKVSVTSRWHTKK 448
D + T H+KK
Sbjct: 290 NDEGNATTDFDHSKK 304
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 96/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ++VARAGQ GYHHRT + +
Sbjct: 226 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWSVARAGQDGYHHRTSVNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ NA+TD+D ++K+ITP+GGF YGEV NDF+++KG G KKRV+TLRK +
Sbjct: 286 IGKGNDEGNATTDFDHSKKAITPLGGFVRYGEVKNDFVLLKGSVPGVKKRVMTLRKSMFI 345
Query: 556 KKRQKKAHLMEIQ 568
++ +E++
Sbjct: 346 HTSRRALEKVELK 358
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C RV+ ++ +QKKAHLMEIQ+NGGS+ADK+ + + E+
Sbjct: 145 ITRDLERIKKYCT--VVRVLAHTQISKTPLKQKKAHLMEIQVNGGSIADKVEFGQGLFEK 202
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGF 612
P+ + +F Q+EMIDCI VTKG GF
Sbjct: 203 PVEIDSIFEQNEMIDCIAVTKGHGF 227
>gi|189053728|dbj|BAG35980.1| unnamed protein product [Homo sapiens]
Length = 407
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVAVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKI+R+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRI 287
Query: 428 GAGIHTKDGKV 438
G G H +DGK+
Sbjct: 288 GRGPHMEDGKL 298
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 107/144 (74%), Gaps = 13/144 (9%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTEL KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL---NKK 283
Query: 496 YLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKR
Sbjct: 284 IFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKR 343
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK L+ ++ +E++
Sbjct: 344 VITLRKSLLVHHSRQAVENIELKF 367
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|300797628|ref|NP_001178518.1| 60S ribosomal protein L3-like [Rattus norvegicus]
Length = 407
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKSWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 288 GRGLHMEDGKM 298
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M +++NNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHMEDGKMVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRRALENIELKF 367
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|145232153|ref|XP_001399531.1| 60S ribosomal protein L3 [Aspergillus niger CBS 513.88]
gi|134056442|emb|CAL00609.1| unnamed protein product [Aspergillus niger]
Length = 392
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKE+VEA T++ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEVVEAATVIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQVRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF+G
Sbjct: 205 EIDSIFEKDEMIDVIAVTKGHGFQG 229
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQMGYHHRTSCNHKVFRVGKG 289
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 90/115 (78%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQMGYHHRTS---CNHKVFRV 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF HYGEV NDF+++KG G KKRV+TLRK
Sbjct: 287 GKGSDEGNASTDFDISKKQITPMGGFVHYGEVKNDFVLLKGSVPGVKKRVMTLRK 341
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I
Sbjct: 160 RVLAHTQVRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 219
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 220 AVTKGHGFQ 228
>gi|14336774|gb|AAK61301.1|AE006640_5 60S ribosomal protein L3 like [Homo sapiens]
Length = 406
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 1 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 61 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 121 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 166 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 205 PVHSVFSQSEVIDVIAVTKGRGVKG 229
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 167 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 226
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKI+R+
Sbjct: 227 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRI 286
Query: 428 GAGIHTKDGKV 438
G G H +DGK+
Sbjct: 287 GRGPHMEDGKL 297
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 107/144 (74%), Gaps = 13/144 (9%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTEL KK
Sbjct: 226 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL---NKK 282
Query: 496 YLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKR
Sbjct: 283 IFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKR 342
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK L+ ++ +E++
Sbjct: 343 VITLRKSLLVHHSRQAVENIELKF 366
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 144 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 201
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 202 KQVPVHSVFSQSEVIDVIAVTKGRGVK 228
>gi|225563388|gb|EEH11667.1| large subunit ribosomal protein L3 [Ajellomyces capsulatus G186AR]
Length = 552
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/275 (55%), Positives = 190/275 (69%), Gaps = 37/275 (13%)
Query: 29 RSARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKA 88
R H K SHRKF APRHGS+ F P+KRSARHRGKVK FPKDDP KPVHLTA +GYKA
Sbjct: 152 RQTNHNRVKMSHRKFEAPRHGSLAFLPRKRSARHRGKVKSFPKDDPKKPVHLTAAMGYKA 211
Query: 89 GMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLS 148
GMT VR+ +RPG+K++KKEIVEAVTI+ETPPM+ VGV+GY+ETP GLRS TVWAEHLS
Sbjct: 212 GMTTTVRDLERPGAKMHKKEIVEAVTIVETPPMIAVGVVGYIETPRGLRSLTTVWAEHLS 271
Query: 149 QECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQ 208
E +RRFYKNWYKS++KAFTK +K + G ++A++L ++ KYC V+R++AHTQ ++
Sbjct: 272 DEVKRRFYKNWYKSKKKAFTKYAKNHSENKGA-SVARELERIKKYCTVVRLLAHTQIRKT 330
Query: 209 SLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIA 268
L +QKKAHLME+Q+NGGSVADK+
Sbjct: 331 PL------------------------------------KQKKAHLMEVQVNGGSVADKVD 354
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+A E+PI + +F +DEMID I VTKG GF G
Sbjct: 355 FAHGLFEKPIEIDTIFEKDEMIDVIAVTKGHGFNG 389
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVADK+ +A E+PI + +F +DEMID I VTKG GF GVTS
Sbjct: 333 KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDTIFEKDEMIDVIAVTKGHGFNGVTS 392
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G G
Sbjct: 393 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKIYRIGKG 449
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 390 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTS---CNHKIYRI 446
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++MIKG G KKRV+TLRK
Sbjct: 447 GKGSDEGNASTEFDVSKKQITPMGGFVRYGEVKNDYVMIKGSVPGVKKRVLTLRK 501
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLME+Q+NGGSVADK+ +A E+PI + +F +DEMID I VTK
Sbjct: 327 IRKTPL---KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDTIFEKDEMIDVIAVTK 383
Query: 609 GKGF 612
G GF
Sbjct: 384 GHGF 387
>gi|431906679|gb|ELK10800.1| 60S ribosomal protein L3-like protein, partial [Pteropus alecto]
Length = 406
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 1 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 61 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 121 WHKSKKKAFTKACKRWRDANGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 166 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 205 PVHSVFSQSEVIDVIAVTKGRGVKG 229
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 167 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 226
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 227 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 286
Query: 428 GAGIHTKDGKV 438
G G H +DGKV
Sbjct: 287 GQGPHMEDGKV 297
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 108/143 (75%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 226 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 283
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 284 YRIGQGPHMEDGKVVKNNASTSYDMTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 343
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 344 ITLRKSLLVHHSRRALENIELKF 366
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 144 QLQKDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 201
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 202 KQVPVHSVFSQSEVIDVIAVTKGRGVK 228
>gi|295674007|ref|XP_002797549.1| 60S ribosomal protein L3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280199|gb|EEH35765.1| 60S ribosomal protein L3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286840|gb|EEH42353.1| 60S ribosomal protein L3 [Paracoccidioides brasiliensis Pb18]
Length = 392
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KRSARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ +
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRSARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTVVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPPM+ VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTIVETPPMIAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K + G +++++L ++ KYC V+R++AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKNHSENTGA-SVSRELERIKKYCTVVRLLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLME+Q+NGGS+ADK+ +A E+PI
Sbjct: 173 ----------------------------KQKKAHLMEVQVNGGSIADKVDFAHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDEMID I VTKG GF G
Sbjct: 205 QIDSVFEQDEMIDVIAVTKGHGFNG 229
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGS+ADK+ +A E+PI + VF QDEMID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEVQVNGGSIADKVDFAHGLFEKPIQIDSVFEQDEMIDVIAVTKGHGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKIYRIGKG 289
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTS---CNHKIYRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++M+KG G KKRV+TLRK
Sbjct: 287 GKGSDEGNASTEFDVSKKQITPMGGFVRYGEVKNDYVMLKGSVPGVKKRVLTLRK 341
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLME+Q+NGGS+ADK+ +A E+PI + VF QDEMID I VTK
Sbjct: 167 IRKTPL---KQKKAHLMEVQVNGGSIADKVDFAHGLFEKPIQIDSVFEQDEMIDVIAVTK 223
Query: 609 GKGF 612
G GF
Sbjct: 224 GHGF 227
>gi|4826988|ref|NP_005052.1| 60S ribosomal protein L3-like [Homo sapiens]
gi|397472395|ref|XP_003807730.1| PREDICTED: 60S ribosomal protein L3-like [Pan paniscus]
gi|426380751|ref|XP_004057025.1| PREDICTED: 60S ribosomal protein L3-like [Gorilla gorilla gorilla]
gi|2500230|sp|Q92901.3|RL3L_HUMAN RecName: Full=60S ribosomal protein L3-like
gi|1638884|gb|AAC50777.1| ribosomal protein L3-like [Homo sapiens]
gi|30046542|gb|AAH50413.1| Ribosomal protein L3-like [Homo sapiens]
gi|119606005|gb|EAW85599.1| ribosomal protein L3-like [Homo sapiens]
Length = 407
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKI+R+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRI 287
Query: 428 GAGIHTKDGKV 438
G G H +DGK+
Sbjct: 288 GRGPHMEDGKL 298
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 107/144 (74%), Gaps = 13/144 (9%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTEL KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL---NKK 283
Query: 496 YLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKR
Sbjct: 284 IFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKR 343
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK L+ ++ +E++
Sbjct: 344 VITLRKSLLVHHSRQAVENIELKF 367
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|340522512|gb|EGR52745.1| hypothetical protein TRIREDRAFT_73765 [Trichoderma reesei QM6a]
Length = 391
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAV+I++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEVVEAVSIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK D G +I ++L ++ KYC V+R++AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSDNSGA-SINRELERIKKYCTVVRILAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +A+ E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFAKDLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDE+ID I VTKG GF G
Sbjct: 205 SVDTIFEQDEVIDVIAVTKGHGFSG 229
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +A+ E+P+ V +F QDE+ID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFAKDLFEKPVSVDTIFEQDEVIDVIAVTKGHGFSGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ+GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQEGYHHRTSVNHKVYRIGKG 289
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 91/116 (78%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ+GYHHRT + +
Sbjct: 226 GFSGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQEGYHHRTSVNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++ASTD D+T+K ITP+GGF YGEVNNDF+M+KG G KKRV+TLRK
Sbjct: 286 IGKGDAEDSASTDVDVTKKKITPLGGFVRYGEVNNDFVMVKGSIPGTKKRVVTLRK 341
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
+N + IK C R++ +++ +QKKAHLMEIQ+NGGSVADK+ +A+
Sbjct: 143 ASINRELERIKKYCT--VVRILAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFAKDLF 200
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGF 612
E+P+ V +F QDE+ID I VTKG GF
Sbjct: 201 EKPVSVDTIFEQDEVIDVIAVTKGHGF 227
>gi|355756447|gb|EHH60055.1| 60S ribosomal protein L3-like protein [Macaca fascicularis]
Length = 425
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 12 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 71
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 72 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 131
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 132 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 176
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 177 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 215
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 216 PVHSVFSQSEVIDVIAVTKGRGVKG 240
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 178 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 237
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 238 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 297
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 298 GRGLHMEDGKL 308
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 109/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 237 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 294
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 295 YRIGRGLHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 354
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 355 ITLRKSLLVHHSRQAVENIELKF 377
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 155 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 212
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 213 KQVPVHSVFSQSEVIDVIAVTKGRGVK 239
>gi|21215170|gb|AAM43909.1|AF464911_1 large subunit ribosomal protein L3 [Aspergillus fumigatus]
Length = 392
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ARHRGKVK FPK DP KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKYDPKKPVHLTASMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF+G
Sbjct: 205 EIDSIFEKDEMIDVIAVTKGHGFQG 229
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKG 289
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTS---CNHKVFRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++M+KG G KKRV+TLRK
Sbjct: 287 GKGSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRK 341
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 219
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 220 AVTKGHGFQ 228
>gi|341038755|gb|EGS23747.1| 60S ribosomal protein L3-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 392
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ARHRG+VK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAARHRGRVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVTI++ PPMV+VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEVVEAVTIIDCPPMVVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKYAENNG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + R E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVEFGRSLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF G
Sbjct: 205 TIDTIFEKDEMIDVIAVTKGHGFVG 229
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 98/117 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + R E+P+ + +F +DEMID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSVADKVEFGRSLFEKPVTIDTIFEKDEMIDVIAVTKGHGFVGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 81/133 (60%), Positives = 96/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFVGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ NAST+ DLT+K ITPMGGF YGEVNND++MIKG G KKR++TLRK
Sbjct: 286 IGKGDDEANASTETDLTKKKITPMGGFVRYGEVNNDYVMIKGSVPGVKKRIMTLRKSLFT 345
Query: 556 KKRQKKAHLMEIQ 568
+K +E++
Sbjct: 346 HTSRKALEKVELK 358
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + R E+P+ + +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVEFGRSLFEKPVTIDTIFEKDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|345317852|ref|XP_001514408.2| PREDICTED: 60S ribosomal protein L3 [Ornithorhynchus anatinus]
Length = 378
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/236 (61%), Positives = 177/236 (75%), Gaps = 36/236 (15%)
Query: 68 CFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVI 127
F +DDPTKP+HLTAF+GYKAGMTHIVRE DRPGSK+NKKE+VEAVTI+ETPPMVIVG++
Sbjct: 6 AFYQDDPTKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIV 65
Query: 128 GYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDL 187
GYV+TP GLR+FKT++AEH+S EC+RRFYKNW+KS++KAFTK KKWQD+ GKK + +D
Sbjct: 66 GYVQTPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEEGKKQLEKDF 125
Query: 188 RKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKR 247
M KYC+VIRVIAHTQ M++L R
Sbjct: 126 NSMKKYCQVIRVIAHTQ------------------------------------MRVLPLR 149
Query: 248 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
QKK+HLMEIQ+NGGS+A+K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG+KG
Sbjct: 150 QKKSHLMEIQVNGGSIAEKVDWAREKLEQQVPVATVFGQDEMIDVIGVTKGKGYKG 205
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M++L RQKK+HLMEIQ+NGGS+A+K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 143 MRVLPLRQKKSHLMEIQVNGGSIAEKVDWAREKLEQQVPVATVFGQDEMIDVIGVTKGKG 202
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 203 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 262
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 263 GQGYQIKDGKL 273
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 196 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 254
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +
Sbjct: 255 -INKKIYKIGQGYQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVV 313
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ +++ ++++
Sbjct: 314 GTKKRVLTLRKSLLVQTKRRALEKIDLKF 342
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M++L RQKK+HLMEIQ+NGGS+A+K+ WAR+ LE
Sbjct: 120 QLEKDFNSMKKYCQVI--RVIAHTQMRVLPLRQKKSHLMEIQVNGGSIAEKVDWAREKLE 177
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKGKG+K
Sbjct: 178 QQVPVATVFGQDEMIDVIGVTKGKGYK 204
>gi|149751051|ref|XP_001497954.1| PREDICTED: 60S ribosomal protein L3-like [Equus caballus]
Length = 407
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA ++W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACRRWRDASGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 288 GRGLHMEDGKV 298
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 104/129 (80%), Gaps = 11/129 (8%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLL 555
ITLRK L+
Sbjct: 345 ITLRKSLLV 353
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|403273327|ref|XP_003928470.1| PREDICTED: 60S ribosomal protein L3-like [Saimiri boliviensis
boliviensis]
Length = 407
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GK+ + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDTDGKEQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 288 GRGLHMEDGKL 298
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNAST+YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHMEDGKLVKNNASTNYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRQALENIELKF 367
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|156065829|ref|XP_001598836.1| 60S ribosomal protein L3 [Sclerotinia sclerotiorum 1980 UF-70]
gi|154691784|gb|EDN91522.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 392
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 189/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ + P+KR++RHRGKVK FPKDD TKPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAYLPRKRASRHRGKVKSFPKDDKTKPVHLTATLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVT++ETPP+++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKTHKKEVVEAVTVIETPPVIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENSGS-SITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVA+K+ +A E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVAEKVDFASGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+G +F QDEMID I VTKG GF G
Sbjct: 205 EIGSIFEQDEMIDVIAVTKGHGFSG 229
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 98/117 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVA+K+ +A E+P+ +G +F QDEMID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVAEKVDFASGLFEKPVEIGSIFEQDEMIDVIAVTKGHGFSGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQDGYHHRTSCNHKVYRIGRG 289
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 98/136 (72%), Gaps = 6/136 (4%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT C K
Sbjct: 226 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQDGYHHRTS---CNHK 282
Query: 496 YLSM---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ NNA+T++D+++K+ITPMGGF YGEV ND++M+KG G KKRV+TLRK
Sbjct: 283 VYRIGRGDDPNNAATEFDVSKKAITPMGGFVRYGEVKNDYIMLKGSVPGVKKRVMTLRKS 342
Query: 553 KLLKKRQKKAHLMEIQ 568
+ +K +E++
Sbjct: 343 MFVHTSRKALEKVELK 358
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVA+K+ +A E+P+ +G +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVAEKVDFASGLFEKPVEIGSIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|332240032|ref|XP_003269194.1| PREDICTED: 60S ribosomal protein L3-like [Nomascus leucogenys]
Length = 407
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPVVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G H +DGK+
Sbjct: 288 GRGPHMEDGKL 298
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 107/143 (74%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRQAVENIELKF 367
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|6537320|gb|AAF15600.1|AF198447_1 60S ribosomal protein L3 [Emericella nidulans]
gi|259479602|tpe|CBF69975.1| TPA: 60S ribosomal protein L3 [Source:UniProtKB/TrEMBL;Acc:Q9UV31]
[Aspergillus nidulans FGSC A4]
Length = 392
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRG+VK FPKDDP KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGRVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEA T++ETPP++ VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAATVIETPPLIAVGVVGYIETPRGLRSLATVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G +I +DL ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSEENG-ASITRDLERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVA+K+ +AR E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVAEKVDFARNLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF+G
Sbjct: 205 EIDTIFEKDEMIDVIAVTKGHGFQG 229
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVA+K+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVAEKVDFARNLFEKPIEIDTIFEKDEMIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKG 289
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTS---CNHKVFRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITP+GGF YGEV NDF+++KG G KKRV+TLRK
Sbjct: 287 GKGSDEANASTDFDVSKKQITPLGGFVRYGEVKNDFILLKGSVPGVKKRVMTLRK 341
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
+ D IK C RV+ +++ +QKKAHLMEIQ+NGGSVA+K+ +AR
Sbjct: 143 ASITRDLERIKKYCT--VVRVLAHTQIRKTPLKQKKAHLMEIQVNGGSVAEKVDFARNLF 200
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
E+PI + +F +DEMID I VTKG GF+
Sbjct: 201 EKPIEIDTIFEKDEMIDVIAVTKGHGFQ 228
>gi|109127211|ref|XP_001082003.1| PREDICTED: 60S ribosomal protein L3-like [Macaca mulatta]
Length = 407
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLN G+VADK+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNVGTVADKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLN G+VADK+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNVGTVADKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 288 GRGLHMEDGKL 298
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 109/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRQAVENIELKF 367
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLN G+VADK+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEIQLNVGTVADKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|354478689|ref|XP_003501547.1| PREDICTED: 60S ribosomal protein L3-like [Cricetulus griseus]
Length = 407
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP +PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKSWPRDDPKQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFY++
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYRD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDPSGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAQLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAQLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 288 GRGLHMEDGKM 298
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHMEDGKMVKNNASTSYDMTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRRALENIELKF 367
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAQLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|440635244|gb|ELR05163.1| hypothetical protein GMDG_07204 [Geomyces destructans 20631-21]
Length = 606
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTATMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVT++ETPPM++VG++GY+ETP GLRS TVWAEHLS + +RRFYKN
Sbjct: 62 RPGAKSHKKEVVEAVTVIETPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDDLKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSEASG-SSITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLME+Q+NGGSVA+K+ +A E+P+
Sbjct: 173 ----------------------------KQKKAHLMEVQINGGSVAEKVEFASGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDEMID I VTKGKGF G
Sbjct: 205 EVASIFEQDEMIDVIAVTKGKGFSG 229
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 103/126 (81%), Gaps = 2/126 (1%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVA+K+ +A E+P+ V +F QDEMID I VTKGKGF GVTS
Sbjct: 173 KQKKAHLMEVQINGGSVAEKVEFASGLFEKPVEVASIFEQDEMIDVIAVTKGKGFSGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K+YR+G+G T
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKVYRVGSG--T 290
Query: 434 KDGKVS 439
+G S
Sbjct: 291 DEGNAS 296
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/116 (67%), Positives = 90/116 (77%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 226 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
S + NAST++D+++K+ITPMGGF YGEV NDF+M+KG G KKRV+TLRK
Sbjct: 286 VGSGTDEGNASTEFDVSKKTITPMGGFVRYGEVKNDFVMVKGSVPGVKKRVMTLRK 341
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLME+Q+NGGSVA+K+ +A E+P+ V +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEVQINGGSVAEKVEFASGLFEKPVEVASIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKGKGF
Sbjct: 220 AVTKGKGF 227
>gi|358399714|gb|EHK49051.1| hypothetical protein TRIATDRAFT_297774 [Trichoderma atroviride IMI
206040]
Length = 391
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTATMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKE+VEAV+I++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKANKKEVVEAVSIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK D G TI ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSDNSG-STITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVA+K+ + + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVAEKVDFGKDLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDE+ID I VTKG GF G
Sbjct: 205 SIDSIFEQDEVIDVIAVTKGHGFSG 229
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVA+K+ + + E+P+ + +F QDE+ID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQINGGSVAEKVDFGKDLFEKPVSIDSIFEQDEVIDVIAVTKGHGFSGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ+GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQEGYHHRTSVNHKVYRIGKG 289
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 91/116 (78%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ+GYHHRT + +
Sbjct: 226 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQEGYHHRTSVNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++AST+ D+T+K ITP+GGF YGEVNNDF+M+KG G KKRV+TLRK
Sbjct: 286 IGKGDAEDSASTETDVTKKKITPLGGFVRYGEVNNDFVMVKGSIPGTKKRVVTLRK 341
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVA+K+ + + E+P+ + +F QDE+ID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVAEKVDFGKDLFEKPVSIDSIFEQDEVIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|115487526|ref|NP_001066250.1| Os12g0167900 [Oryza sativa Japonica Group]
gi|548770|sp|P35684.2|RL3_ORYSJ RecName: Full=60S ribosomal protein L3
gi|303853|dbj|BAA02155.1| ribosomal protein L3 [Oryza sativa Japonica Group]
gi|77553113|gb|ABA95909.1| 60S ribosomal protein L3, putative, expressed [Oryza sativa
Japonica Group]
gi|113648757|dbj|BAF29269.1| Os12g0167900 [Oryza sativa Japonica Group]
gi|125578626|gb|EAZ19772.1| hypothetical protein OsJ_35352 [Oryza sativa Japonica Group]
gi|146141390|tpg|DAA01059.1| TPA_inf: ribosomal protein L3A [Oryza sativa (japonica
cultivar-group)]
gi|146141404|tpg|DAA01151.1| TPA_inf: ribosomal protein L3A [Oryza sativa (japonica
cultivar-group)]
gi|215686363|dbj|BAG87624.1| unnamed protein product [Oryza sativa Japonica Group]
gi|403081497|gb|AFR23065.1| hypothetical protein [Oryza sativa]
Length = 389
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FPKDD +KP HLT+F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLRS +VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 107/156 (68%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y S + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMI
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMI 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|444727301|gb|ELW67802.1| 60S ribosomal protein L3-like protein [Tupaia chinensis]
Length = 927
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 161/272 (59%), Positives = 203/272 (74%), Gaps = 14/272 (5%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHALREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E V+AVTI+ETPP+V+VGV+GYV TP GLRSFKTV+AEH+S ECRRRFYK+
Sbjct: 62 RPGLKISKREEVDAVTIVETPPLVVVGVVGYVATPRGLRSFKTVFAEHISDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS-- 216
W++S++KAFTKA ++W+D G+K + +D M KYC+VIRVI HTQ + +
Sbjct: 122 WHRSKKKAFTKACRRWRDCDGRKQLQKDFAAMRKYCRVIRVIVHTQAPACGHVEGDREGP 181
Query: 217 -----HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 271
H Q + + P QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+
Sbjct: 182 GALAGHVAPQVVVLGLTVLCP-------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQ 234
Query: 272 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LE+ +PV VF+Q E+ID I VTKG+G KG
Sbjct: 235 ARLEKQVPVHSVFSQSEVIDVIAVTKGRGIKG 266
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 204 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 263
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 264 IKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 323
Query: 428 GAGIHTKDGKV 438
G G+HT+DGK+
Sbjct: 324 GRGLHTQDGKI 334
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 107/139 (76%), Gaps = 11/139 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 267 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 324
Query: 498 -------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+++NNAST YD+T+K+ITP+GGFPHYG+VNNDF+M+KGC G KKRVITLR
Sbjct: 325 RGLHTQDGKIVRNNASTSYDVTDKAITPLGGFPHYGDVNNDFVMLKGCIAGTKKRVITLR 384
Query: 551 KMKLLKKRQKKAHLMEIQL 569
K L+ ++ +E++
Sbjct: 385 KSLLVHHSRRALEDIELKF 403
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 610
+MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+
Sbjct: 203 QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGR 262
Query: 611 GFK 613
G K
Sbjct: 263 GIK 265
>gi|358386834|gb|EHK24429.1| hypothetical protein TRIVIDRAFT_79029 [Trichoderma virens Gv29-8]
Length = 391
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKE+VEAV+I++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKANKKEVVEAVSIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK D G +I ++L ++ KYC V+R++AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSDNSGA-SINRELERIKKYCTVVRILAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVA+K+ + + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVAEKVDFGKDLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDE+ID I VTKG GF G
Sbjct: 205 SIDSIFEQDEVIDVIAVTKGHGFSG 229
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVA+K+ + + E+P+ + +F QDE+ID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQVNGGSVAEKVDFGKDLFEKPVSIDSIFEQDEVIDVIAVTKGHGFSGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ+GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQEGYHHRTSVNHKVYRIGKG 289
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 90/116 (77%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ+GYHHRT + +
Sbjct: 226 GFSGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQEGYHHRTSVNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+NASTD D+T+K ITP+GGF YGE+NNDF+M+KG G KKRV+TLRK
Sbjct: 286 IGKGDADDNASTDIDVTKKKITPLGGFVRYGEINNDFVMVKGSIPGTKKRVVTLRK 341
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
+N + IK C R++ +++ +QKKAHLMEIQ+NGGSVA+K+ + +
Sbjct: 143 ASINRELERIKKYCT--VVRILAHTQIRKTPLKQKKAHLMEIQVNGGSVAEKVDFGKDLF 200
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGF 612
E+P+ + +F QDE+ID I VTKG GF
Sbjct: 201 EKPVSIDSIFEQDEVIDVIAVTKGHGF 227
>gi|212721340|ref|NP_001131208.1| uncharacterized protein LOC100192516 [Zea mays]
gi|194690876|gb|ACF79522.1| unknown [Zea mays]
gi|414866108|tpg|DAA44665.1| TPA: hypothetical protein ZEAMMB73_480377 [Zea mays]
gi|414866109|tpg|DAA44666.1| TPA: hypothetical protein ZEAMMB73_480377 [Zea mays]
Length = 389
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 190/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FP+DD KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDAKKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+++ GKK I L KM KY VIRVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 106/130 (81%), Gaps = 3/130 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G-AGIHTKDG 436
G AG T D
Sbjct: 289 GKAGQETHDA 298
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMI
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMI 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|224082478|ref|XP_002306708.1| predicted protein [Populus trichocarpa]
gi|118481111|gb|ABK92509.1| unknown [Populus trichocarpa]
gi|222856157|gb|EEE93704.1| predicted protein [Populus trichocarpa]
Length = 389
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 191/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDPTKP LT+F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPTKPCKLTSFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+GY++TP GLR+ TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPMVIVGVVGYLKTPSGLRTLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAF K SK+++ GKK+I L K+ KY VIRV+AHTQ ++
Sbjct: 122 WCKSKKKAFAKYSKQYETDEGKKSIQSQLEKLKKYATVIRVLAHTQIRK----------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +
Sbjct: 171 ----------------------MKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDVIGVTKGKGYEG 231
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDVIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKV 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + + A T+YD TEK ITP+GGFPHYG V +D+LMIKGCC+GPKKRV
Sbjct: 281 -LNKKIYKVGKVGQETHTAITEYDRTEKDITPLGGFPHYGVVKDDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LLK+ + A L EI+L + K R Q
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEEIKLKFVDTSSKFGHGRFQTTQ 378
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDVIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|452846836|gb|EME48768.1| hypothetical protein DOTSEDRAFT_67718 [Dothistroma septosporum
NZE10]
Length = 392
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR++RHRGKVK FPKDD + HLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRASRHRGKVKSFPKDDQKQKPHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVT++ETPPMV+VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKLHKKEIVEAVTVIETPPMVVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G K I +DL ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKHAEE-GGKNITRDLERIKKYCTVVRVLAHTQIHKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDEMIDCI VTKG GF+G
Sbjct: 205 EIDSVFEQDEMIDCIAVTKGHGFQG 229
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ + E+P+ + VF QDEMIDCI VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVEFGHGLFEKPVEIDSVFEQDEMIDCIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRVGKG 289
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 93/129 (72%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRVGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+TD+D + K ITPMGGF YGEV NDF+++KG G KKRV+TLRK + +
Sbjct: 290 SDERNATTDFDHSNKQITPMGGFVRYGEVKNDFVLLKGSVPGVKKRVMTLRKSMFIHTSR 349
Query: 560 KKAHLMEIQ 568
+ +E++
Sbjct: 350 RALEKVELK 358
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C RV+ ++ +QKKAHLMEIQ+NGGS+ADK+ + E+
Sbjct: 145 ITRDLERIKKYCTVV--RVLAHTQIHKTPLKQKKAHLMEIQVNGGSIADKVEFGHGLFEK 202
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
P+ + VF QDEMIDCI VTKG GF+
Sbjct: 203 PVEIDSVFEQDEMIDCIAVTKGHGFQ 228
>gi|291415728|ref|XP_002724100.1| PREDICTED: ribosomal protein L3-like [Oryctolagus cuniculus]
Length = 407
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSRPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKTV+AEHLS ECRRRFY++
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTVFAEHLSDECRRRFYRD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W++S++KAFTKA ++W+D GK+ + +D M KYCKVIRVI HT
Sbjct: 122 WHRSKKKAFTKACRRWRDADGKRQLQRDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H++DGK+
Sbjct: 288 GRGLHSQDGKM 298
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 108/143 (75%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y ++KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHSQDGKMVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRRALENIELKF 367
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQRDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|453089521|gb|EMF17561.1| 60S ribosomal protein L3 [Mycosphaerella populorum SO2202]
Length = 392
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP + HLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKQKCHLTATMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEA T++ETPP+++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKLHKKEIVEACTVIETPPIIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G K+I +DL ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKHAEESG-KSITRDLERIKKYCTVVRVLAHTQISKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDEMIDCI VTKG G++G
Sbjct: 205 EIDSVFEQDEMIDCIAVTKGHGYQG 229
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/135 (67%), Positives = 108/135 (80%), Gaps = 3/135 (2%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ + E+P+ + VF QDEMIDCI VTKG G++GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVEFGHGLFEKPVEIDSVFEQDEMIDCIAVTKGHGYQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G +
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG--S 290
Query: 434 KDGKVSVTSRWHTKK 448
DG + T H+KK
Sbjct: 291 DDGNAT-TDFDHSKK 304
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 94/133 (70%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GYQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
NA+TD+D ++K ITPMGGF YGEV NDF+++KG G KKRV+TLRK +
Sbjct: 286 IGKGSDDGNATTDFDHSKKQITPMGGFVRYGEVKNDFVLLKGSVPGVKKRVMTLRKSMFI 345
Query: 556 KKRQKKAHLMEIQ 568
++ +E++
Sbjct: 346 HTSRRALEKVELK 358
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C RV+ ++ +QKKAHLMEIQ+NGGS+ADK+ + E+
Sbjct: 145 ITRDLERIKKYCTVV--RVLAHTQISKTPLKQKKAHLMEIQVNGGSIADKVEFGHGLFEK 202
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
P+ + VF QDEMIDCI VTKG G++
Sbjct: 203 PVEIDSVFEQDEMIDCIAVTKGHGYQ 228
>gi|402217655|gb|EJT97735.1| 60S ribosomal protein L3 [Dacryopinax sp. DJM-731 SS1]
Length = 395
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG++GF P+KR+ARHRGKVK FPKDDP K HLTA + YKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGNLGFLPRKRAARHRGKVKSFPKDDPKKKPHLTAAMAYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVTILETPPM++VGV+GYVETP GLRS TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTILETPPMIVVGVVGYVETPRGLRSLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFT+ +KK + G K+IA++L ++ KYC V+RV+AHTQ + L
Sbjct: 122 WYKSKKKAFTRYAKKHAEN-GGKSIARELERIRKYCTVVRVLAHTQLSKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
RQKKAHLMEIQ+NGGSV +K+ +A+ E+P+
Sbjct: 173 ----------------------------RQKKAHLMEIQVNGGSVGEKVDFAKGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDE +D I VTKG GF+G
Sbjct: 205 EISTIFEQDECVDVIAVTKGHGFEG 229
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
RQKKAHLMEIQ+NGGSV +K+ +A+ E+P+ + +F QDE +D I VTKG GF+GVT
Sbjct: 173 RQKKAHLMEIQVNGGSVGEKVDFAKGLFEKPVEISTIFEQDECVDVIAVTKGHGFEGVTH 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TK+LPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G
Sbjct: 233 RWGTKRLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 99/130 (76%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TK+LPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 230 VTHRWGTKRLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
++NAST+ D T+K+ITPMGGFPHYG V ND+LM+KG G KKRVIT+RK ++ +
Sbjct: 290 ADESNASTEADTTKKTITPMGGFPHYGIVKNDYLMLKGSIPGTKKRVITIRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L +IQL
Sbjct: 350 RD--LEQIQL 357
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ RQKKAHLMEIQ+NGGSV +K+ +A+ E+P+ + +F QDE +D I
Sbjct: 160 RVLAHTQLSKTGLRQKKAHLMEIQVNGGSVGEKVDFAKGLFEKPVEISTIFEQDECVDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|255653009|ref|NP_001157417.1| ribosomal protein L3-like isoform 1 [Mus musculus]
Length = 407
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/265 (60%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKSWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AW + +E+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AW + +E+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 288 GRGLHMEDGKM 298
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M +++NNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YRIGRGLHMEDGKMVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRRALENIELKF 367
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AW + +E
Sbjct: 145 QLQKDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARME 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|255566636|ref|XP_002524302.1| 60S ribosomal protein L3, putative [Ricinus communis]
gi|223536393|gb|EEF38042.1| 60S ribosomal protein L3, putative [Ricinus communis]
Length = 389
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 191/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++R RGKVK FPKDDPTKP LTAF+GYKAGMTHI+RE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRQRGKVKAFPKDDPTKPCKLTAFLGYKAGMTHIMREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+GYV+TP GLRS TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVIVGVVGYVKTPRGLRSLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK S++ + + GKK+I L KM KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSRQLETEEGKKSIQAQLEKMKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/123 (68%), Positives = 102/123 (82%), Gaps = 2/123 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKL 288
Query: 428 GAG 430
G G
Sbjct: 289 GKG 291
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 108/162 (66%), Gaps = 9/162 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK + + A T+YD TEK ITP+GGFPHYG V +D+LMIKGCC+GPKKR
Sbjct: 282 ---NKKIYKLGKGGQESHTAITEYDRTEKDITPIGGFPHYGVVKDDYLMIKGCCVGPKKR 338
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
V+TLR+ LLK+ + A L EI+L + K R Q
Sbjct: 339 VVTLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|367054940|ref|XP_003657848.1| 60S ribosomal protein L3 [Thielavia terrestris NRRL 8126]
gi|347005114|gb|AEO71512.1| hypothetical protein THITE_2123969 [Thielavia terrestris NRRL 8126]
Length = 392
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKEIVEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEIVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENNGA-SITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVDFGYGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF G
Sbjct: 205 SIDTIFEKDEMIDVIAVTKGHGFVG 229
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F +DEMID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSVADKVDFGYGLFEKPVSIDTIFEKDEMIDVIAVTKGHGFVGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 96/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFVGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+NA+T+ D+T+K ITPMGGF YGEVNND++M+KG G KKRV+TLRK
Sbjct: 286 IGKGDADDNAATEVDVTKKKITPMGGFVRYGEVNNDYVMVKGSVPGVKKRVMTLRKSMFT 345
Query: 556 KKRQKKAHLMEIQ 568
+K +E++
Sbjct: 346 HTSRKALEKVELK 358
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVDFGYGLFEKPVSIDTIFEKDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|358055153|dbj|GAA98922.1| hypothetical protein E5Q_05610 [Mixia osmundae IAM 14324]
Length = 387
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 196/265 (73%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDPKKPVHLTAFMGYKAGMTHIVRELE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVEAVTI+ETPP+ +VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKKEIVEAVTIIETPPVNVVGVVGYVETPRGLRSLTTVWAEHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK +KK + G ++++++ ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTKYAKKHAE--GGASVSREMERIKKYCTVVRVLAHTQIRKTGL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ +A+ H E+PI
Sbjct: 172 ----------------------------KQKKAHLMEIQINGGSIADKVDFAKSHFEKPI 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QD+ ID IGVTKGKGF+G
Sbjct: 204 EVSAVFEQDQNIDIIGVTKGKGFEG 228
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/123 (73%), Positives = 105/123 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ +A+ H E+PI V VF QD+ ID IGVTKGKGF+GVT
Sbjct: 172 KQKKAHLMEIQINGGSIADKVDFAKSHFEKPIEVSAVFEQDQNIDIIGVTKGKGFEGVTH 231
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTE NKKIYR+G+G
Sbjct: 232 RWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTEKNKKIYRIGSGADD 291
Query: 434 KDG 436
K+
Sbjct: 292 KNA 294
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 101/153 (66%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTE
Sbjct: 219 GVTKGKGFEGVTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTEK 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ S NAST+YD T K+ITPMGGF YG V NDF++IKG C+G KKR++TL
Sbjct: 279 NKKIYRIGSGADDKNASTEYDTTSKAITPMGGFVRYGVVKNDFVLIKGSCVGVKKRILTL 338
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
R+ L+ + L ++QL + K R
Sbjct: 339 RQS--LQIHSSRKDLEKVQLKMIDTSSKFGHGR 369
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 54/73 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ADK+ +A+ H E+PI V VF QD+ ID I
Sbjct: 159 RVLAHTQIRKTGLKQKKAHLMEIQINGGSIADKVDFAKSHFEKPIEVSAVFEQDQNIDII 218
Query: 605 GVTKGKGFKECVH 617
GVTKGKGF+ H
Sbjct: 219 GVTKGKGFEGVTH 231
>gi|346972435|gb|EGY15887.1| 60S ribosomal protein L3 [Verticillium dahliae VdLs.17]
Length = 391
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAV+I++TPPMV+VG++GY+ETP GLRS TVWAEHLS E RRRFY+N
Sbjct: 62 RPGAKAHKKEVVEAVSIIDTPPMVVVGIVGYIETPRGLRSLTTVWAEHLSDEVRRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I +++ ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSESSG-ASITREIERIKKYCSVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+ +
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFGYGLFEKEV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDEMID I VTKGKGF G
Sbjct: 205 SVDTIFEQDEMIDVIAVTKGKGFNG 229
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/115 (73%), Positives = 95/115 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+ + V +F QDEMID I VTKGKGF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFGYGLFEKEVSVDTIFEQDEMIDVIAVTKGKGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIA 287
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 90/112 (80%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIAKA 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++AST+ D+T+K ITP+GGF YGE+NNDF+M+KG GPKKRV+TLRK
Sbjct: 290 GAEDSASTELDVTKKVITPLGGFVRYGEINNDFVMVKGSIPGPKKRVVTLRK 341
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+ + V +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFGYGLFEKEVSVDTIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKGKGF
Sbjct: 220 AVTKGKGF 227
>gi|119190755|ref|XP_001245984.1| 60S ribosomal protein L3 [Coccidioides immitis RS]
gi|303315241|ref|XP_003067628.1| 60S ribosomal protein L3 [Coccidioides posadasii C735 delta SOWgp]
gi|240107298|gb|EER25483.1| 60S ribosomal protein L3, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035569|gb|EFW17510.1| 60S ribosomal protein L3 [Coccidioides posadasii str. Silveira]
gi|392868822|gb|EAS34621.2| 60S ribosomal protein L3 [Coccidioides immitis RS]
Length = 392
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KRSARHRGKVK FPKDDP KPVHLTA +GYKAGMT VR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRSARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTTVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPPM+ VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTIIETPPMIAVGIVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K + + G ++ ++L ++ KYC V+R++AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKSYSENKG-ASVTRELERIKKYCTVVRLLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSV +K+ +A E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVPEKVDFAHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDEMID I VTKG GF+G
Sbjct: 205 EIDSVFEQDEMIDVIAVTKGHGFQG 229
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 98/117 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSV +K+ +A E+PI + VF QDEMID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVPEKVDFAHGLFEKPIEIDSVFEQDEMIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKIYRIGKG 289
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 96/129 (74%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKIYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NASTD+D+++K ITPMGGF YGEV NDF+++KG C G KKRV+TLRK + +
Sbjct: 290 SDEGNASTDFDVSKKQITPMGGFVRYGEVKNDFIILKGSCPGVKKRVLTLRKTLFPQVSR 349
Query: 560 KKAHLMEIQ 568
K +E++
Sbjct: 350 KALEKVELK 358
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLMEIQ+NGGSV +K+ +A E+PI + VF QDEMID I VTK
Sbjct: 167 IRKTPL---KQKKAHLMEIQVNGGSVPEKVDFAHGLFEKPIEIDSVFEQDEMIDVIAVTK 223
Query: 609 GKGFK 613
G GF+
Sbjct: 224 GHGFQ 228
>gi|226475930|emb|CAX72055.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 217
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/252 (58%), Positives = 181/252 (71%), Gaps = 36/252 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ I
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQI 205
Query: 279 PVGQVFAQDEMI 290
PV VF+QDEMI
Sbjct: 206 PVSNVFSQDEMI 217
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 146 INRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 203
Query: 588 PIPVGQVFAQDEMI 601
IPV VF+QDEMI
Sbjct: 204 QIPVSNVFSQDEMI 217
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 357
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMI
Sbjct: 168 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMI 217
>gi|116783991|gb|ABK23172.1| unknown [Picea sitchensis]
Length = 389
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FP+DDP+KP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVT++ETPPMVIVGV+GY++TP GLR+ VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTLIETPPMVIVGVVGYIKTPRGLRTLNAVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY++++KAFTK +KK+ + GKK I +L KM KY VIRV+AHTQ +
Sbjct: 122 WYRAKKKAFTKYAKKYDSEEGKKEIQTELEKMKKYATVIRVLAHTQIK------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK Q KAHLMEIQ+NGG+V K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QNKAHLMEIQVNGGTVPQKVDYAYNFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +F +DEMID IGVTKGKG++G
Sbjct: 207 PIDALFQKDEMIDVIGVTKGKGYEG 231
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK Q KAHLMEIQ+NGG+V K+ +A E+ +P+ +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QNKAHLMEIQVNGGTVPQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKI 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 108/157 (68%), Gaps = 9/157 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSMVIKN----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK + K+ NA T++D TEK ITPMGGFPHYG V +D++MI+GCCMG KKR
Sbjct: 282 ---NKKIYKIGKKDQESHNAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKR 338
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
V+TLR+ LLK+ + A L EI+L + K R
Sbjct: 339 VVTLRQ-SLLKQTSRTA-LEEIKLKFIDTSSKFGHGR 373
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
++KMK LK Q KAHLMEIQ+NGG+V K+ +A E+ +P+ +F +DEMID IGVTK
Sbjct: 168 IKKMKGLK--QNKAHLMEIQVNGGTVPQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|154301761|ref|XP_001551292.1| 60S ribosomal protein L3 [Botryotinia fuckeliana B05.10]
gi|347828492|emb|CCD44189.1| similar to 60S ribosomal protein l3 [Botryotinia fuckeliana]
Length = 392
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ + P+KR++RHRGKVK FPKDD TKPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAYLPRKRASRHRGKVKSFPKDDKTKPVHLTATLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVT++ETPP+++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKTHKKEVVEAVTVIETPPVIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENSGS-SITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVA+K+ +A E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVAEKVDFASGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDEMID I VTKG GF G
Sbjct: 205 EISSIFEQDEMIDVIAVTKGHGFSG 229
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVA+K+ +A E+P+ + +F QDEMID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVAEKVDFASGLFEKPVEISSIFEQDEMIDVIAVTKGHGFSGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQDGYHHRTSCNHKVYRIGRG 289
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 98/136 (72%), Gaps = 6/136 (4%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT C K
Sbjct: 226 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQDGYHHRTS---CNHK 282
Query: 496 YLSM---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ NNA+T++D+++K+ITPMGGF YGEV NDF+M+KG G KKRV+TLRK
Sbjct: 283 VYRIGRGDDPNNAATEFDVSKKAITPMGGFVRYGEVKNDFIMLKGSVPGVKKRVMTLRKS 342
Query: 553 KLLKKRQKKAHLMEIQ 568
+ +K +E++
Sbjct: 343 MFVHTSRKALEKVELK 358
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVA+K+ +A E+P+ + +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVAEKVDFASGLFEKPVEISSIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|350539715|ref|NP_001233997.1| ribosomal protein L3 [Solanum lycopersicum]
gi|38327504|gb|AAR17783.1| ribosomal protein L3 [Solanum lycopersicum]
Length = 389
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 156/265 (58%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+KP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+GYV+TP GLR TVWA+HLS++ +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPMVIVGVVGYVKTPRGLRCLNTVWAQHLSEDIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAF K SKK++ GKK I L K+ KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFLKYSKKYETDEGKKDIQAQLEKLKKYACVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGSIAQKVDFAYGFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +PV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGSIAQKVDFAYGFFEKQVPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 108/161 (67%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY-LSMVIKNN--ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y L V + + A T++D TEK ITP+GGFPHYG V D+L+IKGCC+G KKRV
Sbjct: 281 -MNKKVYKLGKVGQESHTALTEFDRTEKDITPIGGFPHYGVVKEDYLLIKGCCVGTKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LL + + A L EI+L + K R Q
Sbjct: 340 VTLRQ-SLLNQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +PV VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGSIAQKVDFAYGFFEKQVPVDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|171689180|ref|XP_001909530.1| hypothetical protein [Podospora anserina S mat+]
gi|170944552|emb|CAP70663.1| unnamed protein product [Podospora anserina S mat+]
Length = 392
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 186/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDMD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKE+VEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKANKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENSGA-SITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF G
Sbjct: 205 SIDTIFEKDEMIDVIAVTKGHGFSG 229
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F +DEMID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDTIFEKDEMIDVIAVTKGHGFSGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 96/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFSGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+NA+T+ D+T+K+ITPMGGF YGE+ NDF+M+KG G KKR++TLRK +
Sbjct: 286 IGKGDADDNAATEIDVTKKTITPMGGFVRYGEIKNDFVMVKGSVPGTKKRIMTLRKSMFI 345
Query: 556 KKRQKKAHLMEIQ 568
+K +E++
Sbjct: 346 HTSRKALEKVELK 358
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDTIFEKDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|82623411|gb|ABB87120.1| ribosomal protein L3-like [Solanum tuberosum]
Length = 389
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 156/265 (58%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+KP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+GYV+TP GLR TVWA+HLS++ +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPMVIVGVVGYVKTPRGLRCLNTVWAQHLSEDIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAF K SKK++ GKK I L K+ KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFLKYSKKYETDEGKKDIQAQLEKLKKYACVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGSIAQKVDFAYGFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +PV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGSIAQKVDFAYGFFEKQVPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY-LSMVIKNN--ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y L V + + A T++D TEK ITP+GGF HYG V +D+L+IKGCC+GPKKRV
Sbjct: 281 -MNKKVYKLGKVGQESHTAVTEFDRTEKEITPIGGFAHYGVVKDDYLLIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LL + + A L EI+L + K R Q
Sbjct: 340 VTLRQ-SLLNQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGGS+A K+ +A E+ +PV VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGSIAQKVDFAYGFFEKQVPVDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|302412909|ref|XP_003004287.1| 60S ribosomal protein L3 [Verticillium albo-atrum VaMs.102]
gi|261356863|gb|EEY19291.1| 60S ribosomal protein L3 [Verticillium albo-atrum VaMs.102]
Length = 391
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAV+I++TPPMV+VG++GY+ETP GLRS TVWAEHLS E RRRFY+N
Sbjct: 62 RPGAKAHKKEVVEAVSIIDTPPMVVVGLVGYIETPRGLRSLATVWAEHLSDEVRRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I +++ ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSESSG-ASITREIERIKKYCSVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+ +
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFGYGLFEKEV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDEMID I VTKGKGF G
Sbjct: 205 SVDSIFEQDEMIDVIAVTKGKGFNG 229
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/115 (73%), Positives = 95/115 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+ + V +F QDEMID I VTKGKGF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFGYGLFEKEVSVDSIFEQDEMIDVIAVTKGKGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIA 287
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 90/112 (80%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIAKA 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++AST+ D+T+K ITP+GGF YGE+NNDF+M+KG GPKKRV+TLRK
Sbjct: 290 GAEDSASTELDVTKKVITPLGGFVRYGEINNDFVMVKGSIPGPKKRVVTLRK 341
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+ + V +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFGYGLFEKEVSVDSIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKGKGF
Sbjct: 220 AVTKGKGF 227
>gi|406864005|gb|EKD17051.1| 60S ribosomal protein L3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 392
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVT++ETPP+++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKTHKKEVVEAVTVIETPPVIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTKYAKKHSESSG-SSITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDEMID I VTKG GF G
Sbjct: 205 EISSIFEQDEMIDVIAVTKGHGFSG 229
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 95/117 (81%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F QDEMID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVEFGHGLFEKPVEISSIFEQDEMIDVIAVTKGHGFSGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP VQ+TVARAGQ GYHHRT N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPCHVQWTVARAGQDGYHHRTSCNHKVYRIGKG 289
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 95/136 (69%), Gaps = 6/136 (4%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHP VQ+TVARAGQ GYHHRT C K
Sbjct: 226 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPCHVQWTVARAGQDGYHHRTS---CNHK 282
Query: 496 YLSM---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ + NA+TD+D+ +K ITPMGGF YGEV NDF+++KG G +KRV+TLRK
Sbjct: 283 VYRIGKGDDEGNATTDFDVGKKQITPMGGFVRYGEVKNDFVIVKGSVPGVRKRVMTLRKS 342
Query: 553 KLLKKRQKKAHLMEIQ 568
+ +K +E++
Sbjct: 343 MFVHTSRKALEKVELK 358
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F QDEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVEFGHGLFEKPVEISSIFEQDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|224066623|ref|XP_002302168.1| predicted protein [Populus trichocarpa]
gi|118483469|gb|ABK93633.1| unknown [Populus trichocarpa]
gi|222843894|gb|EEE81441.1| predicted protein [Populus trichocarpa]
Length = 389
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP KP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPNKPCKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+GY++TP GLR+ TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVIVGVVGYLKTPSGLRTLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS+++AF K SK+++ GKK+I L K+ KY VIRV+AHTQ +
Sbjct: 122 WCKSKKRAFNKYSKQYETDEGKKSIQSQLEKLKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 110/161 (68%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY-LSMVIK--NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y L + + A T+YD TEK ITP+GGFPHYG V +D+LMIKGCC+GPKKRV
Sbjct: 281 -LNKKIYKLGKTGQECHTAITEYDRTEKDITPIGGFPHYGVVKDDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LLK+ + AH EI+L + K R Q
Sbjct: 340 VTLRQT-LLKQTSRLAH-EEIKLKFVDTSSKFGHGRFQTTQ 378
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|330907574|ref|XP_003295853.1| 60S ribosomal protein L3 [Pyrenophora teres f. teres 0-1]
gi|311332456|gb|EFQ96051.1| hypothetical protein PTT_03505 [Pyrenophora teres f. teres 0-1]
Length = 392
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 186/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEA T++ETPPM+ VG++GY+ETP GLRS TVWAEHLS E +RRFY+N
Sbjct: 62 RPGAKLHKKEIVEACTVIETPPMIAVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G ++I ++L +M KYC VIRV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKHSEENG-QSITRELERMKKYCTVIRVLAHTQISKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+A E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSIADKVAHGHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +EMID I VTKG G+ G
Sbjct: 205 EISSIFEANEMIDVIAVTKGHGYNG 229
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 95/115 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+A E+PI + +F +EMID I VTKG G+ GVTS
Sbjct: 173 KQKKAHLMEIQINGGSIADKVAHGHGLFEKPIEISSIFEANEMIDVIAVTKGHGYNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N KIYR+G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQMGYHHRTSVNHKIYRIG 287
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 97/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GYNGVTSRWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQMGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ NAST++D+++K ITPMGGF YGEV NDF+++KG C G KKRV+TLRK +
Sbjct: 286 IGKADDEGNASTEFDVSKKRITPMGGFVRYGEVKNDFVLLKGNCPGVKKRVVTLRKSMFI 345
Query: 556 KKRQKKAHLMEIQ 568
++ +E++
Sbjct: 346 HTSRRALEKVELK 358
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLMEIQ+NGGS+ADK+A E+PI + +F +EMID I
Sbjct: 160 RVLAHTQISKTPLKQKKAHLMEIQINGGSIADKVAHGHGLFEKPIEISSIFEANEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG G+
Sbjct: 220 AVTKGHGY 227
>gi|255642195|gb|ACU21362.1| unknown [Glycine max]
Length = 389
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 191/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+K LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+ETPPMVIVGV+GYV+TP GLR+ TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SK+++ + GKK I L K+ KY V+RV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKQYETEEGKKNIEAQLEKLKKYATVVRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A LE+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHIMEIQVNGGTIAQKVDFAYSFLEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 99/115 (86%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGG++A K+ +A LE+ +P+ VF +DEMID IGVTKGKG++GV +
Sbjct: 175 KQKKAHIMEIQVNGGTIAQKVDFAYSFLEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKK+Y++G
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKLG 289
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 107/162 (66%), Gaps = 9/162 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTEL
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEL 281
Query: 490 FLCKKKYLSMVIKNNAS----TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK + + S T++D TEK ITP+GGFPHYG V +D++M+KGCC+G KKR
Sbjct: 282 ---NKKVYKLGKAGDESHSALTEFDRTEKDITPIGGFPHYGVVKDDYIMVKGCCVGLKKR 338
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
VITLR+ LLK+ + A L EI+L + K R Q
Sbjct: 339 VITLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A LE+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHIMEIQVNGGTIAQKVDFAYSFLEKQVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|115484365|ref|NP_001065844.1| Os11g0168200 [Oryza sativa Japonica Group]
gi|62701923|gb|AAX92996.1| ribosomal protein L3, putative [Oryza sativa Japonica Group]
gi|62734368|gb|AAX96477.1| ribosomal protein L3, putative [Oryza sativa Japonica Group]
gi|77548788|gb|ABA91585.1| 60S ribosomal protein L3, putative, expressed [Oryza sativa
Japonica Group]
gi|113644548|dbj|BAF27689.1| Os11g0168200 [Oryza sativa Japonica Group]
gi|125533541|gb|EAY80089.1| hypothetical protein OsI_35258 [Oryza sativa Indica Group]
gi|125576343|gb|EAZ17565.1| hypothetical protein OsJ_33102 [Oryza sativa Japonica Group]
gi|146141406|tpg|DAA01152.1| TPA_inf: ribosomal protein L3B [Oryza sativa (japonica
cultivar-group)]
gi|146141408|tpg|DAA01150.1| TPA_inf: ribosomal protein L3B [Oryza sativa]
gi|215706975|dbj|BAG93435.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715327|dbj|BAG95078.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 389
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FPKDD KP HLT+F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+V+VG++ YV+TP GLRS +VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY V+RVI HTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 107/156 (68%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y S + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMI
Sbjct: 161 RVIVHTQIRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMI 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|344228878|gb|EGV60764.1| 60S ribosomal protein L3 [Candida tenuis ATCC 10573]
Length = 388
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 187/265 (70%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P+KR+ARH+GK+K FPKD+ +KPV LTAF+GYKAGMT +VR+ D
Sbjct: 2 SHRKFEAPRHGSLGFLPRKRAARHQGKIKSFPKDNKSKPVSLTAFLGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPP+VIVGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPLVIVGVVGYVETPRGLRSLTTVWAEHLSEEIRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ +I ++L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSGKYAKD--PASIERELARINKYASVVRVLAHTQIKKTPLS------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGSVADK+AWA++H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQINGGSVADKVAWAQEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF EMID I VTKG GF+G
Sbjct: 204 SVDSVFEDGEMIDAIAVTKGHGFEG 228
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 97/125 (77%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGSVADK+AWA++H E+ + V VF EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQINGGSVADKVAWAQEHFEKTVSVDSVFEDGEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKAGDES 292
Query: 435 DGKVS 439
G S
Sbjct: 293 SGATS 297
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 83/112 (74%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKA 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++ +T YD T K+I PMGGF YG VNNDF+M+KG G +KR++TLRK
Sbjct: 289 GDESSGATSYDRTVKNINPMGGFVRYGLVNNDFIMVKGSIPGTRKRIVTLRK 340
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGSVADK+AWA++H E+ + V VF EMID I
Sbjct: 159 RVLAHTQIKKTPLSQKKAHLAEIQINGGSVADKVAWAQEHFEKTVSVDSVFEDGEMIDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|344292026|ref|XP_003417729.1| PREDICTED: 60S ribosomal protein L3-like [Loxodonta africana]
Length = 579
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 161/266 (60%), Positives = 196/266 (73%), Gaps = 36/266 (13%)
Query: 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREA 97
+SHRKFSAPRHG +GF P KRS+RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 173 SSHRKFSAPRHGHLGFLPHKRSSRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 232
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV T GLRSFKT++AEHLS ECRRRFYK
Sbjct: 233 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATTRGLRSFKTIFAEHLSDECRRRFYK 292
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
+W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 293 DWHKSKKKAFTKACKRWRDPDGKKQLQKDFAAMKKYCKVIRVIVHT-------------- 338
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+
Sbjct: 339 ----------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAWLEKQ 376
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PV VF+Q E+ID I VTKG+G KG
Sbjct: 377 VPVHSVFSQSEIIDVIAVTKGRGIKG 402
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 114/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 340 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAWLEKQVPVHSVFSQSEIIDVIAVTKGRG 399
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIY +
Sbjct: 400 IKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYCI 459
Query: 428 GAGIHTKDGKV 438
G G H ++GK+
Sbjct: 460 GRGPHMEEGKL 470
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 111/155 (71%), Gaps = 9/155 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL---FLCKKKY 496
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTEL C +
Sbjct: 403 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYCIGRG 462
Query: 497 LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
M +++NNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLRK
Sbjct: 463 PHMEEGKLVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFIMLKGCISGTKKRVITLRK- 521
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
LL ++A L IQL K R Q
Sbjct: 522 SLLVHHSRRA-LENIQLKFVDTTSKFGHGRFQTAQ 555
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 317 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAWLE 374
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 375 KQVPVHSVFSQSEIIDVIAVTKGRGIK 401
>gi|451849886|gb|EMD63189.1| hypothetical protein COCSADRAFT_120340 [Cochliobolus sativus
ND90Pr]
Length = 392
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR++RHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRASRHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEA T++ETPPM+ VG++GY+ETP GLRS TVWAEHLS E +RRFY+N
Sbjct: 62 RPGAKLHKKEIVEACTVIETPPMIAVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G+ +I ++L ++ KYC V+RV+AHTQ +
Sbjct: 122 WYKSKKKAFTKYAKKHSENNGQ-SITRELERIKKYCTVVRVLAHTQISKT---------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
P+Q QKKAHLMEIQ+NGGSVADK+ + E+PI
Sbjct: 171 ---PLQ-----------------------QKKAHLMEIQVNGGSVADKVEFGHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF +EMID I VTKGKGF G
Sbjct: 205 EITSVFEDNEMIDVIAVTKGKGFNG 229
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+PI + VF +EMID I VTKGKGF GVTS
Sbjct: 173 QQKKAHLMEIQVNGGSVADKVEFGHGLFEKPIEITSVFEDNEMIDVIAVTKGKGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQDGYHHRTSVNHKIYRIGKG 289
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQDGYHHRTSVNHKIYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++++KG C G KKRV+TLRK
Sbjct: 290 DDEGNASTDFDVSKKRITPMGGFVRYGEVKNDYVLLKGACPGVKKRVMTLRK 341
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLMEIQ+NGGSVADK+ + E+PI + VF +EMID I
Sbjct: 160 RVLAHTQISKTPLQQKKAHLMEIQVNGGSVADKVEFGHGLFEKPIEITSVFEDNEMIDVI 219
Query: 605 GVTKGKGF 612
VTKGKGF
Sbjct: 220 AVTKGKGF 227
>gi|452001707|gb|EMD94166.1| hypothetical protein COCHEDRAFT_1130499 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR++RHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRASRHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEA T++ETPPM+ VG++GY+ETP GLRS TVWAEHLS E +RRFY+N
Sbjct: 62 RPGAKLHKKEIVEACTVIETPPMIAVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G+ +I ++L ++ KYC V+RV+AHTQ +
Sbjct: 122 WYKSKKKAFTKYAKKHSENNGQ-SITRELERIKKYCTVVRVLAHTQISKT---------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
P+Q QKKAHLMEIQ+NGGSVADK+ + E+PI
Sbjct: 171 ---PLQ-----------------------QKKAHLMEIQVNGGSVADKVEFGHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF +EMID I VTKGKGF G
Sbjct: 205 EITSVFEDNEMIDVIAVTKGKGFNG 229
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+PI + VF +EMID I VTKGKGF GVTS
Sbjct: 173 QQKKAHLMEIQVNGGSVADKVEFGHGLFEKPIEITSVFEDNEMIDVIAVTKGKGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQDGYHHRTSVNHKIYRIGKG 289
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQDGYHHRTSVNHKIYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++++KG C G KKRV+TLRK
Sbjct: 290 DDEGNASTDFDVSKKRITPMGGFVRYGEVKNDYILLKGACPGVKKRVMTLRK 341
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLMEIQ+NGGSVADK+ + E+PI + VF +EMID I
Sbjct: 160 RVLAHTQISKTPLQQKKAHLMEIQVNGGSVADKVEFGHGLFEKPIEITSVFEDNEMIDVI 219
Query: 605 GVTKGKGF 612
VTKGKGF
Sbjct: 220 AVTKGKGF 227
>gi|356535772|ref|XP_003536417.1| PREDICTED: 60S ribosomal protein L3-like [Glycine max]
Length = 389
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+K LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+ETPPMVIVGV+GYV+TP GLR+ TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SK+++ + GKK I L K+ KY V+RV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKQYETEEGKKNIEAQLEKLKKYATVVRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGGS+A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHIMEIQVNGGSIAQKVDFAYSFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGGS+A K+ +A E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHIMEIQVNGGSIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 108/162 (66%), Gaps = 9/162 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTEL
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEL 281
Query: 490 FLCKKKYLSMVIKNNAS----TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK + + S T++D TEK ITPMGGFPHYG V +DF+M+KGCC+GPKKR
Sbjct: 282 ---NKKVYKLGKAGDESHSALTEFDRTEKDITPMGGFPHYGVVKDDFIMVKGCCVGPKKR 338
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
VITLR+ LLK+ + A L EI+L + K R Q
Sbjct: 339 VITLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGGS+A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHIMEIQVNGGSIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|37625023|gb|AAQ96335.1| ribosomal protein L3A [Nicotiana tabacum]
Length = 389
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 188/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP KP LTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPNKPCKLTAFLGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMVIVGV+GYV+TP GLR TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVIVGVVGYVKTPRGLRCLNTVWAQHLSEELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAF K SKK++ GKK I L K+ KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFLKYSKKYESDEGKKDIQTQLEKLKKYACVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A E+ +PV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY-LSMVIKNN--ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y L + + A TD+D TEK ITPMGGFPHYG V +D+L+IKGCC+GPKKRV
Sbjct: 281 -MNKKVYKLGKAGQESHAAVTDFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LL + + A L EI+L + K R Q
Sbjct: 340 VTLRQ-SLLNQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ +PV VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPVDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|169774881|ref|XP_001821908.1| 60S ribosomal protein L3 [Aspergillus oryzae RIB40]
gi|238496503|ref|XP_002379487.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357]
gi|83769771|dbj|BAE59906.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694367|gb|EED50711.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357]
gi|391868765|gb|EIT77974.1| 60S ribosomal protein [Aspergillus oryzae 3.042]
Length = 392
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKE+VEAVT++ETPP+V +GV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEVVEAVTVIETPPLVAIGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K+ ++ G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKQHAEESG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR E+ I
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKTI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DE+ID I VTKG GF+G
Sbjct: 205 EIDSIFEKDEVIDVIAVTKGHGFQG 229
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 98/117 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+ I + +F +DE+ID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFARNLFEKTIEIDSIFEKDEVIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVYRIGKG 289
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/132 (61%), Positives = 96/132 (72%), Gaps = 6/132 (4%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTS---CNHKVYRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLK 556
+ NASTD+D+++K ITPMGGF YGEV NDF+M+KG G KKRV+TLRK +
Sbjct: 287 GKGSDEANASTDFDISKKQITPMGGFVRYGEVKNDFVMVKGSVPGVKKRVMTLRKTLYPQ 346
Query: 557 KRQKKAHLMEIQ 568
+K +E++
Sbjct: 347 TSRKATEKIELK 358
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+ I + +F +DE+ID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKTIEIDSIFEKDEVIDVI 219
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 220 AVTKGHGFQ 228
>gi|395835745|ref|XP_003790833.1| PREDICTED: 60S ribosomal protein L3-like [Otolemur garnettii]
Length = 407
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+D+P++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDNPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK+ K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKSCKRWRDTSGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+Q E+ID I VTKG+G KG
Sbjct: 206 SVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ + V VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVSVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIY++
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYQI 287
Query: 428 GAGIHTKDGKV 438
G GIH +DGK+
Sbjct: 288 GRGIHMEDGKM 298
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y + M ++KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 285 YQIGRGIHMEDGKMVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRV 344
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 345 ITLRKSLLVHHSRQALEKIELKF 367
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ + V VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVSVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|255946257|ref|XP_002563896.1| Pc20g14180 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588631|emb|CAP86747.1| Pc20g14180 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTASMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVT++ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTVIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K + G +I ++L ++ KYC V+RV+AHTQ +Q
Sbjct: 122 WYKSKKKAFTKYAKSHAESSG-ASITRELERIQKYCTVVRVLAHTQIRQ----------- 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
PI +QKKAHLMEIQ+NGGSVADK+ +AR E+ I
Sbjct: 170 --TPI-----------------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKTI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF G
Sbjct: 205 DIDSIFEKDEMIDVIAVTKGHGFSG 229
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/126 (68%), Positives = 100/126 (79%), Gaps = 2/126 (1%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+ I + +F +DEMID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFARNLFEKTIDIDSIFEKDEMIDVIAVTKGHGFSGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW T KLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT N K++R+G G T
Sbjct: 233 RWGTTKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQDGYHHRTSCNHKVFRIGKG--T 290
Query: 434 KDGKVS 439
+G S
Sbjct: 291 DEGNAS 296
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 90/119 (75%), Gaps = 6/119 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW T KLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT C K
Sbjct: 226 GFSGVTSRWGTTKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQDGYHHRTS---CNHK 282
Query: 496 YLSM---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ + NAST++D+++K ITPMGGF HYGEV NDF+M+KG G KKRV+TLRK
Sbjct: 283 VFRIGKGTDEGNASTEFDISKKQITPMGGFVHYGEVKNDFVMVKGSIPGVKKRVMTLRK 341
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+ I + +F +DEMID I
Sbjct: 160 RVLAHTQIRQTPIKQKKAHLMEIQVNGGSVADKVDFARNLFEKTIDIDSIFEKDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|356576067|ref|XP_003556156.1| PREDICTED: 60S ribosomal protein L3-like [Glycine max]
Length = 389
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 190/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+K LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+ETPPMVIVGV+GYV+TP GLR+ TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SK+++ + GKK I L K+ KY V+RV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKQYETEEGKKNIEAQLEKLKKYATVVRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHIMEIQVNGGTIAQKVDFAYSFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 108/162 (66%), Gaps = 9/162 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTEL
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEL 281
Query: 490 FLCKKKYLSMVIKNNAS----TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK + + S T++D TEK ITP+GGFPHYG V +D++M+KGCC+GPKKR
Sbjct: 282 ---NKKVYKLGKAGDESHSALTEFDRTEKDITPIGGFPHYGVVKDDYIMVKGCCVGPKKR 338
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
VITLR+ LLK+ + A L EI+L + K R Q
Sbjct: 339 VITLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|425765902|gb|EKV04543.1| Transcriptional corepressor Cyc8, putative [Penicillium digitatum
PHI26]
gi|425779237|gb|EKV17313.1| Transcriptional corepressor Cyc8, putative [Penicillium digitatum
Pd1]
Length = 1267
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/267 (55%), Positives = 187/267 (70%), Gaps = 37/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
K SHRKF APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT +VR+
Sbjct: 875 KMSHRKFEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTASMGYKAGMTTVVRD 934
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
DRPG+K++KKEIVEAVT++ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFY
Sbjct: 935 LDRPGAKMHKKEIVEAVTVIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFY 994
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWYKS++KAFTK +K + G +I ++L ++ KYC V+RV+AHTQ +Q +
Sbjct: 995 KNWYKSKKKAFTKYAKSHAESSG-ASITRELERIQKYCTVVRVLAHTQIRQTPI------ 1047
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+QKKAHLMEIQ+NGGSV+DK+ +AR E+
Sbjct: 1048 ------------------------------KQKKAHLMEIQVNGGSVSDKVEFARNLFEK 1077
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
I + +F +DEMID I VTKG GF G
Sbjct: 1078 TIDIDSIFEKDEMIDVIAVTKGHGFSG 1104
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 100/127 (78%), Gaps = 2/127 (1%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSV+DK+ +AR E+ I + +F +DEMID I VTKG GF GVTS
Sbjct: 1048 KQKKAHLMEIQVNGGSVSDKVEFARNLFEKTIDIDSIFEKDEMIDVIAVTKGHGFSGVTS 1107
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW T KLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT N KI+R+G G +
Sbjct: 1108 RWGTTKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQDGYHHRTSCNHKIFRIGKG--S 1165
Query: 434 KDGKVSV 440
+G S
Sbjct: 1166 DEGNAST 1172
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 97/136 (71%), Gaps = 6/136 (4%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW T KLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT C K
Sbjct: 1101 GFSGVTSRWGTTKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQDGYHHRTS---CNHK 1157
Query: 496 YLSM---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ + NAST++D+++K ITPMGGF HYGEV NDF+M+KG G KKRV+TLRK
Sbjct: 1158 IFRIGKGSDEGNASTEFDISKKQITPMGGFVHYGEVKNDFVMVKGSVPGVKKRVMTLRKT 1217
Query: 553 KLLKKRQKKAHLMEIQ 568
+ ++ +E++
Sbjct: 1218 LYPQTSRRATEKVELK 1233
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSV+DK+ +AR E+ I + +F +DEMID I
Sbjct: 1035 RVLAHTQIRQTPIKQKKAHLMEIQVNGGSVSDKVEFARNLFEKTIDIDSIFEKDEMIDVI 1094
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 1095 AVTKGHGF 1102
>gi|6683575|dbj|BAA89259.1| ribosomal protein L3 [Bombyx mori]
Length = 171
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/166 (82%), Positives = 155/166 (93%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKEIVEAVTI+ETPPMV VGV+GY+ETPHGLR+ TVWAEH+S++CRRRFYKN
Sbjct: 62 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ 204
WYK ++KAFTKASKKWQD+LG+K+I +D +KM +YC V+RVIAHTQ
Sbjct: 122 WYKCKKKAFTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 167
>gi|189204215|ref|XP_001938443.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187985542|gb|EDU51030.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 392
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 184/265 (69%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEA T++ETPPM+ VG++GY+ETP GLRS TVWAEHLS E +RRFY+N
Sbjct: 62 RPGAKLHKKEIVEACTVIETPPMIAVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G ++I ++L +M KYC VIRV+AHTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKHSESNG-QSITRELERMKKYCTVIRVLAHTQISKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSIADKVEHGHGLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +EMID I VTKG G+ G
Sbjct: 205 EISSIFEANEMIDVIAVTKGHGYNG 229
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 94/115 (81%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ E+PI + +F +EMID I VTKG G+ GVTS
Sbjct: 173 KQKKAHLMEIQINGGSIADKVEHGHGLFEKPIEISSIFEANEMIDVIAVTKGHGYNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N KIYR+G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQMGYHHRTSVNHKIYRIG 287
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 90/116 (77%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GYNGVTSRWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQMGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV NDF+++KG C G KKRV+TLRK
Sbjct: 286 IGKADDEGNASTEFDVSKKRITPMGGFVRYGEVKNDFVLLKGNCPGVKKRVMTLRK 341
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLMEIQ+NGGS+ADK+ E+PI + +F +EMID I
Sbjct: 160 RVLAHTQISKTPLKQKKAHLMEIQINGGSIADKVEHGHGLFEKPIEISSIFEANEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG G+
Sbjct: 220 AVTKGHGY 227
>gi|116204627|ref|XP_001228124.1| 60S ribosomal protein L3 [Chaetomium globosum CBS 148.51]
gi|88176325|gb|EAQ83793.1| 60S ribosomal protein L3 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 186/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEVVEAVTIIDTPPMMVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENSGA-SITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F +DEMID I VTKG GF G
Sbjct: 205 SVDSIFEKDEMIDVIAVTKGHGFSG 229
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+P+ V +F +DEMID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSVDSIFEKDEMIDVIAVTKGHGFSGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 89/116 (76%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFSGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++A+T+ D+T+K ITPMGGF YGEVNNDF+M+KG G KKRV+TLRK
Sbjct: 286 IGKGDADDSAATEIDVTKKKITPMGGFVRYGEVNNDFVMVKGSVPGVKKRVMTLRK 341
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ V +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSVDSIFEKDEMIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|402076640|gb|EJT72063.1| 60S ribosomal protein L3 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 392
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAV+I++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKSHKKEVVEAVSIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G +I +++ ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSESKG-ASITREIERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q+E+ID I VTKG GF G
Sbjct: 205 SIDTIFEQNEVIDVIAVTKGHGFNG 229
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F Q+E+ID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDTIFEQNEVIDVIAVTKGHGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIG 287
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 96/129 (74%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKA 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+++A+T+ D+T+K ITPMGGF YGEVNNDF+M+KG G KKRV+TLRK + +
Sbjct: 290 DAEDSAATELDVTKKKITPMGGFVRYGEVNNDFVMVKGSIPGTKKRVMTLRKSMFIHTSR 349
Query: 560 KKAHLMEIQ 568
K +E++
Sbjct: 350 KALEKVELK 358
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F Q+E+ID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDTIFEQNEVIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|345565030|gb|EGX47986.1| hypothetical protein AOL_s00081g313 [Arthrobotrys oligospora ATCC
24927]
Length = 390
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRG+ K FPKD+ KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGRCKAFPKDNAKKPVHLTAALGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVT++ETPPM+ VGV+GY+ETP GLRS TVWA HLS E RRRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTVIETPPMIAVGVVGYIETPRGLRSLTTVWAAHLSDEIRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G I +DL ++ KYC V+R+IAHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSETNG-SAIERDLERIKKYCTVVRLIAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAH+MEIQ+NGGS+A+K+ +A+ E+PI
Sbjct: 173 ----------------------------KQKKAHMMEIQINGGSIAEKVDFAKNLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DE+ID IGVTKG GF G
Sbjct: 205 EIPSIFEKDEVIDIIGVTKGHGFNG 229
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGGS+A+K+ +A+ E+PI + +F +DE+ID IGVTKG GF GVTS
Sbjct: 173 KQKKAHMMEIQINGGSIAEKVDFAKNLFEKPIEIPSIFEKDEVIDIIGVTKGHGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQYGYHHRTSVNHKIYRVGLG 289
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 98/139 (70%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +
Sbjct: 220 GVTKGHGFNGVTSRWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQYGYHHRTSV 279
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ NNAST+YD++ K+ITPMGGF YG V NDF+MIKG C G KKRV+TL
Sbjct: 280 NHKIYRVGLGSDPNNASTEYDVSNKTITPMGGFVRYGPVKNDFIMIKGSCPGVKKRVLTL 339
Query: 550 RKMKLLKKRQKKAHLMEIQ 568
RK + +K ++I+
Sbjct: 340 RKSLITHTSRKALEKVDIK 358
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C R+I +++ +QKKAH+MEIQ+NGGS+A+K+ +A+ E+
Sbjct: 145 IERDLERIKKYCT--VVRLIAHTQIRKTPLKQKKAHMMEIQINGGSIAEKVDFAKNLFEK 202
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGF 612
PI + +F +DE+ID IGVTKG GF
Sbjct: 203 PIEIPSIFEKDEVIDIIGVTKGHGF 227
>gi|389638328|ref|XP_003716797.1| 60S ribosomal protein L3 [Magnaporthe oryzae 70-15]
gi|351642616|gb|EHA50478.1| 60S ribosomal protein L3 [Magnaporthe oryzae 70-15]
gi|440474629|gb|ELQ43359.1| 60S ribosomal protein L3 [Magnaporthe oryzae Y34]
gi|440480504|gb|ELQ61164.1| 60S ribosomal protein L3 [Magnaporthe oryzae P131]
Length = 392
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 186/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAV+I++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEVVEAVSIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + ++ ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSESKA-SSVTRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q+EMID I VTKG GF G
Sbjct: 205 SIDTIFEQNEMIDIIAVTKGHGFNG 229
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F Q+EMID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVEFGHGLFEKPVSIDTIFEQNEMIDIIAVTKGHGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 96/129 (74%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
++NA+T+ D+T+K ITPMGGF YGE+NNDF+M+KG G KKRV+TLRK + +
Sbjct: 290 DAEDNAATEIDVTKKKITPMGGFVRYGEINNDFVMVKGSIPGTKKRVMTLRKSMFIHTSR 349
Query: 560 KKAHLMEIQ 568
K +E++
Sbjct: 350 KALEKVELK 358
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F Q+EMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVEFGHGLFEKPVSIDTIFEQNEMIDII 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|326497903|dbj|BAJ94814.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 389
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FPKDD KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVEAVFQKDEMIDIIGVTKGKGYEG 231
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 107/156 (68%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y S + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L +I+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEDIKLKFIDTSSKFGHGR 373
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMI
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMI 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|164424622|ref|XP_963317.2| 60S ribosomal protein L3 [Neurospora crassa OR74A]
gi|30580497|sp|P59671.1|RL3_NEUCR RecName: Full=60S ribosomal protein L3
gi|28881190|emb|CAD70371.1| probable 60s ribosomal protein l3 (rpl3) [Neurospora crassa]
gi|157070591|gb|EAA34081.2| 60S ribosomal protein L3 [Neurospora crassa OR74A]
gi|336468587|gb|EGO56750.1| hypothetical protein NEUTE1DRAFT_95379 [Neurospora tetrasperma FGSC
2508]
gi|350289142|gb|EGZ70367.1| putative 60s ribosomal protein l3 [Neurospora tetrasperma FGSC
2509]
Length = 392
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 184/265 (69%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KK D G I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYVKKHSDNNG-AAITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DE+ID I VTKG GF G
Sbjct: 205 SIDSIFEKDEVIDVIAVTKGHGFTG 229
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F +DE+ID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKG 289
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 97/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+++A+T+ D+T+K ITPMGGF YGE+NNDF+M+KG G KKRV+TLRK +
Sbjct: 286 IGKGDAEDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFV 345
Query: 556 KKRQKKAHLMEIQ 568
+K +E++
Sbjct: 346 HTSRKALEKVELK 358
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F +DE+ID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|313227808|emb|CBY22957.1| unnamed protein product [Oikopleura dioica]
Length = 403
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 143/266 (53%), Positives = 188/266 (70%), Gaps = 37/266 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+ F PKKR R RG++K FPKDD +KP+HLTAF+G+KAGMTH+VREA+
Sbjct: 2 SHRKFSAPRHGSLKFLPKKRCTRPRGQIKSFPKDDASKPIHLTAFMGFKAGMTHVVREAE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGS INKKE+VEAVTI+ETPP+ ++G+ GY+ETP G RS KTVWA H+S E +RRFY++
Sbjct: 62 KPGSAINKKEVVEAVTIVETPPLKVIGLTGYIETPDGPRSIKTVWANHISDEAKRRFYRS 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY S++KAFTKASK+W+ + GKK+I +D+ + KY K +R I HT
Sbjct: 122 WYSSKKKAFTKASKRWESEDGKKSIERDIAMIKKYSKNVRAICHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQP 277
QMK L RQKKAH++EIQ+NGG+ +ADK+ WA + E+
Sbjct: 167 ---------------------QMKGLSLRQKKAHIIEIQINGGNGIADKVDWATSNFEKE 205
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF++ EMID IG+TKG+G+ G
Sbjct: 206 VSVNTVFSEAEMIDVIGITKGRGYHG 231
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/131 (71%), Positives = 113/131 (86%), Gaps = 1/131 (0%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 366
MK L RQKKAH++EIQ+NGG+ +ADK+ WA + E+ + V VF++ EMID IG+TKG+
Sbjct: 168 MKGLSLRQKKAHIIEIQINGGNGIADKVDWATSNFEKEVSVNTVFSEAEMIDVIGITKGR 227
Query: 367 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
G+ GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV F+VAR+GQKGYHHRTE+NKK+YR
Sbjct: 228 GYHGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFSVARSGQKGYHHRTEINKKVYR 287
Query: 427 MGAGIHTKDGK 437
+GAG HT DGK
Sbjct: 288 VGAGFHTVDGK 298
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 105/149 (70%), Gaps = 13/149 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV F+VAR+GQKGYHHRTE
Sbjct: 222 GITKGRGYHGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFSVARSGQKGYHHRTE- 280
Query: 490 FLCKKKYLSMV---------IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y +KNNAST+ D+T+KSI P+GGF YG V +DF+MIKG
Sbjct: 281 -INKKVYRVGAGFHTVDGKEVKNNASTEADITDKSINPVGGFVQYGLVKSDFVMIKGGIC 339
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
GPKKR ITLR+ L K+ +A L ++L
Sbjct: 340 GPKKRAITLRQS--LLKQTSRAALEPVKL 366
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLE 586
+ D MIK R I +MK L RQKKAH++EIQ+NGG+ +ADK+ WA + E
Sbjct: 146 IERDIAMIKKYSKNV--RAICHTQMKGLSLRQKKAHIIEIQINGGNGIADKVDWATSNFE 203
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGF 612
+ + V VF++ EMID IG+TKG+G+
Sbjct: 204 KEVSVNTVFSEAEMIDVIGITKGRGY 229
>gi|145475213|ref|XP_001423629.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145532966|ref|XP_001452233.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390690|emb|CAK56231.1| unnamed protein product [Paramecium tetraurelia]
gi|124419921|emb|CAK84836.1| unnamed protein product [Paramecium tetraurelia]
Length = 393
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 217/391 (55%), Gaps = 106/391 (27%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG++GF P+KR+ HRG+++ FPKD+ + PVHLTAF G+KAGMTHI+R +
Sbjct: 2 SHRKFEAPRHGNLGFTPRKRTKHHRGRIRAFPKDNKSSPVHLTAFAGFKAGMTHILRTVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+N KE+VEAVTI+ETPP+ +VG++GY+ETP GLR+ TVW+ ++++ RRFYKN
Sbjct: 62 RPGSKLNGKEVVEAVTIVETPPLAVVGIVGYIETPRGLRALTTVWSTKIAKDTLRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S++KAFT +K + K + L+++ KYC+V+RVI HT
Sbjct: 122 WINSKKKAFTNYNKANAE---PKNLETQLKRIVKYCQVVRVIVHT--------------- 163
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM L RQKK H+ E+Q+NGG+ K+ +A+ LE+ +
Sbjct: 164 ---------------------QMSKLNLRQKKNHVFEVQVNGGTTEQKVNYAKGLLEKEV 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
V QVF Q+E ID +GVTKGKG G +I +K QKK H W R
Sbjct: 203 KVDQVFKQNEQIDVLGVTKGKGVAG-VIKRFGVKHLQKKTHR--------------GWRR 247
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+ CIG WH
Sbjct: 248 ------------------VGCIG----------------------------------GWH 255
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
P+ V+++VAR GQ GYHHRTE+NKKIYR+GA
Sbjct: 256 PANVRYSVARTGQLGYHHRTEMNKKIYRIGA 286
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K L +KTH+G R+V CIG WHP+ V+++VAR GQ GYHHRTE+
Sbjct: 218 GVTKGKGVAGVIKRFGVKHLQKKTHRGWRRVGCIGGWHPANVRYSVARTGQLGYHHRTEM 277
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + KN AST+ DLT K+ITP+GGFPHYGE+ NDFLM+KG +GPKKRV+ L
Sbjct: 278 NKKIYRIGAAGDKNTASTEADLTSKAITPLGGFPHYGEIRNDFLMLKGGIVGPKKRVVLL 337
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK L+ + +KA L EI L + KI R
Sbjct: 338 RK-SLVPQTSRKA-LEEITLKFVDTSSKIGHGR 368
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M L RQKK H+ E+Q+NGG+ K+ +A+ LE+ + V QVF Q+E ID +
Sbjct: 158 RVIVHTQMSKLNLRQKKNHVFEVQVNGGTTEQKVNYAKGLLEKEVKVDQVFKQNEQIDVL 217
Query: 605 GVTKGKG 611
GVTKGKG
Sbjct: 218 GVTKGKG 224
>gi|336263974|ref|XP_003346766.1| 60S ribosomal protein L3 [Sordaria macrospora k-hell]
gi|380091473|emb|CCC10969.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 392
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 184/265 (69%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDMD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KK D G I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYVKKHSDNNG-AAITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSIADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DE+ID I VTKG GF G
Sbjct: 205 SIDSIFEKDEVIDVIAVTKGHGFTG 229
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ + E+P+ + +F +DE+ID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSIADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIG 287
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 97/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+++A+T+ D+T+K ITPMGGF YGE+NNDF+M+KG G KKRV+TLRK +
Sbjct: 286 IGKAGAEDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFI 345
Query: 556 KKRQKKAHLMEIQ 568
+K +E++
Sbjct: 346 HTSRKALEKVELK 358
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ADK+ + E+P+ + +F +DE+ID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSIADKVEFGHGLFEKPVSIDSIFEKDEVIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|33526886|gb|AAQ21397.1| ribosomal protein L3 [Triticum aestivum]
gi|33526907|gb|AAQ21398.1| ribosomal protein L3 [Triticum aestivum]
gi|34105766|gb|AAQ62074.1| ribosomal protein L3 [Triticum aestivum]
gi|118152391|gb|ABK63939.1| ribosomal protein L3-A2-I [Triticum aestivum]
gi|118152394|gb|ABK63941.1| ribosomal protein L3-A2 [Triticum aestivum]
gi|146141398|tpg|DAA01147.1| TPA_inf: ribosomal protein L3A-2 [Triticum aestivum]
Length = 389
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FPKDD KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDSGKKEIQLQLEKMKKYATIVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEM+D IGVTKGKG++G
Sbjct: 207 PVEAVFQKDEMVDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 99/115 (86%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+D IGVTKGKG++GV +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVT 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKKIY+MG
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMG 289
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 106/157 (67%), Gaps = 9/157 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK M + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKR
Sbjct: 282 ---NKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKR 338
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
V+TLR+ LLK+ + A L EI+L + K R
Sbjct: 339 VVTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMV 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|315113296|pdb|3IZR|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
gi|33526877|gb|AAQ21396.1| ribosomal protein L3 [Triticum aestivum]
gi|33526922|gb|AAQ21399.1| ribosomal protein L3 [Triticum aestivum]
gi|34105776|gb|AAQ62079.1| ribosomal protein L3 [Triticum aestivum]
gi|118152406|gb|ABK63947.1| ribosomal protein L3-A1 [Triticum aestivum]
gi|146141402|tpg|DAA01149.1| TPA_inf: ribosomal protein L3A-1 [Triticum aestivum]
Length = 389
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FPKDD KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEM+D IGVTKGKG++G
Sbjct: 207 PVEAVFQKDEMVDIIGVTKGKGYEG 231
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+D IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKKIY+M
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKM 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 106/157 (67%), Gaps = 9/157 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK M + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKR
Sbjct: 282 ---NKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKR 338
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
V+TLR+ LLK+ + A L EI+L + K R
Sbjct: 339 VVTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMV 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|357157422|ref|XP_003577793.1| PREDICTED: 60S ribosomal protein L3-like [Brachypodium distachyon]
Length = 389
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 186/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FP+DDP K HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKAFPRDDPQKKCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPIVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY V+RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYASVVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYNFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 105/130 (80%), Gaps = 3/130 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G-AGIHTKDG 436
G AG T D
Sbjct: 289 GKAGQETHDA 298
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L +I+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEDIKLKFIDTSSKFGHGR 373
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|367035414|ref|XP_003666989.1| hypothetical protein MYCTH_2312253 [Myceliophthora thermophila ATCC
42464]
gi|347014262|gb|AEO61744.1| hypothetical protein MYCTH_2312253 [Myceliophthora thermophila ATCC
42464]
Length = 391
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 186/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVTI++TPPMV+VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEVVEAVTIIDTPPMVVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK + G I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHSENNG-AAITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGG+VA+K+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGTVAEKVDFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DE+ID I VTKG GF G
Sbjct: 205 SIDTIFEKDEIIDVIAVTKGHGFTG 229
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG+VA+K+ + E+P+ + +F +DE+ID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGTVAEKVDFGHGLFEKPVSIDTIFEKDEIIDVIAVTKGHGFTGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 96/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+NA+TD D+T+K ITPMGGF YGEVNND++M+KG G KKRV+TLRK +
Sbjct: 286 IGKGDADDNAATDVDVTKKKITPMGGFVRYGEVNNDYVMVKGSVPGVKKRVMTLRKSLFV 345
Query: 556 KKRQKKAHLMEIQ 568
+K +E++
Sbjct: 346 HTSRKALEKVELK 358
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGG+VA+K+ + E+P+ + +F +DE+ID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGTVAEKVDFGHGLFEKPVSIDTIFEKDEIIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>gi|332825391|ref|XP_001143080.2| PREDICTED: 60S ribosomal protein L3-like [Pan troglodytes]
Length = 718
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/245 (61%), Positives = 178/245 (72%), Gaps = 39/245 (15%)
Query: 62 HRG-KVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILET 118
HRG KC D +KPVHLTAF+GYKAGMTHIVRE DRPGSK+NKKE+VEAVTI+ET
Sbjct: 337 HRGWNGKCLALRDGVSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVET 396
Query: 119 PPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKL 178
PPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKNW+KS++KAFTK KKWQD+
Sbjct: 397 PPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDED 456
Query: 179 GKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESH 238
KK + +D M KYC+VIRVIAHTQ
Sbjct: 457 DKKQLEKDFSSMKKYCQVIRVIAHTQ---------------------------------- 482
Query: 239 VQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 298
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKG
Sbjct: 483 --MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKG 540
Query: 299 KGFKG 303
KG+KG
Sbjct: 541 KGYKG 545
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 483 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 542
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTK LPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 543 YKGVTSRWHTKNLPRKTHQGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 602
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 603 GQGYLIKDGKL 613
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTK LPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 536 GVTKGKGYKGVTSRWHTKNLPRKTHQGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 595
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 596 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 655
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 656 KKRVLTLRKSLLVQTKRRALEKIDLKF 682
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 460 QLEKDFSSMKKYCQ--VIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 517
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 518 QQVPVNQVFGQDEMIDVIGVTKGKGYK 544
>gi|440798172|gb|ELR19240.1| ribosomal protein L3, putative [Acanthamoeba castellanii str. Neff]
Length = 398
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR+ARHRGK K FPKDD +K HLTAF+ YKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGSLGFTPRKRAARHRGKCKTFPKDDASKKPHLTAFLAYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGS+++K+E+VEAVTILE PPMV+VG++GY++TP G+R+ TVWA+HLS EC RRFYKN
Sbjct: 62 KPGSRMHKREVVEAVTILEAPPMVVVGIVGYIDTPSGMRTLTTVWAQHLSAECLRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK K + +++ ++ KYC V+RVIAHT
Sbjct: 122 WYRSKKKAFTKYQKALAANKA-RVFDREVARLKKYCTVVRVIAHT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++ L +RQKKAH+MEIQ+NGGS+ADK+ +A LE+P+
Sbjct: 166 ---------------------QVRKLNQRQKKAHIMEIQVNGGSIADKVDFAVSLLEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF E++D IGVTKGKG++G
Sbjct: 205 PVDNVFGDSELVDTIGVTKGKGYEG 229
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 107/128 (83%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
L +RQKKAH+MEIQ+NGGS+ADK+ +A LE+P+PV VF E++D IGVTKGKG++G
Sbjct: 170 LNQRQKKAHIMEIQVNGGSIADKVDFAVSLLEKPVPVDNVFGDSELVDTIGVTKGKGYEG 229
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
VT+RW +LPRKTH+GLRKVACIGAWHP+ VQ++V RAGQ GYHHRTELNKKIYR+G G
Sbjct: 230 VTTRWGVTRLPRKTHRGLRKVACIGAWHPAAVQWSVPRAGQNGYHHRTELNKKIYRIGKG 289
Query: 431 IHTKDGKV 438
+ + GK+
Sbjct: 290 VRQEGGKI 297
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 99/134 (73%), Gaps = 11/134 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW +LPRKTH+GLRKVACIGAWHP+ VQ++V RAGQ GYHHRTEL
Sbjct: 220 GVTKGKGYEGVTTRWGVTRLPRKTHRGLRKVACIGAWHPAAVQWSVPRAGQNGYHHRTEL 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
KK Y ++ NNAST++DLTEKSITPMGGFPHYGEVN D+LMIKG +
Sbjct: 280 --NKKIYRIGKGVRQEGGKIVHNNASTEFDLTEKSITPMGGFPHYGEVNEDYLMIKGAVI 337
Query: 541 GPKKRVITLRKMKL 554
GPKKRVIT+RK L
Sbjct: 338 GPKKRVITIRKALL 351
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 54/69 (78%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +++ L +RQKKAH+MEIQ+NGGS+ADK+ +A LE+P+PV VF E++D I
Sbjct: 160 RVIAHTQVRKLNQRQKKAHIMEIQVNGGSIADKVDFAVSLLEKPVPVDNVFGDSELVDTI 219
Query: 605 GVTKGKGFK 613
GVTKGKG++
Sbjct: 220 GVTKGKGYE 228
>gi|359486157|ref|XP_002263053.2| PREDICTED: 60S ribosomal protein L3 [Vitis vinifera]
gi|297739519|emb|CBI29701.3| unnamed protein product [Vitis vinifera]
Length = 389
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/265 (59%), Positives = 191/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDPT P LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTNPCRLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GY++TP GLRS TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYLKTPRGLRSLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SKK++ + GKK I L KM KYC VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKKYESEDGKKDIQAQLEKMKKYCNVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG VA K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGDVAKKVDYAYGFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +F +DEMID IGVTKGKG++G
Sbjct: 207 PIDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 100/121 (82%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG VA K+ +A E+ IP+ +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGDVAKKVDYAYGFFEKQIPIDAIFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKV 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 109/163 (66%), Gaps = 11/163 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSMVIKN-----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K + V K +A T++D TEK ITPMGGFPHYG V +D+L+IKGCC+GPKK
Sbjct: 282 ----NKKIYKVGKTGQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKK 337
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
RV+TLR+ LLK+ + A + EI+L + K R Q
Sbjct: 338 RVVTLRQ-SLLKQTSRVA-MEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG VA K+ +A E+ IP+ +F +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGDVAKKVDYAYGFFEKQIPIDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|118152392|gb|ABK63940.1| ribosomal protein L3-A2-II [Triticum aestivum]
Length = 401
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FPKDD KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDSGKKEIQLQLEKMKKYATIVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEM+D IGVTKGKG++G
Sbjct: 207 PVEAVFQKDEMVDIIGVTKGKGYEG 231
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 99/115 (86%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+D IGVTKGKG++GV +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVT 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKKIY+MG
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMG 289
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/132 (61%), Positives = 96/132 (72%), Gaps = 8/132 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK M + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKR
Sbjct: 282 ---NKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKR 338
Query: 546 VITLRKMKLLKK 557
V+TLR+ LLK+
Sbjct: 339 VVTLRQ-SLLKQ 349
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+D IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|242077200|ref|XP_002448536.1| hypothetical protein SORBIDRAFT_06g028650 [Sorghum bicolor]
gi|241939719|gb|EES12864.1| hypothetical protein SORBIDRAFT_06g028650 [Sorghum bicolor]
Length = 389
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 185/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FP+DDP KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDPKKPCHLTAFVGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY VIRVIAHTQ ++ + ++
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYASVIRVIAHTQIKKMKGLKQKK--- 178
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
AHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 179 --------------------------------AHLMEIQVNGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 153/265 (57%), Gaps = 70/265 (26%)
Query: 318 AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHT 377
AHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG++GV +RW
Sbjct: 179 AHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 238
Query: 378 KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGK 437
+LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 239 TRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG--------- 289
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
+AGQ+ + TE
Sbjct: 290 ---------------------------------------KAGQESHDASTEF-------- 302
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKK 557
T+ D+T PMGGFPHYG V D+LMIKGCC+GPKKRV+TLR+ LLK+
Sbjct: 303 -------DRTEKDIT-----PMGGFPHYGIVKGDYLMIKGCCVGPKKRVVTLRQ-SLLKQ 349
Query: 558 RQKKAHLMEIQLNGGSVADKIAWAR 582
+ A L EI+L + K R
Sbjct: 350 TSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 43/55 (78%)
Query: 562 AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
AHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG++ V
Sbjct: 179 AHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKGYEGVV 233
>gi|388583632|gb|EIM23933.1| 60S ribosomal protein L3 [Wallemia sebi CBS 633.66]
Length = 391
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/267 (54%), Positives = 186/267 (69%), Gaps = 39/267 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSAR--HRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
SHRK+ APRHGS+GF P+KR RGK K FPKDD KPVHLT IGYKAGMTH+VR+
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRCTNVGARGKCKSFPKDDAKKPVHLTGLIGYKAGMTHVVRD 61
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
DRPGSK++K+E+VE VTI+ETPPM +VGV+GYVETP GLRS TVWAEHLS E +RRFY
Sbjct: 62 LDRPGSKMHKREVVEPVTIVETPPMAVVGVVGYVETPRGLRSLTTVWAEHLSDELKRRFY 121
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWY+S++KAFTK +KK + G +I +++ ++ KYC+V+RV+AHTQ + SL
Sbjct: 122 KNWYRSKKKAFTKYAKKHSENSG-ASITREIERIKKYCQVVRVLAHTQVSKTSL------ 174
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+QKKAHLMEIQ+NGGSV+DK+ +A+ H E+
Sbjct: 175 ------------------------------KQKKAHLMEIQVNGGSVSDKVDFAKSHFEK 204
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDE+ID IG+TKG+G++G
Sbjct: 205 TVSASSVFEQDEVIDAIGITKGRGYEG 231
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSV+DK+ +A+ H E+ + VF QDE+ID IG+TKG+G++GVT
Sbjct: 175 KQKKAHLMEIQVNGGSVSDKVDFAKSHFEKTVSASSVFEQDEVIDAIGITKGRGYEGVTK 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW+ +LPRKTHKGLRKVACIGAWHPS V F+VAR+GQ G+HHRTELNKK+YR+G+
Sbjct: 235 RWNVTRLPRKTHKGLRKVACIGAWHPSNVMFSVARSGQDGFHHRTELNKKVYRIGSA 291
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/150 (58%), Positives = 104/150 (69%), Gaps = 2/150 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G VT RW+ +LPRKTHKGLRKVACIGAWHPS V F+VAR+GQ G+HHRTEL
Sbjct: 222 GITKGRGYEGVTKRWNVTRLPRKTHKGLRKVACIGAWHPSNVMFSVARSGQDGFHHRTEL 281
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ S KNNAST++D TEK ITPMGGFPHYG + NDF+M+KGC +GPKKR ITL
Sbjct: 282 NKKVYRIGSAEDKNNASTEFDPTEKQITPMGGFPHYGVIQNDFIMLKGCIVGPKKRAITL 341
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIA 579
RK + +AHL ++ L + KI
Sbjct: 342 RKSHQV--HTSRAHLEKVNLKFIDTSSKIG 369
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ +QKKAHLMEIQ+NGGSV+DK+ +A+ H E+ + VF QDE+ID I
Sbjct: 162 RVLAHTQVSKTSLKQKKAHLMEIQVNGGSVSDKVDFAKSHFEKTVSASSVFEQDEVIDAI 221
Query: 605 GVTKGKGFK 613
G+TKG+G++
Sbjct: 222 GITKGRGYE 230
>gi|213403598|ref|XP_002172571.1| 60S ribosomal protein L3 [Schizosaccharomyces japonicus yFS275]
gi|213406091|ref|XP_002173817.1| 60S ribosomal protein L3 [Schizosaccharomyces japonicus yFS275]
gi|212000618|gb|EEB06278.1| 60S ribosomal protein L3-A [Schizosaccharomyces japonicus yFS275]
gi|212001864|gb|EEB07524.1| 60S ribosomal protein L3-A [Schizosaccharomyces japonicus yFS275]
Length = 388
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 194/265 (73%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHGS+GF P+KR+AR RGKVK FPKDD +KPVHLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHCKFEQPRHGSLGFLPRKRAARARGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EI+EAVT+LETPPMV+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKREILEAVTVLETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ + ++I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKYAETT--QSITRELERIKKYCSVVRVLAHTQIRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSVADK+ WAR+H E+ +
Sbjct: 172 ----------------------------TQKKAHLMEIQINGGSVADKVEWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+E++D IG+TKGKG +G
Sbjct: 204 DVKSVFEQNEIVDVIGITKGKGVEG 228
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 103/122 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSVADK+ WAR+H E+ + V VF Q+E++D IG+TKGKG +GVT+R
Sbjct: 173 QKKAHLMEIQINGGSVADKVEWAREHFEKTVDVKSVFEQNEIVDVIGITKGKGVEGVTTR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TK+LPRKTH+GLRKVACIGAWHPS V +TVARAG GY HRT+LN KIYR+G+G K
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGAWHPSNVGWTVARAGNNGYMHRTQLNSKIYRIGSGDDAK 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 85/122 (69%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G VT+RW TK+LPRKTH+GLRKVACIGAWHPS V +TVARAG GY HRT+L
Sbjct: 219 GITKGKGVEGVTTRWGTKRLPRKTHRGLRKVACIGAWHPSNVGWTVARAGNNGYMHRTQL 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ S N +TD+D TEK ITPMGGF YG V ND++M+ G GP KRV+TL
Sbjct: 279 NSKIYRIGSGDDAKNGATDFDATEKRITPMGGFVRYGSVENDYVMLNGATPGPVKRVLTL 338
Query: 550 RK 551
RK
Sbjct: 339 RK 340
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 51/67 (76%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGSVADK+ WAR+H E+ + V VF Q+E++D I
Sbjct: 159 RVLAHTQIRKTPLTQKKAHLMEIQINGGSVADKVEWAREHFEKTVDVKSVFEQNEIVDVI 218
Query: 605 GVTKGKG 611
G+TKGKG
Sbjct: 219 GITKGKG 225
>gi|242810586|ref|XP_002485611.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500]
gi|218716236|gb|EED15658.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500]
Length = 398
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/269 (54%), Positives = 187/269 (69%), Gaps = 37/269 (13%)
Query: 35 VKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIV 94
V SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IV
Sbjct: 4 VPPVSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTIV 63
Query: 95 READRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRR 154
R+ DRPG+K++KKE+VEAVT++ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RR
Sbjct: 64 RDLDRPGAKMHKKEVVEAVTVIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDELKRR 123
Query: 155 FYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
FYKNWYKS++KAFT+ +KK + ++ ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 124 FYKNWYKSKKKAFTRYAKKHTES-SAASVTRELERIKKYCTVVRVLAHTQIRKTPL---- 178
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 274
+QKKAHLMEIQ+NGGSVADK+ +A
Sbjct: 179 --------------------------------KQKKAHLMEIQVNGGSVADKVDFAHGLF 206
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+ I + +F Q+E+ID I VTKG GF G
Sbjct: 207 EKTIDIDTIFEQNEVIDVIAVTKGHGFNG 235
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +A E+ I + +F Q+E+ID I VTKG GF GVTS
Sbjct: 179 KQKKAHLMEIQVNGGSVADKVDFAHGLFEKTIDIDTIFEQNEVIDVIAVTKGHGFNGVTS 238
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 239 RWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 295
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT + +
Sbjct: 236 VTSRWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 295
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST+YD+++K+ITP+GGF YGEV NDF+++KG G KKRV+TLRK
Sbjct: 296 SDEGNASTEYDVSKKTITPLGGFVRYGEVKNDFVIVKGSVPGVKKRVMTLRK 347
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
V + IK C RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +A
Sbjct: 149 ASVTRELERIKKYCT--VVRVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFAHGLF 206
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGF 612
E+ I + +F Q+E+ID I VTKG GF
Sbjct: 207 EKTIDIDTIFEQNEVIDVIAVTKGHGF 233
>gi|301093682|ref|XP_002997686.1| 60S ribosomal protein L3 [Phytophthora infestans T30-4]
gi|262109935|gb|EEY67987.1| 60S ribosomal protein L3 [Phytophthora infestans T30-4]
Length = 389
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/264 (55%), Positives = 189/264 (71%), Gaps = 38/264 (14%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRKF APRHG +GF PKKR+ HRG+V+ FP+DD +K HLTAF+G+KAGMTHIVRE DR
Sbjct: 3 HRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGFKAGMTHIVREVDR 62
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
PGSK++KKEIVE V+I+ETPPMV++GV+GY+ETP GLR+ TV+AEHLS+E +RRFYKNW
Sbjct: 63 PGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNW 122
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
YKS++KAFTK +KK+Q I +L ++ KYC+V+RV+AHT
Sbjct: 123 YKSKRKAFTKYAKKYQT--APADIENELNRIKKYCQVVRVLAHT---------------- 164
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
Q++ +K RQKKAHL+E+Q+NGGSVADK+ +A+ E+ +P
Sbjct: 165 --------------------QVRKVKLRQKKAHLLEVQVNGGSVADKVDFAKSLFEKQVP 204
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
V VFA+DEMID IGVTKG G +G
Sbjct: 205 VTAVFAKDEMIDVIGVTKGHGVEG 228
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 102/120 (85%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
+K RQKKAHL+E+Q+NGGSVADK+ +A+ E+ +PV VFA+DEMID IGVTKG G +G
Sbjct: 169 VKLRQKKAHLLEVQVNGGSVADKVDFAKSLFEKQVPVTAVFAKDEMIDVIGVTKGHGVEG 228
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
V +RW +LPRKTH+GLRKVACIGAWHPSRV+FTV RAGQ GYHHRTE+NKKIYR+GA
Sbjct: 229 VITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEINKKIYRVGAA 288
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHPSRV+FTV RAGQ GYHHRTE+
Sbjct: 219 GVTKGHGVEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEI 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + K + T+ DLTEK ITP+GGFPHYG +N D+LMIKG +G KKR +TL
Sbjct: 279 NKKIYRVGAAGDKKSCMTEQDLTEKDITPLGGFPHYGVINEDWLMIKGAIVGTKKRALTL 338
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK L+ K++ L EI L + K R
Sbjct: 339 RKSLLV--HTKRSALEEINLKFIDTSSKFGHGR 369
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
++ N+ IK C RV+ +++ +K RQKKAHL+E+Q+NGGSVADK+ +A+
Sbjct: 142 ADIENELNRIKKYCQ--VVRVLAHTQVRKVKLRQKKAHLLEVQVNGGSVADKVDFAKSLF 199
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
E+ +PV VFA+DEMID IGVTKG G + +
Sbjct: 200 EKQVPVTAVFAKDEMIDVIGVTKGHGVEGVI 230
>gi|34105768|gb|AAQ62075.1| ribosomal protein L3 [Triticum aestivum]
gi|34105770|gb|AAQ62076.1| ribosomal protein L3 [Triticum aestivum]
gi|34105774|gb|AAQ62078.1| ribosomal protein L3 [Triticum aestivum]
gi|118152389|gb|ABK63938.1| ribosomal protein L3-B3 [Triticum aestivum]
gi|118152400|gb|ABK63944.1| ribosomal protein L3-B1 [Triticum aestivum]
gi|146141392|tpg|DAA01144.1| TPA_inf: ribosomal protein L3B-3 [Triticum aestivum]
gi|146141396|tpg|DAA01146.1| TPA_inf: ribosomal protein L3B-1 [Triticum aestivum]
Length = 389
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 186/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FP+DD +K HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKAFPRDDQSKKCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPIVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY V+RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYNFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 104/130 (80%), Gaps = 3/130 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G-AGIHTKDG 436
G G T D
Sbjct: 289 GKVGQETHDA 298
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEEIKLKFVDTSSKFGHGR 373
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|212536953|ref|XP_002148632.1| 60S ribosomal protein L3 [Talaromyces marneffei ATCC 18224]
gi|210068374|gb|EEA22465.1| 60S ribosomal protein L3 [Talaromyces marneffei ATCC 18224]
Length = 392
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 186/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKE+VEAVT++ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEVVEAVTVIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFT+ +KK + ++ ++L ++ KYC V+R++AHTQ ++ L
Sbjct: 122 WYKSKKKAFTRYTKKHTES-SAASVTRELERIKKYCTVVRILAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ +A E+ I
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVEFAHGLFEKTI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q+E+ID I VTKG GF G
Sbjct: 205 DIDTIFEQNEVIDVIAVTKGHGFNG 229
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ +A E+ I + +F Q+E+ID I VTKG GF GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVEFAHGLFEKTIDIDTIFEQNEVIDVIAVTKGHGFNGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K+ITP+GGF YGEV NDF+++KG G KKRV+TLRK
Sbjct: 290 SDEGNASTEFDVSKKTITPLGGFVRYGEVKNDFVIVKGSVPGVKKRVMTLRK 341
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
V + IK C R++ +++ +QKKAHLMEIQ+NGGS+ADK+ +A
Sbjct: 143 ASVTRELERIKKYCT--VVRILAHTQIRKTPLKQKKAHLMEIQVNGGSIADKVEFAHGLF 200
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGF 612
E+ I + +F Q+E+ID I VTKG GF
Sbjct: 201 EKTIDIDTIFEQNEVIDVIAVTKGHGF 227
>gi|168060915|ref|XP_001782438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666109|gb|EDQ52773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++R RGKVK FPKDDP K HLT+F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRSRGKVKTFPKDDPVKKPHLTSFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+++VG++ Y++TP GLRS TVWA+HLS E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPIIVVGLVAYIKTPRGLRSLNTVWAQHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAF+K SK+++ + GK+ + +L +M KY VIRV+AHTQ +
Sbjct: 122 WYKSKKKAFSKYSKRYESEEGKRDLQSELERMKKYASVIRVLAHTQVR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KL +QKKAHL EIQ+NGG++A+K+ + E+P+
Sbjct: 170 -----------------------KLKGIKQKKAHLAEIQVNGGTIAEKVDFGYNLFEKPV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVT+G G++G
Sbjct: 207 PVDAVFNKDEMIDIIGVTRGHGYEG 231
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/120 (65%), Positives = 99/120 (82%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHL EIQ+NGG++A+K+ + E+P+PV VF +DEMID IGVT+G G+
Sbjct: 170 KLKGIKQKKAHLAEIQVNGGTIAEKVDFGYNLFEKPVPVDAVFNKDEMIDIIGVTRGHGY 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKVG 289
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 113/175 (64%), Gaps = 14/175 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTRGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSMVIKN------NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPK 543
K + V K+ +AST++D+TEK ITPMGGF HYG V D+LMIKG MGPK
Sbjct: 282 ----NKKVYKVGKSADKESFSASTEFDVTEKEITPMGGFAHYGIVREDYLMIKGGVMGPK 337
Query: 544 KRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR--QHLEQPIPVGQVFA 596
KRVITLR+ L K+ ++ L +I+L + K R LE+ G+V A
Sbjct: 338 KRVITLRQS--LYKQVSRSALEDIKLKFIDTSSKFGHGRFQTSLEKAKVYGKVKA 390
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K +K QKKAHL EIQ+NGG++A+K+ + E+P+PV VF +DEMID IGVT+
Sbjct: 168 VRKLKGIK--QKKAHLAEIQVNGGTIAEKVDFGYNLFEKPVPVDAVFNKDEMIDIIGVTR 225
Query: 609 GKGFKECV 616
G G++ V
Sbjct: 226 GHGYEGVV 233
>gi|327304004|ref|XP_003236694.1| 60S ribosomal protein L3 [Trichophyton rubrum CBS 118892]
gi|326462036|gb|EGD87489.1| 60S ribosomal protein L3 [Trichophyton rubrum CBS 118892]
Length = 459
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 147/272 (54%), Positives = 188/272 (69%), Gaps = 40/272 (14%)
Query: 32 RHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMT 91
R RVK SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT
Sbjct: 65 RQRVK-MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMT 123
Query: 92 HIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQEC 151
IVR+ +RPG+K+++KEIVEAVTI+ETPPM+ VG++GY+ETP GLRS TVWA+HLS E
Sbjct: 124 TIVRDLERPGAKMHRKEIVEAVTIVETPPMIAVGIVGYIETPRGLRSLTTVWADHLSDEV 183
Query: 152 RRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLH 211
+RRFYKNWYKS++KAFT+ +K D T ++L ++ YC V+R++AHTQ ++ L
Sbjct: 184 KRRFYKNWYKSKKKAFTRYAKTHAD---ASTTTRELERIKNYCTVVRLLAHTQIRKTPL- 239
Query: 212 QNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 271
+QKKAHLMEIQ+NGGS+ADK+ +A
Sbjct: 240 -----------------------------------KQKKAHLMEIQVNGGSIADKVEFAH 264
Query: 272 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+PI V VF +DE++D I VTKG GF G
Sbjct: 265 GLFEKPIDVDSVFEKDEVVDVIAVTKGHGFSG 296
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF +DE++D I VTKG GF GVTS
Sbjct: 240 KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTKGHGFSGVTS 299
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G
Sbjct: 300 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYRIG 354
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 88/116 (75%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 293 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYR 352
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++M+KG G +KRV+TLRK
Sbjct: 353 IGKADDEGNASTDFDVSKKRITPMGGFVRYGEVKNDYVMLKGSIPGVRKRVVTLRK 408
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF +DE++D I VTK
Sbjct: 234 IRKTPL---KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTK 290
Query: 609 GKGF 612
G GF
Sbjct: 291 GHGF 294
>gi|260946767|ref|XP_002617681.1| 60S ribosomal protein L3 [Clavispora lusitaniae ATCC 42720]
gi|238849535|gb|EEQ38999.1| 60S ribosomal protein L3 [Clavispora lusitaniae ATCC 42720]
Length = 388
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 183/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PRHGS+GF P+KRSA HRG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEQPRHGSLGFLPRKRSASHRGQVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPPMVIVGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPMVIVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + I ++L ++ KY V+RV+ HTQ
Sbjct: 122 WYKSKKKAFTKYSAKYAQ--NGEEINRELARITKYASVVRVLVHTQ-------------V 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K P+ QKKAHL EIQ+NGGS+ DK+ WA++H E+ +
Sbjct: 167 KKTPLS-----------------------QKKAHLAEIQINGGSIEDKVNWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF +DEMID + VTKG GF+G
Sbjct: 204 SVDSVFEKDEMIDVVAVTKGHGFEG 228
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 99/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS+ DK+ WA++H E+ + V VF +DEMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQINGGSIEDKVNWAKEHFEKTVSVDSVFEKDEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G+G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGSGADEA 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 85/112 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + + S
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGSG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ N +T++D T+K+I P+GGF YG VNNDF+++KG G KKRV+TLRK
Sbjct: 289 ADEANGATEFDRTKKTINPLGGFVRYGLVNNDFVLLKGSIPGIKKRVVTLRK 340
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGS+ DK+ WA++H E+ + V VF +DEMID +
Sbjct: 159 RVLVHTQVKKTPLSQKKAHLAEIQINGGSIEDKVNWAKEHFEKTVSVDSVFEKDEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|118152396|gb|ABK63942.1| ribosomal protein L3-A3 [Triticum aestivum]
gi|118152398|gb|ABK63943.1| ribosomal protein L3-A3 [Triticum aestivum]
gi|146141400|tpg|DAA01148.1| TPA_inf: ribosomal protein L3A-3 [Triticum aestivum]
Length = 389
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FPKDD KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKAFPKDDQQKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPCGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDCDAGKKEIQLQLEKMKKYATIVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEM+D IGVTKGKG++G
Sbjct: 207 PVEAVFQKDEMVDIIGVTKGKGYEG 231
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 99/115 (86%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+D IGVTKGKG++GV +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVT 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKKIY+MG
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMG 289
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 106/157 (67%), Gaps = 9/157 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
KK M + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKR
Sbjct: 282 ---NKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKR 338
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
V+TLR+ LLK+ + A L EI+L + K R
Sbjct: 339 VVTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMV 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>gi|146417684|ref|XP_001484810.1| 60S ribosomal protein L3 [Meyerozyma guilliermondii ATCC 6260]
gi|146390283|gb|EDK38441.1| 60S ribosomal protein L3 [Meyerozyma guilliermondii ATCC 6260]
Length = 389
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 186/265 (70%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEA T+++TPP+VIVGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKREIVEAATVVDTPPLVIVGVVGYVETPRGLRSLTTVWAEHLSEEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK S K+ + I ++L ++ KY V+RV+AHTQ
Sbjct: 122 WFKSKKKAFTKYSAKYAQDGAQ--IEKELARITKYASVVRVLAHTQ-------------V 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K P+ QKKAHL EIQ+NGGS+ADK+ WA++H E+ +
Sbjct: 167 KKTPLS-----------------------QKKAHLAEIQVNGGSIADKVQWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID I VT+G GF+G
Sbjct: 204 TVDSVFEQNEMIDVIAVTRGHGFEG 228
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS+ADK+ WA++H E+ + V VF Q+EMID I VT+G GF+GVT R
Sbjct: 173 QKKAHLAEIQVNGGSIADKVQWAKEHFEKTVTVDSVFEQNEMIDVIAVTRGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G+G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGSGADES 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 86/112 (76%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + + S
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGSG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++N +T++D T+KSI PMGGF YG VNNDF+M+KG G KKRV+TLRK
Sbjct: 289 ADESNGATEFDRTKKSINPMGGFVRYGNVNNDFVMVKGSIPGTKKRVVTLRK 340
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGS+ADK+ WA++H E+ + V VF Q+EMID I
Sbjct: 159 RVLAHTQVKKTPLSQKKAHLAEIQVNGGSIADKVQWAKEHFEKTVTVDSVFEQNEMIDVI 218
Query: 605 GVTKGKGFKECVH 617
VT+G GF+ H
Sbjct: 219 AVTRGHGFEGVTH 231
>gi|147865994|emb|CAN83050.1| hypothetical protein VITISV_042376 [Vitis vinifera]
Length = 389
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/265 (59%), Positives = 191/265 (72%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF +KR+ARHRGKVK FPKDDPTKP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLXRKRAARHRGKVKAFPKDDPTKPCRLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GY++TP GLRS TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYLKTPRGLRSLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SKK++ + GKK I L KM KYC VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKKYESEDGKKDIQAQLEKMKKYCNVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG VA K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGDVAKKVDYAYGFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +F +DEMID IGVTKGKG++G
Sbjct: 207 PIDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 100/121 (82%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG VA K+ +A E+ IP+ +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGDVAKKVDYAYGFFEKQIPIDAIFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKV 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 109/163 (66%), Gaps = 11/163 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSMVIKN-----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K + V K +A T++D TEK ITPMGGFPHYG V +D+L+IKGCC+GPKK
Sbjct: 282 ----NKKIYKVGKTGQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKK 337
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
RV+TLR+ LLK+ + A + EI+L + K R Q
Sbjct: 338 RVVTLRQ-SLLKQTSRVA-MEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG VA K+ +A E+ IP+ +F +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGDVAKKVDYAYGFFEKQIPIDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|149240189|ref|XP_001525970.1| 60S ribosomal protein L3 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450093|gb|EDK44349.1| 60S ribosomal protein L3 [Lodderomyces elongisporus NRRL YB-4239]
Length = 389
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 185/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPP+VIVGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPLVIVGVVGYVETPRGLRSLTTVWAEHLSEEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ K I +L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYASDA--KQIETELARIKKYASVVRVLAHTQIKKTPLS------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGS++DK+ WA++H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQINGGSISDKVDWAKEHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID I VTKG GF+G
Sbjct: 204 SVDSVFEQNEMIDVIAVTKGHGFEG 228
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 99/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQINGGSISDKVDWAKEHFEKEVSVDSVFEQNEMIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGGDES 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 85/112 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++N +T++D T+K+I PMGGF YG VNNDF+++KG G KKR++TLRK
Sbjct: 289 GDESNGATEFDRTKKTINPMGGFVRYGNVNNDFVLLKGSIPGVKKRIVTLRK 340
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I
Sbjct: 159 RVLAHTQIKKTPLSQKKAHLAEIQINGGSISDKVDWAKEHFEKEVSVDSVFEQNEMIDVI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|441617792|ref|XP_004092915.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L3 [Nomascus
leucogenys]
Length = 375
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 144/238 (60%), Positives = 173/238 (72%), Gaps = 36/238 (15%)
Query: 66 VKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVG 125
+K FPKDDP+KPVHLTAF+GYKAGMTHIVRE DRPGSK+NKKE+VEAVTI+E PPMV+VG
Sbjct: 1 MKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVEAPPMVVVG 60
Query: 126 VIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQ 185
++GYVETP GLR+FKTV+AEH+S EC+RRFYKNW+KS++KAFTK KKWQD+ GKK + +
Sbjct: 61 IVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEK 120
Query: 186 DLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLK 245
D M KYC+VIRVIAHT QM+LL
Sbjct: 121 DFSSMKKYCQVIRVIAHT------------------------------------QMRLLP 144
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
RQ+ AHLMEIQ+NGG+VA+K+ WAR+ LEQ VF QDEMID IG +GKG+KG
Sbjct: 145 LRQRXAHLMEIQVNGGTVAEKLDWARERLEQQYLXEPVFGQDEMIDVIGXDQGKGYKG 202
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 111/131 (84%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQ+ AHLMEIQ+NGG+VA+K+ WAR+ LEQ VF QDEMID IG +GKG
Sbjct: 140 MRLLPLRQRXAHLMEIQVNGGTVAEKLDWARERLEQQYLXEPVFGQDEMIDVIGXDQGKG 199
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 200 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 259
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 260 GQGYLIKDGKL 270
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 111/141 (78%), Gaps = 7/141 (4%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE----LFL 491
G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE ++
Sbjct: 199 GYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYK 258
Query: 492 CKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
+ YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G KKRV+T
Sbjct: 259 IGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLT 318
Query: 549 LRKMKLLKKRQKKAHLMEIQL 569
LRK L++ +++ ++++
Sbjct: 319 LRKSLLVQTKRRALEKIDLKF 339
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQ+ AHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 117 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQRXAHLMEIQVNGGTVAEKLDWARERLE 174
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q VF QDEMID IG +GKG+K
Sbjct: 175 QQYLXEPVFGQDEMIDVIGXDQGKGYK 201
>gi|348687785|gb|EGZ27599.1| hypothetical protein PHYSODRAFT_284116 [Phytophthora sojae]
Length = 389
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 145/264 (54%), Positives = 188/264 (71%), Gaps = 38/264 (14%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRKF APRHG +GF PKKR+ HRG+V+ FP+DD +K HLTAF+GYKAGMTHI+RE DR
Sbjct: 3 HRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIMREVDR 62
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
PGSK++KKEIVE V+I+ETPPMV++GV+GY+ETP GLR+ TV+AEHLS+E +RRFYKNW
Sbjct: 63 PGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNW 122
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
YKS++KAFTK +KK+Q I +L ++ KYC+V+RV+AHT
Sbjct: 123 YKSKRKAFTKYAKKYQT--APADIENELNRIKKYCQVVRVLAHT---------------- 164
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
Q++ +K RQKKAHL+E+Q+NGGSV DK+ +A+ E+ +P
Sbjct: 165 --------------------QVRKVKLRQKKAHLLEVQVNGGSVGDKVDFAKSLFEKQVP 204
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
V VFA+DEMID IGVTKG G +G
Sbjct: 205 VTAVFAKDEMIDVIGVTKGHGIEG 228
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 101/120 (84%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
+K RQKKAHL+E+Q+NGGSV DK+ +A+ E+ +PV VFA+DEMID IGVTKG G +G
Sbjct: 169 VKLRQKKAHLLEVQVNGGSVGDKVDFAKSLFEKQVPVTAVFAKDEMIDVIGVTKGHGIEG 228
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
V +RW +LPRKTH+GLRKVACIGAWHPSRV+FTV RAGQ GYHHRTE+NKKIYR+GA
Sbjct: 229 VITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEINKKIYRIGAA 288
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHPSRV+FTV RAGQ GYHHRTE+
Sbjct: 219 GVTKGHGIEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEI 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + K + T+ DLTEK ITP+GGFPHYG +N D+LMIKG +G KKR +TL
Sbjct: 279 NKKIYRIGAAGDKKSCMTEQDLTEKDITPLGGFPHYGIINEDWLMIKGAIVGTKKRALTL 338
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK L+ K++ L EI L + K R
Sbjct: 339 RKSLLV--HTKRSALEEINLKFIDTSSKFGHGR 369
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
++ N+ IK C RV+ +++ +K RQKKAHL+E+Q+NGGSV DK+ +A+
Sbjct: 142 ADIENELNRIKKYCQ--VVRVLAHTQVRKVKLRQKKAHLLEVQVNGGSVGDKVDFAKSLF 199
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
E+ +PV VFA+DEMID IGVTKG G + +
Sbjct: 200 EKQVPVTAVFAKDEMIDVIGVTKGHGIEGVI 230
>gi|71019525|ref|XP_759993.1| hypothetical protein UM03846.1 [Ustilago maydis 521]
gi|46099519|gb|EAK84752.1| hypothetical protein UM03846.1 [Ustilago maydis 521]
Length = 474
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 149/278 (53%), Positives = 188/278 (67%), Gaps = 54/278 (19%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKC-----------------FPKDDPTKPVHLTAFIG 85
F PRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA IG
Sbjct: 72 FEHPRHGSLGFLPRKRAARHRGKVKASLTLSSIYRASMYQSHSFPKDDPKKPVHLTAMIG 131
Query: 86 YKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAE 145
YKAGMTHIVR+ DRPGSK++KKEIVEAVT++ETPPMV VGV+GYVETP GLRS TVWAE
Sbjct: 132 YKAGMTHIVRDLDRPGSKMHKKEIVEAVTVIETPPMVAVGVVGYVETPRGLRSLTTVWAE 191
Query: 146 HLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQN 205
HLS E +RRFYKNWY+S++KAFT+ +KK + G +I+++L ++ KYC V+RV+AHTQ
Sbjct: 192 HLSDEVKRRFYKNWYRSKKKAFTRYAKKHSENNG-ASISRELERIKKYCTVVRVLAHTQV 250
Query: 206 QQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVAD 265
++ L +QKKAHLME+Q+NGGSVA+
Sbjct: 251 RKTGL------------------------------------KQKKAHLMEVQINGGSVAE 274
Query: 266 KIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
K+ +A++H E+ V VF Q+E+ID I VTKG G++G
Sbjct: 275 KVDFAKEHFEKTFDVKSVFEQNEIIDVIAVTKGHGYEG 312
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVA+K+ +A++H E+ V VF Q+E+ID I VTKG G++GVT+
Sbjct: 256 KQKKAHLMEVQINGGSVAEKVDFAKEHFEKTFDVKSVFEQNEIIDVIAVTKGHGYEGVTA 315
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTH+GLRK+ACIGAWHP+ V FTVAR+GQ GYHHRTE+ KKIYR+ G
Sbjct: 316 RWGTKKLPRKTHRGLRKIACIGAWHPANVMFTVARSGQDGYHHRTEIGKKIYRISNG 372
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 91/116 (78%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTH+GLRK+ACIGAWHP+ V FTVAR+GQ GYHHRTE+ +
Sbjct: 309 GYEGVTARWGTKKLPRKTHRGLRKIACIGAWHPANVMFTVARSGQDGYHHRTEIGKKIYR 368
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K + STD+D TEK+ITP+GGFPHYG V NDF+MIKG C G KKRV+TLRK
Sbjct: 369 ISNGEDKTSGSTDFDTTEKAITPLGGFPHYGLVKNDFVMIKGSCPGVKKRVLTLRK 424
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLME+Q+NGGSVA+K+ +A++H E+ V VF Q+E+ID I
Sbjct: 243 RVLAHTQVRKTGLKQKKAHLMEVQINGGSVAEKVDFAKEHFEKTFDVKSVFEQNEIIDVI 302
Query: 605 GVTKGKGFK 613
VTKG G++
Sbjct: 303 AVTKGHGYE 311
>gi|449549702|gb|EMD40667.1| hypothetical protein CERSUDRAFT_80320 [Ceriporiopsis subvermispora
B]
Length = 388
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 192/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDPKKPVHLTAVMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPMV+VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVIETPPMVVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K+IA++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAED-GGKSIARELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGS+ADK+ +A E+P
Sbjct: 173 ----------------------------SQKKAHLMEIQVNGGSIADKVEFAHGLFEKPA 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG VF QDE+ID I VTKG GF+G
Sbjct: 205 EVGSVFEQDEVIDVIAVTKGHGFEG 229
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/116 (76%), Positives = 100/116 (86%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGS+ADK+ +A E+P VG VF QDE+ID I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSIADKVEFAHGLFEKPAEVGSVFEQDEVIDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRVGSG 289
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 100/130 (76%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRVGSG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NAST++D+T+K+ITPMGGFPHYG V NDFLM+KG G KKRVITLRK ++ +
Sbjct: 290 SDEANASTEHDITKKAITPMGGFPHYGIVKNDFLMLKGSVPGTKKRVITLRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L ++QL
Sbjct: 350 RD--LEKVQL 357
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGS+ADK+ +A E+P VG VF QDE+ID I
Sbjct: 160 RVLAHTQIRKTGLSQKKAHLMEIQVNGGSIADKVEFAHGLFEKPAEVGSVFEQDEVIDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|118152402|gb|ABK63945.1| ribosomal protein L3-B2 [Triticum aestivum]
gi|118152404|gb|ABK63946.1| ribosomal protein L3-B2 [Triticum aestivum]
gi|146141394|tpg|DAA01145.1| TPA_inf: ribosomal protein L3B-2 [Triticum aestivum]
Length = 389
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 186/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FP+DD +K HLTAF+GYK+GMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKAFPRDDQSKKCHLTAFLGYKSGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPIVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY V+RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIHMQLEKMKKYATVVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYSFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 104/130 (80%), Gaps = 3/130 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQINGGTIADKVDYGYSFFEKEVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G-AGIHTKDG 436
G G T D
Sbjct: 289 GKVGQETHDA 298
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEEIKLKFVDTSSKFGHGR 373
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYSFFEKEVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|302788822|ref|XP_002976180.1| hypothetical protein SELMODRAFT_267945 [Selaginella moellendorffii]
gi|300156456|gb|EFJ23085.1| hypothetical protein SELMODRAFT_267945 [Selaginella moellendorffii]
Length = 389
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 185/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FP+DDPTK HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAQRHRGKVKSFPRDDPTKKPHLTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP++IVGV+ Y++TP GLRS TVWA+HLS + +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLIIVGVVAYIKTPRGLRSLNTVWAQHLSDDLKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+YKS++KAFTK +KK+ GKK I +L +M KY VIRV+AHT+ +
Sbjct: 122 FYKSKKKAFTKYAKKYDTDEGKKGIEHELERMKKYGSVIRVLAHTKVRN----------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
L +QKKAHLMEIQ+NGG+ A+K+ +A E+ +
Sbjct: 171 ------------------------LKGIKQKKAHLMEIQVNGGTTAEKVDFAYNFFEKAV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKG G++G
Sbjct: 207 PIDSVFRKDEMIDVIGVTKGHGYEG 231
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 97/115 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG+ A+K+ +A E+ +P+ VF +DEMID IGVTKG G++GV +
Sbjct: 175 KQKKAHLMEIQVNGGTTAEKVDFAYNFFEKAVPIDSVFRKDEMIDVIGVTKGHGYEGVVT 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++G
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIG 289
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 112/174 (64%), Gaps = 13/174 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTKGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSMVIK-----NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K + + K + AST++D T+K ITPMGGF HYG VN D++MIKGCCMG +K
Sbjct: 282 ----NKKIYKIGKQGQESHKASTEFDTTDKDITPMGGFAHYGVVNEDYIMIKGCCMGVRK 337
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR--QHLEQPIPVGQVFA 596
RVITLR+ L K+ + L +I+L + K R LE+ G+V A
Sbjct: 338 RVITLRQS--LWKQTSRNALEDIKLKFVDTSSKFGHGRFQTSLEKAKVFGKVKA 389
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RV+ K++ LK +QKKAHLMEIQ+NGG+ A+K+ +A E+ +P+ VF +DEMID
Sbjct: 161 RVLAHTKVRNLKGIKQKKAHLMEIQVNGGTTAEKVDFAYNFFEKAVPIDSVFRKDEMIDV 220
Query: 604 IGVTKGKGFKECV 616
IGVTKG G++ V
Sbjct: 221 IGVTKGHGYEGVV 233
>gi|302769558|ref|XP_002968198.1| hypothetical protein SELMODRAFT_270706 [Selaginella moellendorffii]
gi|300163842|gb|EFJ30452.1| hypothetical protein SELMODRAFT_270706 [Selaginella moellendorffii]
Length = 389
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 185/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FP+DDPTK HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAQRHRGKVKSFPRDDPTKKPHLTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP++IVGV+ Y++TP GLRS TVWA+HLS + +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLIIVGVVAYIKTPRGLRSLNTVWAQHLSDDLKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+YKS++KAFTK +KK+ GKK I +L +M KY VIRV+AHT+ +
Sbjct: 122 FYKSKKKAFTKYAKKYDTDEGKKGIEHELERMKKYGSVIRVLAHTKVRN----------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
L +QKKAHLMEIQ+NGG+ A+K+ +A E+ +
Sbjct: 171 ------------------------LKGIKQKKAHLMEIQVNGGTTAEKVDFAYNFFEKAV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKG G++G
Sbjct: 207 PIDSVFRKDEMIDVIGVTKGHGYEG 231
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 97/115 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG+ A+K+ +A E+ +P+ VF +DEMID IGVTKG G++GV +
Sbjct: 175 KQKKAHLMEIQVNGGTTAEKVDFAYNFFEKAVPIDSVFRKDEMIDVIGVTKGHGYEGVVT 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++G
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIG 289
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 112/174 (64%), Gaps = 13/174 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTKGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSMVIK-----NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K + + K + AST++D T+K ITPMGGF HYG VN D++MIKGCCMG +K
Sbjct: 282 ----NKKIYKIGKQGQDSHKASTEFDTTDKDITPMGGFAHYGVVNEDYIMIKGCCMGVRK 337
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR--QHLEQPIPVGQVFA 596
RVITLR+ L K+ + L +I+L + K R LE+ G+V A
Sbjct: 338 RVITLRQS--LWKQTSRNALEDIKLKFVDTSSKFGHGRFQTSLEKAKVFGKVKA 389
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RV+ K++ LK +QKKAHLMEIQ+NGG+ A+K+ +A E+ +P+ VF +DEMID
Sbjct: 161 RVLAHTKVRNLKGIKQKKAHLMEIQVNGGTTAEKVDFAYNFFEKAVPIDSVFRKDEMIDV 220
Query: 604 IGVTKGKGFKECV 616
IGVTKG G++ V
Sbjct: 221 IGVTKGHGYEGVV 233
>gi|401409462|ref|XP_003884179.1| 60S ribosomal protein L3, related [Neospora caninum Liverpool]
gi|325118597|emb|CBZ54148.1| 60S ribosomal protein L3, related [Neospora caninum Liverpool]
Length = 398
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 181/265 (68%), Gaps = 39/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR RHRGKVK FPKDDP+KP HLTAF+GYKAGMTH+VRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRHRGKVKAFPKDDPSKPPHLTAFMGYKAGMTHVVRELD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEAVT+++TPPMV VGV+GY+ETP GLR+ TVWA HLS EC+RRFYKN
Sbjct: 62 KPGSKLHKKEIVEAVTVVDTPPMVCVGVVGYIETPRGLRALVTVWAGHLSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K++ D + +L +M YC VIR I HTQ +
Sbjct: 122 WYKSKRKAFTKYAKRYGD---NNKMEAELTRMKNYCSVIRAICHTQPSK----------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
PI S KKAH+MEIQ+NGGSVA+K+ + + E +
Sbjct: 168 --TPIGS-----------------------KKAHVMEIQVNGGSVAEKVDFCTKMFETAV 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF + EM+D IGVTKG G KG
Sbjct: 203 PVKAVFTEGEMLDVIGVTKGHGVKG 227
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 94/122 (77%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
KKAH+MEIQ+NGGSVA+K+ + + E +PV VF + EM+D IGVTKG G KGV SR
Sbjct: 172 SKKAHVMEIQVNGGSVAEKVDFCTKMFETAVPVKAVFTEGEMLDVIGVTKGHGVKGVVSR 231
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W +LPRKTH+GLRK+ACIGAWHP+RVQF V R GQKGY HRTE+NKK+YR+G G +
Sbjct: 232 WGVTRLPRKTHRGLRKIACIGAWHPARVQFQVPRHGQKGYFHRTEMNKKVYRVGNGADPR 291
Query: 435 DG 436
+
Sbjct: 292 NA 293
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 95/140 (67%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V SRW +LPRKTH+GLRK+ACIGAWHP+RVQF V R GQKGY HRTE+
Sbjct: 218 GVTKGHGVKGVVSRWGVTRLPRKTHRGLRKIACIGAWHPARVQFQVPRHGQKGYFHRTEM 277
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + NA+T+ DLTEK ITPMGGFPHYG VNNDFL+IKGC +G KKR IT
Sbjct: 278 NKKVYRVGNGADPRNATTESDLTEKRITPMGGFPHYGTVNNDFLLIKGCIVGCKKRPITF 337
Query: 550 RKMKLLKKRQKKAHLMEIQL 569
RK + + +K + ++
Sbjct: 338 RKTLVTRTSRKALEPVNLKF 357
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+MEIQ+NGGSVA+K+ + + E +PV VF + EM+D IGVTKG G K V
Sbjct: 172 SKKAHVMEIQVNGGSVAEKVDFCTKMFETAVPVKAVFTEGEMLDVIGVTKGHGVKGVV 229
>gi|237834163|ref|XP_002366379.1| 60S ribosomal protein L3, putative [Toxoplasma gondii ME49]
gi|211964043|gb|EEA99238.1| 60S ribosomal protein L3, putative [Toxoplasma gondii ME49]
gi|221486606|gb|EEE24867.1| 60S ribosomal protein L3, putative [Toxoplasma gondii GT1]
gi|221508362|gb|EEE33949.1| 60S ribosomal protein L3, putative [Toxoplasma gondii VEG]
Length = 389
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 181/265 (68%), Gaps = 39/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR RHRGKVK FPKDDP+KP HLTAF+GYKAGMTH+VRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRHRGKVKAFPKDDPSKPPHLTAFMGYKAGMTHVVRELD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEAVT+++TPPMV VGV+GY+ETP GLR+ TVWA HLS EC+RRFYKN
Sbjct: 62 KPGSKLHKKEIVEAVTVVDTPPMVCVGVVGYIETPRGLRALVTVWAGHLSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K++ D + +L +M YC VIR I HTQ +
Sbjct: 122 WYKSKRKAFTKYAKRYGD---NNKMEAELTRMKNYCSVIRAICHTQPSK----------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
PI S KKAH+MEIQ+NGGS+A+K+ + + E +
Sbjct: 168 --TPIGS-----------------------KKAHVMEIQVNGGSIAEKVDFCTKMFETAV 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF + EMID IGVTKG G KG
Sbjct: 203 PVKAVFTEGEMIDVIGVTKGHGVKG 227
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 94/122 (77%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
KKAH+MEIQ+NGGS+A+K+ + + E +PV VF + EMID IGVTKG G KGV SR
Sbjct: 172 SKKAHVMEIQVNGGSIAEKVDFCTKMFETAVPVKAVFTEGEMIDVIGVTKGHGVKGVVSR 231
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W +LPRKTH+GLRK+ACIGAWHP+RVQF V R GQKGY HRTE+NKK+YR+G G +
Sbjct: 232 WGVTRLPRKTHRGLRKIACIGAWHPARVQFQVPRHGQKGYFHRTEMNKKVYRVGNGADPR 291
Query: 435 DG 436
+
Sbjct: 292 NA 293
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V SRW +LPRKTH+GLRK+ACIGAWHP+RVQF V R GQKGY HRTE+
Sbjct: 218 GVTKGHGVKGVVSRWGVTRLPRKTHRGLRKIACIGAWHPARVQFQVPRHGQKGYFHRTEM 277
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + NA+T+ DLTEK ITPMGGFPHYG VNNDFL++KGC +G KKR IT
Sbjct: 278 NKKVYRVGNGADPRNATTESDLTEKRITPMGGFPHYGTVNNDFLLLKGCIVGCKKRPITF 337
Query: 550 RKMKLLKKRQKKAHLMEIQL 569
RK L R + L + L
Sbjct: 338 RKT--LVPRTTRRALEPVNL 355
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+MEIQ+NGGS+A+K+ + + E +PV VF + EMID IGVTKG G K V
Sbjct: 172 SKKAHVMEIQVNGGSIAEKVDFCTKMFETAVPVKAVFTEGEMIDVIGVTKGHGVKGVV 229
>gi|310794485|gb|EFQ29946.1| ribosomal protein L3 [Glomerella graminicola M1.001]
Length = 391
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 183/265 (69%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K NKKE+VEAV+I++TPPM++VG++GY+ETP GLRS TVWAEHLS E RRRFYKN
Sbjct: 62 RPGAKANKKEVVEAVSIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEIRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K+ + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKQHSEASG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSV +K+ + E+P+
Sbjct: 173 ----------------------------TQKKAHLMEIQVNGGSVPEKVDFGYGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q+EMID I VT G G+ G
Sbjct: 205 TIDSIFEQNEMIDVIAVTTGHGYNG 229
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 94/116 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSV +K+ + E+P+ + +F Q+EMID I VT G G+ GVTSR
Sbjct: 174 QKKAHLMEIQVNGGSVPEKVDFGYGLFEKPVTIDSIFEQNEMIDVIAVTTGHGYNGVTSR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 91/122 (74%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
+ T G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 220 AVTTGHGYNGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSV 279
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ +NASTD D+T+K+ITP+GGF YGEV NDF+M+KG G KKRV+TL
Sbjct: 280 NHKVYRIGKGDADDNASTDVDVTKKTITPLGGFVRYGEVKNDFVMVKGSIPGTKKRVMTL 339
Query: 550 RK 551
RK
Sbjct: 340 RK 341
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGSV +K+ + E+P+ + +F Q+EMID I
Sbjct: 160 RVLAHTQIRKTPLTQKKAHLMEIQVNGGSVPEKVDFGYGLFEKPVTIDSIFEQNEMIDVI 219
Query: 605 GVTKGKGF 612
VT G G+
Sbjct: 220 AVTTGHGY 227
>gi|410902231|ref|XP_003964598.1| PREDICTED: 60S ribosomal protein L3-like [Takifugu rubripes]
Length = 408
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/267 (58%), Positives = 192/267 (71%), Gaps = 36/267 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG GF P KRS +HRG+V+ +PKDD +PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFHAPRHGHTGFLPHKRSKKHRGRVRSWPKDDARRPVHLTAFLGYKAGMTHTLREVQ 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R G K K+E VEAVTI+ETPP+++VGV+GY++T HGLRSFK+V+AEHLS EC+RRFY+N
Sbjct: 62 RVGLKQAKREEVEAVTIIETPPVIVVGVVGYIQTVHGLRSFKSVFAEHLSDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK SKKWQD+ GKK + ++ +M KYC VIRVI HT
Sbjct: 122 WYKSKKKAFTKYSKKWQDEKGKKQLEKEFEQMKKYCSVIRVIIHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL QKKAH+ME+QLNGGS++DK+ WA++HLEQ +
Sbjct: 167 ---------------------QMRLLPIGQKKAHIMEVQLNGGSISDKVDWAKEHLEQAV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEM 305
PV VF QDE ID IGVTKG+GFKG M
Sbjct: 206 PVSSVFYQDETIDIIGVTKGRGFKGVM 232
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL QKKAH+ME+QLNGGS++DK+ WA++HLEQ +PV VF QDE ID IGVTKG+G
Sbjct: 168 MRLLPIGQKKAHIMEVQLNGGSISDKVDWAKEHLEQAVPVSSVFYQDETIDIIGVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGV SRWHTKKLPRKTHKGLRKVACIGAWHP+RV +T+ARAGQKGY+HRTE+NKKIYR+
Sbjct: 228 FKGVMSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYTIARAGQKGYYHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H DGKV
Sbjct: 288 GRGVHVHDGKV 298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 111/149 (74%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V SRWHTKKLPRKTHKGLRKVACIGAWHP+RV +T+ARAGQKGY+HRTE
Sbjct: 221 GVTKGRGFKGVMSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYTIARAGQKGYYHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VI+NNAST YD ++K+ITPMGGFPHYGEVNNDF+M+KGC +
Sbjct: 280 -INKKIYRIGRGVHVHDGKVIRNNASTHYDTSQKTITPMGGFPHYGEVNNDFVMVKGCVV 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
GPKKRV+TLRK L+ +K +E++
Sbjct: 339 GPKKRVLTLRKSLLVHTSRKARETIELKF 367
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ +F +K C RVI +M+LL QKKAH+ME+QLNGGS++DK+ WA++HLE
Sbjct: 145 QLEKEFEQMKKYC--SVIRVIIHTQMRLLPIGQKKAHIMEVQLNGGSISDKVDWAKEHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDE ID IGVTKG+GFK
Sbjct: 203 QAVPVSSVFYQDETIDIIGVTKGRGFK 229
>gi|303273052|ref|XP_003055887.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461971|gb|EEH59263.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 387
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 184/265 (69%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR G +GF PKKRS R RGK K FP+DDPT P HLTAF+G+KAGMTHIVR+ D
Sbjct: 2 SHRKFEHPRLGHLGFLPKKRSQRARGKCKKFPRDDPTSPPHLTAFLGFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE +EAVTI+ETP M++VGV+GYV+TP GLR+ TVWAEHLS E +RRFYKN
Sbjct: 62 KPGSKLHKKETLEAVTIVETPAMIVVGVVGYVKTPQGLRALNTVWAEHLSVEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KK+ + G I Q+L + K V+RVIAHTQ +
Sbjct: 122 WYKSKRKAFTKYEKKYAN--GSGAIDQELDALKKNADVVRVIAHTQVR------------ 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K+ +QKKAH+MEIQ+NGGSVADK+ +A + E+ +
Sbjct: 168 -----------------------KVKNLKQKKAHMMEIQVNGGSVADKVDFAYKFFEKAV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA+DEMIDCI VTKGKGF+G
Sbjct: 205 PVDAVFAKDEMIDCISVTKGKGFEG 229
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 99/115 (86%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGGSVADK+ +A + E+ +PV VFA+DEMIDCI VTKGKGF+GV +
Sbjct: 173 KQKKAHMMEIQVNGGSVADKVDFAYKFFEKAVPVDAVFAKDEMIDCISVTKGKGFEGVVT 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKV CIGAWHP+RV +TVAR GQ GYHHRTE+NKKIYR+G
Sbjct: 233 RWGVTRLPRKTHRGLRKVGCIGAWHPARVGYTVARPGQHGYHHRTEINKKIYRVG 287
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 92/135 (68%), Gaps = 9/135 (6%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V +RW +LPRKTH+GLRKV CIGAWHP+RV +TVAR GQ GYHHRTE+ K +
Sbjct: 230 VVTRWGVTRLPRKTHRGLRKVGCIGAWHPARVGYTVARPGQHGYHHRTEI----NKKIYR 285
Query: 500 VIKNN-----ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKL 554
V K ASTD+D TEK ITPMGGFPHYG V ND+LMIKG GP+KR+ITLR+
Sbjct: 286 VGKEGDSSHKASTDHDATEKDITPMGGFPHYGIVRNDYLMIKGGIAGPRKRLITLRRSLF 345
Query: 555 LKKRQKKAHLMEIQL 569
+ R+ + I+
Sbjct: 346 KQTRRVATETIAIKF 360
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K LK QKKAH+MEIQ+NGGSVADK+ +A + E+ +PV VFA+DEMIDCI VTK
Sbjct: 166 VRKVKNLK--QKKAHMMEIQVNGGSVADKVDFAYKFFEKAVPVDAVFAKDEMIDCISVTK 223
Query: 609 GKGFKECV 616
GKGF+ V
Sbjct: 224 GKGFEGVV 231
>gi|357017575|gb|AET50816.1| hypothetical protein [Eimeria tenella]
Length = 388
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 181/265 (68%), Gaps = 39/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR RHRGKVK FPKDDP+KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFERPRHGSLGFCPRKRCRRHRGKVKAFPKDDPSKPPHLTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKE+VEAVTI+E+PPMV VG++GY+ETP GLR+ TVWA HLS+ECRRRFYKN
Sbjct: 62 RPGSKLHKKEVVEAVTIVESPPMVCVGLVGYIETPQGLRALSTVWAGHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFT+ SKK+ + + ++ + ++C VIR I HTQ +
Sbjct: 122 WYKSKKKAFTRYSKKYAE---NNKMQAEIDSIKQHCAVIRAICHTQPSKTPTG------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+KAH+MEIQ+NGG+VADK+ + + E P+
Sbjct: 172 -----------------------------LRKAHIMEIQVNGGTVADKVDFVTKMFESPV 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF QDEM+D IGVTKG G KG
Sbjct: 203 PISAVFEQDEMLDVIGVTKGHGVKG 227
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/121 (64%), Positives = 98/121 (80%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
+KAH+MEIQ+NGG+VADK+ + + E P+P+ VF QDEM+D IGVTKG G KGV SR+
Sbjct: 173 RKAHIMEIQVNGGTVADKVDFVTKMFESPVPISAVFEQDEMLDVIGVTKGHGVKGVVSRF 232
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE+NKK+YR+G+G ++
Sbjct: 233 GVTRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTEMNKKVYRIGSGSDPRN 292
Query: 436 G 436
G
Sbjct: 293 G 293
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/140 (58%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V SR+ +LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE+
Sbjct: 218 GVTKGHGVKGVVSRFGVTRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTEM 277
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ S N STD DLTEK ITPMGGFPHYGEV +DF+MIKGC +G KKR IT+
Sbjct: 278 NKKVYRIGSGSDPRNGSTDADLTEKRITPMGGFPHYGEVRSDFIMIKGCIVGCKKRPITM 337
Query: 550 RKMKLLKKRQKKAHLMEIQL 569
RK L R + L I L
Sbjct: 338 RKT--LVPRTSRRALENIHL 355
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KAH+MEIQ+NGG+VADK+ + + E P+P+ VF QDEM+D IGVTKG G K V
Sbjct: 173 RKAHIMEIQVNGGTVADKVDFVTKMFESPVPISAVFEQDEMLDVIGVTKGHGVKGVV 229
>gi|315051194|ref|XP_003174971.1| 60S ribosomal protein L3 [Arthroderma gypseum CBS 118893]
gi|311340286|gb|EFQ99488.1| 60S ribosomal protein L3 [Arthroderma gypseum CBS 118893]
Length = 412
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/273 (53%), Positives = 188/273 (68%), Gaps = 40/273 (14%)
Query: 31 ARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGM 90
R RVK SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGM
Sbjct: 17 GRQRVK-MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGM 75
Query: 91 THIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQE 150
T IVR+ +RPG+K+++KEIVEAVTI+ETPPM+ VG++GY+ETP GLRS TVWAEHLS E
Sbjct: 76 TTIVRDLERPGAKMHRKEIVEAVTIVETPPMIAVGIVGYIETPRGLRSLTTVWAEHLSDE 135
Query: 151 CRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSL 210
+RRFYKNWYKS++KAFT+ +K D + ++L ++ YC V+R++AHTQ ++ L
Sbjct: 136 VKRRFYKNWYKSKKKAFTRYAKTHADAA---STTRELERIKNYCTVVRLLAHTQIRKTPL 192
Query: 211 HQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWA 270
+QKKAHLME+Q+NGGSVA+K+ +A
Sbjct: 193 ------------------------------------KQKKAHLMEVQVNGGSVAEKVEFA 216
Query: 271 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+PI V VF +DE++D I VTKG GF G
Sbjct: 217 HGLFEKPIDVDSVFEKDEVVDVIAVTKGHGFSG 249
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/115 (73%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVA+K+ +A E+PI V VF +DE++D I VTKG GF GVTS
Sbjct: 193 KQKKAHLMEVQVNGGSVAEKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTKGHGFSGVTS 252
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G
Sbjct: 253 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYRIG 307
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 88/116 (75%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 246 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYR 305
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++M+KG G +KRV+TLRK
Sbjct: 306 IGKADDEGNASTDFDVSKKRITPMGGFVRYGEVKNDYVMLKGSIPGVRKRVVTLRK 361
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLME+Q+NGGSVA+K+ +A E+PI V VF +DE++D I VTK
Sbjct: 187 IRKTPL---KQKKAHLMEVQVNGGSVAEKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTK 243
Query: 609 GKGF 612
G GF
Sbjct: 244 GHGF 247
>gi|116791630|gb|ABK26048.1| unknown [Picea sitchensis]
gi|224285374|gb|ACN40410.1| unknown [Picea sitchensis]
Length = 389
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 186/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FP+DD +KP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDQSKPCKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVT++ETPPMVIVGV+ Y++TP GLR+ TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY++++KAFTK +KK+ + GKK I +L KM KY VIRV+AHTQ ++ + ++
Sbjct: 122 WYRAKKKAFTKYAKKYDSEEGKKDIQTELEKMKKYATVIRVLAHTQIKKMKGLKQKK--- 178
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
AHLMEIQ+NGG+VA K+ +A E+ +
Sbjct: 179 --------------------------------AHLMEIQVNGGTVAQKVDYAYNFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +F +DEM+D IGVTKGKG++G
Sbjct: 207 PIDALFQKDEMVDIIGVTKGKGYEG 231
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 94/111 (84%)
Query: 318 AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHT 377
AHLMEIQ+NGG+VA K+ +A E+ +P+ +F +DEM+D IGVTKGKG++GV +RW
Sbjct: 179 AHLMEIQVNGGTVAQKVDYAYNFFEKQVPIDALFQKDEMVDIIGVTKGKGYEGVVTRWGV 238
Query: 378 KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++G
Sbjct: 239 TRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIG 289
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 108/163 (66%), Gaps = 11/163 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 FLCKKKYLSMVIKNN-----ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K + + K + A T++D TEK ITPMGGFPHYG + +D++MI+GCC+G KK
Sbjct: 282 ----NKKIYKIGKADQESHKAMTEFDRTEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKK 337
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
RV+TLR+ LLK+ + A L EI+L + K R Q
Sbjct: 338 RVVTLRQ-SLLKQTSRTA-LEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 42/55 (76%)
Query: 562 AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
AHLMEIQ+NGG+VA K+ +A E+ +P+ +F +DEM+D IGVTKGKG++ V
Sbjct: 179 AHLMEIQVNGGTVAQKVDYAYNFFEKQVPIDALFQKDEMVDIIGVTKGKGYEGVV 233
>gi|148235098|ref|NP_001091345.1| uncharacterized protein LOC100037184 [Xenopus laevis]
gi|125858902|gb|AAI29593.1| LOC100037184 protein [Xenopus laevis]
Length = 405
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 160/282 (56%), Positives = 199/282 (70%), Gaps = 34/282 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P+KR+ RHRGKVK FP+DD +KP HLTAF+GYKAGMTHIVRE
Sbjct: 2 SHRKFEAPRHGSLGFLPRKRTRRHRGKVKSFPRDDASKPCHLTAFLGYKAGMTHIVREVI 61
Query: 99 RPGSK-INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
RPGSK ++ KEIVEAVTI+ETPPMV+VGV+GYV TP GLR+ TVWA++LS+EC+RRFYK
Sbjct: 62 RPGSKALHNKEIVEAVTIIETPPMVVVGVVGYVATPRGLRALTTVWAQNLSEECKRRFYK 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK +KK++ GKK I +L ++ KYC V+RVIAHTQ
Sbjct: 122 TWYKSKKKAFTKYAKKYETDAGKKEIDHELERIKKYCSVVRVIAHTQ------------- 168
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
S + + D RQ+KAH+ME+Q+NGGSVADK+ +AR EQ
Sbjct: 169 ------MSKMRGARAD-------------RQRKAHIMEVQVNGGSVADKVDFARGLFEQQ 209
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
+PV VF Q+E +D I VTKGKGF+G +KK Q+K H
Sbjct: 210 VPVKSVFGQNENVDIIAVTKGKGFEGVTFRWG-VKKLQRKTH 250
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/125 (74%), Positives = 106/125 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
RQ+KAH+ME+Q+NGGSVADK+ +AR EQ +PV VF Q+E +D I VTKGKGF+GVT
Sbjct: 179 RQRKAHIMEVQVNGGSVADKVDFARGLFEQQVPVKSVFGQNENVDIIAVTKGKGFEGVTF 238
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW KKL RKTH+GLRKVACIGAWHP+RV FTV RAGQ GYHHRTELNKKIYR+G GIHT
Sbjct: 239 RWGVKKLQRKTHRGLRKVACIGAWHPARVGFTVPRAGQNGYHHRTELNKKIYRIGDGIHT 298
Query: 434 KDGKV 438
KDGKV
Sbjct: 299 KDGKV 303
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 109/152 (71%), Gaps = 13/152 (8%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
VT RW KKL RKTH+GLRKVACIGAWHP+RV FTV RAGQ GYHHRTEL KK Y
Sbjct: 236 VTFRWGVKKLQRKTHRGLRKVACIGAWHPARVGFTVPRAGQNGYHHRTEL--NKKIYRIG 293
Query: 498 -------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
V+KNNASTDYDLTEKSITPMGGFPHYGEVNNDF+MIKGCC G KKRVITLR
Sbjct: 294 DGIHTKDGKVVKNNASTDYDLTEKSITPMGGFPHYGEVNNDFIMIKGCCAGVKKRVITLR 353
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
K ++ K+AHL EI L + K R
Sbjct: 354 KSLMV--HTKRAHLEEINLKFIDTSSKFGHGR 383
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 6/91 (6%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLK----KRQKKAHLMEIQLNGGSVADKIAWAR 582
E++++ IK C RVI +M ++ RQ+KAH+ME+Q+NGGSVADK+ +AR
Sbjct: 146 EIDHELERIKKYC--SVVRVIAHTQMSKMRGARADRQRKAHIMEVQVNGGSVADKVDFAR 203
Query: 583 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
EQ +PV VF Q+E +D I VTKGKGF+
Sbjct: 204 GLFEQQVPVKSVFGQNENVDIIAVTKGKGFE 234
>gi|430813862|emb|CCJ28827.1| unnamed protein product [Pneumocystis jirovecii]
Length = 402
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 191/265 (72%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR++RHRGKVK FPKDDP KP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRASRHRGKVKSFPKDDPKKPIHLTAFMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+ ++KKEIVEAVT++ETPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGTILHKKEIVEAVTVIETPPLVVVGVVGYVETPRGLRSLTTVWAEHLSDEMKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFT+ SKK+ + K IA++L ++ KYC V+R+I HT
Sbjct: 122 WYKSKKKAFTRYSKKYSET--SKPIARELERIKKYCTVVRIIVHT--------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++ + QKKAH+MEIQLNG +V K+ WAR H E+ +
Sbjct: 165 ---------------------QIRKIPFGQKKAHVMEIQLNGETVDKKVDWARDHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID IGVTKGKG++G
Sbjct: 204 DVKSVFEQDEMIDVIGVTKGKGYEG 228
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 98/116 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH+MEIQLNG +V K+ WAR H E+ + V VF QDEMID IGVTKGKG++GVT+R
Sbjct: 173 QKKAHVMEIQLNGETVDKKVDWARDHFEKTVDVKSVFEQDEMIDVIGVTKGKGYEGVTTR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W T++LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N KIYR+G+G
Sbjct: 233 WGTRRLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKIYRIGSG 288
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 93/131 (70%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW T++LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +
Sbjct: 219 GVTKGKGYEGVTTRWGTRRLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSI 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ S NASTD+D+TEK ITPMGGF YG+V NDF+++ G GP KR++TL
Sbjct: 279 NHKIYRIGSGDDPRNASTDFDITEKQITPMGGFVRYGQVKNDFIILAGSTPGPVKRILTL 338
Query: 550 RKMKLLKKRQK 560
RK L+ +K
Sbjct: 339 RKSLLVHTSRK 349
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R+I +++ + QKKAH+MEIQLNG +V K+ WAR H E+ + V VF QDEMID I
Sbjct: 159 RIIVHTQIRKIPFGQKKAHVMEIQLNGETVDKKVDWARDHFEKTVDVKSVFEQDEMIDVI 218
Query: 605 GVTKGKGFK 613
GVTKGKG++
Sbjct: 219 GVTKGKGYE 227
>gi|348537834|ref|XP_003456398.1| PREDICTED: 60S ribosomal protein L3-like [Oreochromis niloticus]
Length = 422
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 192/265 (72%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG MGF P KRS +HRG+V+ +PKD+P+ PVHLTAF+GYKAGMTH +RE
Sbjct: 16 SHRKFHAPRHGHMGFLPCKRSKKHRGRVRSWPKDNPSHPVHLTAFLGYKAGMTHTLREVH 75
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R G K +K+E VEAVTI+ETPP+++VGV+GY++T GLR+ KT++AEHLS EC+RRFYKN
Sbjct: 76 RTGLKQSKREEVEAVTIIETPPVIVVGVVGYIKTIRGLRALKTIFAEHLSDECKRRFYKN 135
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KKWQD+ GKK + +D M KYC VIRVI H+
Sbjct: 136 WYKSKKKAFTKYAKKWQDETGKKQLDKDFNAMKKYCSVIRVIVHS--------------- 180
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAH+ME+QLNGG+++DK+ WA++HLEQ +
Sbjct: 181 ---------------------QMRLLPLRQKKAHVMEVQLNGGTISDKVDWAKEHLEQAV 219
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKG GFKG
Sbjct: 220 PVSAVFYQDEMIDVIGVTKGHGFKG 244
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAH+ME+QLNGG+++DK+ WA++HLEQ +PV VF QDEMID IGVTKG G
Sbjct: 182 MRLLPLRQKKAHVMEVQLNGGTISDKVDWAKEHLEQAVPVSAVFYQDEMIDVIGVTKGHG 241
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV FT ARAGQKGYHHRTE+NKKIYR+
Sbjct: 242 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGFTEARAGQKGYHHRTEINKKIYRI 301
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 302 GRGLHIQDGKV 312
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 111/149 (74%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV FT ARAGQKGYHHRTE
Sbjct: 235 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGFTEARAGQKGYHHRTE- 293
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VI+NNAST+YD+++K+ITPMGGFP YGEVNNDF+M+KGC +
Sbjct: 294 -INKKIYRIGRGLHIQDGKVIRNNASTNYDISQKTITPMGGFPRYGEVNNDFVMVKGCVI 352
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L + +K +E++
Sbjct: 353 GAKKRVLTLRKSLLTQTSRKYKEGIELKF 381
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ DF +K C RVI +M+LL RQKKAH+ME+QLNGG+++DK+ WA++HLE
Sbjct: 159 QLDKDFNAMKKYC--SVIRVIVHSQMRLLPLRQKKAHVMEVQLNGGTISDKVDWAKEHLE 216
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IGVTKG GFK
Sbjct: 217 QAVPVSAVFYQDEMIDVIGVTKGHGFK 243
>gi|403418102|emb|CCM04802.1| predicted protein [Fibroporia radiculosa]
Length = 939
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 192/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDSKKPVHLTAIMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVTI+ETPP+V+VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTIIETPPLVVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K+IA++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAED-GGKSIARELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGS+ADK+ +A E+P+
Sbjct: 173 ----------------------------SQKKAHLMEIQVNGGSIADKVEFAHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG VF QDE++D I VTKG GF+G
Sbjct: 205 EVGTVFEQDEVVDVIAVTKGHGFEG 229
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 101/116 (87%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGS+ADK+ +A E+P+ VG VF QDE++D I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSIADKVEFAHGLFEKPVEVGTVFEQDEVVDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 104/144 (72%), Gaps = 2/144 (1%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL +
Sbjct: 226 GFEGVTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
S + NAST++D+T+K+ITPMGGFPHYG V ND+LM+KG G KKRVIT+RK ++
Sbjct: 286 IGSGDDEANASTEHDITKKTITPMGGFPHYGIVKNDYLMLKGSIPGTKKRVITIRKSLMV 345
Query: 556 KKRQKKAHLMEIQLNGGSVADKIA 579
++ L ++QL + K A
Sbjct: 346 HTSRRD--LEKVQLKFIDTSSKFA 367
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGS+ADK+ +A E+P+ VG VF QDE++D I
Sbjct: 160 RVLAHTQIRKTGLSQKKAHLMEIQVNGGSIADKVEFAHGLFEKPVEVGTVFEQDEVVDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|168040500|ref|XP_001772732.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168040502|ref|XP_001772733.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675957|gb|EDQ62446.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675958|gb|EDQ62447.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 185/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+AR RGKVK FPKD +K HLT+F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARSRGKVKTFPKDVASKEPHLTSFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VG++ Y++TP GLRS TVWA+HLS E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPMVVVGLVAYIKTPRGLRSLNTVWAQHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAF+K SK+++ + GKK + +L +M KY VIRV+AHTQ +
Sbjct: 122 WYKSKKKAFSKYSKRYESEEGKKDVESELERMKKYASVIRVLAHTQVR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KL +QKKAHL EIQ+NGGS+A K+ + + E+ +
Sbjct: 170 -----------------------KLKGIKQKKAHLAEIQVNGGSIAAKVDFGYKLFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVT+G G++G
Sbjct: 207 PVDSVFRKDEMIDIIGVTRGHGYEG 231
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/120 (65%), Positives = 98/120 (81%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHL EIQ+NGGS+A K+ + + E+ +PV VF +DEMID IGVT+G G+
Sbjct: 170 KLKGIKQKKAHLAEIQVNGGSIAAKVDFGYKLFEKEVPVDSVFRKDEMIDIIGVTRGHGY 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKVG 289
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 10/171 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTRGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVIKN----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ KK Y + + +AST++D+TEK ITPMGGF HYG V D+LMIKG MGPKKR
Sbjct: 281 -MNKKVYKVGKVADKQSFSASTEFDVTEKEITPMGGFAHYGIVREDYLMIKGGVMGPKKR 339
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR--QHLEQPIPVGQV 594
VITLR+ L K+ ++ L +I+L + K R LE+ G+V
Sbjct: 340 VITLRQS--LYKQVSRSALEDIKLKFIDTSSKFGHGRFQTSLEKAKVYGKV 388
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K +K QKKAHL EIQ+NGGS+A K+ + + E+ +PV VF +DEMID IGVT+
Sbjct: 168 VRKLKGIK--QKKAHLAEIQVNGGSIAAKVDFGYKLFEKEVPVDSVFRKDEMIDIIGVTR 225
Query: 609 GKGFKECV 616
G G++ V
Sbjct: 226 GHGYEGVV 233
>gi|392568120|gb|EIW61294.1| 60S ribosomal protein L3 [Trametes versicolor FP-101664 SS1]
Length = 388
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 192/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDPKKPVHLTAIMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPM++VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVVETPPMIVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K+IA++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAED-GGKSIARELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QK+AHLMEIQ+NGGS+ADK+ +A E+P+
Sbjct: 173 ----------------------------TQKRAHLMEIQVNGGSIADKVEFANGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDE+ID I VTKG GF+G
Sbjct: 205 EVSSVFEQDEVIDVIAVTKGHGFEG 229
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 100/116 (86%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QK+AHLMEIQ+NGGS+ADK+ +A E+P+ V VF QDE+ID I VTKG GF+GVT R
Sbjct: 174 QKRAHLMEIQVNGGSIADKVEFANGLFEKPVEVSSVFEQDEVIDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/130 (63%), Positives = 99/130 (76%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
NAST++D+T+K+ITPMGGFPHYG V ND+LM+KG G KKRVITLRK ++ +
Sbjct: 290 EDDANASTEHDVTKKAITPMGGFPHYGIVKNDYLMLKGSIPGTKKRVITLRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L ++QL
Sbjct: 350 RD--LEKVQL 357
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QK+AHLMEIQ+NGGS+ADK+ +A E+P+ V VF QDE+ID I
Sbjct: 160 RVLAHTQIRKTGLTQKRAHLMEIQVNGGSIADKVEFANGLFEKPVEVSSVFEQDEVIDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|328773128|gb|EGF83165.1| hypothetical protein BATDEDRAFT_29178 [Batrachochytrium
dendrobatidis JAM81]
Length = 390
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/281 (56%), Positives = 197/281 (70%), Gaps = 38/281 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHGS+GF P+KR+ RHRGK K FP+DD KPVHLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGSLGFLPRKRARRHRGKCKSFPRDDAKKPVHLTAFLGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAV+++E PPMV+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVSVIEAPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ + K I L+++ KYC+V+RVI HTQ Q+ L
Sbjct: 122 WYKSKRKAFTKYAKKYTE-ADAKPIESQLQRIQKYCQVVRVICHTQIQKVRLG------- 173
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+MEIQLNGGSVADK+AWA+ H E+ +
Sbjct: 174 -----------------------------TKKAHVMEIQLNGGSVADKVAWAKDHFEKTV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
+ +F QDEMID IG+TKG GF+G ++A +KK +K H
Sbjct: 205 ELSSIFEQDEMIDIIGITKGHGFEG-VVARWGVKKLPRKTH 244
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+MEIQLNGGSVADK+AWA+ H E+ + + +F QDEMID IG+TKG GF+GV +RW
Sbjct: 175 KKAHVMEIQLNGGSVADKVAWAKDHFEKTVELSSIFEQDEMIDIIGITKGHGFEGVVARW 234
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KKLPRKTHKGLRKVACIGAWHPSRVQF V RAGQ GYHHRTE+NKK+YR+G
Sbjct: 235 GVKKLPRKTHKGLRKVACIGAWHPSRVQFAVPRAGQDGYHHRTEMNKKVYRVG 287
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 88/158 (55%), Positives = 104/158 (65%), Gaps = 2/158 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G V +RW KKLPRKTHKGLRKVACIGAWHPSRVQF V RAGQ GYHHRTE+
Sbjct: 220 GITKGHGFEGVVARWGVKKLPRKTHKGLRKVACIGAWHPSRVQFAVPRAGQDGYHHRTEM 279
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ KN+AST++DLT K ITPMGGFPHYG +N D+LMIKG C G +KRV+TL
Sbjct: 280 NKKVYRVGKAGDKNSASTEFDLTTKDITPMGGFPHYGMINEDWLMIKGSCPGVRKRVVTL 339
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
RK L+ K++ L ++ L + K R Q
Sbjct: 340 RKSLLV--HTKRSALEKVSLKFIDTSSKFGHGRFQTSQ 375
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 54/72 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +++ ++ KKAH+MEIQLNGGSVADK+AWA+ H E+ + + +F QDEMID I
Sbjct: 160 RVICHTQIQKVRLGTKKAHVMEIQLNGGSVADKVAWAKDHFEKTVELSSIFEQDEMIDII 219
Query: 605 GVTKGKGFKECV 616
G+TKG GF+ V
Sbjct: 220 GITKGHGFEGVV 231
>gi|452819751|gb|EME26804.1| 60S ribosomal protein L3 isoform 2 [Galdieria sulphuraria]
gi|452819752|gb|EME26805.1| 60S ribosomal protein L3 isoform 1 [Galdieria sulphuraria]
Length = 388
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 188/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ R RG++K FPKDD +KP HLT F+ YKAGMTH+VR+ D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRARRQRGRIKAFPKDDSSKPCHLTGFLSYKAGMTHVVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE+VEAVTILE PPMV+VG++GY+ETP GLRS KTVWAEHLS EC+RRFYKN
Sbjct: 62 KPGSKLHKKEVVEAVTILEAPPMVVVGIVGYIETPRGLRSLKTVWAEHLSDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +K ++ G + I +DL KM KYC VIRV+ HT
Sbjct: 122 WYKSKKKAFTKYAKVKYEQ-GGEAIKRDLEKMKKYCSVIRVLVHT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+ L QKKAH+ EIQ+NGG+VA+K+ +A E+ +
Sbjct: 166 ---------------------QMRKLNIGQKKAHIAEIQVNGGTVAEKVDFATGLFEKTV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V QVF++DEMID IGVTKGKGF+G
Sbjct: 205 SVDQVFSKDEMIDAIGVTKGKGFEG 229
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 102/129 (79%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+ L QKKAH+ EIQ+NGG+VA+K+ +A E+ + V QVF++DEMID IGVTKGKG
Sbjct: 167 MRKLNIGQKKAHIAEIQVNGGTVAEKVDFATGLFEKTVSVDQVFSKDEMIDAIGVTKGKG 226
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F+GV RW +LPRKTH+GLRKVACIGAWHP+R+QF+V RAGQ GYHHRT++N KIYR+
Sbjct: 227 FEGVIHRWGVTRLPRKTHRGLRKVACIGAWHPARIQFSVPRAGQNGYHHRTQMNLKIYRI 286
Query: 428 GAGIHTKDG 436
G + K G
Sbjct: 287 AKGNNLKSG 295
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 93/125 (74%), Gaps = 6/125 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V RW +LPRKTH+GLRKVACIGAWHP+R+QF+V RAGQ GYHHRT++
Sbjct: 220 GVTKGKGFEGVIHRWGVTRLPRKTHRGLRKVACIGAWHPARIQFSVPRAGQNGYHHRTQM 279
Query: 490 FLCKKKYLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L K + NN ST++DLTEK+ITP+GGFPHYG VN DFLM++G +GP+KRV
Sbjct: 280 NL---KIYRIAKGNNLKSGSTEFDLTEKAITPIGGFPHYGIVNEDFLMVRGSVLGPRKRV 336
Query: 547 ITLRK 551
ITLRK
Sbjct: 337 ITLRK 341
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +M+ L QKKAH+ EIQ+NGG+VA+K+ +A E+ + V QVF++DEMID I
Sbjct: 160 RVLVHTQMRKLNIGQKKAHIAEIQVNGGTVAEKVDFATGLFEKTVSVDQVFSKDEMIDAI 219
Query: 605 GVTKGKGFKECVH 617
GVTKGKGF+ +H
Sbjct: 220 GVTKGKGFEGVIH 232
>gi|115383888|ref|XP_001208491.1| 60S ribosomal protein L3 [Aspergillus terreus NIH2624]
gi|114196183|gb|EAU37883.1| 60S ribosomal protein L3 [Aspergillus terreus NIH2624]
Length = 395
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/255 (56%), Positives = 181/255 (70%), Gaps = 37/255 (14%)
Query: 49 GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKE 108
GS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ DRPG+K++KKE
Sbjct: 15 GSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKE 74
Query: 109 IVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFT 168
IVEAVTI+ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKNWYKS++KAFT
Sbjct: 75 IVEAVTIVETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFT 134
Query: 169 KASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVN 228
K +KK D+ G I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 135 KYAKKHADENG-SAITRELERIKKYCTVVRVLAHTQVRKTPL------------------ 175
Query: 229 KTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 288
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DE
Sbjct: 176 ------------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDE 217
Query: 289 MIDCIGVTKGKGFKG 303
MID I VTKG GF+G
Sbjct: 218 MIDVIAVTKGHGFQG 232
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 176 KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 235
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 236 RWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQMGYHHRTSCNHKVFRIGKG 292
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 97/132 (73%), Gaps = 6/132 (4%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT C K +
Sbjct: 233 VTSRWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQMGYHHRTS---CNHKVFRI 289
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLK 556
+ NASTD+D+++K ITPMGGF HYGEV ND++M+KG G KKRV+TLRK +
Sbjct: 290 GKGSDEGNASTDFDVSKKQITPMGGFVHYGEVKNDYVMLKGSIPGVKKRVMTLRKTLYPQ 349
Query: 557 KRQKKAHLMEIQ 568
++ +E++
Sbjct: 350 TNRRATEKVELK 361
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I
Sbjct: 163 RVLAHTQVRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 222
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 223 AVTKGHGFQ 231
>gi|330805639|ref|XP_003290787.1| 60S ribosomal protein L3 [Dictyostelium purpureum]
gi|325079065|gb|EGC32684.1| 60S ribosomal protein L3 [Dictyostelium purpureum]
Length = 399
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/266 (54%), Positives = 190/266 (71%), Gaps = 37/266 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG++GF P+KR++RH+GKVK FPKDD T+ VHLTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEAPRHGNLGFRPRKRASRHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHIVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE+VEAVTILE PPM IVG++GY+ET GL+++KTVWA+HLS RRR YKN
Sbjct: 62 KPGSKMHKKEVVEAVTILECPPMYIVGLVGYIETAQGLKTYKTVWAQHLSDNFRRRLYKN 121
Query: 159 WYKSR-QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS+ +KAFTK K+++ + GKK I L+ + K C V+RVIAHTQ
Sbjct: 122 WYKSKSKKAFTKYVKQYETEEGKKAIEASLQAIKKRCSVVRVIAHTQ------------- 168
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
+NK L+ QKKAH++EIQ+NGGS+ +K+ +A + E+
Sbjct: 169 ---------INK--------------LRLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKT 205
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF+++EMID IGVTKGKGF G
Sbjct: 206 VSVSGVFSENEMIDVIGVTKGKGFNG 231
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 95/118 (80%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
L+ QKKAH++EIQ+NGGS+ +K+ +A + E+ + V VF+++EMID IGVTKGKGF G
Sbjct: 172 LRLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVSVSGVFSENEMIDVIGVTKGKGFNG 231
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
V RW +KLPRKTHKGLRKVACIGAWHPSRV TV RAGQ GYHHR E NKKIYR+G
Sbjct: 232 VIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIG 289
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 94/145 (64%), Gaps = 7/145 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G V RW +KLPRKTHKGLRKVACIGAWHPSRV TV RAGQ GYHHR E
Sbjct: 222 GVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVER 281
Query: 489 ----LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
+ + + + + T++DLTEK+I PMGGF HYG V+ DF+M+KGC GP+K
Sbjct: 282 NKKIYRIGQAQPVEGKQISTGKTEFDLTEKTINPMGGFTHYGVVDQDFIMVKGCVAGPRK 341
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQL 569
R +TLRK + + +A L +I L
Sbjct: 342 RALTLRKT--ITPQTSRAALEKISL 364
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI ++ L+ QKKAH++EIQ+NGGS+ +K+ +A + E+ + V VF+++EMID I
Sbjct: 162 RVIAHTQINKLRLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVSVSGVFSENEMIDVI 221
Query: 605 GVTKGKGFKECV 616
GVTKGKGF +
Sbjct: 222 GVTKGKGFNGVI 233
>gi|149065895|gb|EDM15768.1| ribosomal protein L3, isoform CRA_a [Rattus norvegicus]
Length = 238
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 132/180 (73%), Positives = 157/180 (87%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ + L Q ++ T
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKRVLT 181
>gi|291402716|ref|XP_002717715.1| PREDICTED: ribosomal protein L3-like [Oryctolagus cuniculus]
Length = 428
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/235 (60%), Positives = 172/235 (73%), Gaps = 36/235 (15%)
Query: 69 FPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIG 128
F DP+KPVHLTAF+GYKAGMTHIVRE D PGSK+NKKE+VEAVTI+ETPPMV+VG++G
Sbjct: 58 FISLDPSKPVHLTAFLGYKAGMTHIVREVDWPGSKVNKKEVVEAVTIVETPPMVVVGIVG 117
Query: 129 YVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLR 188
YVETP GLR+FKTV+AEH+S EC+RRFYKNW+KS++KAFTK KKWQD GK+ + +D
Sbjct: 118 YVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDAGKRQLDKDFS 177
Query: 189 KMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQ 248
M KYC VI V+AHTQ M+LL +Q
Sbjct: 178 SMKKYCLVISVLAHTQ------------------------------------MRLLPLQQ 201
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
KKAHLMEIQ+NGG+VA+K+ WA++ LEQ +PV QVF QD+MID IGVTKGKG+KG
Sbjct: 202 KKAHLMEIQVNGGTVAEKLDWAQERLEQQVPVSQVFGQDKMIDVIGVTKGKGYKG 256
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL +QKKAHLMEIQ+NGG+VA+K+ WA++ LEQ +PV QVF QD+MID IGVTKGKG
Sbjct: 194 MRLLPLQQKKAHLMEIQVNGGTVAEKLDWAQERLEQQVPVSQVFGQDKMIDVIGVTKGKG 253
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKL RKTH+GLRKVACIGAWHP+ V F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 254 YKGVTSRWHTKKLLRKTHRGLRKVACIGAWHPAHVAFSVARAGQKGYHHRTEINKKIYKI 313
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 314 GQGYLIKDGKL 324
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 110/147 (74%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKL RKTH+GLRKVACIGAWHP+ V F+VARAGQKGYHHRTE
Sbjct: 247 GVTKGKGYKGVTSRWHTKKLLRKTHRGLRKVACIGAWHPAHVAFSVARAGQKGYHHRTEI 306
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNAST+YDL++KSI P+GGF HY EV NDF+M+KGC +G
Sbjct: 307 NKKIYKIGQGYLIKDGKLIKNNASTNYDLSDKSINPLGGFVHYREVTNDFIMLKGCVVGT 366
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 367 KKRVLTLRKSLLVQTKRRALEKIDLKF 393
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ DF +K C+ V+ +M+LL +QKKAHLMEIQ+NGG+VA+K+ WA++ LE
Sbjct: 171 QLDKDFSSMKKYCL--VISVLAHTQMRLLPLQQKKAHLMEIQVNGGTVAEKLDWAQERLE 228
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QD+MID IGVTKGKG+K
Sbjct: 229 QQVPVSQVFGQDKMIDVIGVTKGKGYK 255
>gi|320166087|gb|EFW42986.1| ribosomal protein L3 isoform b [Capsaspora owczarzaki ATCC 30864]
Length = 416
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 149/266 (56%), Positives = 193/266 (72%), Gaps = 35/266 (13%)
Query: 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREA 97
++HRKFSAPRHGS+GF P+KRSA HRG+VK FP+DD +KP HLTAF+GYKAGMTH+VRE
Sbjct: 20 SAHRKFSAPRHGSLGFAPRKRSATHRGRVKSFPRDDASKPCHLTAFLGYKAGMTHVVREV 79
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
DR GSK+NKKEIVEAVTI+E PP+V+VG +GYV TP GLR+ TVWAEHLS+E RRRFYK
Sbjct: 80 DRMGSKLNKKEIVEAVTIVEAPPVVVVGAVGYVATPRGLRALTTVWAEHLSEEVRRRFYK 139
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
NWY+ ++KAFTK +KK+ + GKK+I ++ ++ KYC V+R++ HTQ ++ +L
Sbjct: 140 NWYQCKKKAFTKYAKKYSTEEGKKSIEKEFDRIKKYCSVVRLLVHTQTKKLNLGG----- 194
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAH+MEIQ+NGGSVADK+ +AR H E+
Sbjct: 195 ------------------------------QKKAHIMEIQVNGGSVADKLKYARSHFEKE 224
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I + VF+++EM+D IGVT+GKGF G
Sbjct: 225 ISLKDVFSENEMVDVIGVTRGKGFTG 250
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/116 (72%), Positives = 102/116 (87%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH+MEIQ+NGGSVADK+ +AR H E+ I + VF+++EM+D IGVT+GKGF GVT R
Sbjct: 195 QKKAHIMEIQVNGGSVADKLKYARSHFEKEISLKDVFSENEMVDVIGVTRGKGFTGVTYR 254
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
+ T++LPRK+HKGLRKVACIGAWHP+ V +VARAGQKGYHHRTELNKKIYR+GAG
Sbjct: 255 FGTRRLPRKSHKGLRKVACIGAWHPANVNRSVARAGQKGYHHRTELNKKIYRVGAG 310
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/131 (64%), Positives = 100/131 (76%), Gaps = 7/131 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT R+ T++LPRK+HKGLRKVACIGAWHP+ V +VARAGQKGYHHRTEL
Sbjct: 241 GVTRGKGFTGVTYRFGTRRLPRKSHKGLRKVACIGAWHPANVNRSVARAGQKGYHHRTEL 300
Query: 490 FLCKKKY-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
KK Y S KNNAST+YD+TEK+ITP+GGFPHYG+V DFL++KGC MG KK
Sbjct: 301 --NKKIYRVGAGASSGAKNNASTEYDITEKNITPLGGFPHYGQVKEDFLILKGCIMGAKK 358
Query: 545 RVITLRKMKLL 555
RVITLRK L+
Sbjct: 359 RVITLRKSLLV 369
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ +F IK C + V T K KL QKKAH+MEIQ+NGGSVADK+ +AR H E+
Sbjct: 165 IEKEFDRIKKYCSVVRLLVHTQTK-KLNLGGQKKAHIMEIQVNGGSVADKLKYARSHFEK 223
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGF 612
I + VF+++EM+D IGVT+GKGF
Sbjct: 224 EISLKDVFSENEMVDVIGVTRGKGF 248
>gi|384491983|gb|EIE83179.1| 60S ribosomal protein L3 [Rhizopus delemar RA 99-880]
Length = 387
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 188/265 (70%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+ HRG+VK +PKDD KPVHLTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKYEAPRHGHLGFGPRKRTRSHRGRVKAYPKDDAKKPVHLTAFMGYKAGMTHIVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVEAVT++E P MV+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKKEIVEAVTVIEAPAMVVVGVVGYVETPRGLRSLTTVWAEHLSEEAKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK ++K+ + G K + ++L ++ KYC V+RVIAHTQ + LH
Sbjct: 122 WYRSKKKAFTKYAQKYAE--GAKDVTRELERIKKYCSVVRVIAHTQISKAKLH------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+KAH+MEIQLNGGSV K+ WAR+H E+ +
Sbjct: 173 -----------------------------QRKAHIMEIQLNGGSVEQKVDWAREHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG +F QDEMID I TKG GF+G
Sbjct: 204 TVGSIFEQDEMIDIIATTKGHGFEG 228
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
Q+KAH+MEIQLNGGSV K+ WAR+H E+ + VG +F QDEMID I TKG GF+GVT R
Sbjct: 173 QRKAHIMEIQLNGGSVEQKVDWAREHFEKEVTVGSIFEQDEMIDIIATTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHPSRV ++VARAGQ+GYH RTE+NKKIYR+ G K
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPSRVMYSVARAGQRGYHRRTEINKKIYRIATGADAK 292
Query: 435 DG 436
G
Sbjct: 293 SG 294
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 102/143 (71%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHPSRV ++VARAGQ+GYH RTE+ + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPSRVMYSVARAGQRGYHRRTEINKKIYRIATG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ +T+YDLTEK ITPMGGFPHYGEVN DF+MIKGCC G KKRVITLRK L
Sbjct: 289 ADAKSGTTEYDLTEKQITPMGGFPHYGEVNEDFVMIKGCCAGAKKRVITLRKS--LTVHT 346
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
K++ L ++ L + K R
Sbjct: 347 KRSALEKVTLKFIDTSSKFGHGR 369
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+V + IK C RVI ++ K Q+KAH+MEIQLNGGSV K+ WAR+H E
Sbjct: 143 DVTRELERIKKYC--SVVRVIAHTQISKAKLHQRKAHIMEIQLNGGSVEQKVDWAREHFE 200
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
+ + VG +F QDEMID I TKG GF+ H
Sbjct: 201 KEVTVGSIFEQDEMIDIIATTKGHGFEGVTH 231
>gi|342319576|gb|EGU11523.1| 60S ribosomal protein L3 [Rhodotorula glutinis ATCC 204091]
Length = 439
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 149/267 (55%), Positives = 190/267 (71%), Gaps = 36/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
+ SHRK+ PR GS+GF P+KR+ARHRGK K FPKDD PVHLTAF+GYKAGMTH+VR+
Sbjct: 49 RMSHRKYEHPRCGSLGFLPRKRAARHRGKAKSFPKDDAKAPVHLTAFLGYKAGMTHVVRD 108
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
DRPGSK++KKE+VEAVT++ETPPMV+VGV+GYVETP GLRS TVWAEHLS E +RRFY
Sbjct: 109 LDRPGSKMHKKEVVEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFY 168
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWY+S++KAFTK +KK ++ ++A++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 169 KNWYRSKKKAFTKYAKKHAEQGSASSVARELERITKYCTVVRVLAHTQIRKTGL------ 222
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
QKKAHLMEIQ+NGGSVADK+ +A+ H E+
Sbjct: 223 ------------------------------AQKKAHLMEIQVNGGSVADKVEFAKSHFEK 252
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V +F QDE ID IGVT+G GF+G
Sbjct: 253 TVDVSSIFEQDENIDVIGVTQGHGFEG 279
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 85/114 (74%), Positives = 99/114 (86%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSVADK+ +A+ H E+ + V +F QDE ID IGVT+G GF+GVT R
Sbjct: 224 QKKAHLMEIQVNGGSVADKVEFAKSHFEKTVDVSSIFEQDENIDVIGVTQGHGFEGVTHR 283
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W TKKLPRKTHKGLRKVACIGAWHPS+V ++VARAGQ GYHHRTELNKK+YR+G
Sbjct: 284 WGTKKLPRKTHKGLRKVACIGAWHPSKVMYSVARAGQDGYHHRTELNKKVYRIG 337
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 101/153 (66%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT RW TKKLPRKTHKGLRKVACIGAWHPS+V ++VARAGQ GYHHRTEL
Sbjct: 270 GVTQGHGFEGVTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMYSVARAGQDGYHHRTEL 329
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + +AST++D+T+K+ITP+GGF YG V ND++MIKG C G KRV+TL
Sbjct: 330 NKKVYRIGKADDEGSASTEFDITKKAITPLGGFVRYGVVKNDWVMIKGSCPGVVKRVLTL 389
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK L +A L +I L + K R
Sbjct: 390 RKS--LVPHTSRASLEKISLKLIDTSSKFGHGR 420
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAHLMEIQ+NGGSVADK+ +A+ H E+ + V +F QDE ID IGVT+G GF+ H
Sbjct: 224 QKKAHLMEIQVNGGSVADKVEFAKSHFEKTVDVSSIFEQDENIDVIGVTQGHGFEGVTH 282
>gi|66802278|ref|XP_629921.1| 60S ribosomal protein L3 [Dictyostelium discoideum AX4]
gi|464637|sp|P34113.2|RL3_DICDI RecName: Full=60S ribosomal protein L3
gi|167816|gb|AAA99508.1| ribosomal protein [Dictyostelium discoideum]
gi|60463269|gb|EAL61461.1| 60S ribosomal protein L3 [Dictyostelium discoideum AX4]
Length = 398
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/266 (54%), Positives = 191/266 (71%), Gaps = 37/266 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG++GF P+KR+ARH+GKVK FPKDD T+ VHLTAF+GYKAGMTH+VR+ +
Sbjct: 2 SHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEAVTI+E PPM IVG++GYVET GL+++KTVWA+HLS RRR YKN
Sbjct: 62 KPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKN 121
Query: 159 WYKSR-QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS+ +KAFTK K+++ + GKK+I L+ + K C V+RVIAHTQ +H+
Sbjct: 122 WYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQ-----VHK----- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
LK QKKAH++EIQ+NGGS+ +K+ +A + E+
Sbjct: 172 --------------------------LKLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKT 205
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VFA++E+ID IGVTKGKGF G
Sbjct: 206 VNVTGVFAENELIDVIGVTKGKGFNG 231
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
LK QKKAH++EIQ+NGGS+ +K+ +A + E+ + V VFA++E+ID IGVTKGKGF G
Sbjct: 172 LKLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNG 231
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
V RW +KLPRKTHKGLRKVACIGAWHPSRV TV RAGQ GYHHR E NKKIYR+G
Sbjct: 232 VIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQA 291
Query: 431 IHTKDGK 437
+DGK
Sbjct: 292 -QPEDGK 297
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V RW +KLPRKTHKGLRKVACIGAWHPSRV TV RAGQ GYHHR E
Sbjct: 222 GVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVE- 280
Query: 490 FLCKKKYLSMVIK-------NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
KK Y + + T++DLTEK+I PMGGF HYG V ++FLM+KGC GP
Sbjct: 281 -RNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGP 339
Query: 543 KKRVITLRK 551
+KR +TLRK
Sbjct: 340 RKRALTLRK 348
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI ++ LK QKKAH++EIQ+NGGS+ +K+ +A + E+ + V VFA++E+ID I
Sbjct: 162 RVIAHTQVHKLKLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVI 221
Query: 605 GVTKGKGFKECV 616
GVTKGKGF +
Sbjct: 222 GVTKGKGFNGVI 233
>gi|409049883|gb|EKM59360.1| hypothetical protein PHACADRAFT_205564 [Phanerochaete carnosa
HHB-10118-sp]
Length = 403
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 150/267 (56%), Positives = 191/267 (71%), Gaps = 37/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
K SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMTH+VR+
Sbjct: 15 KMSHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDIKKPVHLTAVMGYKAGMTHVVRD 74
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
DRPGSK++K+E+VEAVT++ETPPMV+VGV+GYVETP GLR+ TVWA HLS E +RRFY
Sbjct: 75 LDRPGSKMHKREVVEAVTVIETPPMVVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFY 134
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWY+S++KAFT+ +KK + G K++ ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 135 KNWYRSKKKAFTRYAKKVSED-GGKSVTRELERIRKYCTVVRVLAHTQIRKTGL------ 187
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
QKKAHLMEIQ+NGGS+ADK+ +A E+
Sbjct: 188 ------------------------------SQKKAHLMEIQVNGGSIADKVEFAHGLFEK 217
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
P PV VF QDE++D I VTKG GF+G
Sbjct: 218 PFPVTSVFEQDEVVDVIAVTKGHGFEG 244
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 100/116 (86%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGS+ADK+ +A E+P PV VF QDE++D I VTKG GF+GVT R
Sbjct: 189 QKKAHLMEIQVNGGSIADKVEFAHGLFEKPFPVTSVFEQDEVVDVIAVTKGHGFEGVTHR 248
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G
Sbjct: 249 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 304
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 96/130 (73%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 245 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 304
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
NAST+ D+T K ITPMGGFPHYG + NDFL++KG G KKR+IT+RK ++ +
Sbjct: 305 EDVANASTESDITNKQITPMGGFPHYGIIKNDFLILKGSIPGTKKRIITIRKSLMVHTSR 364
Query: 560 KKAHLMEIQL 569
+ L ++QL
Sbjct: 365 RD--LEKVQL 372
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGS+ADK+ +A E+P PV VF QDE++D I
Sbjct: 175 RVLAHTQIRKTGLSQKKAHLMEIQVNGGSIADKVEFAHGLFEKPFPVTSVFEQDEVVDVI 234
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 235 AVTKGHGFEGVTH 247
>gi|389744357|gb|EIM85540.1| 60S ribosomal protein L3 [Stereum hirsutum FP-91666 SS1]
Length = 388
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAIMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPP+++VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVVETPPLIVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K+I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAEDNG-KSITRELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSV DK+ +A E+P+
Sbjct: 173 ----------------------------AQKKAHLMEIQVNGGSVTDKVEFAHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG VF QDE+ID I VTKG GF+G
Sbjct: 205 EVGSVFEQDEVIDVIAVTKGHGFEG 229
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 104/128 (81%), Gaps = 2/128 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSV DK+ +A E+P+ VG VF QDE+ID I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSVTDKVEFAHGLFEKPVEVGSVFEQDEVIDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G G T
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGLG--TD 291
Query: 435 DGKVSVTS 442
DG S S
Sbjct: 292 DGNASTES 299
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/133 (63%), Positives = 100/133 (75%), Gaps = 8/133 (6%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL KK +
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTEL---NKKIYRI 286
Query: 500 VI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLK 556
+ NAST+ D+T+K+ITPMGGFPHYG V ND+LM+KG G KKRVITLRK ++
Sbjct: 287 GLGTDDGNASTESDITKKTITPMGGFPHYGIVKNDYLMLKGSIPGTKKRVITLRKSLMVH 346
Query: 557 KRQKKAHLMEIQL 569
++ L ++QL
Sbjct: 347 TSRRD--LEKVQL 357
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 44/59 (74%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAHLMEIQ+NGGSV DK+ +A E+P+ VG VF QDE+ID I VTKG GF+ H
Sbjct: 174 QKKAHLMEIQVNGGSVTDKVEFAHGLFEKPVEVGSVFEQDEVIDVIAVTKGHGFEGVTH 232
>gi|46123823|ref|XP_386465.1| RL3_NEUCR 60S ribosomal protein L3 [Gibberella zeae PH-1]
Length = 378
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 179/253 (70%), Gaps = 37/253 (14%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
M + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ DRPG+K NKKEIV
Sbjct: 1 MAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLDRPGAKANKKEIV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
EAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKNWYKS++KAFTK
Sbjct: 61 EAVTIVDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTKY 120
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
+KK + G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 121 AKKHSENNGA-SITRELERIKKYCTVVRVLAHTQIRKTPL-------------------- 159
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
+QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+ V +F QDEMI
Sbjct: 160 ----------------KQKKAHLMEIQVNGGSIADKVSFGQELFEKPVDVSSIFEQDEMI 203
Query: 291 DCIGVTKGKGFKG 303
D + VTKG GF G
Sbjct: 204 DVVAVTKGHGFNG 216
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+ V +F QDEMID + VTKG GF GVT+
Sbjct: 160 KQKKAHLMEIQVNGGSIADKVSFGQELFEKPVDVSSIFEQDEMIDVVAVTKGHGFNGVTA 219
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 220 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 276
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 88/112 (78%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 217 VTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKG 276
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+NA+T+ D+T+K+ITP+GGF YGEV NDF+M+KG G KKRV+TLRK
Sbjct: 277 DADDNAATEIDVTKKTITPLGGFVRYGEVKNDFVMLKGSIPGVKKRVMTLRK 328
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 51/68 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ADK+++ ++ E+P+ V +F QDEMID +
Sbjct: 147 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSIADKVSFGQELFEKPVDVSSIFEQDEMIDVV 206
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 207 AVTKGHGF 214
>gi|409079895|gb|EKM80256.1| hypothetical protein AGABI1DRAFT_84723 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198339|gb|EKV48265.1| hypothetical protein AGABI2DRAFT_135382 [Agaricus bisporus var.
bisporus H97]
Length = 388
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 192/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KRSARHRGKVK FPKDDP KPVHLTA++GYKAGMTH+VR+ +
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRSARHRGKVKSFPKDDPKKPVHLTAYMGYKAGMTHVVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEAVTI+ETPPM++VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREIVEAVTIVETPPMMVVGVVGYVETPRGLRTLTTVWANHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K+I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAED-GGKSIGRELERIRKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGS+ADK+ +A E+P+
Sbjct: 173 ----------------------------SQKKAHLMEIQVNGGSIADKVEFAHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F QDE++D I VTKG GF+G
Sbjct: 205 EISTIFEQDEVVDVIAVTKGHGFEG 229
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/116 (72%), Positives = 100/116 (86%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGS+ADK+ +A E+P+ + +F QDE++D I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSIADKVEFAHGLFEKPVEISTIFEQDEVVDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKI+R+G+G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIFRVGSG 289
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 97/130 (74%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIFRVGSG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
NAST+ D T+KSITPMGGFPHYG V NDFL++KG G KKRVIT+RK ++ +
Sbjct: 290 ADDANASTEADATKKSITPMGGFPHYGIVKNDFLLLKGSIPGIKKRVITIRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L +IQL
Sbjct: 350 RD--LEKIQL 357
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGS+ADK+ +A E+P+ + +F QDE++D I
Sbjct: 160 RVLAHTQIRKTPLSQKKAHLMEIQVNGGSIADKVEFAHGLFEKPVEISTIFEQDEVVDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|118484565|gb|ABK94156.1| unknown [Populus trichocarpa]
Length = 389
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGK K FPKDDPTKP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKAKSFPKDDPTKPCRLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GYV TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVNTPGGLRSLSTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK KK++ + GKK I L K+ KYC VIRV+AHTQ ++
Sbjct: 122 WCKSKKKAFTKYCKKYESEDGKKDIQAQLEKLKKYCTVIRVLAHTQIRK----------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
MK LK QKKAHLMEIQ+NGG VA K+ +A E+ I
Sbjct: 171 ----------------------MKGLK--QKKAHLMEIQVNGGDVAKKVDFAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +F +DEMID IGVTKGKG++G
Sbjct: 207 PIDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 100/121 (82%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG VA K+ +A E+ IP+ +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGDVAKKVDFAYSFFEKQIPIDAIFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTEL+KKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELSKKIYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 108/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY-LSMVIKNN--ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y L + + A T+YD TEK ITP+GGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -LSKKIYKLGKCGQESHCAVTEYDRTEKDITPIGGFPHYGVVKEDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A + EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRVA-MEEIKLKFIDTSSKFGHGR 373
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG VA K+ +A E+ IP+ +F +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGDVAKKVDFAYSFFEKQIPIDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|242219392|ref|XP_002475476.1| 60S ribosomal protein L3 [Postia placenta Mad-698-R]
gi|220725335|gb|EED79327.1| 60S ribosomal protein L3 [Postia placenta Mad-698-R]
Length = 388
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 190/265 (71%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKAFPKDDAQKPVHLTAIMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAV+I+ETPPMV+VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVSIIETPPMVVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K+I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAED-GGKSIGRELERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSVADK+ +A E+P+
Sbjct: 173 ----------------------------SQKKAHLMEIQVNGGSVADKVEFAHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDE++D I VTKG GF+G
Sbjct: 205 EVSTVFEQDEVVDVIAVTKGHGFEG 229
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSVADK+ +A E+P+ V VF QDE++D I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSVADKVEFAHGLFEKPVEVSTVFEQDEVVDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G T
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSGEDT 292
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 98/130 (75%), Gaps = 2/130 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
NAST++D+T+K ITPMGGFPHYG V ND+LM+KG G KKRVIT+RK ++ +
Sbjct: 290 EDTGNASTEHDITKKVITPMGGFPHYGIVKNDYLMLKGSIPGTKKRVITIRKSLMVHTSR 349
Query: 560 KKAHLMEIQL 569
+ L ++QL
Sbjct: 350 RD--LEKVQL 357
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGSVADK+ +A E+P+ V VF QDE++D I
Sbjct: 160 RVLAHTQIRKTGLSQKKAHLMEIQVNGGSVADKVEFAHGLFEKPVEVSTVFEQDEVVDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|37625025|gb|AAQ96336.1| ribosomal protein L3B [Nicotiana tabacum]
Length = 409
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 188/285 (65%), Gaps = 55/285 (19%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDD TKP LTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDTTKPCRLTAFLGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+ETPPM++VGV+GYV+TP GLR TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCELVTIIETPPMIVVGVVGYVKTPRGLRCLSTVWAQHLSEEIKRRFYKN 121
Query: 159 W--------------YK------SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIR 198
W Y+ S++KAF K SKK++ GKK I L KM KYC VIR
Sbjct: 122 WCMSKKKAFAKYSKKYETDNWCMSKKKAFAKYSKKYETDDGKKDINAQLEKMKKYCCVIR 181
Query: 199 VIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQL 258
V+AHTQ + +MK LK QKKAHLMEIQ+
Sbjct: 182 VLAHTQIR---------------------------------KMKGLK--QKKAHLMEIQV 206
Query: 259 NGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
NGG V+ K+ +A E+ IPV +F +DEMID IGVTKGKG++G
Sbjct: 207 NGGDVSQKVDYAYGFFEKQIPVDAIFQKDEMIDIIGVTKGKGYEG 251
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 129/280 (46%), Positives = 158/280 (56%), Gaps = 72/280 (25%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG V+ K+ +A E+ IPV +F +DEMID IGVTKGKG
Sbjct: 191 MKGLK--QKKAHLMEIQVNGGDVSQKVDYAYGFFEKQIPVDAIFQKDEMIDIIGVTKGKG 248
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKK+YR+
Sbjct: 249 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKVYRL 308
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G +AGQ+ + T
Sbjct: 309 G------------------------------------------------KAGQESHSAIT 320
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
E T+ D+T PMGGFPHYG V DFL+IKGCC+GPKKRV+
Sbjct: 321 EF---------------DRTEKDIT-----PMGGFPHYGIVKEDFLLIKGCCVGPKKRVV 360
Query: 548 TLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
TLR+ LL + + A L EI+L + K R Q
Sbjct: 361 TLRQ-SLLNQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 398
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 534 MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 593
M K CC+ +RKMK LK QKKAHLMEIQ+NGG V+ K+ +A E+ IPV
Sbjct: 173 MKKYCCVIRVLAHTQIRKMKGLK--QKKAHLMEIQVNGGDVSQKVDYAYGFFEKQIPVDA 230
Query: 594 VFAQDEMIDCIGVTKGKGFKECV 616
+F +DEMID IGVTKGKG++ V
Sbjct: 231 IFQKDEMIDIIGVTKGKGYEGVV 253
>gi|392593174|gb|EIW82500.1| hypothetical protein CONPUDRAFT_81978 [Coniophora puteana
RWD-64-598 SS2]
Length = 388
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAIMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEAV+I+ETPPM++VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKREIVEAVSIVETPPMMVVGVVGYVETPRGLRTLTTVWANHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + GK T A++L ++ KYC V+RV++HTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKHAEDGGKST-ARELERIRKYCTVVRVLSHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGS+ADK+ +A+ E+P
Sbjct: 173 ----------------------------SQKKAHLMEIQVNGGSIADKVEFAQGLFEKPF 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDE+ID I VTKG GF+G
Sbjct: 205 DVNSIFEQDEVIDVIAVTKGHGFEG 229
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 100/116 (86%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGS+ADK+ +A+ E+P V +F QDE+ID I VTKG GF+GVT R
Sbjct: 174 QKKAHLMEIQVNGGSIADKVEFAQGLFEKPFDVNSIFEQDEVIDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 90/112 (80%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRIGSG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST+ D+T+K+ITPMGGFPHYG V NDFLM+KG G KKRV+TLRK
Sbjct: 290 TDEANASTESDVTKKAITPMGGFPHYGIVKNDFLMLKGSIPGTKKRVVTLRK 341
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV++ +++ QKKAHLMEIQ+NGGS+ADK+ +A+ E+P V +F QDE+ID I
Sbjct: 160 RVLSHTQIRKTGLSQKKAHLMEIQVNGGSIADKVEFAQGLFEKPFDVNSIFEQDEVIDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|395747312|ref|XP_003778589.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L3-like
[Pongo abelii]
Length = 402
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAF+KA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFSKACKRWRDPDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G H +DGK+
Sbjct: 288 GRGPHMEDGKL 298
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 98/125 (78%), Gaps = 11/125 (8%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 284
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y ++KNNAST YD+T K+ITP+GGFPHYGEVNNDF+M+KG G KKRV
Sbjct: 285 YRIGRGPHMEDGKLVKNNASTSYDVTAKAITPLGGFPHYGEVNNDFVMLKGLIAGTKKRV 344
Query: 547 ITLRK 551
ITLRK
Sbjct: 345 ITLRK 349
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>gi|326509435|dbj|BAJ91634.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 388
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 192/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR+ARHRGKVK FPKDDP+KPVHLTA +GYKAGM+H+VR+ D
Sbjct: 2 SHRKFEEPRSGSLGFLPRKRAARHRGKVKSFPKDDPSKPVHLTALMGYKAGMSHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPMV+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFTK +KK + G +IA+++ ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTKYAKKHSENNG-SSIAREIERIRKYCTVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +A+ H E+ +
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKLEFAKSHFEKTV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F Q+++ID IGVT G G +G
Sbjct: 205 DVRSIFEQNQVIDVIGVTSGHGTEG 229
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 97/123 (78%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +A+ H E+ + V +F Q+++ID IGVT G G +GVT
Sbjct: 173 KQKKAHLMEIQVNGGSVADKLEFAKSHFEKTVDVRSIFEQNQVIDVIGVTSGHGTEGVTH 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW +LPRKTH+GLRKVACIGAWHPS V ++V RAGQ GYHHRTE NKKIYR+G G
Sbjct: 233 RWGVTRLPRKTHRGLRKVACIGAWHPSNVMYSVPRAGQNGYHHRTEKNKKIYRIGTGSDV 292
Query: 434 KDG 436
K G
Sbjct: 293 KSG 295
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ + G VT RW +LPRKTH+GLRKVACIGAWHPS V ++V RAGQ GYHHRTE
Sbjct: 220 GVTSGHGTEGVTHRWGVTRLPRKTHRGLRKVACIGAWHPSNVMYSVPRAGQNGYHHRTEK 279
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + + ST+YD+++K+ITPMGGFPHYG VN DF+M+KG G KR + L
Sbjct: 280 NKKIYRIGTGSDVKSGSTEYDISDKTITPMGGFPHYGIVNEDFVMVKGGVPGTLKRPLVL 339
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIA 579
R+ L+ + HL ++ L + K+
Sbjct: 340 RQS--LQVHTSRTHLEQVSLKFIDTSSKLG 367
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +A+ H E+ + V +F Q+++ID I
Sbjct: 160 RVLAHTQIRKTGLKQKKAHLMEIQVNGGSVADKLEFAKSHFEKTVDVRSIFEQNQVIDVI 219
Query: 605 GVTKGKGFKECVH 617
GVT G G + H
Sbjct: 220 GVTSGHGTEGVTH 232
>gi|148672668|gb|EDL04615.1| mCG11520, isoform CRA_a [Mus musculus]
Length = 238
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 131/180 (72%), Positives = 156/180 (86%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ + L Q ++ T
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKRVLT 181
>gi|145527660|ref|XP_001449630.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417218|emb|CAK82233.1| unnamed protein product [Paramecium tetraurelia]
Length = 393
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/391 (40%), Positives = 213/391 (54%), Gaps = 106/391 (27%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG++GF P+KR+ HRG+++ FPKD+ HLTAF G+KAGMTHI+R +
Sbjct: 2 SHRKFEAPRHGNLGFTPRKRTKHHRGRIRAFPKDNTKAQPHLTAFAGFKAGMTHILRTVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+N +VEAVTI+ETPP+V+VG++GY+ETP GLR+ TVW+ ++++ RRFYKN
Sbjct: 62 RPGSKLNGNVVVEAVTIVETPPLVVVGIVGYIETPRGLRALTTVWSTKIAKDTLRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S++KAFT +K + K + L+++ KYC+V+RVI HT
Sbjct: 122 WINSKKKAFTNYNKANAE---PKNLETQLKRIVKYCQVVRVIVHT--------------- 163
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM L RQKK H+ E+Q+NGG+ K+ +A+ LE+ +
Sbjct: 164 ---------------------QMSKLNLRQKKNHVFEVQVNGGNTEQKVNFAKGLLEKEV 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
V QVF Q+E ID +GVTKGKG G +I +K QKK H W R
Sbjct: 203 KVDQVFNQNEQIDVLGVTKGKGVAG-VIKRFGVKHLQKKTHR--------------GWRR 247
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+ CIG WH
Sbjct: 248 ------------------VGCIG----------------------------------GWH 255
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
P+ V+++VAR GQ GYHHRTE+NKKIYR+GA
Sbjct: 256 PANVRYSVARTGQLGYHHRTEMNKKIYRIGA 286
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K L +KTH+G R+V CIG WHP+ V+++VAR GQ GYHHRTE+
Sbjct: 218 GVTKGKGVAGVIKRFGVKHLQKKTHRGWRRVGCIGGWHPANVRYSVARTGQLGYHHRTEM 277
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + KN AST+ DLT K+ITP+GGFPHYGE+ NDFLM+KG +GPKKRV+ L
Sbjct: 278 NKKIYRIGAAGDKNTASTEADLTSKAITPLGGFPHYGEIRNDFLMLKGGIVGPKKRVVLL 337
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK L+ + +KA L EI L + KI R
Sbjct: 338 RK-SLVPQTSRKA-LEEITLKFVDTSSKIGHGR 368
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M L RQKK H+ E+Q+NGG+ K+ +A+ LE+ + V QVF Q+E ID +
Sbjct: 158 RVIVHTQMSKLNLRQKKNHVFEVQVNGGNTEQKVNFAKGLLEKEVKVDQVFNQNEQIDVL 217
Query: 605 GVTKGKG 611
GVTKGKG
Sbjct: 218 GVTKGKG 224
>gi|67540064|ref|XP_663806.1| RL3_NEUCR 60S ribosomal protein L3 [Aspergillus nidulans FGSC A4]
gi|40738798|gb|EAA57988.1| RL3_NEUCR 60S ribosomal protein L3 [Aspergillus nidulans FGSC A4]
Length = 447
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/255 (54%), Positives = 181/255 (70%), Gaps = 37/255 (14%)
Query: 49 GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKE 108
GS+ + P+KR+ARHRG+VK FPKDDP KPVHLTA +GYKAGMT +VR+ DRPG+K++KKE
Sbjct: 67 GSLAYLPRKRAARHRGRVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKE 126
Query: 109 IVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFT 168
IVEA T++ETPP++ VGV+GY+ETP GLRS TVWAEHLS E +RRFYKNWYKS++KAFT
Sbjct: 127 IVEAATVIETPPLIAVGVVGYIETPRGLRSLATVWAEHLSDEVKRRFYKNWYKSKKKAFT 186
Query: 169 KASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVN 228
K +KK ++ G +I +DL ++ KYC V+RV+AHTQ ++ L
Sbjct: 187 KYAKKHSEENG-ASITRDLERIKKYCTVVRVLAHTQIRKTPL------------------ 227
Query: 229 KTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 288
+QKKAHLMEIQ+NGGSVA+K+ +AR E+PI + +F +DE
Sbjct: 228 ------------------KQKKAHLMEIQVNGGSVAEKVDFARNLFEKPIEIDTIFEKDE 269
Query: 289 MIDCIGVTKGKGFKG 303
MID I VTKG GF+G
Sbjct: 270 MIDVIAVTKGHGFQG 284
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVA+K+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 228 KQKKAHLMEIQVNGGSVAEKVDFARNLFEKPIEIDTIFEKDEMIDVIAVTKGHGFQGVTS 287
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 288 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKG 344
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 285 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTS---CNHKVFRI 341
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITP+GGF YGEV NDF+++KG G KKRV+TLRK
Sbjct: 342 GKGSDEANASTDFDVSKKQITPLGGFVRYGEVKNDFILLKGSVPGVKKRVMTLRK 396
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
+ D IK C RV+ +++ +QKKAHLMEIQ+NGGSVA+K+ +AR
Sbjct: 198 ASITRDLERIKKYCT--VVRVLAHTQIRKTPLKQKKAHLMEIQVNGGSVAEKVDFARNLF 255
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
E+PI + +F +DEMID I VTKG GF+
Sbjct: 256 EKPIEIDTIFEKDEMIDVIAVTKGHGFQ 283
>gi|323455903|gb|EGB11771.1| hypothetical protein AURANDRAFT_36266 [Aureococcus anophagefferens]
Length = 393
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/267 (53%), Positives = 184/267 (68%), Gaps = 38/267 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG++GF PKKR+ H G+V+ FPKDD +KP HLTAF+ YKAGMTH+VR+ D
Sbjct: 2 SHRKFEAPRHGNLGFLPKKRTRHHHGRVRSFPKDDASKPCHLTAFMAYKAGMTHVVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVEAVT+LE PPMV+VG++GYVETP GLRS TVWA LS+E +RRFYKN
Sbjct: 62 RPGSKVHKKEIVEAVTVLEAPPMVVVGLVGYVETPRGLRSLATVWAAFLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQ-DKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KA TK + K+ G+K + ++L ++ KYC V+RVIAHT
Sbjct: 122 WYKSKRKAMTKYAAKYSASDGGEKDVDRELERIKKYCSVVRVIAHT-------------- 167
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQ 276
Q+K LK RQKKAH+MEIQ+NGG+ VA K+ +A+ EQ
Sbjct: 168 ----------------------QVKKLKLRQKKAHVMEIQVNGGADVAAKVDYAKGLFEQ 205
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PV VF +EMID +G T+G G +G
Sbjct: 206 EVPVDTVFNANEMIDVLGATRGHGTEG 232
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 99/122 (81%), Gaps = 1/122 (0%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 366
+K LK RQKKAH+MEIQ+NGG+ VA K+ +A+ EQ +PV VF +EMID +G T+G
Sbjct: 169 VKKLKLRQKKAHVMEIQVNGGADVAAKVDYAKGLFEQEVPVDTVFNANEMIDVLGATRGH 228
Query: 367 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
G +GV +RW +LPRKTH+GLRKVACIGAWHPSRV FTVAR+GQ GYHHRTE+NKKIYR
Sbjct: 229 GTEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPSRVSFTVARSGQNGYHHRTEMNKKIYR 288
Query: 427 MG 428
+G
Sbjct: 289 IG 290
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 107/156 (68%), Gaps = 10/156 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V +RW +LPRKTH+GLRKVACIGAWHPSRV FTVAR+GQ GYHHRTE+ K
Sbjct: 229 GTEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPSRVSFTVARSGQNGYHHRTEM----NK 284
Query: 496 YLSMVIKN----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ + K+ +AST+ DLTEKSITPMGGFPHYGEVN D++M+KGC +G KKR +TLR+
Sbjct: 285 KIYRIGKSGDAKSASTEADLTEKSITPMGGFPHYGEVNEDWIMVKGCVVGSKKRCLTLRQ 344
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
L K+AHL E+ L + K R ++
Sbjct: 345 S--LIAHSKRAHLEEVNLKFIDTSSKFGHGRFQTDE 378
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHL 585
+V+ + IK C RVI ++K LK RQKKAH+MEIQ+NGG+ VA K+ +A+
Sbjct: 146 DVDRELERIKKYC--SVVRVIAHTQVKKLKLRQKKAHVMEIQVNGGADVAAKVDYAKGLF 203
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
EQ +PV VF +EMID +G T+G G + V
Sbjct: 204 EQEVPVDTVFNANEMIDVLGATRGHGTEGVV 234
>gi|297837293|ref|XP_002886528.1| ARP2/RPL3B [Arabidopsis lyrata subsp. lyrata]
gi|297332369|gb|EFH62787.1| ARP2/RPL3B [Arabidopsis lyrata subsp. lyrata]
Length = 390
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 188/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDDPTKP LT+F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GYV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLSTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SKK + GKK I L KM KYC VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTKYSKKHETDEGKKDIQSQLEKMKKYCTVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHL EIQ+NGG +A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +F +DEMID IGVTKGKG++G
Sbjct: 207 PVDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+YR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRV 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 107/161 (66%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++A T+YD TEK ITPMGGFPHYG V D+LMIKG C+GPKKRV
Sbjct: 281 -MNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGGCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ LLK+ + A EI + ++ K R Q
Sbjct: 340 VTLRQT-LLKQTSRVA-TEEINIKFIDMSSKFGHGRFQTSQ 378
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|224120106|ref|XP_002331138.1| predicted protein [Populus trichocarpa]
gi|222872866|gb|EEF09997.1| predicted protein [Populus trichocarpa]
Length = 389
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/265 (58%), Positives = 188/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGK K FPKDDPTKP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKAKSFPKDDPTKPCRLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GYV TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVNTPGGLRSLSTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK KK++ + GKK I L K+ KYC VIRV+ HTQ ++
Sbjct: 122 WCKSKKKAFTKYCKKYESEDGKKDIQAQLEKLKKYCTVIRVLVHTQIRK----------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
MK LK QKKAHLMEIQ+NGG VA K+ +A E+ I
Sbjct: 171 ----------------------MKGLK--QKKAHLMEIQVNGGDVAKKVDFAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +F +DEMID IGVTKGKG++G
Sbjct: 207 PIDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 100/121 (82%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG VA K+ +A E+ IP+ +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGDVAKKVDFAYSFFEKQIPIDAIFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 108/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY-LSMVIKNN--ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y L + + A T+YD TEK ITP+GGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -LNKKIYKLGKCGQESHCAVTEYDRTEKDITPIGGFPHYGVVKEDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A + EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRVA-MEEIKLKFIDTSSKFGHGR 373
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG VA K+ +A E+ IP+ +F +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGDVAKKVDFAYSFFEKQIPIDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|302697183|ref|XP_003038270.1| 60S ribosomal protein L3 [Schizophyllum commune H4-8]
gi|300111967|gb|EFJ03368.1| hypothetical protein SCHCODRAFT_80517 [Schizophyllum commune H4-8]
Length = 421
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/267 (55%), Positives = 190/267 (71%), Gaps = 37/267 (13%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
K ++ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTAF+GYKAGMTH+VR+
Sbjct: 33 KTPQDEYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAFMGYKAGMTHVVRD 92
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
DRPGSK++K+E+VEAVTI+ETPP+++VGV+GYVETP GLR+ TVWA HLS E RRRFY
Sbjct: 93 LDRPGSKMHKREVVEAVTIVETPPVMVVGVVGYVETPRGLRALTTVWASHLSDEVRRRFY 152
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWY+S++KAFT+ +KK + G K I+++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 153 KNWYRSKKKAFTRYAKKASENDG-KLISRELERIRKYCTVVRVLAHTQIRKTGLS----- 206
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
QKKAHLMEIQ+NGGSVADK+ +A E+
Sbjct: 207 -------------------------------QKKAHLMEIQVNGGSVADKVEFAHGLFEK 235
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +G VF QDE +D I VTKG GF+G
Sbjct: 236 PVEIGSVFEQDECVDIIAVTKGHGFEG 262
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 103/126 (81%), Gaps = 2/126 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSVADK+ +A E+P+ +G VF QDE +D I VTKG GF+GVT R
Sbjct: 207 QKKAHLMEIQVNGGSVADKVEFAHGLFEKPVEIGSVFEQDECVDIIAVTKGHGFEGVTHR 266
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTHKGLRKVACIGAWHPS+V ++VARAGQ GYHHRTE+NKKIYR+G G +
Sbjct: 267 WGTKKLPRKTHKGLRKVACIGAWHPSKVMYSVARAGQNGYHHRTEINKKIYRVGLG--SD 324
Query: 435 DGKVSV 440
DG S
Sbjct: 325 DGNAST 330
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/114 (68%), Positives = 93/114 (81%), Gaps = 4/114 (3%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V ++VARAGQ GYHHRTE + KK Y
Sbjct: 263 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMYSVARAGQNGYHHRTE--INKKIYRVG 320
Query: 500 VIKN--NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ + NAST++D+T+K+ITPMGGFPHYG V ND+LM+KG G KKR+IT+RK
Sbjct: 321 LGSDDGNASTEHDITKKAITPMGGFPHYGIVKNDYLMLKGSIPGTKKRIITIRK 374
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGSVADK+ +A E+P+ +G VF QDE +D I
Sbjct: 193 RVLAHTQIRKTGLSQKKAHLMEIQVNGGSVADKVEFAHGLFEKPVEIGSVFEQDECVDII 252
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 253 AVTKGHGFEGVTH 265
>gi|281204054|gb|EFA78250.1| 60S ribosomal protein L3 [Polysphondylium pallidum PN500]
Length = 399
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/266 (54%), Positives = 184/266 (69%), Gaps = 39/266 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P+KR+ARH+GK+K FPKDD TKPVHLTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEAPRHGSLGFLPRKRAARHQGKIKSFPKDDRTKPVHLTAFMGYKAGMTHIVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE+VEAVTILE PPM IVG++GY+ET GLR +KTVWA+HLS E RRRFYK
Sbjct: 62 KPGSKMHKKEVVEAVTILECPPMYIVGLVGYLETAQGLRPYKTVWAQHLSNEFRRRFYKQ 121
Query: 159 WYKS-RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS FTK +KK+++ KK+I + + + C VIR IAHTQ + +L
Sbjct: 122 WYKSANHLVFTKYTKKYEND--KKSIDGAIAAIKRKCTVIRAIAHTQVHKLNLG------ 173
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKA ++EIQ+NGGS+ADK+ W ++ E+
Sbjct: 174 ------------------------------QKKAEVVEIQVNGGSIADKVNWVVENFEKT 203
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VFA++EMID IGVTKGKGF G
Sbjct: 204 VTVESVFAENEMIDIIGVTKGKGFNG 229
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 92/114 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKA ++EIQ+NGGS+ADK+ W ++ E+ + V VFA++EMID IGVTKGKGF GV R
Sbjct: 174 QKKAEVVEIQVNGGSIADKVNWVVENFEKTVTVESVFAENEMIDIIGVTKGKGFNGVIKR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W +KLPRKTHKGLRKVACIGAWHPSRV V RAGQ GYHHR E NKKIYR+G
Sbjct: 234 WGVRKLPRKTHKGLRKVACIGAWHPSRVSTAVPRAGQLGYHHRVETNKKIYRIG 287
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V RW +KLPRKTHKGLRKVACIGAWHPSRV V RAGQ GYHHR E
Sbjct: 220 GVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTAVPRAGQLGYHHRVET 279
Query: 490 F-----LCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
+ K + + +T++D+T K+ITPMGGF HYG V ++FLMIKGC GP+K
Sbjct: 280 NKKIYRIGKAQPATGTSIPTGATEFDITHKTITPMGGFVHYGVVKHEFLMIKGCVTGPRK 339
Query: 545 RVITLRK 551
RV+TLRK
Sbjct: 340 RVLTLRK 346
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 530 NDFLMIKGCCMGPKKRVITLR-----KMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 584
ND I G K++ +R ++ L QKKA ++EIQ+NGGS+ADK+ W ++
Sbjct: 140 NDKKSIDGAIAAIKRKCTVIRAIAHTQVHKLNLGQKKAEVVEIQVNGGSIADKVNWVVEN 199
Query: 585 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
E+ + V VFA++EMID IGVTKGKGF +
Sbjct: 200 FEKTVTVESVFAENEMIDIIGVTKGKGFNGVI 231
>gi|225684621|gb|EEH22905.1| 60S ribosomal protein L3 [Paracoccidioides brasiliensis Pb03]
Length = 384
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/255 (55%), Positives = 179/255 (70%), Gaps = 37/255 (14%)
Query: 49 GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKE 108
GS+ F P+KRSARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ +RPG+K++KKE
Sbjct: 4 GSLAFLPRKRSARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTVVRDLERPGAKMHKKE 63
Query: 109 IVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFT 168
IVEAVTI+ETPPM+ VGV+GY+ETP GLRS TVWAEHLS E +RRFYKNWYKS++KAFT
Sbjct: 64 IVEAVTIVETPPMIAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFT 123
Query: 169 KASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVN 228
K +K + G +++++L ++ KYC V+R++AHTQ ++ L
Sbjct: 124 KYAKNHSENTGA-SVSRELERIKKYCTVVRLLAHTQIRKTPL------------------ 164
Query: 229 KTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 288
+QKKAHLME+Q+NGGS+ADK+ +A E+PI + VF QDE
Sbjct: 165 ------------------KQKKAHLMEVQVNGGSIADKVDFAHGLFEKPIQIDSVFEQDE 206
Query: 289 MIDCIGVTKGKGFKG 303
MID I VTKG GF G
Sbjct: 207 MIDVIAVTKGHGFNG 221
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGS+ADK+ +A E+PI + VF QDEMID I VTKG GF GVTS
Sbjct: 165 KQKKAHLMEVQVNGGSIADKVDFAHGLFEKPIQIDSVFEQDEMIDVIAVTKGHGFNGVTS 224
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G G
Sbjct: 225 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKIYRIGKG 281
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 222 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTS---CNHKIYRI 278
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++M+KG G KKRV+TLRK
Sbjct: 279 GKGSDEGNASTEFDVSKKQITPMGGFVRYGEVKNDYVMLKGSVPGVKKRVLTLRK 333
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 43/55 (78%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 612
+QKKAHLME+Q+NGGS+ADK+ +A E+PI + VF QDEMID I VTKG GF
Sbjct: 165 KQKKAHLMEVQVNGGSIADKVDFAHGLFEKPIQIDSVFEQDEMIDVIAVTKGHGF 219
>gi|393246426|gb|EJD53935.1| 60S ribosomal protein L3 [Auricularia delicata TFB-10046 SS5]
Length = 388
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 192/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FP+DDP KPVHLTAF+GYKAGMTH+VR+ +
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPRDDPKKPVHLTAFMGYKAGMTHVVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVEAVTI+ETPP+V+VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMHKKEIVEAVTIVETPPLVVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K+++++L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYRSKKKAFTRYAKKSAED-GGKSVSRELERIRKYATVVRVLAHTQIRKTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGS+ADK+ +A E+ +
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSIADKVEFAHGLFEKTV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDE+ID I VTKG GF+G
Sbjct: 205 DINAVFEQDEVIDIIAVTKGHGFEG 229
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ +A E+ + + VF QDE+ID I VTKG GF+GVT
Sbjct: 173 KQKKAHLMEIQVNGGSIADKVEFAHGLFEKTVDINAVFEQDEVIDIIAVTKGHGFEGVTH 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTE+NKKIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTEINKKIYRIGKG 289
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 100/134 (74%), Gaps = 10/134 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTE+ K +
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTEI----NKKIYR 285
Query: 500 VIKN----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ K NAST+ D+T+K+ITPMGGFPHYG V NDF+M+KG G KKR+ITLRK ++
Sbjct: 286 IGKGDDAANASTEADVTKKAITPMGGFPHYGIVKNDFVMLKGSIPGTKKRIITLRKSLMV 345
Query: 556 KKRQKKAHLMEIQL 569
++ L ++QL
Sbjct: 346 HTSRRD--LEKVQL 357
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ADK+ +A E+ + + VF QDE+ID I
Sbjct: 160 RVLAHTQIRKTGLKQKKAHLMEIQVNGGSIADKVEFAHGLFEKTVDINAVFEQDEVIDII 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|358365675|dbj|GAA82297.1| 60S ribosomal protein L3 [Aspergillus kawachii IFO 4308]
Length = 389
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 140/254 (55%), Positives = 180/254 (70%), Gaps = 37/254 (14%)
Query: 50 SMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEI 109
S+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ DRPG+K++KKE+
Sbjct: 10 SLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTVVRDLDRPGAKMHKKEV 69
Query: 110 VEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTK 169
VEA T++ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKNWYKS++KAFTK
Sbjct: 70 VEAATVIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTK 129
Query: 170 ASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNK 229
+KK ++ G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 130 YAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQVRKTPL------------------- 169
Query: 230 TQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEM 289
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEM
Sbjct: 170 -----------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEM 212
Query: 290 IDCIGVTKGKGFKG 303
ID I VTKG GF+G
Sbjct: 213 IDVIAVTKGHGFQG 226
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/117 (72%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 170 KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 229
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 230 RWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQMGYHHRTSCNHKVFRVGKG 286
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 90/115 (78%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ GYHHRT C K +
Sbjct: 227 VTSRWGTKKLPRKTHKGLRKVACIGAWHPNHVQWTVARAGQMGYHHRTS---CNHKVFRV 283
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF HYGEV NDF+++KG G KKRV+TLRK
Sbjct: 284 GKGSDEGNASTDFDISKKQITPMGGFVHYGEVKNDFVLLKGSVPGVKKRVMTLRK 338
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I
Sbjct: 157 RVLAHTQVRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 216
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 217 AVTKGHGFQ 225
>gi|300121321|emb|CBK21701.2| unnamed protein product [Blastocystis hominis]
gi|300123206|emb|CBK24479.2| unnamed protein product [Blastocystis hominis]
gi|300176312|emb|CBK23623.2| unnamed protein product [Blastocystis hominis]
gi|300176758|emb|CBK25327.2| unnamed protein product [Blastocystis hominis]
Length = 387
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 179/265 (67%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PRHG MGF P+KR +RG V+ FPKD + HLTAF+GYKAGMTHIVR D
Sbjct: 2 SHRKYECPRHGHMGFLPRKRCTHNRGHVRSFPKDKADQKPHLTAFMGYKAGMTHIVRVLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVTILETPPMV+VG++GYVETP GLR+ TV+AEHL C+RRFYKN
Sbjct: 62 RPGSKAHKQEIVEAVTILETPPMVVVGIVGYVETPRGLRTLTTVFAEHLDDSCKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY S++KAFTK + + GK+ + Q L+K+ YC+V+RV+AHTQ Q+
Sbjct: 122 WYNSKKKAFTKYAARMATDEGKEAMEQKLKKIVDYCQVVRVLAHTQIQK----------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
LK QKKAHLMEIQ+NGG++ +K+A+A+ LE+ +
Sbjct: 171 -------------------------LKIGQKKAHLMEIQVNGGNMEEKVAFAKSLLEKEV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF EMID IGVTKGKGF+G
Sbjct: 206 KVSDVFEPSEMIDTIGVTKGKGFEG 230
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 101/120 (84%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
LK QKKAHLMEIQ+NGG++ +K+A+A+ LE+ + V VF EMID IGVTKGKGF+G
Sbjct: 171 LKIGQKKAHLMEIQVNGGNMEEKVAFAKSLLEKEVKVSDVFEPSEMIDTIGVTKGKGFEG 230
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
VT+RW T +LPRKTH+GLRKVACIGAWHPSRV FTV RAGQ GYHHRT++NKKIYR+GA
Sbjct: 231 VTTRWGTTRLPRKTHRGLRKVACIGAWHPSRVHFTVPRAGQNGYHHRTDVNKKIYRIGAA 290
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 94/122 (77%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW T +LPRKTH+GLRKVACIGAWHPSRV FTV RAGQ GYHHRT++
Sbjct: 221 GVTKGKGFEGVTTRWGTTRLPRKTHRGLRKVACIGAWHPSRVHFTVPRAGQNGYHHRTDV 280
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + +AST+ DLTEKSITPMGGFPHYGEVNND++M+KG MG KKRVITL
Sbjct: 281 NKKIYRIGAAGDAKSASTEADLTEKSITPMGGFPHYGEVNNDWIMVKGGVMGSKKRVITL 340
Query: 550 RK 551
RK
Sbjct: 341 RK 342
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ LK QKKAHLMEIQ+NGG++ +K+A+A+ LE+ + V VF EMID I
Sbjct: 161 RVLAHTQIQKLKIGQKKAHLMEIQVNGGNMEEKVAFAKSLLEKEVKVSDVFEPSEMIDTI 220
Query: 605 GVTKGKGFK 613
GVTKGKGF+
Sbjct: 221 GVTKGKGFE 229
>gi|429329033|gb|AFZ80792.1| 60S ribosomal protein L3, putative [Babesia equi]
Length = 388
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 139/265 (52%), Positives = 181/265 (68%), Gaps = 40/265 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR HRGKV+ FPKDDP+ P H TAF+GYKAGMTH+V E D
Sbjct: 2 SHRKFERPRSGSLGFLPRKRCKMHRGKVRSFPKDDPSLPPHFTAFMGYKAGMTHVVTEVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKE+VEAVTI+ETPPMV+VG++GY+ETP GL+ TVWA HLS ECRRRFYKN
Sbjct: 62 RPGSKLHKKEVVEAVTIVETPPMVVVGLVGYIETPKGLKVLTTVWAAHLSDECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+Q+ GK + +++ ++ Y V+R I HTQ + S+
Sbjct: 122 WYKSKKKAFTKYTKKFQE--GK--VDKEISRIKNYATVVRAICHTQPSKLSIS------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+KAH+ME+Q+NGGS+ADK+ + E+PI
Sbjct: 171 -----------------------------LRKAHIMEVQVNGGSIADKVDFVTGLFEKPI 201
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+++EM+D +GVTKG G KG
Sbjct: 202 PVSSVFSENEMLDTVGVTKGHGTKG 226
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 97/121 (80%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
+KAH+ME+Q+NGGS+ADK+ + E+PIPV VF+++EM+D +GVTKG G KGV SR+
Sbjct: 172 RKAHIMEVQVNGGSIADKVDFVTGLFEKPIPVSSVFSENEMLDTVGVTKGHGTKGVVSRY 231
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE NKKIYR+G G + ++
Sbjct: 232 GVTRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTERNKKIYRIGLGTNPRN 291
Query: 436 G 436
Sbjct: 292 A 292
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 99/143 (69%), Gaps = 6/143 (4%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G V SR+ +LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE
Sbjct: 216 VGVTKGHGTKGVVSRYGVTRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTE 275
Query: 489 LFLCKKKYLSMVIKN--NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK Y + N NASTD DLTEK ITPMGGFPHYG V DFLM+KGC +GPKKRV
Sbjct: 276 R--NKKIYRIGLGTNPRNASTDADLTEKKITPMGGFPHYGVVKEDFLMLKGCIVGPKKRV 333
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L + +A L E+ L
Sbjct: 334 ITLRKT--LVPQVSRAALAEVSL 354
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 11/90 (12%)
Query: 528 VNNDFLMIKGCC-MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ N +++ C P K I+LRK AH+ME+Q+NGGS+ADK+ + E
Sbjct: 149 IKNYATVVRAICHTQPSKLSISLRK----------AHIMEVQVNGGSIADKVDFVTGLFE 198
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+PIPV VF+++EM+D +GVTKG G K V
Sbjct: 199 KPIPVSSVFSENEMLDTVGVTKGHGTKGVV 228
>gi|37909690|gb|AAP23996.1| ribosomal protein L3B [Oryza sativa Indica Group]
Length = 345
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/255 (56%), Positives = 179/255 (70%), Gaps = 35/255 (13%)
Query: 49 GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKE 108
GS+GF P+KRS+RHRGKVK FPKDD KP HLT+F+GYKAGMTHIVRE ++PGSK++KKE
Sbjct: 1 GSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKE 60
Query: 109 IVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFT 168
EAVTI+ETPP+V+VG++ YV+TP GLRS +VWA+HLS+E RRRFYKNW KS++KAFT
Sbjct: 61 TCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFT 120
Query: 169 KASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVN 228
K + K+ GKK I L KM KY V+RVI HTQ +
Sbjct: 121 KYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIR---------------------- 158
Query: 229 KTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 288
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DE
Sbjct: 159 -----------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDE 205
Query: 289 MIDCIGVTKGKGFKG 303
MID IGVTKGKG++G
Sbjct: 206 MIDIIGVTKGKGYEG 220
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMID IGVTKGKG
Sbjct: 160 MKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKG 217
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 218 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 277
Query: 428 G 428
G
Sbjct: 278 G 278
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 99/136 (72%), Gaps = 6/136 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 211 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 269
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y S + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 270 -MNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 328
Query: 547 ITLRKMKLLKKRQKKA 562
+TLR+ LLK+ + A
Sbjct: 329 VTLRQ-SLLKQTSRLA 343
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMI
Sbjct: 150 RVIVHTQIRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMI 207
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 208 DIIGVTKGKGYEGVV 222
>gi|224095129|ref|XP_002195484.1| PREDICTED: 60S ribosomal protein L3-like [Taeniopygia guttata]
Length = 177
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 129/166 (77%), Positives = 152/166 (91%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYV+TP GLRSFKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIIETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ 204
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRV+AHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFNSMKKYCQVIRVMAHTQ 167
>gi|15220533|ref|NP_176352.1| 60S ribosomal protein L3-2 [Arabidopsis thaliana]
gi|21542436|sp|P22738.4|RL32_ARATH RecName: Full=60S ribosomal protein L3-2
gi|4585874|gb|AAD25547.1|AC005850_4 60s ribosomal protein L3 [Arabidopsis thaliana]
gi|28392966|gb|AAO41918.1| putative ribosomal protein [Arabidopsis thaliana]
gi|28973595|gb|AAO64122.1| putative ribosomal protein [Arabidopsis thaliana]
gi|332195738|gb|AEE33859.1| 60S ribosomal protein L3-2 [Arabidopsis thaliana]
Length = 390
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 190/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKDDPTKP LT+F+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GYV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT+ SKK + + GKK I L KM KYC VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHL EIQ+NGG +A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +F +DEMID IGVTKGKG++G
Sbjct: 207 PVDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+YR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRV 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 108/153 (70%), Gaps = 14/153 (9%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++A T+YD TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL-------NGG 572
+TLR+ LLK+ + A + EI+L NGG
Sbjct: 340 VTLRQT-LLKQTSRLA-MEEIKLKFIDAASNGG 370
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|160550199|gb|ABX44804.1| putative 60S ribosomal protein RPL3 [Flustra foliacea]
Length = 185
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/220 (62%), Positives = 164/220 (74%), Gaps = 36/220 (16%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG++GF PKKRS RHRGKVK FP DDP KPVHLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFSAPRHGNLGFIPKKRSKRHRGKVKSFPSDDPRKPVHLTAFLGYKAGMTHIVREVN 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKEIVEAVTI+ETPP+V+VGV GY+ETP GLR+ T+WAEHLS+ECRRRFYKN
Sbjct: 62 RPGSKVNKKEIVEAVTIIETPPLVVVGVTGYIETPRGLRTLGTIWAEHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY +++KAFTK +KKWQD+ GKK I +D K++K+C +IRV+ HT
Sbjct: 122 WYHAKKKAFTKYAKKWQDEDGKKVIERDFNKLSKHCTIIRVLCHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQL 258
QMKLL +RQKKA+LMEIQ+
Sbjct: 167 ---------------------QMKLLNQRQKKANLMEIQV 185
>gi|357443613|ref|XP_003592084.1| L3 Ribosomal protein [Medicago truncatula]
gi|355481132|gb|AES62335.1| L3 Ribosomal protein [Medicago truncatula]
Length = 455
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/270 (57%), Positives = 192/270 (71%), Gaps = 35/270 (12%)
Query: 34 RVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHI 93
R KK SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDPTKP LTAF+GYKAGMTHI
Sbjct: 63 RKKKMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHI 122
Query: 94 VREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRR 153
VRE ++PGSK++KKE E VTI+ETPPMV+VGV+GYV+TP GLR+ TVW +HLS+E +R
Sbjct: 123 VREVEKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKR 182
Query: 154 RFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQN 213
RFYKNW KS++KAF+K SK+++ GKK I L K+ KY VIRV+AHTQ ++
Sbjct: 183 RFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRK------ 236
Query: 214 QQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 273
MK LK QKKAH+MEIQ+NGG++A K+ +A
Sbjct: 237 ---------------------------MKGLK--QKKAHIMEIQVNGGTIAQKVDFAYSF 267
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+ +P+ VF +DEMID IGVTKGKG++G
Sbjct: 268 FEKQVPIDAVFQKDEMIDIIGVTKGKGYEG 297
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/126 (65%), Positives = 102/126 (80%), Gaps = 1/126 (0%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTKGKG++GV +
Sbjct: 241 KQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVT 300
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-AGIH 432
RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++G G
Sbjct: 301 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKVGEE 360
Query: 433 TKDGKV 438
T D +
Sbjct: 361 THDAQT 366
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/156 (58%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 288 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 346
Query: 490 FLCKKKY-LSMVIK--NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y L V + ++A T++D TEK ITPMGGFPHYG V DFLMIKG C+GPKKRV
Sbjct: 347 -LNKKIYKLGKVGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDFLMIKGGCVGPKKRV 405
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
ITLR+ LLK+ + A L +I+L + K R
Sbjct: 406 ITLRQ-SLLKQTSRLA-LEDIKLKFIDTSSKFGHGR 439
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 234 IRKMKGLK--QKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTK 291
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 292 GKGYEGVV 299
>gi|168026163|ref|XP_001765602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683240|gb|EDQ69652.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 139/265 (52%), Positives = 184/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+AR RGKVK FPKDD +K HLT+F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARSRGKVKTFPKDDASKAPHLTSFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPM++VG++ Y++TP GLRS TVWA+HLS E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIVETPPMIVVGLVAYIKTPRGLRSLNTVWAQHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAF+ SK+++ + GKK + +L +M KY VIRV+AHTQ +
Sbjct: 122 WSKSKKKAFSNYSKRYESEEGKKDVESELERMKKYASVIRVLAHTQVR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KL +QKKAHL EIQ+NGG++A+K+ + + E+ +
Sbjct: 170 -----------------------KLKGIKQKKAHLAEIQVNGGNIAEKVDFGFKLFEKWV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF +DEMID IGVT+G G++G
Sbjct: 207 SVDAVFRKDEMIDIIGVTRGHGYEG 231
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 98/120 (81%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHL EIQ+NGG++A+K+ + + E+ + V VF +DEMID IGVT+G G+
Sbjct: 170 KLKGIKQKKAHLAEIQVNGGNIAEKVDFGFKLFEKWVSVDAVFRKDEMIDIIGVTRGHGY 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKVG 289
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTRGHGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVIKN----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ KK Y ++ AST++D+TEK ITPMGGF HYG V D+LM+KG MGPKKR
Sbjct: 281 -MNKKVYKVGKAEDKQSFGASTEFDVTEKEITPMGGFAHYGIVREDYLMLKGGVMGPKKR 339
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
VITLR+ L K+ ++ L +I+L + K R
Sbjct: 340 VITLRQS--LYKQVSRSALEDIKLKFIDTSSKFGHGR 374
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K +K QKKAHL EIQ+NGG++A+K+ + + E+ + V VF +DEMID IGVT+
Sbjct: 168 VRKLKGIK--QKKAHLAEIQVNGGNIAEKVDFGFKLFEKWVSVDAVFRKDEMIDIIGVTR 225
Query: 609 GKGFKECV 616
G G++ V
Sbjct: 226 GHGYEGVV 233
>gi|806279|gb|AAA66161.1| ribosomal protein [Arabidopsis thaliana]
Length = 390
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 190/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKDDPTKP LT+F+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GYV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT+ SKK + + GKK I L KM KYC VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK +K QKKAHL EIQ+NGG +A K+ +A E+ +
Sbjct: 170 ---------------------KMKGVK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +F +DEMID IGVTKGKG++G
Sbjct: 207 PVDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTKGKG++GV +
Sbjct: 175 KQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+YR+G
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG 289
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 108/153 (70%), Gaps = 14/153 (9%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++A T+YD TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL-------NGG 572
+TLR+ LLK+ + A + EI+L NGG
Sbjct: 340 VTLRQT-LLKQTSRLA-MEEIKLKFIDAASNGG 370
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK +K QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 168 IRKMKGVK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|255570998|ref|XP_002526450.1| 60S ribosomal protein L3, putative [Ricinus communis]
gi|223534230|gb|EEF35945.1| 60S ribosomal protein L3, putative [Ricinus communis]
Length = 389
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/265 (58%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++R RGKVK FPKDDP KP LTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRQRGKVKAFPKDDPKKPCRLTAFLGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GYV+TP GLRS TVWA+HLS++ +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLNTVWAQHLSEDVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SKK++ + GKK L KM KYC VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKKFESEEGKKDTQVQLEKMKKYCTVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG VA K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQVNGGDVAQKVDFAYSFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/136 (63%), Positives = 104/136 (76%), Gaps = 2/136 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG VA K+ +A E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQVNGGDVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKL 288
Query: 428 GAGIHTKDGKVSVTSR 443
G H ++ R
Sbjct: 289 GKAGHESHSAITEYDR 304
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 108/163 (66%), Gaps = 11/163 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 281
Query: 490 F-----LCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
L K + S ++A T+YD TEK ITP+GGFPHYG V DFLMIKGCC+GPKK
Sbjct: 282 NKKIYKLGKAGHES----HSAITEYDRTEKDITPIGGFPHYGIVKEDFLMIKGCCVGPKK 337
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
RV+TLR+ LL + + A + EI++ + K R Q
Sbjct: 338 RVVTLRQ-SLLNQTSRVA-MEEIKIKFIDTSSKFGHGRFQTAQ 378
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG VA K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLMEIQVNGGDVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|325184995|emb|CCA19486.1| 60S ribosomal protein L3 putative [Albugo laibachii Nc14]
Length = 388
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 143/264 (54%), Positives = 183/264 (69%), Gaps = 39/264 (14%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRKF APRHG +GF PKKR+ H+G+++ FP+DD K HLTAF+ +KAGMTHI+RE ++
Sbjct: 3 HRKFEAPRHGHLGFLPKKRTKHHQGRIRKFPRDDCNKAPHLTAFLAHKAGMTHIMREVNQ 62
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
PGSK++KKEIVEAV+ILETPPMVIVGV+GY+ETP GLRS TVWAEHLS+E +RRFYKNW
Sbjct: 63 PGSKLHKKEIVEAVSILETPPMVIVGVVGYLETPRGLRSLTTVWAEHLSEEVKRRFYKNW 122
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
YKS++KAFTK +KK+ + I ++L ++ KYC+V+RV+AH
Sbjct: 123 YKSKRKAFTKYAKKYAN---SSDIERELNRIKKYCQVVRVLAH----------------- 162
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
DQP K L R KKAH+MEIQ+NGGSV DK+ +A+ E+ +P
Sbjct: 163 DQP-------------------KKLHLRIKKAHIMEIQINGGSVPDKVDFAKSLFEKQVP 203
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDE+ID G TKG G +G
Sbjct: 204 VSAVFTQDELIDICGATKGHGIEG 227
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 96/122 (78%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
K L R KKAH+MEIQ+NGGSV DK+ +A+ E+ +PV VF QDE+ID G TKG G
Sbjct: 166 KKLHLRIKKAHIMEIQINGGSVPDKVDFAKSLFEKQVPVSAVFTQDELIDICGATKGHGI 225
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+GV +RW +LPRKTH+GLRKVACIGAWHPSRV +TV RAGQ GYHHRTE+NKKIYR+G
Sbjct: 226 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPSRVSYTVPRAGQHGYHHRTEINKKIYRIG 285
Query: 429 AG 430
A
Sbjct: 286 AA 287
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/150 (57%), Positives = 100/150 (66%), Gaps = 8/150 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V +RW +LPRKTH+GLRKVACIGAWHPSRV +TV RAGQ GYHHRTE+ KK
Sbjct: 224 GIEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPSRVSYTVPRAGQHGYHHRTEI---NKK 280
Query: 496 YLSMVIKNNA---STDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ +A T+ DLTEKSITPMGGFPHYG +N D+LMIKG +G KKR ITLRK
Sbjct: 281 IYRIGAAGDAKSCQTEQDLTEKSITPMGGFPHYGIINEDWLMIKGAVVGVKKRPITLRKS 340
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
LL K+A L EI+L + K R
Sbjct: 341 LLL--HTKRAALEEIKLKFIDTSSKFGHGR 368
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 522 FPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWA 581
+ + ++ + IK C RV+ + K L R KKAH+MEIQ+NGGSV DK+ +A
Sbjct: 137 YANSSDIERELNRIKKYCQ--VVRVLAHDQPKKLHLRIKKAHIMEIQINGGSVPDKVDFA 194
Query: 582 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+ E+ +PV VF QDE+ID G TKG G + V
Sbjct: 195 KSLFEKQVPVSAVFTQDELIDICGATKGHGIEGVV 229
>gi|323510289|dbj|BAJ78038.1| cgd5_1580 [Cryptosporidium parvum]
Length = 388
Score = 285 bits (729), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 134/265 (50%), Positives = 184/265 (69%), Gaps = 39/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR +R+RGKVK FPKDD +P HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFERPRSGSLGFLPRKRCSRNRGKVKAFPKDDSNQPPHLTAFMGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTI+ETPPM+ VG +GY+ETP+GLR+ TV+A +LS+EC+RRFYKN
Sbjct: 62 KPGSKLNKKEVVEAVTIVETPPMICVGFVGYIETPNGLRALTTVFAGYLSEECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+Y+S++KAFTK ++ + + + + ++ + +YC VIR + HTQ + L+
Sbjct: 122 YYRSKRKAFTKYARNYAE---NQRMEAEIARCKQYCTVIRALCHTQVSKTGLN------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+KKA +MEIQ+NGG+V+DKI + + EQPI
Sbjct: 172 -----------------------------KKKADIMEIQVNGGTVSDKIDFCVRCFEQPI 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +F ++EMID IG++KGKG+KG
Sbjct: 203 PVSTIFNENEMIDIIGISKGKGYKG 227
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 98/125 (78%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KKA +MEIQ+NGG+V+DKI + + EQPIPV +F ++EMID IG++KGKG+KGV SR
Sbjct: 172 KKKADIMEIQVNGGTVSDKIDFCVRCFEQPIPVSTIFNENEMIDIIGISKGKGYKGVISR 231
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W KLPRKT +G+RKV+CIGAWHP+RVQF V RAGQKGY RTE NKKIYR+G G +
Sbjct: 232 WGVTKLPRKTRRGVRKVSCIGAWHPARVQFQVPRAGQKGYGQRTETNKKIYRIGRGDDPR 291
Query: 435 DGKVS 439
+ S
Sbjct: 292 NASTS 296
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 88/125 (70%), Gaps = 6/125 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G V SRW KLPRKT +G+RKV+CIGAWHP+RVQF V RAGQKGY RTE
Sbjct: 218 GISKGKGYKGVISRWGVTKLPRKTRRGVRKVSCIGAWHPARVQFQVPRAGQKGYGQRTET 277
Query: 490 FLCKKKYLSMVIKN---NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK + + NAST DLTEK+ITPMGGFP YG VN DFLM+KGC +G KKR+
Sbjct: 278 ---NKKIYRIGRGDDPRNASTSADLTEKTITPMGGFPRYGVVNQDFLMLKGCTVGCKKRL 334
Query: 547 ITLRK 551
+TLRK
Sbjct: 335 LTLRK 339
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+KKA +MEIQ+NGG+V+DKI + + EQPIPV +F ++EMID IG++KGKG+K
Sbjct: 172 KKKADIMEIQVNGGTVSDKIDFCVRCFEQPIPVSTIFNENEMIDIIGISKGKGYK 226
>gi|401882459|gb|EJT46717.1| large subunit ribosomal protein L3 [Trichosporon asahii var. asahii
CBS 2479]
Length = 381
Score = 285 bits (729), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 225/398 (56%), Gaps = 104/398 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PR GS+ F P+KR+A+HRG +K FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEEPRSGSLAFLPRKRAAKHRGHIKSFPKDDPKKPVHLTAMLGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPMVIVGV+GYVETP GLR+ TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVVETPPMVIVGVVGYVETPRGLRALTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G ++A++L ++ KY V+RV+AHTQ Q L
Sbjct: 122 WYRSKKKAFTRYAKKHSENNG-ASVARELERIKKYATVVRVLAHTQLSQTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGS+ADK+ +A+ + E+
Sbjct: 173 ----------------------------AQKKAHLSEIQVNGGSIADKVEFAKANFEKTF 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
V VF Q+E ID I VTKG G+ G +I+ + K +K H
Sbjct: 205 DVKSVFEQNECIDVIAVTKGHGYSG-VISRWGVTKLPRKTH------------------- 244
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+ L + + CIG WH K+
Sbjct: 245 RGLRK-------------VACIGA------------WHPSKV------------------ 261
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
F+VAR+GQ GYH RT +N KIYR+ G + G
Sbjct: 262 ----MFSVARSGQDGYHRRTTINHKIYRIDNGTNEGSG 295
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V SRW KLPRKTH+GLRKVACIGAWHPS+V F+VAR+GQ GYH RT + +
Sbjct: 226 GYSGVISRWGVTKLPRKTHRGLRKVACIGAWHPSKVMFSVARSGQDGYHRRTTINHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ + + ST++DLT+KSI P+GG+ HY + NDF+M+KG G KKRVITLRK L
Sbjct: 286 IDNGTNEGSGSTEFDLTKKSINPVGGWSHYPLIRNDFVMLKGSIPGVKKRVITLRKA--L 343
Query: 556 KKRQKKAHLMEIQL 569
+ + HL EI L
Sbjct: 344 RVHTSRTHLEEITL 357
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
QKKAHL EIQ+NGGS+ADK+ +A+ + E+ V VF Q+E ID I VTKG G+ +
Sbjct: 174 QKKAHLSEIQVNGGSIADKVEFAKANFEKTFDVKSVFEQNECIDVIAVTKGHGYSGVI 231
>gi|444724683|gb|ELW65282.1| 60S ribosomal protein L3 [Tupaia chinensis]
Length = 322
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 168/256 (65%), Gaps = 66/256 (25%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFS PRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIV+E +
Sbjct: 2 SHRKFSVPRHGSLGFLPQKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVQEVN 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKT+ AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTILAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
M KYC+VI VI HT
Sbjct: 122 C------------------------------MKKYCQVIHVITHT--------------- 136
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL QKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 137 ---------------------QMRLLPLCQKKAHLMEIQVNGGTVAEKLDWAREQLEQQV 175
Query: 279 PVGQVFAQDEMIDCIG 294
V QVF Q EMID IG
Sbjct: 176 SVNQVFGQVEMIDVIG 191
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 69/95 (72%), Gaps = 6/95 (6%)
Query: 481 KGYHHRTEL---FLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
KGYHHRTE+ + + YL +IKNNASTDYDL++KSI +GGF HYGEV NDF+M
Sbjct: 192 KGYHHRTEINKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINALGGFVHYGEVTNDFVM 251
Query: 535 IKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+KGC +G KKRV+TLRK L++ +++ ++++
Sbjct: 252 LKGCVVGTKKRVLTLRKFLLVQTKRRALEKIDLKF 286
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 65/131 (49%), Gaps = 51/131 (38%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL QKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ + V QVF Q EMID IG
Sbjct: 138 MRLLPLCQKKAHLMEIQVNGGTVAEKLDWAREQLEQQVSVNQVFGQVEMIDVIG------ 191
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGYHHRTE+N KIY++
Sbjct: 192 --------------------------------------------KGYHHRTEIN-KIYKI 206
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 207 GQGYLIKDGKL 217
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 47/60 (78%)
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIG 605
VIT +M+LL QKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ + V QVF Q EMID IG
Sbjct: 132 VITHTQMRLLPLCQKKAHLMEIQVNGGTVAEKLDWAREQLEQQVSVNQVFGQVEMIDVIG 191
>gi|403218316|emb|CCK72807.1| hypothetical protein KNAG_0L01880 [Kazachstania naganishii CBS
8797]
Length = 387
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 140/266 (52%), Positives = 181/266 (68%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG +GF P+KR+A RG+VK FPKDD +K V LT+F+GYKAGM+ IVR+ D
Sbjct: 2 SHRKFEAPRHGHLGFLPRKRAASIRGRVKSFPKDDKSKAVALTSFLGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++TP +V+VG++GYVETP GLRS TVWAEHLS E +R+FYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDTPAIVVVGLVGYVETPRGLRSLTTVWAEHLSDEIKRKFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSTKYAQDGTA---IERELARIKKYATVVRVLVHTQIRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAH+ EIQLNGGS++DK+ WAR+H E+
Sbjct: 172 -----------------------------SQKKAHMAEIQLNGGSISDKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF +EMID + VTKG GF+G
Sbjct: 203 VSVDSVFENNEMIDVVAVTKGHGFEG 228
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 98/125 (78%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH+ EIQLNGGS++DK+ WAR+H E+ + V VF +EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHMAEIQLNGGSISDKVDWAREHFEKTVSVDSVFENNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W T +LPRKTH+GLRKVACIGAWHP+ V ++VARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 WGTTRLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQNGYHHRTSINHKIYRVGKGEDES 292
Query: 435 DGKVS 439
+G S
Sbjct: 293 NGSTS 297
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW T +LPRKTH+GLRKVACIGAWHP+ V ++VARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTTRLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQNGYHHRTSINHKIYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
++N ST +D T+K+I PMGGF HYG+V NDF+M+KG G +KR++TLRK L
Sbjct: 289 EDESNGSTSFDRTKKTINPMGGFVHYGDVKNDFVMVKGSIPGTRKRIVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVNLKWIDTASKFGKGR 369
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAH+ EIQLNGGS++DK+ WAR+H E+ + V VF +EMID +
Sbjct: 159 RVLVHTQIRKTPLSQKKAHMAEIQLNGGSISDKVDWAREHFEKTVSVDSVFENNEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|356544202|ref|XP_003540543.1| PREDICTED: 60S ribosomal protein L3-like [Glycine max]
Length = 389
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKD+P++P LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDNPSQPCRLTAFVGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+V+VGV+GYV+TP GLR+ T+WA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTIWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SKK++ + GKK I L K+ KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKKYETEEGKKDIESQLEKLKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KL +QKKAHLMEIQ+NGG+V K+ +A E+ I
Sbjct: 170 -----------------------KLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 157/274 (57%), Gaps = 70/274 (25%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID IGVTKGKG+
Sbjct: 170 KLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTKGKGY 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY+
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYK-- 287
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
VA+A Q+ + TE
Sbjct: 288 ----------------------------------------------VAKADQESHSAITE 301
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
T+ D+T PMGGFPHYG V +D++M+KGCC+GPKKRVIT
Sbjct: 302 F---------------DRTEKDIT-----PMGGFPHYGVVKDDYIMVKGCCVGPKKRVIT 341
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
LR+ LLK+ + A L EI+L + K R
Sbjct: 342 LRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGR 373
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K LK QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID IGVTK
Sbjct: 168 IRKLKGLK--QKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|156082902|ref|XP_001608935.1| ribosomal protein L3 [Babesia bovis T2Bo]
gi|154796185|gb|EDO05367.1| ribosomal protein L3, putative [Babesia bovis]
Length = 393
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 134/265 (50%), Positives = 176/265 (66%), Gaps = 40/265 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR G++GF+PKKR RGK++ FPKDDPTKP H TAF+GYKAGMTH+ E D
Sbjct: 2 SHRKFERPRSGNLGFFPKKRCKSQRGKIRSFPKDDPTKPPHFTAFMGYKAGMTHVTHEPD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KK+ VEAVTI+ETPPM++VG++GY+ETP GLR TVWA HLS ECRRRFYKN
Sbjct: 62 KPGSKLHKKDTVEAVTIIETPPMIVVGLVGYIETPRGLRVLTTVWAGHLSDECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ + +++D+ ++ YC V+R I HTQ + L
Sbjct: 122 WYKSKKKAFTKYAKKFAE----TKMSKDISRIVNYCTVVRAICHTQPSKTPLS------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKA ++EIQ+NGG+V +K+ + + EQP+
Sbjct: 171 -----------------------------MKKAFIIEIQVNGGTVQEKVDYVTKMFEQPL 201
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFA +EM+D +GVTKG G KG
Sbjct: 202 PVNAVFASNEMVDVLGVTKGHGMKG 226
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 96/121 (79%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKA ++EIQ+NGG+V +K+ + + EQP+PV VFA +EM+D +GVTKG G KGV SR+
Sbjct: 172 KKAFIIEIQVNGGTVQEKVDYVTKMFEQPLPVNAVFASNEMVDVLGVTKGHGMKGVISRF 231
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
+LPRKTH+GLRKVACIG+WHP+RVQF V R+GQKGY HRTE NKKIYR+G G + ++
Sbjct: 232 GVTRLPRKTHRGLRKVACIGSWHPARVQFQVPRSGQKGYFHRTERNKKIYRLGLGSNPRN 291
Query: 436 G 436
Sbjct: 292 A 292
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 98/142 (69%), Gaps = 6/142 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V SR+ +LPRKTH+GLRKVACIG+WHP+RVQF V R+GQKGY HRTE
Sbjct: 217 GVTKGHGMKGVISRFGVTRLPRKTHRGLRKVACIGSWHPARVQFQVPRSGQKGYFHRTE- 275
Query: 490 FLCKKKYLSMVIKN--NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
KK Y + N NASTD DLTEK ITPMGGFPHYGEV +DFLMIKGC +G KKR I
Sbjct: 276 -RNKKIYRLGLGSNPRNASTDADLTEKQITPMGGFPHYGEVKDDFLMIKGCIVGTKKRPI 334
Query: 548 TLRKMKLLKKRQKKAHLMEIQL 569
+RK L + + L EI L
Sbjct: 335 VIRKT--LVPQVSRDALAEINL 354
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKA ++EIQ+NGG+V +K+ + + EQP+PV VFA +EM+D +GVTKG G K +
Sbjct: 172 KKAFIIEIQVNGGTVQEKVDYVTKMFEQPLPVNAVFASNEMVDVLGVTKGHGMKGVI 228
>gi|237862632|gb|ACR24941.1| ribosomal protein L3 [Lepidochitona cinerea]
Length = 351
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 150/243 (61%), Positives = 180/243 (74%), Gaps = 36/243 (14%)
Query: 61 RHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPP 120
RHRG++K FPKDDP+KPVHLTAF+GYKAGMTHIVRE DRPGSK+NKKE+VE V++LE PP
Sbjct: 1 RHRGQLKAFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEGVSVLEVPP 60
Query: 121 MVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGK 180
+V+VGV+GYV TP GLR+F T+WAEHL +ECRRRFYKNW +S++KAFTKASKKWQD+ GK
Sbjct: 61 LVVVGVVGYVATPKGLRTFNTIWAEHLGEECRRRFYKNWARSKKKAFTKASKKWQDETGK 120
Query: 181 KTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQ 240
K I +DL KM KYC V+RV+ HTQ
Sbjct: 121 KEIEKDLSKMKKYCNVVRVLCHTQT----------------------------------- 145
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
KL+ RQKKAH++EIQLNGGS+ DKI WA+ H E+ +PV +VFAQDE+ID IGVTKGKG
Sbjct: 146 -KLMNTRQKKAHIVEIQLNGGSIPDKIDWAKDHFEKTVPVQEVFAQDELIDIIGVTKGKG 204
Query: 301 FKG 303
KG
Sbjct: 205 VKG 207
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 120/130 (92%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL+ RQKKAH++EIQLNGGS+ DKI WA+ H E+ +PV +VFAQDE+ID IGVTKGKG
Sbjct: 146 KLMNTRQKKAHIVEIQLNGGSIPDKIDWAKDHFEKTVPVQEVFAQDELIDIIGVTKGKGV 205
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQ++VARAGQKGYHHRTE+NKKIYR+G
Sbjct: 206 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQYSVARAGQKGYHHRTEINKKIYRLG 265
Query: 429 AGIHTKDGKV 438
+G+HT+DGK+
Sbjct: 266 SGVHTRDGKL 275
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/140 (68%), Positives = 109/140 (77%), Gaps = 13/140 (9%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQ++VARAGQKGYHHRTE
Sbjct: 198 GVTKGKGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQYSVARAGQKGYHHRTE- 256
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YD TEK+ITP+GGFPHYGEVN D++M+KGC +
Sbjct: 257 -INKKIYRLGSGVHTRDGKLVKNNASTEYDPTEKTITPVGGFPHYGEVNQDYIMMKGCVV 315
Query: 541 GPKKRVITLRKMKL--LKKR 558
GPKKRVITLRK L KKR
Sbjct: 316 GPKKRVITLRKSLLTHFKKR 335
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ D +K C RV+ + KL+ RQKKAH++EIQLNGGS+ DKI WA+ H E
Sbjct: 122 EIEKDLSKMKKYCNVV--RVLCHTQTKLMNTRQKKAHIVEIQLNGGSIPDKIDWAKDHFE 179
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV +VFAQDE+ID IGVTKGKG K
Sbjct: 180 KTVPVQEVFAQDELIDIIGVTKGKGVK 206
>gi|34105772|gb|AAQ62077.1| ribosomal protein L3 [Triticum aestivum]
Length = 384
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 181/265 (68%), Gaps = 40/265 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FP+DD +K HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKAFPRDDQSKKCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 -----LHKKETCEAVTIVETPPIVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 116
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY V+RVIAHTQ +
Sbjct: 117 WCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR------------ 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + E+ +
Sbjct: 165 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYNFFEKEV 201
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 202 PIDAVFQKDEMIDIIGVTKGKGYEG 226
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 104/130 (80%), Gaps = 3/130 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 166 MKGLK--QKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 223
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 224 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 283
Query: 428 G-AGIHTKDG 436
G G T D
Sbjct: 284 GKVGQETHDA 293
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 217 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 275
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 276 -MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRV 334
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 335 VTLRQ-SLLKQTSRLA-LEEIKLKFVDTSSKFGHGR 368
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTK
Sbjct: 163 IRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTK 220
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 221 GKGYEGVV 228
>gi|284073158|gb|ADB77818.1| 60S ribosomal protein L3 [Entransia fimbriata]
Length = 236
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/262 (53%), Positives = 184/262 (70%), Gaps = 35/262 (13%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
KF RHGS+GF P+KRS R RGKVK FP+DDPTKP LTAF+GYKAGMTHI+R+ D+PG
Sbjct: 1 KFEHARHGSLGFLPRKRSKRIRGKVKSFPRDDPTKPPGLTAFMGYKAGMTHIMRDVDKPG 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
SK++KKE EAVTI+E PP+V+VG++GYV+TP GLRS TVWA+HLS+E RRFYKN+ K
Sbjct: 61 SKLHKKEACEAVTIIEAPPIVVVGLVGYVKTPRGLRSLVTVWAQHLSEEVIRRFYKNYAK 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
S++KAFTK K++ + GKK + + L +M KYC+VIRV+AHTQ +
Sbjct: 121 SKKKAFTKYRKQYDNPEGKKDVDKQLERMKKYCQVIRVLAHTQVK--------------- 165
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
K+ RQKKAH+MEIQ+NGGSVA+K+ + ++ E+ IP+
Sbjct: 166 --------------------KVKGIRQKKAHIMEIQVNGGSVAEKVDFGVKYFEKAIPID 205
Query: 282 QVFAQDEMIDCIGVTKGKGFKG 303
VF +DEM+D IGVT+G G++G
Sbjct: 206 AVFNKDEMVDIIGVTRGHGYEG 227
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 51/62 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
RQKKAH+MEIQ+NGGSVA+K+ + ++ E+ IP+ VF +DEM+D IGVT+G G++GV +
Sbjct: 171 RQKKAHIMEIQVNGGSVAEKVDFGVKYFEKAIPIDAVFNKDEMVDIIGVTRGHGYEGVVT 230
Query: 374 RW 375
RW
Sbjct: 231 RW 232
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 47/59 (79%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
RQKKAH+MEIQ+NGGSVA+K+ + ++ E+ IP+ VF +DEM+D IGVT+G G++ V
Sbjct: 171 RQKKAHIMEIQVNGGSVAEKVDFGVKYFEKAIPIDAVFNKDEMVDIIGVTRGHGYEGVV 229
>gi|6688812|emb|CAB65281.1| L3 Ribosomal protein [Medicago sativa subsp. x varia]
Length = 388
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDPTKP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+ETPPMV+VGV+GYV+TP GLR+ TVW +HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAF+K SK+++ GKK I L K+ KY VIRV+AHTQ ++
Sbjct: 122 WCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRK----------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ +
Sbjct: 171 ----------------------MKGLK--QKKAHIMEIQVNGGTIAQKVDFAYNFFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 105/133 (78%), Gaps = 3/133 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHIMEIQVNGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKL 288
Query: 428 G-AGIHTKDGKVS 439
G G T D +
Sbjct: 289 GKVGEETHDAQTE 301
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/143 (62%), Positives = 106/143 (74%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY-LSMVIK--NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y L V + ++A T++D TEK ITPMGGFPHYG V DFLMIKG C+GPKKRV
Sbjct: 281 -LNKKIYKLGKVGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDFLMIKGGCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLR+ LLK+ + A L +I+L
Sbjct: 340 ITLRQ-SLLKQTSRLA-LEDIKL 360
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHIMEIQVNGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|356531559|ref|XP_003534345.1| PREDICTED: 60S ribosomal protein L3-like [Glycine max]
Length = 389
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKD+P++P LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDNPSQPCGLTAFVGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+V+VGV+GYV+TP GLR+ TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SKK++ + GKK I L K+ KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKKYETEEGKKDIESQLEKLKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KL +QKKAHLMEIQ+NGG+V K+ +A E+ I
Sbjct: 170 -----------------------KLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID +GVTKGKG++G
Sbjct: 207 PVDAVFHKDEMIDIVGVTKGKGYEG 231
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 102/135 (75%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID +GVTKGKG+
Sbjct: 170 KLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFHKDEMIDIVGVTKGKGY 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVA 289
Query: 429 AGIHTKDGKVSVTSR 443
H ++ R
Sbjct: 290 KADHESHSAITEFDR 304
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 109/159 (68%), Gaps = 11/159 (6%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 221 VGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE 280
Query: 489 LFLCKKKYLSMVIK-----NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPK 543
L K + V K ++A T++D TEK ITPMGGFPHYG V +D++M+KGCC+GPK
Sbjct: 281 L----NKKIYKVAKADHESHSAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPK 336
Query: 544 KRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
KRVITLR+ LLK+ + A L EI+L + K R
Sbjct: 337 KRVITLRR-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGR 373
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K LK QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID +GVTK
Sbjct: 168 IRKLKGLK--QKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFHKDEMIDIVGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|148807241|gb|ABR13330.1| putative 60S ribosomal protein L3 [Prunus dulcis]
Length = 284
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/268 (56%), Positives = 191/268 (71%), Gaps = 35/268 (13%)
Query: 36 KKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVR 95
+K SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+KP LTAF+GYKAGMTHIV
Sbjct: 5 RKMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCKLTAFLGYKAGMTHIVG 64
Query: 96 EADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF 155
+ ++PGSK++KKE EAVTI+E PPMV+VGV+GYV+TP GLRS TVWA+HLS+E +RRF
Sbjct: 65 DVEKPGSKLHKKETCEAVTIIEAPPMVVVGVVGYVKTPRGLRSLNTVWAQHLSEEVKRRF 124
Query: 156 YKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQ 215
YKNW KS++KAF K SK ++ + GKK+I K+ KY VIRV+AHTQ +
Sbjct: 125 YKNWCKSKKKAFAKYSKNYESEEGKKSIESQFEKLIKYATVIRVLAHTQIR--------- 175
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
+MK LK QKKAHLMEIQ+NGG++A K+ +A+ E
Sbjct: 176 ------------------------KMKGLK--QKKAHLMEIQVNGGTIAQKVEFAKSFFE 209
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +P+ VF +DEMID IGVTKGKG++G
Sbjct: 210 KQVPIDAVFQKDEMIDIIGVTKGKGYEG 237
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 83/103 (80%), Gaps = 2/103 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A K+ +A+ E+ +P+ VF +DEMID IGVTKGKG
Sbjct: 177 MKGLK--QKKAHLMEIQVNGGTIAQKVEFAKSFFEKQVPIDAVFQKDEMIDIIGVTKGKG 234
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAG 410
++GV +RW +LPRKTH+GLRKVACIGAWHP+R TVARAG
Sbjct: 235 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARFSXTVARAG 277
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A+ E+ +P+ VF +DEMID IGVTK
Sbjct: 174 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVEFAKSFFEKQVPIDAVFQKDEMIDIIGVTK 231
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 232 GKGYEGVV 239
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAG 479
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+R TVARAG
Sbjct: 228 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARFSXTVARAG 277
>gi|255725262|ref|XP_002547560.1| 60S ribosomal protein L3 [Candida tropicalis MYA-3404]
gi|240135451|gb|EER35005.1| 60S ribosomal protein L3 [Candida tropicalis MYA-3404]
Length = 389
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 185/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPPMV+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ K I +L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSGKYATDA--KQIETELARIKKYASVVRVLAHTQIKKTPLS------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGSV+DK+ WAR+H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQINGGSVSDKVDWAREHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID I VTKG GF+G
Sbjct: 204 SVDSVFEQDEMIDVIAVTKGHGFEG 228
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 99/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGSV+DK+ WAR+H E+ + V VF QDEMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQINGGSVSDKVDWAREHFEKEVSVDSVFEQDEMIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGSDEA 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 83/112 (74%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ N +T++D T+K+I PMGGF YG V NDF+++KG G KKRV+TLRK
Sbjct: 289 SDEANGATEFDRTKKTINPMGGFVRYGNVQNDFVLLKGSIPGIKKRVVTLRK 340
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGSV+DK+ WAR+H E+ + V VF QDEMID I
Sbjct: 159 RVLAHTQIKKTPLSQKKAHLAEIQINGGSVSDKVDWAREHFEKEVSVDSVFEQDEMIDVI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|226475922|emb|CAX72051.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 328
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 168/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 77 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 136
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIYR+
Sbjct: 137 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYRI 196
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 197 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 217
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 218 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 270
Query: 548 TLRK 551
TLRK
Sbjct: 271 TLRK 274
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 89/149 (59%), Gaps = 36/149 (24%)
Query: 155 FYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
F K ++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHTQ
Sbjct: 27 FIKIGANPKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHTQ---------- 76
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 274
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH
Sbjct: 77 --------------------------MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHF 110
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+ IPV VF+QDEMID IGVTKGKGFKG
Sbjct: 111 EKQIPVSNVFSQDEMIDVIGVTKGKGFKG 139
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 55 INRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 112
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 113 QIPVSNVFSQDEMIDVIGVTKGKGFK 138
>gi|296812079|ref|XP_002846377.1| 60S ribosomal protein L3 [Arthroderma otae CBS 113480]
gi|238841633|gb|EEQ31295.1| 60S ribosomal protein L3 [Arthroderma otae CBS 113480]
Length = 458
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 138/267 (51%), Positives = 182/267 (68%), Gaps = 42/267 (15%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK+ APRHGS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ +R
Sbjct: 68 HRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTIVRDLER 127
Query: 100 PGSKINKKEIVEAVTILETPP---MVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
PG+K+++KE+VEAVTI+ETPP M+ VG++GY+ETP GLRS TVWA+HLS E +RRFY
Sbjct: 128 PGAKMHRKEVVEAVTIVETPPREQMIAVGIVGYIETPRGLRSLTTVWADHLSDEVKRRFY 187
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
KNWYKS++KAFT+ +K D ++L ++ YC V+R++AHTQ ++ L
Sbjct: 188 KNWYKSKKKAFTRYAKTHADAAA---TTRELERIKNYCTVVRLLAHTQIRKTPL------ 238
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+QKKAHLME+Q+NGGS+A+K+ +A E+
Sbjct: 239 ------------------------------KQKKAHLMEVQVNGGSIAEKVEFAHGLFEK 268
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
PI V VF +DE++D I VTKG GF G
Sbjct: 269 PIDVDTVFEKDEVVDVIAVTKGHGFSG 295
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/115 (72%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGS+A+K+ +A E+PI V VF +DE++D I VTKG GF GVTS
Sbjct: 239 KQKKAHLMEVQVNGGSIAEKVEFAHGLFEKPIDVDTVFEKDEVVDVIAVTKGHGFSGVTS 298
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G
Sbjct: 299 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYRIG 353
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 88/116 (75%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 292 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYR 351
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV NDF+M+KG G +KRV+TLRK
Sbjct: 352 IGKAGDEGNASTDFDVSKKQITPMGGFVRYGEVKNDFVMLKGSIPGVRKRVVTLRK 407
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLME+Q+NGGS+A+K+ +A E+PI V VF +DE++D I VTK
Sbjct: 233 IRKTPL---KQKKAHLMEVQVNGGSIAEKVEFAHGLFEKPIDVDTVFEKDEVVDVIAVTK 289
Query: 609 GKGF 612
G GF
Sbjct: 290 GHGF 293
>gi|255636886|gb|ACU18776.1| unknown [Glycine max]
Length = 257
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKD+P++P LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDNPSQPCGLTAFVGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+V+VGV+GYV+TP GLR+ TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SKK++ + GKK I L K+ KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKKYETEEGKKDIESQLEKLKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KL +QKKAHLMEIQ+NGG+V K+ +A E+ I
Sbjct: 170 -----------------------KLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID +GVTKGKG++G
Sbjct: 207 PVDAVFHKDEMIDIVGVTKGKGYEG 231
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 69/88 (78%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID +GVTKGKG+
Sbjct: 170 KLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFHKDEMIDIVGVTKGKGY 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGA 396
+GV +RW +LPRKTH+GLRKVACIGA
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGA 257
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K LK QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID +GVTK
Sbjct: 168 IRKLKGLK--QKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFHKDEMIDIVGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 25/37 (67%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGA 465
G+ G V +RW +LPRKTH+GLRKVACIGA
Sbjct: 221 VGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA 257
>gi|226480230|emb|CAX78779.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 329
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 168/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 78 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 137
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIYR+
Sbjct: 138 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYRI 197
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 198 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 218
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 219 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 271
Query: 548 TLRK 551
TLRK
Sbjct: 272 TLRK 275
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 87/141 (61%), Gaps = 36/141 (25%)
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHTQ
Sbjct: 36 KKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHTQ------------------ 77
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV
Sbjct: 78 ------------------MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSN 119
Query: 283 VFAQDEMIDCIGVTKGKGFKG 303
VF+QDEMID IGVTKGKGFKG
Sbjct: 120 VFSQDEMIDVIGVTKGKGFKG 140
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 56 INRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 113
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 114 QIPVSNVFSQDEMIDVIGVTKGKGFK 139
>gi|226480246|emb|CAX78787.1| ribosomal protein L3 [Schistosoma japonicum]
gi|226480248|emb|CAX78788.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 328
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 168/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 77 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 136
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIYR+
Sbjct: 137 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYRI 196
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 197 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 217
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 218 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 270
Query: 548 TLRK 551
TLRK
Sbjct: 271 TLRK 274
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 89/149 (59%), Gaps = 36/149 (24%)
Query: 155 FYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
F K ++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHTQ
Sbjct: 27 FIKIGANPKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHTQ---------- 76
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 274
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH
Sbjct: 77 --------------------------MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHF 110
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+ IPV VF+QDEMID IGVTKGKGFKG
Sbjct: 111 EKQIPVSNVFSQDEMIDVIGVTKGKGFKG 139
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 55 INRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 112
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 113 QIPVSNVFSQDEMIDVIGVTKGKGFK 138
>gi|324520529|gb|ADY47657.1| 60S ribosomal protein L3 [Ascaris suum]
Length = 193
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 128/163 (78%), Positives = 146/163 (89%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
KFSAPRHGSMGF PKKRS RHRGKVK FPKDDPTKP+HLTAFIG+KAGMTHIVRE D+PG
Sbjct: 10 KFSAPRHGSMGFTPKKRSRRHRGKVKAFPKDDPTKPIHLTAFIGFKAGMTHIVREVDKPG 69
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
SK+NKKE+VEAVTILETPPMVIVG++GY++TP G R FKTVWAEHLS++CRRRFYKNW+
Sbjct: 70 SKVNKKEVVEAVTILETPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRRRFYKNWHT 129
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ 204
S++KAF K +KKWQD+ G+K+I DL KM KYC IRVIAHTQ
Sbjct: 130 SKKKAFQKHAKKWQDEDGRKSIESDLNKMKKYCSKIRVIAHTQ 172
>gi|226480232|emb|CAX78780.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 252
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 168/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 1 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 60
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIYR+
Sbjct: 61 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYRI 120
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 121 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 141
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 142 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 194
Query: 548 TLRK 551
TLRK
Sbjct: 195 TLRK 198
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 1 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 60
Query: 301 FKG 303
FKG
Sbjct: 61 FKG 63
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 53/62 (85%)
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 1 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 60
Query: 612 FK 613
FK
Sbjct: 61 FK 62
>gi|255641019|gb|ACU20789.1| unknown [Glycine max]
Length = 323
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/265 (56%), Positives = 188/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKD+P++P LT F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDNPSQPCRLTTFVGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+V+VGV+GYV+TP GLR+ T+WA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTIWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK SKK++ + GKK I L K+ KY VIRV+AHTQ +
Sbjct: 122 WCKSKKKAFTKYSKKYETEEGKKDIESQLEKLKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KL +QKKAHLMEIQ+NGG+V K+ +A E+ I
Sbjct: 170 -----------------------KLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 98/120 (81%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID IGVTKGKG+
Sbjct: 170 KLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTKGKGY 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNK+IY++
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKRIYKVA 289
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 9/102 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTEL
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEL 281
Query: 490 FLCKKKYLSMVIK-----NNASTDYDLTEKSITPMGGFPHYG 526
K + V K ++A T++D TEK ITPMGGFPHYG
Sbjct: 282 ----NKRIYKVAKADQESHSAITEFDRTEKDITPMGGFPHYG 319
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K LK QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID IGVTK
Sbjct: 168 IRKLKGLK--QKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|145340549|ref|XP_001415385.1| Ribosomal protein L3, component of cytosolic 80S ribosome and 60S
large subunit [Ostreococcus lucimarinus CCE9901]
gi|144575608|gb|ABO93677.1| Ribosomal protein L3, component of cytosolic 80S ribosome and 60S
large subunit [Ostreococcus lucimarinus CCE9901]
Length = 386
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 181/265 (68%), Gaps = 39/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR+G++GF PKKRS R RGKVK FPKDD +KP HLTAF+G+KAGMTHIVR+ D
Sbjct: 2 SHRKFEHPRYGNLGFLPKKRSKRSRGKVKSFPKDDASKPPHLTAFMGFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E+VTI+E P +++VG++GYV TP GLR KTVWAEHL+ E RRRFYKN
Sbjct: 62 KPGSKMHKKETCESVTIIECPELIVVGLVGYVRTPKGLRGKKTVWAEHLNDEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK +K + + +I +DL ++ K C VIRVIAHTQ +
Sbjct: 122 WFKSKKKAFTKYTKNYTN----GSIDKDLDELKKSCDVIRVIAHTQVR------------ 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K+ +QKKAH+MEIQ+NGG VA K+ + E+ +
Sbjct: 166 -----------------------KVSGLKQKKAHIMEIQVNGGDVAAKVDFGYALFEKAV 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKGKG++G
Sbjct: 203 PVDTVFQQDEMIDLIGVTKGKGYEG 227
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 95/115 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGG VA K+ + E+ +PV VF QDEMID IGVTKGKG++GV +
Sbjct: 171 KQKKAHIMEIQVNGGDVAAKVDFGYALFEKAVPVDTVFQQDEMIDLIGVTKGKGYEGVVT 230
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKV CIGAWHPSRV +TVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 231 RWGVTRLPRKTHRGLRKVGCIGAWHPSRVSYTVARAGQHGYHHRTEINKKVYKIG 285
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 98/136 (72%), Gaps = 6/136 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKV CIGAWHPSRV +TVARAGQ GYHHRTE
Sbjct: 218 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVGCIGAWHPSRVSYTVARAGQHGYHHRTE- 276
Query: 490 FLCKKKY-LSMVIKNN--ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + +++ AST +D TEK ITPMGGF HYG V +D++MIKG +GP+KR+
Sbjct: 277 -INKKVYKIGKAGQDSFGASTFHDPTEKEITPMGGFAHYGIVKHDYVMIKGGVVGPRKRL 335
Query: 547 ITLRKMKLLKKRQKKA 562
IT+R+ L K+ ++ A
Sbjct: 336 ITMRQ-SLFKQTRRVA 350
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
G ++ D +K C RVI +RK+ LK QKKAH+MEIQ+NGG VA K+ +
Sbjct: 140 GSIDKDLDELKKSC--DVIRVIAHTQVRKVSGLK--QKKAHIMEIQVNGGDVAAKVDFGY 195
Query: 583 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
E+ +PV VF QDEMID IGVTKGKG++ V
Sbjct: 196 ALFEKAVPVDTVFQQDEMIDLIGVTKGKGYEGVV 229
>gi|384483788|gb|EIE75968.1| 60S ribosomal protein L3 [Rhizopus delemar RA 99-880]
Length = 384
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/259 (55%), Positives = 183/259 (70%), Gaps = 38/259 (14%)
Query: 45 APRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKI 104
+PRHG +GF P+KR+ HRG+VK +PKDD KPVHLTAF+GYKAGMTHIVR+ +RPGSK+
Sbjct: 5 SPRHGHLGFGPRKRTRSHRGRVKAYPKDDAKKPVHLTAFMGYKAGMTHIVRDLERPGSKM 64
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQ 164
+KKEIVEAVT++E P MV+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKNWY+S++
Sbjct: 65 HKKEIVEAVTVIEVPAMVVVGVVGYVETPRGLRSLTTVWAEHLSEEAKRRFYKNWYRSKK 124
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
KAFTK ++K+ + G K + ++L ++ KYC V+RVIAHTQ + LH
Sbjct: 125 KAFTKYAQKYAE--GAKDVTRELERIKKYCSVVRVIAHTQISKAKLH------------- 169
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
Q+KAH+MEIQLNGGSV K+ WAR+H E+ + VG +F
Sbjct: 170 -----------------------QRKAHIMEIQLNGGSVEQKVDWAREHFEKEVTVGSIF 206
Query: 285 AQDEMIDCIGVTKGKGFKG 303
QDEMID I TKG GF+G
Sbjct: 207 EQDEMIDIIATTKGHGFEG 225
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
Q+KAH+MEIQLNGGSV K+ WAR+H E+ + VG +F QDEMID I TKG GF+GVT R
Sbjct: 170 QRKAHIMEIQLNGGSVEQKVDWAREHFEKEVTVGSIFEQDEMIDIIATTKGHGFEGVTHR 229
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHPSRV ++VARAGQ+GYH RTE+NKKIYR+ G K
Sbjct: 230 WGTKKLPRKTHRGLRKVACIGAWHPSRVMYSVARAGQRGYHRRTEINKKIYRIATGADAK 289
Query: 435 DG 436
G
Sbjct: 290 SG 291
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 102/143 (71%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHPSRV ++VARAGQ+GYH RTE+ + +
Sbjct: 226 VTHRWGTKKLPRKTHRGLRKVACIGAWHPSRVMYSVARAGQRGYHRRTEINKKIYRIATG 285
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ +T+YDLTEK ITPMGGFPHYGEVN DF+MIKGCC G KKRVITLRK L
Sbjct: 286 ADAKSGTTEYDLTEKQITPMGGFPHYGEVNEDFVMIKGCCAGAKKRVITLRKS--LTVHT 343
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
K++ L ++ L + K R
Sbjct: 344 KRSALEKVTLKFIDTSSKFGHGR 366
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+V + IK C RVI ++ K Q+KAH+MEIQLNGGSV K+ WAR+H E
Sbjct: 140 DVTRELERIKKYC--SVVRVIAHTQISKAKLHQRKAHIMEIQLNGGSVEQKVDWAREHFE 197
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
+ + VG +F QDEMID I TKG GF+ H
Sbjct: 198 KEVTVGSIFEQDEMIDIIATTKGHGFEGVTH 228
>gi|312283375|dbj|BAJ34553.1| unnamed protein product [Thellungiella halophila]
Length = 389
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDD TKP TAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETP MV+VGV+ YV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT +K+++ + GKK+I L KM KY VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTGYAKQYESEDGKKSIHAQLEKMKKYGTVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIDSVFQKDEMIDVIGVTKGKGYEG 231
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIDSVFQKDEMIDVIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 107/153 (69%), Gaps = 7/153 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY-LSMVIK--NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y L V + + A T+YD TEK +TPMGGF HYG V +D+LMIKGC MGPKKRV
Sbjct: 281 -LNKKIYRLGKVGQETHTAMTEYDRTEKDVTPMGGFAHYGIVKDDYLMIKGCRMGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIA 579
+TLR+ LL + + A L EI+L + K+
Sbjct: 340 VTLRQ-SLLTQTSRLA-LEEIRLKFIDTSSKMG 370
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIDSVFQKDEMIDVIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|148682756|gb|EDL14703.1| mCG1036344 [Mus musculus]
Length = 360
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 148/272 (54%), Positives = 182/272 (66%), Gaps = 46/272 (16%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KFSAP+HG +GF P KRS+ H KVK FPKDD +KPV+LT F+GYKAGMTHIV+E D
Sbjct: 2 SHSKFSAPKHGFLGFLPHKRSSWHHRKVKSFPKDDASKPVYLTTFLGYKAGMTHIVQEVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIG-------YVETPHGLRSFKTVWAEHLSQEC 151
RPGSK+NKKE+VEAVTI++ P+ YVE+P GLR+F TV+AEH+S EC
Sbjct: 62 RPGSKVNKKEVVEAVTIVD--PLTPPPPPVVVVGVVGYVESPRGLRTFNTVFAEHISDEC 119
Query: 152 RRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLH 211
+ RFYKNW+KS++KAFTK KKWQD GKK + +D M KYC+VI +IAHT
Sbjct: 120 KWRFYKNWHKSKKKAFTKYYKKWQDGTGKKQLEKDSSSMKKYCQVICIIAHT-------- 171
Query: 212 QNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 271
QM+LL RQ KAHLMEIQ++GG++ADK+ WA+
Sbjct: 172 ----------------------------QMRLLPLRQ-KAHLMEIQVSGGTMADKLGWAQ 202
Query: 272 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ LE +PV QVF QDEMI I VTKGKG+KG
Sbjct: 203 ERLELQVPVNQVFGQDEMIIVIDVTKGKGYKG 234
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/131 (71%), Positives = 111/131 (84%), Gaps = 2/131 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQK AHLMEIQ++GG++ADK+ WA++ LE +PV QVF QDEMI I VTKGKG
Sbjct: 173 MRLLPLRQK-AHLMEIQVSGGTMADKLGWAQERLELQVPVNQVFGQDEMIIVIDVTKGKG 231
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VA+AGQKGYHHR E N KIY++
Sbjct: 232 YKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPARVAFSVAQAGQKGYHHRKETN-KIYKI 290
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 291 GQGYLIKDGKL 301
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 95/118 (80%), Gaps = 6/118 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE---LFLC 492
G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VA+AGQKGYHHR E ++
Sbjct: 231 GYKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPARVAFSVAQAGQKGYHHRKETNKIYKI 290
Query: 493 KKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ YL +IKNNASTDYDL++KSI +GGF HYGEV NDF+M+KGC +G KKRV+
Sbjct: 291 GQGYLIKDGKLIKNNASTDYDLSDKSINSLGGFVHYGEVTNDFIMLKGCVVGTKKRVL 348
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIG 605
+I +M+LL RQK AHLMEIQ++GG++ADK+ WA++ LE +PV QVF QDEMI I
Sbjct: 167 IIAHTQMRLLPLRQK-AHLMEIQVSGGTMADKLGWAQERLELQVPVNQVFGQDEMIIVID 225
Query: 606 VTKGKGFK 613
VTKGKG+K
Sbjct: 226 VTKGKGYK 233
>gi|449435140|ref|XP_004135353.1| PREDICTED: 60S ribosomal protein L3-like [Cucumis sativus]
gi|449503293|ref|XP_004161930.1| PREDICTED: 60S ribosomal protein L3-like [Cucumis sativus]
Length = 388
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 187/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FP+DD +KP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPRDDSSKPCRLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+E PPMV+VGV+GY+ TP GLRSFKTVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIEAPPMVVVGVVGYIRTPRGLRSFKTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S++KAFTK SKK++ + GKK I L + K+ VIRV+AH+Q ++
Sbjct: 122 WCMSKKKAFTKYSKKYETEDGKKDIQSQLDSLRKHSTVIRVLAHSQIRK----------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+ LK QKKAHLMEIQ+NGG V K+ +A E+ +
Sbjct: 171 ----------------------MQGLK--QKKAHLMEIQVNGGDVPKKVDYAYSLFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +F +DEMID IGVTKGKG++G
Sbjct: 207 PVDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG V K+ +A E+ +PV +F +DEMID IGVTKGKG++GV +
Sbjct: 175 KQKKAHLMEIQVNGGDVPKKVDYAYSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 105/161 (65%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++A T++D TEK ITP+GGFPHYG V D+LMIKG C GPKKRV
Sbjct: 281 -MNKKVYKIGKTGQDSHSAMTEFDRTEKDITPIGGFPHYGIVKEDYLMIKGGCAGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+TLR+ L K+ + + EI+L + K R Q
Sbjct: 340 VTLRQS--LIKQTSRVAMEEIKLKFIDTSSKFGHGRFQTTQ 378
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKM+ LK QKKAHLMEIQ+NGG V K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 168 IRKMQGLK--QKKAHLMEIQVNGGDVPKKVDYAYSLFEKQVPVDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|241952212|ref|XP_002418828.1| 60S ribosomal protein L3 [Candida dubliniensis CD36]
gi|223642167|emb|CAX44134.1| ribosomal protein, large subunit, putative [Candida dubliniensis
CD36]
Length = 389
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 185/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPPMV+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ K + +L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSGKYATDA--KQVETELARIKKYASVVRVLAHTQIKKTPLS------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGSV+DK+ WA++H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQINGGSVSDKVDWAKEHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID I VTKG GF+G
Sbjct: 204 SVDSVFEQDEMIDVIAVTKGHGFEG 228
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 99/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF QDEMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQINGGSVSDKVDWAKEHFEKEVSVDSVFEQDEMIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGSDEA 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 84/112 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ N +T++D T+K+I PMGGF YG VNNDF+++KG G KKRV+TLRK
Sbjct: 289 SDEANGATEFDRTKKTINPMGGFVRYGNVNNDFVLLKGSIPGVKKRVVTLRK 340
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF QDEMID I
Sbjct: 159 RVLAHTQIKKTPLSQKKAHLAEIQINGGSVSDKVDWAKEHFEKEVSVDSVFEQDEMIDVI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|68491020|ref|XP_710682.1| likely cytosolic ribosomal protein L3 [Candida albicans SC5314]
gi|68491039|ref|XP_710673.1| likely cytosolic ribosomal protein L3 [Candida albicans SC5314]
gi|46431906|gb|EAK91425.1| likely cytosolic ribosomal protein L3 [Candida albicans SC5314]
gi|46431916|gb|EAK91434.1| likely cytosolic ribosomal protein L3 [Candida albicans SC5314]
gi|238883805|gb|EEQ47443.1| 60S ribosomal protein L3 [Candida albicans WO-1]
Length = 389
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 185/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPPMV+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ K + +L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSGKYATDA--KQVETELARIKKYASVVRVLAHTQIKKTPLS------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGSV+DK+ WA++H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQINGGSVSDKVDWAKEHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID I VTKG GF+G
Sbjct: 204 SVDSVFEQDEMIDVIAVTKGHGFEG 228
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 99/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF QDEMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQINGGSVSDKVDWAKEHFEKEVSVDSVFEQDEMIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGTDEA 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 84/112 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ N +T++D T+K+I PMGGF YG VNNDF+++KG G KKRV+TLRK
Sbjct: 289 TDEANGATEFDRTKKTINPMGGFVRYGNVNNDFVLLKGSIPGVKKRVVTLRK 340
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF QDEMID I
Sbjct: 159 RVLAHTQIKKTPLSQKKAHLAEIQINGGSVSDKVDWAKEHFEKEVSVDSVFEQDEMIDVI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|443922217|gb|ELU41693.1| 60S ribosomal protein L3 [Rhizoctonia solani AG-1 IA]
Length = 381
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 159/360 (44%), Positives = 206/360 (57%), Gaps = 104/360 (28%)
Query: 71 KDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYV 130
+DDP KPVHLTA +GYKAGMTHIVR+ DRPGSK++K+E+VEAV+I+ETPP+++VGV+GYV
Sbjct: 27 QDDPKKPVHLTATMGYKAGMTHIVRDLDRPGSKMHKREVVEAVSIIETPPLIVVGVVGYV 86
Query: 131 ETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKM 190
ETP GLR+ TVWA HLS E +RRFYKNWY+S++KAFT+ +KK + GK T ++L ++
Sbjct: 87 ETPRGLRTLTTVWANHLSDEVKRRFYKNWYRSKKKAFTRYAKKAAENGGKST-QRELERI 145
Query: 191 AKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKK 250
KYC V+RV+AHTQ ++ L +QKK
Sbjct: 146 KKYCTVVRVLAHTQIRKTGL------------------------------------KQKK 169
Query: 251 AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKL 310
AHLMEIQ+NGGS+ADK+A+A E+P+ V VF QDE++D I VTKG GF+G + A
Sbjct: 170 AHLMEIQVNGGSIADKVAFAHGLFEKPVEVSTVFEQDEVVDVIAVTKGHGFEG-VTARWG 228
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
KK +K H + L + + CIG
Sbjct: 229 TKKLPRKTH-------------------KGLRK-------------VACIGA-------- 248
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
WH K+ F+VARAGQ GYHHRTELNKKIYR+G G
Sbjct: 249 ----WHPSKV----------------------MFSVARAGQDGYHHRTELNKKIYRIGLG 282
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 100/132 (75%), Gaps = 6/132 (4%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT+RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTE L KK Y
Sbjct: 223 VTARWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQDGYHHRTE--LNKKIYRIG 280
Query: 500 VIKN--NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKK 557
+ + NA TD D T+KSITP+GGFPHYG V ND+LM+KG G KKRVIT+RK ++
Sbjct: 281 LGSDAANARTDSDATDKSITPLGGFPHYGIVKNDYLMLKGSIPGTKKRVITIRKSLMVHT 340
Query: 558 RQKKAHLMEIQL 569
++ L ++QL
Sbjct: 341 SRRD--LEKVQL 350
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ADK+A+A E+P+ V VF QDE++D I
Sbjct: 153 RVLAHTQIRKTGLKQKKAHLMEIQVNGGSIADKVAFAHGLFEKPVEVSTVFEQDEVVDVI 212
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 213 AVTKGHGFE 221
>gi|226480220|emb|CAX78774.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 327
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 143/244 (58%), Positives = 167/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKK H+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 76 MRLMKHRQKKTHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 135
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTELNKKIYR+
Sbjct: 136 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTELNKKIYRI 195
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 196 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 216
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 217 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 269
Query: 548 TLRK 551
TLRK
Sbjct: 270 TLRK 273
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 78/133 (58%), Gaps = 36/133 (27%)
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
S+KW D+ G I +DL+K+ KYC V+R IAHTQ
Sbjct: 42 SRKWADEAGLALINRDLKKIKKYCTVVRAIAHTQ-------------------------- 75
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
M+L+K RQKK H+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMI
Sbjct: 76 ----------MRLMKHRQKKTHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMI 125
Query: 291 DCIGVTKGKGFKG 303
D IGVTKGKGFKG
Sbjct: 126 DVIGVTKGKGFKG 138
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKK H+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 54 INRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKTHIMEIQVNGGTISQKVDWIRQHFEK 111
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 112 QIPVSNVFSQDEMIDVIGVTKGKGFK 137
>gi|326475993|gb|EGE00003.1| 60S ribosomal protein L3 [Trichophyton tonsurans CBS 112818]
gi|326485021|gb|EGE09031.1| 60S ribosomal protein L3 [Trichophyton equinum CBS 127.97]
Length = 410
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 143/280 (51%), Positives = 184/280 (65%), Gaps = 41/280 (14%)
Query: 26 PKKRS--ARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAF 83
PK RS AR R + + GS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA
Sbjct: 7 PKIRSPEAREREELGVEDDETDDETGSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTAT 66
Query: 84 IGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW 143
+GYKAGMT IVR+ +RPG+K+++KEIVEAVTI+ETPPM+ VG++GY+ETP GLRS TVW
Sbjct: 67 MGYKAGMTTIVRDLERPGAKMHRKEIVEAVTIVETPPMIAVGIVGYIETPRGLRSLTTVW 126
Query: 144 AEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
A+HLS E +RRFYKNWYKS++KAFT+ +K D T ++L ++ YC V+R++AHT
Sbjct: 127 ADHLSDEVKRRFYKNWYKSKKKAFTRYAKTHADAA---TTTRELERIKNYCTVVRLLAHT 183
Query: 204 QNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSV 263
Q ++ L +QKKAHLMEIQ+NGGSV
Sbjct: 184 QIRKTPL------------------------------------KQKKAHLMEIQVNGGSV 207
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
ADK+ +A E+PI V VF +DE++D I VTKG GF G
Sbjct: 208 ADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTKGHGFSG 247
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +A E+PI V VF +DE++D I VTKG GF GVTS
Sbjct: 191 KQKKAHLMEIQVNGGSVADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTKGHGFSGVTS 250
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G
Sbjct: 251 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYRIG 305
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 88/116 (75%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 244 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYR 303
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++M+KG G +KRV+TLRK
Sbjct: 304 IGKADDEGNASTDFDVSKKRITPMGGFVRYGEVKNDYVMLKGSIPGVRKRVVTLRK 359
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLMEIQ+NGGSVADK+ +A E+PI V VF +DE++D I VTK
Sbjct: 185 IRKTPL---KQKKAHLMEIQVNGGSVADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTK 241
Query: 609 GKGF 612
G GF
Sbjct: 242 GHGF 245
>gi|297846744|ref|XP_002891253.1| hypothetical protein ARALYDRAFT_473757 [Arabidopsis lyrata subsp.
lyrata]
gi|297337095|gb|EFH67512.1| hypothetical protein ARALYDRAFT_473757 [Arabidopsis lyrata subsp.
lyrata]
Length = 389
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 186/265 (70%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDD TKP TAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETP MV+VGV+ YV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT +K+++ + GKK I L KM KY VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTGYAKQYETEEGKKGIQAQLEKMKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 85/151 (56%), Positives = 104/151 (68%), Gaps = 10/151 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + ++A T+YD TEK +TPMGGFPHYG V +D+LMIKGCC+GPKKRV
Sbjct: 281 -LNKKIYRLGKVGTEAHSAMTEYDRTEKDVTPMGGFPHYGVVKDDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKL-----LKKRQKKAHLMEIQLNGG 572
+TLR+ L L + K ++ NGG
Sbjct: 340 VTLRQSLLTQTSRLALEEIKLKFIDTASNGG 370
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|380474654|emb|CCF45659.1| 60S ribosomal protein L3 [Colletotrichum higginsianum]
Length = 391
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/264 (51%), Positives = 178/264 (67%), Gaps = 38/264 (14%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
H K R GS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ DR
Sbjct: 4 HTKLLGTR-GSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDR 62
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
PG+K NKKE+VEAV+I++TPPM++VG++GY+ETP GLRS TVWAEHLS E RRRFYKNW
Sbjct: 63 PGAKANKKEVVEAVSIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEIRRRFYKNW 122
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
YKS++KAFTK +K+ + G +I +++ ++ KYC V+RV+AHTQ ++ L
Sbjct: 123 YKSKKKAFTKYAKQHSESSG-ASITREIERIKKYCTVVRVLAHTQIRKTPL--------- 172
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
QKKAHLMEIQ+NGGS+ADK+ + E+P+
Sbjct: 173 ---------------------------TQKKAHLMEIQVNGGSIADKVDFGYGLFEKPVT 205
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q+EMID I VT G G+ G
Sbjct: 206 IDSIFEQNEMIDVIAVTTGHGYNG 229
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 95/116 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGS+ADK+ + E+P+ + +F Q+EMID I VT G G+ GVTSR
Sbjct: 174 QKKAHLMEIQVNGGSIADKVDFGYGLFEKPVTIDSIFEQNEMIDVIAVTTGHGYNGVTSR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 234 WGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKVYRIGKG 289
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 91/122 (74%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
+ T G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 220 AVTTGHGYNGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSV 279
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ +NASTD D+T+K+ITP+GGF YGEV NDF+M+KG G KKRV+TL
Sbjct: 280 NHKVYRIGKGDADDNASTDVDVTKKTITPLGGFVRYGEVKNDFVMVKGSIPGTKKRVMTL 339
Query: 550 RK 551
RK
Sbjct: 340 RK 341
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHLMEIQ+NGGS+ADK+ + E+P+ + +F Q+EMID I
Sbjct: 160 RVLAHTQIRKTPLTQKKAHLMEIQVNGGSIADKVDFGYGLFEKPVTIDSIFEQNEMIDVI 219
Query: 605 GVTKGKGF 612
VT G G+
Sbjct: 220 AVTTGHGY 227
>gi|302307578|ref|NP_984302.2| 60S ribosomal protein L3 [Ashbya gossypii ATCC 10895]
gi|442570009|sp|Q759R7.2|RL3_ASHGO RecName: Full=60S ribosomal protein L3
gi|299789066|gb|AAS52126.2| ADR206Wp [Ashbya gossypii ATCC 10895]
gi|374107517|gb|AEY96425.1| FADR206Wp [Ashbya gossypii FDAG1]
Length = 387
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/266 (55%), Positives = 185/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAV++++TPPMV+VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD I ++L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAA---IERELARIKKYASVVRVLAHTQVRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGSV++K+ WAR+H E+
Sbjct: 172 -----------------------------VQKKAHLAEIQLNGGSVSEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 203 VSVDSVFEQNEMIDVIAVTKGHGFEG 228
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/116 (71%), Positives = 97/116 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGSV++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKG 288
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+T++D T+K+ITPMGGF HYG VNNDF+M+KG G +KRV+TLRK L
Sbjct: 289 GDEGNAATEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRK-SLYTSTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
++A L E+ L A K R
Sbjct: 348 RRA-LEEVNLKWIDTASKFGKGR 369
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L+ QKKAHL EIQLNGGSV++K+ WAR+H E+ + V VF Q+EMID I VTK
Sbjct: 166 VRKTPLV---QKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTK 222
Query: 609 GKGFKECVH 617
G GF+ H
Sbjct: 223 GHGFEGVTH 231
>gi|226475912|emb|CAX72046.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 341
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/244 (58%), Positives = 167/244 (68%), Gaps = 46/244 (18%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGVTKGKG
Sbjct: 90 MRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGVTKGKG 149
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +V RAGQKGY HRTELNKKIYR+
Sbjct: 150 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVTRAGQKGYFHRTELNKKIYRI 209
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G G+ Q VA+A + R
Sbjct: 210 GMGLQA--------------------------------------QLEVAKA-EAAKDDRD 230
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCCMGP+KRVI
Sbjct: 231 KNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCCMGPRKRVI 283
Query: 548 TLRK 551
TLRK
Sbjct: 284 TLRK 287
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/188 (54%), Positives = 128/188 (68%), Gaps = 36/188 (19%)
Query: 116 LETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQ 175
+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+W KS++KAFTKAS+KW
Sbjct: 1 MECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEECRRRFYKDWCKSKKKAFTKASRKWA 60
Query: 176 DKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSH 235
D+ G I +DL+K+ KYC V+R IAHT
Sbjct: 61 DEAGLALINRDLKKIKKYCTVVRAIAHT-------------------------------- 88
Query: 236 ESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGV 295
QM+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+ IPV VF+QDEMID IGV
Sbjct: 89 ----QMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEKQIPVSNVFSQDEMIDVIGV 144
Query: 296 TKGKGFKG 303
TKGKGFKG
Sbjct: 145 TKGKGFKG 152
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N D IK C R I +M+L+K RQKKAH+MEIQ+NGG+++ K+ W RQH E+
Sbjct: 68 INRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKAHIMEIQVNGGTISQKVDWIRQHFEK 125
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
IPV VF+QDEMID IGVTKGKGFK
Sbjct: 126 QIPVSNVFSQDEMIDVIGVTKGKGFK 151
>gi|110740330|dbj|BAF02060.1| hypothetical protein [Arabidopsis thaliana]
Length = 555
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 185/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDD TKP TAF+GYKAGMTHIVRE +
Sbjct: 168 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 227
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETP MV+VGV+ YV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 228 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 287
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT +K++ + GKK I L KM KY VIRV+AHTQ +
Sbjct: 288 WAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIR------------ 335
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A E+ I
Sbjct: 336 ---------------------KMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 372
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 373 PIEAVFQKDEMIDIIGVTKGKGYEG 397
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 337 MKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKG 394
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+
Sbjct: 395 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 454
Query: 428 G 428
G
Sbjct: 455 G 455
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 104/143 (72%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 388 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 446
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + + A T+YD TEK +TPMGGFPHYG V +D+LMIKGCC+GPKKRV
Sbjct: 447 -LNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRV 505
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
+TLR+ LL + + A L EI+L
Sbjct: 506 VTLRQ-SLLTQTSRLA-LEEIKL 526
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 334 IRKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTK 391
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 392 GKGYEGVV 399
>gi|15218306|ref|NP_175009.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|42571751|ref|NP_973966.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|79319275|ref|NP_001031146.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|334183068|ref|NP_001185148.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|334183070|ref|NP_001185149.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|334183072|ref|NP_001185150.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|334183074|ref|NP_001185151.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|334183076|ref|NP_001185152.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|27735225|sp|P17094.5|RL31_ARATH RecName: Full=60S ribosomal protein L3-1; AltName: Full=Protein
EMBRYO DEFECTIVE 2207
gi|11935191|gb|AAG42011.1|AF327421_1 putative ribosomal protein [Arabidopsis thaliana]
gi|13487800|gb|AAK27726.1|AF361101_1 putative ribosomal protein [Arabidopsis thaliana]
gi|13605657|gb|AAK32822.1|AF361809_1 At1g43170/F1I21_18 [Arabidopsis thaliana]
gi|3617741|gb|AAC36018.1| L3 cytoplasmic ribosomal protein [Arabidopsis thaliana]
gi|14517418|gb|AAK62599.1| At1g43170/F1I21_18 [Arabidopsis thaliana]
gi|15450559|gb|AAK96457.1| At1g43170/F1I21_18 [Arabidopsis thaliana]
gi|15982761|gb|AAL09721.1| At1g43170/F1I21_18 [Arabidopsis thaliana]
gi|332193830|gb|AEE31951.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|332193831|gb|AEE31952.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|332193832|gb|AEE31953.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|332193834|gb|AEE31955.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|332193835|gb|AEE31956.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|332193836|gb|AEE31957.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|332193837|gb|AEE31958.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|332193838|gb|AEE31959.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
Length = 389
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 185/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDD TKP TAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETP MV+VGV+ YV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT +K++ + GKK I L KM KY VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 104/143 (72%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + + A T+YD TEK +TPMGGFPHYG V +D+LMIKGCC+GPKKRV
Sbjct: 281 -LNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
+TLR+ LL + + A L EI+L
Sbjct: 340 VTLRQ-SLLTQTSRLA-LEEIKL 360
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|448523008|ref|XP_003868833.1| Rpl3 ribosomal protein, large subunit [Candida orthopsilosis Co
90-125]
gi|380353173|emb|CCG25929.1| Rpl3 ribosomal protein, large subunit [Candida orthopsilosis]
Length = 389
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 185/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPP+V+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEIRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ K I +L ++ KY V+RV+AHTQ
Sbjct: 122 WYKSKKKAFTKYSAKYASDA--KQIETELARIKKYASVVRVLAHTQ-------------V 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K P+ S KKAHL EIQ+NGGS++DK+ WA++H E+ +
Sbjct: 167 KKTPLAS-----------------------KKAHLAEIQINGGSISDKVDWAKEHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID + VTKG GF+G
Sbjct: 204 SVDSVFEQDEMIDVVAVTKGHGFEG 228
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 98/122 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
KKAHL EIQ+NGGS++DK+ WA++H E+ + V VF QDEMID + VTKG GF+GVT R
Sbjct: 173 SKKAHLAEIQINGGSISDKVDWAKEHFEKEVSVDSVFEQDEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGSDEA 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 84/112 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ N +T++D T+K+I PMGGF YG VNNDF+++KG G KKRV+TLRK
Sbjct: 289 SDEANGATEFDRTKKTINPMGGFVRYGLVNNDFVLLKGSIPGTKKRVVTLRK 340
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K KKAHL EIQ+NGGS++DK+ WA++H E+ + V VF QDEMID +
Sbjct: 159 RVLAHTQVKKTPLASKKAHLAEIQINGGSISDKVDWAKEHFEKEVSVDSVFEQDEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|354548076|emb|CCE44812.1| hypothetical protein CPAR2_406150 [Candida parapsilosis]
Length = 389
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 185/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPP+V+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEIRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ K I +L ++ KY V+RV+AHTQ
Sbjct: 122 WYKSKKKAFTKYSAKYASDA--KQIETELARIKKYASVVRVLAHTQ-------------V 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K P+ S KKAHL EIQ+NGGS++DK+ WA++H E+ +
Sbjct: 167 KKTPLAS-----------------------KKAHLAEIQINGGSISDKVDWAKEHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMID + VTKG GF+G
Sbjct: 204 SVDSVFEQDEMIDVVAVTKGHGFEG 228
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 98/122 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
KKAHL EIQ+NGGS++DK+ WA++H E+ + V VF QDEMID + VTKG GF+GVT R
Sbjct: 173 SKKAHLAEIQINGGSISDKVDWAKEHFEKEVSVDSVFEQDEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGSDES 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 85/112 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++N ST++D T+K+I PMGGF YG VNNDF+++KG G KKRV+TLRK
Sbjct: 289 SDESNGSTEFDRTKKTINPMGGFVRYGLVNNDFVLLKGSIPGTKKRVVTLRK 340
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K KKAHL EIQ+NGGS++DK+ WA++H E+ + V VF QDEMID +
Sbjct: 159 RVLAHTQVKKTPLASKKAHLAEIQINGGSISDKVDWAKEHFEKEVSVDSVFEQDEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|302658162|ref|XP_003020788.1| hypothetical protein TRV_05095 [Trichophyton verrucosum HKI 0517]
gi|291184652|gb|EFE40170.1| hypothetical protein TRV_05095 [Trichophyton verrucosum HKI 0517]
Length = 565
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/255 (52%), Positives = 175/255 (68%), Gaps = 39/255 (15%)
Query: 49 GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKE 108
GS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ +RPG+K+++KE
Sbjct: 33 GSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTIVRDLERPGAKMHRKE 92
Query: 109 IVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFT 168
IVEAVTI+ETPPM+ VG++GY+ETP GLRS TVWA+HLS E +RRFYKNWYKS++KAFT
Sbjct: 93 IVEAVTIVETPPMIAVGIVGYIETPRGLRSLTTVWADHLSDEVKRRFYKNWYKSKKKAFT 152
Query: 169 KASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVN 228
+ +K D T ++L ++ YC V+R++AHTQ ++ L
Sbjct: 153 RYAKTHAD---AATTTRELERIKNYCTVVRLLAHTQIRKTPL------------------ 191
Query: 229 KTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 288
+QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF +DE
Sbjct: 192 ------------------KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIDVDSVFEKDE 233
Query: 289 MIDCIGVTKGKGFKG 303
++D I VTKG GF G
Sbjct: 234 VVDVIAVTKGHGFSG 248
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF +DE++D I VTKG GF GVTS
Sbjct: 192 KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTKGHGFSGVTS 251
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G
Sbjct: 252 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYRIG 306
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 88/116 (75%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 245 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYR 304
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++M+KG G +KRV+TLRK
Sbjct: 305 IGKADDEGNASTEFDVSKKRITPMGGFVRYGEVKNDYVMLKGSIPGVRKRVVTLRK 360
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF +DE++D I VTK
Sbjct: 186 IRKTPL---KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTK 242
Query: 609 GKGF 612
G GF
Sbjct: 243 GHGF 246
>gi|209875731|ref|XP_002139308.1| 60S ribosomal protein L3 [Cryptosporidium muris RN66]
gi|209554914|gb|EEA04959.1| 60S ribosomal protein L3, putative [Cryptosporidium muris RN66]
Length = 390
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 132/265 (49%), Positives = 183/265 (69%), Gaps = 39/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR +R+RGKVK FPKDD T+P HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFERPRSGSLGFLPRKRCSRNRGKVKAFPKDDHTQPPHLTAFMGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTI+ETPPM+ VG +GY+ETP GL++ TV+A +LS+EC+RRFY+N
Sbjct: 62 KPGSKLNKKEVVEAVTIIETPPMICVGFVGYIETPRGLKALTTVFAGYLSEECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+YKS++KAFTK +K + + + + ++ + +YC VIR + HTQ + L+
Sbjct: 122 YYKSKRKAFTKYAKNYVE---NQRMEVEIARCKQYCTVIRALCHTQVSKTGLN------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+KKA LMEIQ+NGG+V +K+ + + EQ I
Sbjct: 172 -----------------------------KKKADLMEIQVNGGTVTEKVDFCVRCFEQQI 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ +F+++EMID IG++KGKG+KG
Sbjct: 203 PISSIFSENEMIDVIGISKGKGYKG 227
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 95/116 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KKA LMEIQ+NGG+V +K+ + + EQ IP+ +F+++EMID IG++KGKG+KGV SR
Sbjct: 172 KKKADLMEIQVNGGTVTEKVDFCVRCFEQQIPISSIFSENEMIDVIGISKGKGYKGVISR 231
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W KLPRKT +G+RKV+CIGAWHP+RVQF V RAGQKGY RTE+NKKIYR+G G
Sbjct: 232 WGVTKLPRKTRRGVRKVSCIGAWHPARVQFQVPRAGQKGYGQRTEMNKKIYRIGHG 287
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 88/125 (70%), Gaps = 6/125 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G V SRW KLPRKT +G+RKV+CIGAWHP+RVQF V RAGQKGY RTE+
Sbjct: 218 GISKGKGYKGVISRWGVTKLPRKTRRGVRKVSCIGAWHPARVQFQVPRAGQKGYGQRTEM 277
Query: 490 FLCKKKYLSMVIKN---NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK + + NAST DLTEK+ITPMGGFP YG V DF+M+KGC +G KKR+
Sbjct: 278 ---NKKIYRIGHGDDPRNASTYADLTEKTITPMGGFPRYGVVTQDFVMLKGCTVGCKKRL 334
Query: 547 ITLRK 551
+TLRK
Sbjct: 335 LTLRK 339
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 44/55 (80%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+KKA LMEIQ+NGG+V +K+ + + EQ IP+ +F+++EMID IG++KGKG+K
Sbjct: 172 KKKADLMEIQVNGGTVTEKVDFCVRCFEQQIPISSIFSENEMIDVIGISKGKGYK 226
>gi|294867277|ref|XP_002765039.1| 60S ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
gi|239864919|gb|EEQ97756.1| 60S ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
Length = 385
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 177/262 (67%), Gaps = 44/262 (16%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ H+GKVK FPKDD +KP HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFEVPRHGSLGFLPRKRTRHHKGKVKSFPKDDQSKPCHLTAFMGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+++KE+VEAVT+LE PPMV VG +GYVETP+GLR+ TVWA+HLS E RRRFYKN
Sbjct: 62 KPGSKLHRKEVVEAVTVLEAPPMVCVGFVGYVETPNGLRALTTVWAKHLSDEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY S++KAF+K +K D ++++ KYC+V+R I HT
Sbjct: 122 WYHSKKKAFSKYQEKDHD--------AEVQRCKKYCQVVRAIMHT--------------- 158
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+ +K QKKAH++E+Q+NGGSV+DK+ + + E+ +
Sbjct: 159 ---------------------QVSKVKLTQKKAHIVEVQVNGGSVSDKVDFCQSLFEKEV 197
Query: 279 PVGQVFAQDEMIDCIGVTKGKG 300
P+ VF +DEM+D IGVTKG G
Sbjct: 198 PISSVFDKDEMVDIIGVTKGHG 219
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 95/121 (78%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
+K QKKAH++E+Q+NGGSV+DK+ + + E+ +P+ VF +DEM+D IGVTKG G
Sbjct: 163 VKLTQKKAHIVEVQVNGGSVSDKVDFCQSLFEKEVPISSVFDKDEMVDIIGVTKGHGNTS 222
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
VT+RW +L RKTH+GLRKVACIGAWHP+RVQF V RAGQ GYHHR E+NKKIYR+G
Sbjct: 223 VTTRWGVTRLARKTHRGLRKVACIGAWHPARVQFQVPRAGQMGYHHRVEINKKIYRIGKA 282
Query: 431 I 431
+
Sbjct: 283 L 283
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 103/144 (71%), Gaps = 8/144 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G SVT+RW +L RKTH+GLRKVACIGAWHP+RVQF V RAGQ GYHHR E
Sbjct: 213 GVTKGHGNTSVTTRWGVTRLARKTHRGLRKVACIGAWHPARVQFQVPRAGQMGYHHRVE- 271
Query: 490 FLCKKKY-LSMVIK---NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ KK Y + ++ NNA+ DLT+K+ITPMGGFPHYGEVN D++M+KG GPKKR
Sbjct: 272 -INKKIYRIGKALREDPNNAAGSNDLTQKAITPMGGFPHYGEVNEDWVMLKGTVTGPKKR 330
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK LL + + A L +I L
Sbjct: 331 VITLRK-SLLPQTSRNA-LEKIDL 352
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R I ++ +K QKKAH++E+Q+NGGSV+DK+ + + E+ +P+ VF +DEM+D I
Sbjct: 153 RAIMHTQVSKVKLTQKKAHIVEVQVNGGSVSDKVDFCQSLFEKEVPISSVFDKDEMVDII 212
Query: 605 GVTKGKG 611
GVTKG G
Sbjct: 213 GVTKGHG 219
>gi|294954638|ref|XP_002788244.1| 60S ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
gi|239903507|gb|EER20040.1| 60S ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
Length = 385
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 177/262 (67%), Gaps = 44/262 (16%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ H+GKVK FPKDD +KP HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFEVPRHGSLGFLPRKRTRHHKGKVKSFPKDDQSKPCHLTAFMGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+++KE+VEAVT+LE PPMV VG +GYVETP+GLR+ TVWA+HLS E RRRFYKN
Sbjct: 62 KPGSKLHRKEVVEAVTVLEAPPMVCVGFVGYVETPNGLRALTTVWAKHLSDEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY S++KAF+K +K D ++++ KYC+V+R I HTQ +
Sbjct: 122 WYHSKKKAFSKYQEKDHD--------AEVQRCKKYCQVVRAIMHTQVSK----------- 162
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+K QKKAH++E+Q+NGGSV+DK+ + + E+ +
Sbjct: 163 -------------------------VKLTQKKAHIVEVQVNGGSVSDKVDFCQSLFEKEV 197
Query: 279 PVGQVFAQDEMIDCIGVTKGKG 300
P+ VF +DEM+D IGVTKG G
Sbjct: 198 PISSVFDKDEMVDIIGVTKGHG 219
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 95/121 (78%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
+K QKKAH++E+Q+NGGSV+DK+ + + E+ +P+ VF +DEM+D IGVTKG G
Sbjct: 163 VKLTQKKAHIVEVQVNGGSVSDKVDFCQSLFEKEVPISSVFDKDEMVDIIGVTKGHGNTS 222
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
VT+RW +L RKTH+GLRKVACIGAWHP+RVQF V RAGQ GYHHR E+NKKIYR+G
Sbjct: 223 VTTRWGVTRLARKTHRGLRKVACIGAWHPARVQFQVPRAGQMGYHHRVEINKKIYRIGKA 282
Query: 431 I 431
+
Sbjct: 283 L 283
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 103/144 (71%), Gaps = 8/144 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G SVT+RW +L RKTH+GLRKVACIGAWHP+RVQF V RAGQ GYHHR E
Sbjct: 213 GVTKGHGNTSVTTRWGVTRLARKTHRGLRKVACIGAWHPARVQFQVPRAGQMGYHHRVE- 271
Query: 490 FLCKKKY-LSMVIK---NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ KK Y + ++ NNA+ DLT+K+ITPMGGFPHYGEVN D++M+KG GPKKR
Sbjct: 272 -INKKIYRIGKALREDPNNAAGSNDLTQKAITPMGGFPHYGEVNEDWVMLKGTVTGPKKR 330
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK LL + + A L +I L
Sbjct: 331 VITLRK-SLLPQTSRNA-LEKIDL 352
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R I ++ +K QKKAH++E+Q+NGGSV+DK+ + + E+ +P+ VF +DEM+D I
Sbjct: 153 RAIMHTQVSKVKLTQKKAHIVEVQVNGGSVSDKVDFCQSLFEKEVPISSVFDKDEMVDII 212
Query: 605 GVTKGKG 611
GVTKG G
Sbjct: 213 GVTKGHG 219
>gi|23397228|gb|AAN31896.1| putative ribosomal protein [Arabidopsis thaliana]
Length = 389
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 184/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDD TKP TAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETP MV+VGV+ YV+TP GLRS TVWA+H S+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHFSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT +K++ + GKK I L KM KY VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 104/143 (72%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + + A T+YD TEK +TPMGGFPHYG V +D+LMIKGCC+GPKKRV
Sbjct: 281 -LNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
+TLR+ LL + + A L EI+L
Sbjct: 340 VTLRQ-SLLTQTSRLA-LEEIKL 360
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|328876376|gb|EGG24739.1| 60S ribosomal protein L3 [Dictyostelium fasciculatum]
Length = 455
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 144/267 (53%), Positives = 184/267 (68%), Gaps = 40/267 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P+K++ R G VK FPKDD +KPVHLTAFIGYKAGMTHIVR+ +
Sbjct: 2 SHRKFEAPRHGSLGFLPRKKANRLLGHVKSFPKDDRSKPVHLTAFIGYKAGMTHIVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+ GSK++KKEIVEAVTI+ETPPMV+VG++GY ET GLR++KTVWA+HLS E RR FYK+
Sbjct: 62 KLGSKMHKKEIVEAVTIIETPPMVVVGLVGYTETLKGLRAYKTVWAQHLSNEFRRHFYKS 121
Query: 159 WYKSRQK-AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQ-QSLHQNQQS 216
W KS+ K AFTK SKK+++ G I+ + + + C +IRVIAH+Q + +LH
Sbjct: 122 WCKSKNKLAFTKYSKKFEE--GTIKISNAVEAIKRKCAIIRVIAHSQPAKVAALH----- 174
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
QKKAH++EIQLNGGS+ADK+ WA E+
Sbjct: 175 -------------------------------QKKAHMLEIQLNGGSIADKLKWAVDMFEK 203
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
I + VFA++EM+D I VTKGKGF+G
Sbjct: 204 TISIESVFAENEMLDVISVTKGKGFQG 230
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/114 (70%), Positives = 92/114 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH++EIQLNGGS+ADK+ WA E+ I + VFA++EM+D I VTKGKGF+GV R
Sbjct: 175 QKKAHMLEIQLNGGSIADKLKWAVDMFEKTISIESVFAENEMLDVISVTKGKGFQGVVKR 234
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W KKLPRKTHKGLRKVACIGAWHPSRV TV RAGQ G+ HR E NKKIYR+G
Sbjct: 235 WGVKKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQMGFFHRVETNKKIYRIG 288
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 83/117 (70%), Gaps = 5/117 (4%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE----LFLCKKK 495
V RW KKLPRKTHKGLRKVACIGAWHPSRV TV RAGQ G+ HR E ++ K
Sbjct: 231 VVKRWGVKKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQMGFFHRVETNKKIYRIGKA 290
Query: 496 YLSMVIK-NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K +T++D+T K+ITPMGGF +YG V N+F+M+KGC GP KRVITLRK
Sbjct: 291 QPTTGPKIPTGATEFDITAKTITPMGGFLNYGVVRNEFIMVKGCVGGPAKRVITLRK 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
QKKAH++EIQLNGGS+ADK+ WA E+ I + VFA++EM+D I VTKGKGF+ V
Sbjct: 175 QKKAHMLEIQLNGGSIADKLKWAVDMFEKTISIESVFAENEMLDVISVTKGKGFQGVV 232
>gi|344302517|gb|EGW32791.1| 60S ribosomal protein L3 [Spathaspora passalidarum NRRL Y-27907]
Length = 389
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 184/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR++ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRASNQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPPMV+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK S K+ K + +L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WFKSKKKAFTKYSTKYAGDA--KQVETELARIKKYASVVRVLAHTQIKKTPLA------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGSV+DK+ WAR+H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQINGGSVSDKVDWAREHFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID I VTKG GF+G
Sbjct: 204 SVSSVFEQNEMIDVIAVTKGHGFEG 228
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGSV+DK+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQINGGSVSDKVDWAREHFEKEVSVSSVFEQNEMIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G+G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGSGADES 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 85/112 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + + S
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGSG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++N +T++D T+K+I PMGGF YG V NDF+++KG G KKRV+TLRK
Sbjct: 289 ADESNGATEFDRTKKTINPMGGFVRYGNVKNDFVLLKGSIPGIKKRVVTLRK 340
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGSV+DK+ WAR+H E+ + V VF Q+EMID I
Sbjct: 159 RVLAHTQIKKTPLAQKKAHLAEIQINGGSVSDKVDWAREHFEKEVSVSSVFEQNEMIDVI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|166858|gb|AAA66160.1| ribosomal protein [Arabidopsis thaliana]
Length = 389
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 185/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDD TKP TAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETP MV+VGV+ YV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT +K++ + GKK I L K+ KY VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKVKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/143 (58%), Positives = 102/143 (71%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + + A T+YD TEK +TPMGGFPHYG V +D+ MIKGCC+G KKRV
Sbjct: 281 -LNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYFMIKGCCVGAKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
+TLR+ LL + + A L EI+L
Sbjct: 340 VTLRQ-SLLTQTSRLA-LEEIKL 360
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>gi|385305996|gb|EIF49936.1| 60s ribosomal protein l3 [Dekkera bruxellensis AWRI1499]
Length = 389
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 184/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFS PRHGS+GF P+KR+++ RG ++ FPKDD TKPVHLTAF+GYKAGMT IVR+ +
Sbjct: 2 SHRKFSEPRHGSLGFLPRKRASQQRGHIRAFPKDDKTKPVHLTAFLGYKAGMTTIVRDLN 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGS ++K+EIVEA T+++TP +V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSNVHKREIVEAATVVDTPELVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS+++AF K S+K+ + G I +L ++ KYC V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKRAFAKYSEKYAN--GAADIETELARVKKYCSVVRVLVHTQIRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQLNGGSV+DK+ WA++H E+ +
Sbjct: 172 ----------------------------SQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDE +D I VT+G G++G
Sbjct: 204 PVDTVFEQDESVDVIAVTRGHGYEG 228
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 92/114 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGSV+DK+ WA++H E+ +PV VF QDE +D I VT+G G++GVT R
Sbjct: 173 QKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVPVDTVFEQDESVDVIAVTRGHGYEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+ T KLPRKTH+G RKVACIG WHPS V + VAR+GQ GYHHRT +N K+YR+G
Sbjct: 233 YGTTKLPRKTHRGARKVACIGPWHPSHVNWAVARSGQNGYHHRTSVNNKVYRVG 286
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 81/116 (69%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT R+ T KLPRKTH+G RKVACIG WHPS V + VAR+GQ GYHHRT + +
Sbjct: 225 GYEGVTHRYGTTKLPRKTHRGARKVACIGPWHPSHVNWAVARSGQNGYHHRTSVNNKVYR 284
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ + STD+D T+K+I P+GGF YGEV NDF+++KG GP KR+ITLRK
Sbjct: 285 VGKAGDEASGSTDFDRTKKTINPLGGFVKYGEVKNDFVLLKGSIPGPVKRIITLRK 340
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
++ + +K C RV+ +++ QKKAHL EIQLNGGSV+DK+ WA++H
Sbjct: 142 ADIETELARVKKYC--SVVRVLVHTQIRKTPLSQKKAHLAEIQLNGGSVSDKVDWAKEHF 199
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
E+ +PV VF QDE +D I VT+G G++ H
Sbjct: 200 EKTVPVDTVFEQDESVDVIAVTRGHGYEGVTH 231
>gi|284073154|gb|ADB77816.1| 60S ribosomal protein L3 [Chlamydomonas reinhardtii]
gi|284073156|gb|ADB77817.1| 60S ribosomal protein L3 [Cladophora coelothrix]
Length = 384
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 178/265 (67%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR R +GKVK FP+DD +KPVHLTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRSGSLGFSPRKRCRRGKGKVKSFPRDDASKPVHLTAFMGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+E PPMV+VG +GYV+TP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIECPPMVVVGAVGYVKTPRGLRSLNTVWAEHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ D GKK I +L + K+C VIRV+AHT
Sbjct: 122 WYKSKKKAFTKYAKKYSD--GKKAIEAELAALKKHCCVIRVLAHT--------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+K L KKAHLME+Q+NGG+VA K+ +A E+ +
Sbjct: 165 ---------------------QVKKLGFGVKKAHLMEVQVNGGTVAQKVDFAYSMFEKQV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF +EMID I +TKG G +G
Sbjct: 204 SVDAVFQPNEMIDTIAITKGHGVQG 228
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 92/113 (81%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAHLME+Q+NGG+VA K+ +A E+ + V VF +EMID I +TKG G +GV RW
Sbjct: 174 KKAHLMEVQVNGGTVAQKVDFAYSMFEKQVSVDAVFQPNEMIDTIAITKGHGVQGVVQRW 233
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ+G+HHRTE+NKK+Y++G
Sbjct: 234 GVTRLPRKTHRGLRKVACIGAWHPARVKWTVARAGQQGFHHRTEINKKVYKIG 286
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 104/151 (68%), Gaps = 9/151 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ+G+HHRTE+ KK
Sbjct: 225 GVQGVVQRWGVTRLPRKTHRGLRKVACIGAWHPARVKWTVARAGQQGFHHRTEI---NKK 281
Query: 496 YLSMVIKNNAS----TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K +AS T++D+T+K ITPMGGFPHYG V+ D+LMIKGC G KKR ITLR+
Sbjct: 282 VYKIGKKGDASHLATTEFDVTKKEITPMGGFPHYGVVSEDYLMIKGCVPGTKKRAITLRR 341
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
LL + + A L E++L A K R
Sbjct: 342 -SLLPQTSRNA-LEEVKLKFIDTASKFGHGR 370
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 536 KGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 595
K CC+ RV+ ++K L KKAHLME+Q+NGG+VA K+ +A E+ + V VF
Sbjct: 153 KHCCV---IRVLAHTQVKKLGFGVKKAHLMEVQVNGGTVAQKVDFAYSMFEKQVSVDAVF 209
Query: 596 AQDEMIDCIGVTKGKGFKECV 616
+EMID I +TKG G + V
Sbjct: 210 QPNEMIDTIAITKGHGVQGVV 230
>gi|159489312|ref|XP_001702641.1| ribosomal protein L3, component of cytosolic 80S ribosome and 60S
large subunit [Chlamydomonas reinhardtii]
gi|158280663|gb|EDP06420.1| ribosomal protein L3 [Chlamydomonas reinhardtii]
Length = 386
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 178/265 (67%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR R +GKVK FP+DD +KPVHLTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRSGSLGFSPRKRCRRGKGKVKSFPRDDASKPVHLTAFMGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+E PPMV+VG +GYV+TP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIECPPMVVVGAVGYVKTPRGLRSLNTVWAEHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ D GKK I +L + K+C VIRV+AHT
Sbjct: 122 WYKSKKKAFTKYAKKYSD--GKKAIEAELAALKKHCCVIRVLAHT--------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+K L KKAHLME+Q+NGG+VA K+ +A E+ +
Sbjct: 165 ---------------------QVKKLGFGVKKAHLMEVQVNGGTVAQKVDFAYSMFEKQV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF +EMID I +TKG G +G
Sbjct: 204 SVDAVFQPNEMIDTIAITKGHGVQG 228
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 92/113 (81%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAHLME+Q+NGG+VA K+ +A E+ + V VF +EMID I +TKG G +GV RW
Sbjct: 174 KKAHLMEVQVNGGTVAQKVDFAYSMFEKQVSVDAVFQPNEMIDTIAITKGHGVQGVVQRW 233
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ+G+HHRTE+NKK+Y++G
Sbjct: 234 GVTRLPRKTHRGLRKVACIGAWHPARVKWTVARAGQQGFHHRTEINKKVYKIG 286
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 104/151 (68%), Gaps = 9/151 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ+G+HHRTE+ KK
Sbjct: 225 GVQGVVQRWGVTRLPRKTHRGLRKVACIGAWHPARVKWTVARAGQQGFHHRTEI---NKK 281
Query: 496 YLSMVIKNNAS----TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K +AS T++D+T+K ITPMGGFPHYG V+ D+LMIKGC G KKR ITLR+
Sbjct: 282 VYKIGKKGDASHLATTEFDVTKKEITPMGGFPHYGVVSEDYLMIKGCVPGTKKRAITLRR 341
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
LL + + A L E++L A K R
Sbjct: 342 -SLLPQTSRNA-LEEVKLKFIDTASKFGHGR 370
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 536 KGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 595
K CC+ RV+ ++K L KKAHLME+Q+NGG+VA K+ +A E+ + V VF
Sbjct: 153 KHCCV---IRVLAHTQVKKLGFGVKKAHLMEVQVNGGTVAQKVDFAYSMFEKQVSVDAVF 209
Query: 596 AQDEMIDCIGVTKGKGFKECV 616
+EMID I +TKG G + V
Sbjct: 210 QPNEMIDTIAITKGHGVQGVV 230
>gi|148697895|gb|EDL29842.1| mCG129893 [Mus musculus]
Length = 358
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/221 (61%), Positives = 162/221 (73%), Gaps = 37/221 (16%)
Query: 84 IGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPP-MVIVGVIGYVETPHGLRSFKTV 142
+GYKAGMTHIVRE DRPGSK+NKKE+VEAVTI+ETPP MV+VG++GYVETP GLR+FKTV
Sbjct: 1 LGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPPMVVVGIVGYVETPQGLRTFKTV 60
Query: 143 WAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAH 202
+AEH+S EC+R FYKNW+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAH
Sbjct: 61 FAEHISDECKRHFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAH 120
Query: 203 TQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGS 262
TQ M+LL RQKKAHLMEIQ+NGG+
Sbjct: 121 TQ------------------------------------MRLLPLRQKKAHLMEIQVNGGT 144
Query: 263 VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 145 VAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 185
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 123 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 182
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 183 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 242
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 243 GQGYLIKDGKL 253
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 176 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 235
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGE+ NDF+M+KGC +G
Sbjct: 236 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEMTNDFIMLKGCVVGT 295
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ + + ++++
Sbjct: 296 KKRVLTLRKSLLVQTKCRALEKIDLKF 322
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 100 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 157
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 158 QQVPVNQVFGQDEMIDVIGVTKGKGYK 184
>gi|188572405|gb|ACD65109.1| putative 60S ribosomal protein RPL3 [Novocrania anomala]
Length = 191
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/226 (63%), Positives = 174/226 (76%), Gaps = 36/226 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKRS RHRGK+K FPKDDP+KPVH+TAFIGYKAGM+HIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPKKRSKRHRGKIKAFPKDDPSKPVHMTAFIGYKAGMSHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK NKKE+VEAVTI+E+PP+++VGV+GY+ETP GLR FKT++AEHLS+ECRRRFYKN
Sbjct: 62 RPGSKTNKKEVVEAVTIVESPPVIVVGVVGYIETPRGLRPFKTIFAEHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK+++KAFTK +KKWQD+ GKK I +D +M KYCKVIRV+ HT
Sbjct: 122 WYKAKKKAFTKYAKKWQDEDGKKDIEKDFAQMRKYCKVIRVVVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVA 264
Q+K+LKKRQKKAH++EI LNGG++A
Sbjct: 167 ---------------------QIKVLKKRQKKAHILEIPLNGGTIA 191
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVA 575
++ DF ++ C RV+ ++K+LKKRQKKAH++EI LNGG++A
Sbjct: 145 DIEKDFAQMRKYCKVI--RVVVHTQIKVLKKRQKKAHILEIPLNGGTIA 191
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 23/24 (95%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVA 331
+K+LKKRQKKAH++EI LNGG++A
Sbjct: 168 IKVLKKRQKKAHILEIPLNGGTIA 191
>gi|302502186|ref|XP_003013084.1| hypothetical protein ARB_00629 [Arthroderma benhamiae CBS 112371]
gi|291176646|gb|EFE32444.1| hypothetical protein ARB_00629 [Arthroderma benhamiae CBS 112371]
Length = 557
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/255 (52%), Positives = 175/255 (68%), Gaps = 39/255 (15%)
Query: 49 GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKE 108
GS+ + P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ +RPG+K+++KE
Sbjct: 33 GSLAYLPRKRAARHRGKVKSFPKDDPKKPVHLTATMGYKAGMTTIVRDLERPGAKMHRKE 92
Query: 109 IVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFT 168
IVEAVTI+ETPPM+ VG++GY+ETP GLRS TVWA+HLS E +RRFYKNWYKS++KAFT
Sbjct: 93 IVEAVTIVETPPMIAVGIVGYIETPRGLRSLTTVWADHLSDEVKRRFYKNWYKSKKKAFT 152
Query: 169 KASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVN 228
+ +K D + ++L ++ YC V+R++AHTQ ++ L
Sbjct: 153 RYAKTHAD---AASTTRELERIKNYCTVVRLLAHTQIRKTPL------------------ 191
Query: 229 KTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 288
+QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF +DE
Sbjct: 192 ------------------KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIDVDSVFEKDE 233
Query: 289 MIDCIGVTKGKGFKG 303
++D I VTKG GF G
Sbjct: 234 VVDVIAVTKGHGFSG 248
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 96/115 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF +DE++D I VTKG GF GVTS
Sbjct: 192 KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTKGHGFSGVTS 251
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G
Sbjct: 252 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYRIG 306
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 88/116 (75%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +
Sbjct: 245 GFSGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSANHKIYR 304
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++M+KG G +KRV+TLRK
Sbjct: 305 IGKADDEGNASTDFDVSKKRITPMGGFVRYGEVKNDYVMLKGSIPGVRKRVVTLRK 360
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLMEIQ+NGGS+ADK+ +A E+PI V VF +DE++D I VTK
Sbjct: 186 IRKTPL---KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIDVDSVFEKDEVVDVIAVTK 242
Query: 609 GKGF 612
G GF
Sbjct: 243 GHGF 246
>gi|426255009|ref|XP_004021160.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L3-like [Ovis
aries]
Length = 491
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 176/265 (66%), Gaps = 49/265 (18%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 99 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 158
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V + A HLS ECRRRFYK+
Sbjct: 159 RPGLKISKREEVEAVTIVETPPLV-------------VVGVVGYVAXHLSDECRRRFYKD 205
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 206 WHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 250
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+ME+QLNGG+VA+K+AW + LE+ +
Sbjct: 251 ---------------------QMKLLPFRQKKAHIMEVQLNGGTVAEKVAWVQARLEKQV 289
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q+E+ID I VTKG+G KG
Sbjct: 290 PVHSVFSQNEVIDVIAVTKGRGVKG 314
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+ME+QLNGG+VA+K+AW + LE+ +PV VF+Q+E+ID I VTKG+G
Sbjct: 252 MKLLPFRQKKAHIMEVQLNGGTVAEKVAWVQARLEKQVPVHSVFSQNEVIDVIAVTKGRG 311
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHH TELNKKIYR+
Sbjct: 312 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHLTELNKKIYRI 371
Query: 428 GAGIHTKDGKV 438
G G+HT+DGKV
Sbjct: 372 GRGLHTEDGKV 382
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 107/143 (74%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHH TE L KK
Sbjct: 311 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHLTE--LNKKI 368
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 369 YRIGRGLHTEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 428
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 429 ITLRKSLLVHHSRQALENIELKF 451
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+ME+QLNGG+VA+K+AW + LE
Sbjct: 229 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEVQLNGGTVAEKVAWVQARLE 286
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q+E+ID I VTKG+G K
Sbjct: 287 KQVPVHSVFSQNEVIDVIAVTKGRGVK 313
>gi|393215986|gb|EJD01477.1| 60S ribosomal protein L3 [Fomitiporia mediterranea MF3/22]
Length = 388
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/265 (57%), Positives = 193/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAARHRGKVKSFPKDDPKKPVHLTAIMGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NK+E+VEAVT++ETPPM++VGV+GYVETP GLR+ TVWA HLS E +RRFYKN
Sbjct: 62 RPGSKMNKREVVEAVTVVETPPMMVVGVVGYVETPRGLRTLTTVWASHLSDELKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G K++A++L ++ KYC V+RV+AHTQ +Q L
Sbjct: 122 WYRSKKKAFTRYAKKAAED-GGKSVARELERIRKYCTVVRVLAHTQIRQTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +A E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVEFAHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F QDE+ID I VTKG GF+G
Sbjct: 205 DVSSIFEQDEVIDVIAVTKGHGFEG 229
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/117 (75%), Positives = 100/117 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +A E+P+ V +F QDE+ID I VTKG GF+GVT
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVEFAHGLFEKPVDVSSIFEQDEVIDVIAVTKGHGFEGVTH 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRVGKG 289
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 88/112 (78%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL +
Sbjct: 230 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRVGKG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+NNA+TD D T+K ITPMGGFPHYG V NDFLM+KG G KKRVITLRK
Sbjct: 290 DDENNATTDADATKKQITPMGGFPHYGIVKNDFLMLKGSIPGTKKRVITLRK 341
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +A E+P+ V +F QDE+ID I
Sbjct: 160 RVLAHTQIRQTGLKQKKAHLMEIQVNGGSVADKVEFAHGLFEKPVDVSSIFEQDEVIDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|50549253|ref|XP_502097.1| 60S ribosomal protein L3 [Yarrowia lipolytica]
gi|49647964|emb|CAG82417.1| YALI0C21560p [Yarrowia lipolytica CLIB122]
Length = 387
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 183/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PRHG +GF P+KR + RGK K FPKDD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEQPRHGHLGFLPRKRCTKSRGKAKSFPKDDKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GSK++K+EIVEA T+++TPPMV+VGV+GYV TP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RRGSKMDKREIVEAATVVDTPPMVVVGVVGYVATPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++ AFTK +K+++ + + ++L ++ KYC V+RV+AHTQ
Sbjct: 122 WYKSKKTAFTKYAKQYEGDAAQ--VQKELERIKKYCTVVRVLAHTQP------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KL +QKKAHL EIQ+NGGSVADK+ WA+QH E+ +
Sbjct: 167 -----------------------KLTPLKQKKAHLAEIQINGGSVADKVEWAQQHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF QDEMID I +TKGKG++G
Sbjct: 204 TIDTVFEQDEMIDAIAITKGKGYEG 228
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 102/128 (79%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHL EIQ+NGGSVADK+ WA+QH E+ + + VF QDEMID I +TKGKG+
Sbjct: 167 KLTPLKQKKAHLAEIQINGGSVADKVEWAQQHFEKTVTIDTVFEQDEMIDAIAITKGKGY 226
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+G T RW TKKLPRKTH+GLRKVACIGAWHP+ VQ+TVAR+GQ GYHHRT N K+YR+G
Sbjct: 227 EGTTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQYTVARSGQDGYHHRTSANHKVYRVG 286
Query: 429 AGIHTKDG 436
G +G
Sbjct: 287 KGGDESNG 294
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 87/120 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G T RW TKKLPRKTH+GLRKVACIGAWHP+ VQ+TVAR+GQ GYHHRT +
Sbjct: 225 GYEGTTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQYTVARSGQDGYHHRTSANHKVYR 284
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
++N ST++D T K+ITPMGGF YGEVNNDFL++KG G KKRVITLRK L
Sbjct: 285 VGKGGDESNGSTEFDRTPKTITPMGGFVRYGEVNNDFLILKGSIPGVKKRVITLRKSMWL 344
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
+V + IK C RV+ + KL +QKKAHL EIQ+NGGSVADK+ WA+QH
Sbjct: 142 AQVQKELERIKKYCT--VVRVLAHTQPKLTPLKQKKAHLAEIQINGGSVADKVEWAQQHF 199
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
E+ + + VF QDEMID I +TKGKG++ H
Sbjct: 200 EKTVTIDTVFEQDEMIDAIAITKGKGYEGTTH 231
>gi|412994087|emb|CCO14598.1| 60S ribosomal protein L3 [Bathycoccus prasinos]
Length = 413
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 173/258 (67%), Gaps = 39/258 (15%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR G +GF PKKRS R RGKVK FPKDD +KP H TAF+G+KAGMTHIVR+ D+PGSK++
Sbjct: 37 PRLGHLGFLPKKRSQRSRGKVKSFPKDDASKPPHFTAFMGFKAGMTHIVRDVDKPGSKLH 96
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KKE EAVTI+E P M++VG++GY TP GLR KTVWAEHLS E +RRFYKNW+KS++K
Sbjct: 97 KKETCEAVTIVECPQMIVVGLVGYRRTPQGLRGVKTVWAEHLSDEIKRRFYKNWFKSKKK 156
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
AF K +KK+ + +I QDL + K C V+RVIAHTQ +
Sbjct: 157 AFQKYAKKYSN----GSIEQDLEALKKSCDVVRVIAHTQVR------------------- 193
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
K+ +QKKAH+MEIQ+NGGSVADK+ + + E+ +PV VF
Sbjct: 194 ----------------KVKNLKQKKAHMMEIQINGGSVADKVDFGFKFFEKAVPVDAVFQ 237
Query: 286 QDEMIDCIGVTKGKGFKG 303
QDEMID I VTKGKGF+G
Sbjct: 238 QDEMIDVIAVTKGKGFEG 255
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 97/115 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGGSVADK+ + + E+ +PV VF QDEMID I VTKGKGF+GV +
Sbjct: 199 KQKKAHMMEIQINGGSVADKVDFGFKFFEKAVPVDAVFQQDEMIDVIAVTKGKGFEGVIT 258
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKVACIG+WHP+RV ++VAR GQ GYHHRTE+NKKIY++G
Sbjct: 259 RWGVTRLPRKTHRGLRKVACIGSWHPARVAYSVARPGQHGYHHRTEINKKIYKIG 313
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 99/147 (67%), Gaps = 9/147 (6%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V +RW +LPRKTH+GLRKVACIG+WHP+RV ++VAR GQ GYHHRTE+ KK +
Sbjct: 256 VITRWGVTRLPRKTHRGLRKVACIGSWHPARVAYSVARPGQHGYHHRTEI---NKKIYKI 312
Query: 500 VIKNNAS----TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ AS TD+D TEK ITPMGGF HYG V ND++MIKG +GP+KR+ITLR+ L
Sbjct: 313 GKADEASFGANTDHDPTEKEITPMGGFGHYGIVKNDYVMIKGAVIGPRKRLITLRQS--L 370
Query: 556 KKRQKKAHLMEIQLNGGSVADKIAWAR 582
K+ ++ +I L + K+ R
Sbjct: 371 FKQTRRVATEKITLKFIDTSSKMGHGR 397
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 61/94 (64%), Gaps = 7/94 (7%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
G + D +K C RVI +RK+K LK QKKAH+MEIQ+NGGSVADK+ +
Sbjct: 168 GSIEQDLEALKKSC--DVVRVIAHTQVRKVKNLK--QKKAHMMEIQINGGSVADKVDFGF 223
Query: 583 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+ E+ +PV VF QDEMID I VTKGKGF+ +
Sbjct: 224 KFFEKAVPVDAVFQQDEMIDVIAVTKGKGFEGVI 257
>gi|448083090|ref|XP_004195305.1| Piso0_005857 [Millerozyma farinosa CBS 7064]
gi|359376727|emb|CCE87309.1| Piso0_005857 [Millerozyma farinosa CBS 7064]
Length = 389
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 186/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVSLTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEA T+++TPP+V+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKVHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD + ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDAT---QVERELARIKKYASVVRVLVHTQIKKTPLS------ 172
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQ+NGGS++DK+ WA++H E+
Sbjct: 173 ------------------------------QKKAHLAEIQVNGGSISDKVDWAKEHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 203 VSVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ VQ++V RAGQ GYHHRT +N K+YR+G+G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVQWSVPRAGQNGYHHRTSINHKVYRVGSGEDES 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 86/112 (76%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ VQ++V RAGQ GYHHRT + + S
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWSVPRAGQNGYHHRTSINHKVYRVGSG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++N +T++D T+K+I PMGGF YGEV NDF+++KG G +KRVITLRK
Sbjct: 289 EDESNGATEFDRTKKTINPMGGFVRYGEVKNDFVLLKGSIPGVRKRVITLRK 340
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I
Sbjct: 159 RVLVHTQIKKTPLSQKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMIDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|50411414|ref|XP_457044.1| 60S ribosomal protein L3 [Debaryomyces hansenii CBS767]
gi|74659529|sp|Q6BXM5.1|RL3_DEBHA RecName: Full=60S ribosomal protein L3
gi|49652709|emb|CAG85030.1| DEHA2B01804p [Debaryomyces hansenii CBS767]
Length = 389
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 184/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KRSA RG+VK FPKD +KPV LTAF+GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEA T+++TPP+V+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + + ++L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTPLA------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGSV+DK+ WA++H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQVNGGSVSDKVDWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF +DEM+D VTKG GF+G
Sbjct: 204 SVDSVFEKDEMVDVAAVTKGHGFEG 228
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 97/116 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF +DEM+D VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ VQ+TVARAGQ G+HHRT +N K+YR+G+
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSA 288
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 86/112 (76%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ VQ+TVARAGQ G+HHRT + + S
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSA 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++ +T++D T+K+I PMGGF YG V NDF+++KG G KKR++T+RK
Sbjct: 289 GDESSGATEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRK 340
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF +DEM+D
Sbjct: 159 RVLAHTQIKKTPLAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVA 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|50311593|ref|XP_455822.1| 60S ribosomal protein L3 [Kluyveromyces lactis NRRL Y-1140]
gi|74660266|sp|Q6CJR7.1|RL3_KLULA RecName: Full=60S ribosomal protein L3
gi|49644958|emb|CAG98530.1| KLLA0F16511p [Kluyveromyces lactis]
Length = 387
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 184/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD TKPV LT+F+GYKAGM+ IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + + + ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAENGAQ--VDRELARIKKYASVVRVLVHTQVRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQLNGGSV+DK+ WA++H E+ +
Sbjct: 172 ----------------------------SQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID + VTKG GF+G
Sbjct: 204 AVDSVFEQNEMIDVVAVTKGHGFEG 228
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 98/116 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGSV+DK+ WA++H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKG 288
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+T++D T+K+ITPMGGF HYG +NNDF+++KG G +KRV+TLRK L
Sbjct: 289 DDEANAATEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVTLKWIDTASKFGKGR 369
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGSV+DK+ WA++H E+ + V VF Q+EMID +
Sbjct: 159 RVLVHTQVRKTPLSQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|119580718|gb|EAW60314.1| ribosomal protein L3, isoform CRA_e [Homo sapiens]
gi|119580723|gb|EAW60319.1| ribosomal protein L3, isoform CRA_e [Homo sapiens]
gi|355563684|gb|EHH20246.1| hypothetical protein EGK_03058 [Macaca mulatta]
gi|390407371|dbj|BAM21009.1| hypothetical protein, partial [Homo sapiens]
Length = 351
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/214 (62%), Positives = 158/214 (73%), Gaps = 36/214 (16%)
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTHIVRE DRPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S
Sbjct: 1 MTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISD 60
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
EC+RRFYKNW+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 61 ECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ----- 115
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
M+LL RQKKAHLMEIQ+NGG+VA+K+ W
Sbjct: 116 -------------------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDW 144
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
AR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 145 ARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 178
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 116 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 175
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 176 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 235
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 236 GQGYLIKDGKL 246
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 169 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 228
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 229 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 288
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 289 KKRVLTLRKSLLVQTKRRALEKIDLKF 315
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 93 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 150
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 151 QQVPVNQVFGQDEMIDVIGVTKGKGYK 177
>gi|126136060|ref|XP_001384554.1| 60S ribosomal protein L3 [Scheffersomyces stipitis CBS 6054]
gi|126091752|gb|ABN66525.1| 60S large subunit ribosomal protein L3.e [Scheffersomyces stipitis
CBS 6054]
Length = 389
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 186/265 (70%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+H+G+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKHQGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEA T+++TPPMV+VGV+GYVETP GLRS TVWAEHLS++ RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + + ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLVHTQIKKTPLS------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGS+ADK+ +A++H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQVNGGSIADKVDFAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID + VTKG GF+G
Sbjct: 204 SVSSVFEQNEMIDVVAVTKGHGFEG 228
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 96/114 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS+ADK+ +A++H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQVNGGSIADKVDFAKEHFEKTVSVSSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVG 286
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 86/112 (76%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGTE 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++ +T++D T+K+I PMGGF YG VNNDF+++KG G +KRV+TLRK
Sbjct: 289 GDESSGATEFDRTKKTINPMGGFVRYGNVNNDFVLLKGSIPGIRKRVVTLRK 340
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGS+ADK+ +A++H E+ + V VF Q+EMID +
Sbjct: 159 RVLVHTQIKKTPLSQKKAHLAEIQVNGGSIADKVDFAKEHFEKTVSVSSVFEQNEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|255717332|ref|XP_002554947.1| 60S ribosomal protein L3 [Lachancea thermotolerans]
gi|238936330|emb|CAR24510.1| KLTH0F17556p [Lachancea thermotolerans CBS 6340]
Length = 388
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/266 (55%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RGKV+ FPKDD +K V LT+F+GYKAGM+ IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRGKVRSFPKDDKSKSVALTSFLGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++TPPMV+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSDEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD I ++L +++KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAA---IERELARISKYATVVRVLAHTQVRKTPLA------ 172
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQ+NGGS ADK+AWAR+H E+
Sbjct: 173 ------------------------------QKKAHLAEIQINGGSTADKVAWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID VTKG GF+G
Sbjct: 203 VSVDSVFEQNEMIDVCAVTKGHGFEG 228
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 96/116 (82%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS ADK+AWAR+H E+ + V VF Q+EMID VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQINGGSTADKVAWAREHFEKTVSVDSVFEQNEMIDVCAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+G+H RT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGFHTRTSINHKVYRVGKG 288
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+G+H RT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGFHTRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NAST++D T+KSITPMGGF YG VNNDF+M+KGC G +KRV+TLRK L
Sbjct: 289 GDEGNASTEFDRTKKSITPMGGFVQYGPVNNDFVMVKGCIPGNRKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L ++ L A K R
Sbjct: 348 RKA-LEQVNLKWIDTASKFGKGR 369
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQ+NGGS ADK+AWAR+H E+ + V VF Q+EMID
Sbjct: 159 RVLAHTQVRKTPLAQKKAHLAEIQINGGSTADKVAWAREHFEKTVSVDSVFEQNEMIDVC 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|254579294|ref|XP_002495633.1| 60S ribosomal protein L3 [Zygosaccharomyces rouxii]
gi|238938523|emb|CAR26700.1| ZYRO0B16082p [Zygosaccharomyces rouxii]
Length = 388
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 184/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+SAPRHGS+GF P+KR A RG+VK FPKDD TKPV LT+F+GYKAGM+ IVR+ D
Sbjct: 2 SHRKYSAPRHGSLGFLPRKRCASPRGRVKSFPKDDKTKPVGLTSFLGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAV++++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFY+N
Sbjct: 62 RPGSKFHKREVVEAVSVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSDEIKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + I ++L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDAAQ--IERELARINKYATVVRVLAHTQIRKTPLS------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGG+ ADK+AWA++H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQINGGTTADKVAWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID VTKG G++G
Sbjct: 204 SVDSVFEQNEMIDVAAVTKGHGYEG 228
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 95/116 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGG+ ADK+AWA++H E+ + V VF Q+EMID VTKG G++GVT R
Sbjct: 173 QKKAHLAEIQINGGTTADKVAWAKEHFEKTVSVDSVFEQNEMIDVAAVTKGHGYEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W T +LPRKTH+GLRKVACIGAWHP+ V ++VARAGQ G+HHRT +N KIYR+G G
Sbjct: 233 WGTTRLPRKTHRGLRKVACIGAWHPNHVMWSVARAGQNGFHHRTSINHKIYRVGKG 288
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 87/116 (75%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT RW T +LPRKTH+GLRKVACIGAWHP+ V ++VARAGQ G+HHRT + +
Sbjct: 225 GYEGVTHRWGTTRLPRKTHRGLRKVACIGAWHPNHVMWSVARAGQNGFHHRTSINHKIYR 284
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NA+T++D T+K+I PMGGFPHYGEV NDF++IKG G KKRV+TLRK
Sbjct: 285 VGKGDDEANAATEFDRTKKTINPMGGFPHYGEVKNDFVVIKGAIPGTKKRVVTLRK 340
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQ+NGG+ ADK+AWA++H E+ + V VF Q+EMID
Sbjct: 159 RVLAHTQIRKTPLSQKKAHLAEIQINGGTTADKVAWAKEHFEKTVSVDSVFEQNEMIDVA 218
Query: 605 GVTKGKGFKECVH 617
VTKG G++ H
Sbjct: 219 AVTKGHGYEGVTH 231
>gi|320586035|gb|EFW98714.1| 60S ribosomal protein L3 [Grosmannia clavigera kw1407]
Length = 442
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 185/284 (65%), Gaps = 41/284 (14%)
Query: 39 SHRKFSAP---RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVR 95
S SAP R S + +KRSA HRG+VK FPKDDP KPVHLTA +GYKAGMT IVR
Sbjct: 49 SPEDISAPLLRRSRSTDNWYRKRSASHRGRVKSFPKDDPKKPVHLTATLGYKAGMTTIVR 108
Query: 96 EADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF 155
+ DRPG+K +KKE+VEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHL E +RRF
Sbjct: 109 DLDRPGAKSHKKEVVEAVTIVDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLGDELKRRF 168
Query: 156 YKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQ 215
YKNWYKS++KAFTK +KK + G +I +++ ++ KYC V+RV+AHTQ ++ L
Sbjct: 169 YKNWYKSKKKAFTKYAKKHSESKG-VSITREIERIKKYCTVVRVLAHTQIRKTPL----- 222
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
+QKKAHLMEIQ+NGGS ADK+ + + E
Sbjct: 223 -------------------------------KQKKAHLMEIQINGGSTADKVEFGQGLFE 251
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
+P V +F QDE+ID I VTKG GF+G + A KK +K H
Sbjct: 252 KPFSVDSIFEQDEVIDVIAVTKGHGFEG-VTARWGTKKLPRKTH 294
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 98/117 (83%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS ADK+ + + E+P V +F QDE+ID I VTKG GF+GVT+
Sbjct: 223 KQKKAHLMEIQINGGSTADKVEFGQGLFEKPFSVDSIFEQDEVIDVIAVTKGHGFEGVTA 282
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ+GYHHRT +N KIYR+G G
Sbjct: 283 RWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQRGYHHRTSVNHKIYRIGKG 339
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 90/112 (80%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT+RW TKKLPRKTHKGLRKVACIGAWHP+ VQ+TVARAGQ+GYHHRT + +
Sbjct: 280 VTARWGTKKLPRKTHKGLRKVACIGAWHPAHVQWTVARAGQRGYHHRTSVNHKIYRIGKG 339
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+NASTD D+T+K+ITP+GGF YGE+NNDF+M+KG G KKRV+TLRK
Sbjct: 340 GSDDNASTDLDVTKKTITPLGGFVRYGEINNDFVMVKGSIPGTKKRVVTLRK 391
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS ADK+ + + E+P V +F QDE+ID I
Sbjct: 210 RVLAHTQIRKTPLKQKKAHLMEIQINGGSTADKVEFGQGLFEKPFSVDSIFEQDEVIDVI 269
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 270 AVTKGHGFE 278
>gi|406701331|gb|EKD04480.1| large subunit ribosomal protein L3 [Trichosporon asahii var. asahii
CBS 8904]
Length = 388
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 183/265 (69%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PR GS+ F P+KR+A+HRG +K FPKDDP KPVHLTA +GYKAGMTH+VR+ D
Sbjct: 2 SHRKYEEPRSGSLAFLPRKRAAKHRGHIKSFPKDDPKKPVHLTAMLGYKAGMTHVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAVT++ETPPMVIVGV+GYVETP GLR+ TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREVVEAVTVVETPPMVIVGVVGYVETPRGLRALTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY+S++KAFT+ +KK + G ++A++L ++ KY V+RV+AHTQ Q L
Sbjct: 122 WYRSKKKAFTRYAKKHSENNG-ASVARELERIKKYATVVRVLAHTQLSQTGL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGS+ADK+ +A+ + E+
Sbjct: 173 ----------------------------AQKKAHLSEIQVNGGSIADKVEFAKANFEKTF 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+E ID I VTKG G+ G
Sbjct: 205 DVKSVFEQNECIDVIAVTKGHGYSG 229
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 92/122 (75%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS+ADK+ +A+ + E+ V VF Q+E ID I VTKG G+ GV SR
Sbjct: 174 QKKAHLSEIQVNGGSIADKVEFAKANFEKTFDVKSVFEQNECIDVIAVTKGHGYSGVISR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W KLPRKTH+GLRKVACIGAWHPS+V F+VAR+GQ GYH RT +N KIYR+ G +
Sbjct: 234 WGVTKLPRKTHRGLRKVACIGAWHPSKVMFSVARSGQDGYHRRTTINHKIYRIDNGTNEG 293
Query: 435 DG 436
G
Sbjct: 294 SG 295
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V SRW KLPRKTH+GLRKVACIGAWHPS+V F+VAR+GQ GYH RT + +
Sbjct: 226 GYSGVISRWGVTKLPRKTHRGLRKVACIGAWHPSKVMFSVARSGQDGYHRRTTINHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ + + ST++DLT+KSI P+GG+ HY + NDF+M+KG G KKRVITLRK L
Sbjct: 286 IDNGTNEGSGSTEFDLTKKSINPVGGWSHYPLIRNDFVMLKGSIPGVKKRVITLRKA--L 343
Query: 556 KKRQKKAHLMEIQL 569
+ + HL EI L
Sbjct: 344 RVHTSRTHLEEITL 357
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
QKKAHL EIQ+NGGS+ADK+ +A+ + E+ V VF Q+E ID I VTKG G+ +
Sbjct: 174 QKKAHLSEIQVNGGSIADKVEFAKANFEKTFDVKSVFEQNECIDVIAVTKGHGYSGVI 231
>gi|367010196|ref|XP_003679599.1| 60S ribosomal protein L3 [Torulaspora delbrueckii]
gi|359747257|emb|CCE90388.1| hypothetical protein TDEL_0B02590 [Torulaspora delbrueckii]
Length = 387
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 185/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAV++++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVSVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD + ++L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSGKYAQDGA---LVERELARIKKYATVVRVLAHTQVRKTPLS------ 172
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 173 ------------------------------QKKAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID + VTKG GF+G
Sbjct: 203 VAVDSVFEQNEMIDVVAVTKGHGFEG 228
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 98/116 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TK+LPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT +N K+YR+G G
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKG 288
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TK+LPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKRLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
++NAST++D T+K+ITPMGGF YG VNNDF+M+KG G +KRV+TLRK L
Sbjct: 289 EDESNASTNFDRTKKTITPMGGFVAYGNVNNDFVMVKGSIPGTRKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVNLKWIDTASKFGKGR 369
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID +
Sbjct: 159 RVLAHTQVRKTPLSQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|156376964|ref|XP_001630628.1| predicted protein [Nematostella vectensis]
gi|156217652|gb|EDO38565.1| predicted protein [Nematostella vectensis]
Length = 216
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 122/169 (72%), Positives = 144/169 (85%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P+KR RHRGKVK FPKDD T P HLTAFIG+KAGMTHI+RE +
Sbjct: 2 SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE VEAVTI+ETPPM++VGV+GY+ETP G+R KT+WAEHLS+EC+RRFYKN
Sbjct: 62 KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQ 207
W S++KAFTKASK+W D GKK+I +D M KYCKVIRVI HTQN +
Sbjct: 122 WCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQNAK 170
>gi|320583084|gb|EFW97300.1| 60S ribosomal protein L3 [Ogataea parapolymorpha DL-1]
Length = 389
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 183/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ + RG+ K FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKFEQPRHGSLGFLPRKRAVKQRGRCKAFPKDVKSKPVALTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEA T+++TP +V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREIVEAATVVDTPELVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS+++AFTK S+K+ + + I ++L ++ KYC V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKRAFTKYSEKYANSAAE--IEKELARIKKYCSVVRVLVHTQIRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGSV+DK+ WA++H E+ +
Sbjct: 172 ----------------------------TQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID I VTKG GF+G
Sbjct: 204 SVDSVFEQNEMIDVIAVTKGHGFEG 228
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 96/114 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W TKKLPRKTH+G RKVACIGAWHPS V +TVARAGQ+GYHHRT +N K+YR+G
Sbjct: 233 WGTKKLPRKTHRGTRKVACIGAWHPSHVMWTVARAGQRGYHHRTSINHKVYRIG 286
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 85/112 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+G RKVACIGAWHPS V +TVARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGTRKVACIGAWHPSHVMWTVARAGQRGYHHRTSINHKVYRIGKA 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ + +T++D T+K+ITPMGGF YG VNNDF+++KG GP KRVITLRK
Sbjct: 289 GDEASGATEFDRTKKTITPMGGFVRYGAVNNDFVLLKGSIPGPVKRVITLRK 340
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVIT-LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 584
E+ + IK C + V T +RK L QKKAHL EIQ+NGGSV+DK+ WA++H
Sbjct: 142 AEIEKELARIKKYCSVVRVLVHTQIRKTPLT---QKKAHLAEIQVNGGSVSDKVDWAKEH 198
Query: 585 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
E+ + V VF Q+EMID I VTKG GF+ H
Sbjct: 199 FEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTH 231
>gi|395757075|ref|XP_002834695.2| PREDICTED: 60S ribosomal protein L3-like, partial [Pongo abelii]
Length = 264
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/213 (61%), Positives = 157/213 (73%), Gaps = 36/213 (16%)
Query: 91 THIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQE 150
THIVRE DRPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S E
Sbjct: 1 THIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDE 60
Query: 151 CRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSL 210
C+RRFYKNW+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 61 CKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ------ 114
Query: 211 HQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWA 270
M+LL RQKKAHLMEIQ+NGG+VA+K+ WA
Sbjct: 115 ------------------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWA 144
Query: 271 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
R+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 145 RERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 177
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 115 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 174
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 175 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 234
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 235 GQGYLIKDGKL 245
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 75/97 (77%), Gaps = 7/97 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 168 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 227
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPM 519
++ + YL +IKNNASTDYDL++KSI P+
Sbjct: 228 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPL 264
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 92 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 149
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 150 QQVPVNQVFGQDEMIDVIGVTKGKGYK 176
>gi|367005320|ref|XP_003687392.1| 60S ribosomal protein L3 [Tetrapisispora phaffii CBS 4417]
gi|357525696|emb|CCE64958.1| hypothetical protein TPHA_0J01360 [Tetrapisispora phaffii CBS 4417]
Length = 387
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RGKV+ FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASVRGKVRAFPKDDKSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++TP +V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDTPEIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ Q+ G I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQEGAG---IERELARIKKYASVVRVLVHTQVRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 172 -----------------------------VQKKAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID + VTKG GF+G
Sbjct: 203 VAVDSVFEQNEMIDVVAVTKGHGFEG 228
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 78/114 (68%), Positives = 95/114 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W TK+LPRKTH+GLRKVACIG WHP+ V ++VARAGQ GYHHRT +N KIYR+G
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGPWHPAHVMWSVARAGQNGYHHRTSINHKIYRVG 286
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TK+LPRKTH+GLRKVACIG WHP+ V ++VARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKRLPRKTHRGLRKVACIGPWHPAHVMWSVARAGQNGYHHRTSINHKIYRVGKA 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ +A+T++D T+K+I PMGGF YG VNNDF+M+KG G KKRV+TLRK L
Sbjct: 289 GDEASAATNFDRTKKTINPMGGFVQYGNVNNDFIMVKGSIPGTKKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVTLKWIDTASKFGKGR 369
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L+ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID + VTK
Sbjct: 166 VRKTPLV---QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDVVAVTK 222
Query: 609 GKGFKECVH 617
G GF+ H
Sbjct: 223 GHGFEGVTH 231
>gi|365989292|ref|XP_003671476.1| ribosomal protein L3 [Naumovozyma dairenensis CBS 421]
gi|343770249|emb|CCD26233.1| hypothetical protein NDAI_0H00590 [Naumovozyma dairenensis CBS 421]
Length = 387
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 181/265 (68%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHG +GF P+KR+ RG+VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKFEQPRHGHLGFLPRKRAVSIRGRVKSFPKDDQSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAV++++TP +V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVSVVDTPALVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + I ++L +++KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAE--IERELARISKYASVVRVLVHTQIRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQLNGGS+A+K+ WAR+H E+ +
Sbjct: 172 ----------------------------AQKKAHLAEIQLNGGSIAEKVQWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID + VTKG GF+G
Sbjct: 204 SVDSVFEQNEMIDVVAVTKGHGFEG 228
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 101/125 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+A+K+ WAR+H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSIAEKVQWAREHFEKTVSVDSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ+GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQRGYHHRTSINHKVYRVGKGEDES 292
Query: 435 DGKVS 439
+G S
Sbjct: 293 NGSTS 297
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQRGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
++N ST +D T+K+ITPMGGF YGEV NDF+M+KG G +KRV+TLRK L
Sbjct: 289 EDESNGSTSFDRTKKTITPMGGFVSYGEVKNDFVMVKGSIPGTRKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA + E+ L A K R
Sbjct: 348 RKA-VEEVSLKWIDTASKFGKGR 369
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+A+K+ WAR+H E+ + V VF Q+EMID +
Sbjct: 159 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSIAEKVQWAREHFEKTVSVDSVFEQNEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|402869396|ref|XP_003898748.1| PREDICTED: 60S ribosomal protein L3-like [Papio anubis]
Length = 327
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 119/154 (77%), Positives = 140/154 (90%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAK 192
W+KS++KAFTK KKWQD+ GKK + +D M K
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKK 155
>gi|384248786|gb|EIE22269.1| ribosomal protein L3 component of cytosolic 80S ribosome and 60S
large subunit [Coccomyxa subellipsoidea C-169]
Length = 390
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/265 (52%), Positives = 182/265 (68%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF PKKR R +GK+K FP+DDP+KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPKKRCRRGKGKIKSFPRDDPSKPCHLTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPM++VGV+GYV T GLRS TVWAEHLS E +R+FYKN
Sbjct: 62 KPGSKLHKKETAEAVTIIETPPMIVVGVVGYVITATGLRSLNTVWAEHLSNEVKRKFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+K+++KAF + +KK+ D GKKTI ++L ++ K C VIRV+AHT
Sbjct: 122 WFKAKKKAFHRYAKKYTD--GKKTIEEELNQLKKNCSVIRVLAHT--------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+ + QKKAH+ EIQ+NGGS+ DK+ +A Q E+P+
Sbjct: 165 ---------------------QITKIGYGQKKAHMSEIQINGGSIEDKVDFAYQLFEKPV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F +EMID I +TKG+G +G
Sbjct: 204 TVDSIFQANEMIDTIAITKGRGTEG 228
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 94/114 (82%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH+ EIQ+NGGS+ DK+ +A Q E+P+ V +F +EMID I +TKG+G +GV +R
Sbjct: 173 QKKAHMSEIQINGGSIEDKVDFAYQLFEKPVTVDSIFQANEMIDTIAITKGRGTEGVVTR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ G+HHRTE+NKK+Y++G
Sbjct: 233 WGVTRLPRKTHRGLRKVACIGAWHPARVSWTVARAGQHGFHHRTEMNKKVYKIG 286
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 98/151 (64%), Gaps = 9/151 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ G+HHRTE+ KK
Sbjct: 225 GTEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSWTVARAGQHGFHHRTEM---NKK 281
Query: 496 YLSMVIKNN----ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K A+T+YD+T K ITPMGGFPHYG +N D++M+KG G KKR ITLR+
Sbjct: 282 VYKIGKKGEESHKATTEYDVTNKEITPMGGFPHYGMINEDYIMLKGAVPGTKKRCITLRR 341
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
L + + L EI+L + K R
Sbjct: 342 S--LVAQTSRTALEEIKLKFIDTSSKFGHGR 370
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++ + QKKAH+ EIQ+NGGS+ DK+ +A Q E+P+ V +F +EMID I
Sbjct: 159 RVLAHTQITKIGYGQKKAHMSEIQINGGSIEDKVDFAYQLFEKPVTVDSIFQANEMIDTI 218
Query: 605 GVTKGKGFKECV 616
+TKG+G + V
Sbjct: 219 AITKGRGTEGVV 230
>gi|443896762|dbj|GAC74105.1| inorganic phosphate transporter [Pseudozyma antarctica T-34]
Length = 525
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/251 (54%), Positives = 173/251 (68%), Gaps = 38/251 (15%)
Query: 69 FPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIG 128
FPKDDP KPVHLTA IGYKAGMTHIVR+ DRPGSK++KKEIVEAVT++ETPPMV VGV+G
Sbjct: 166 FPKDDPKKPVHLTAMIGYKAGMTHIVRDLDRPGSKMHKKEIVEAVTVIETPPMVAVGVVG 225
Query: 129 YVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLR 188
YVETP GLRS TVWAEHLS E +RRFYKNWY+S++KAFTK +KK + G +I+++L
Sbjct: 226 YVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYRSKKKAFTKYAKKHSENNGS-SISRELE 284
Query: 189 KMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQ 248
++ KYC V+RV+AHTQ ++ L +Q
Sbjct: 285 RIKKYCTVVRVLAHTQVRKTGL------------------------------------KQ 308
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAM 308
KK+HLMEIQ+NGGSVADK+ +A++H E+ V VF Q+E+ID I VTKG G++G + A
Sbjct: 309 KKSHLMEIQINGGSVADKVDFAKEHFEKTFDVKSVFEQNEIIDVIAVTKGHGYEG-VTAR 367
Query: 309 KLLKKRQKKAH 319
KK +K H
Sbjct: 368 WGTKKLPRKTH 378
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKK+HLMEIQ+NGGSVADK+ +A++H E+ V VF Q+E+ID I VTKG G++GVT+
Sbjct: 307 KQKKSHLMEIQINGGSVADKVDFAKEHFEKTFDVKSVFEQNEIIDVIAVTKGHGYEGVTA 366
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTH+GLRK+ACIGAWHP+ V FTVAR+GQ GYHHRTE+ KKIYR+ G
Sbjct: 367 RWGTKKLPRKTHRGLRKIACIGAWHPANVMFTVARSGQDGYHHRTEIGKKIYRISNG 423
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 91/116 (78%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTH+GLRK+ACIGAWHP+ V FTVAR+GQ GYHHRTE+ +
Sbjct: 360 GYEGVTARWGTKKLPRKTHRGLRKIACIGAWHPANVMFTVARSGQDGYHHRTEIGKKIYR 419
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K + STD+D TEK+ITP+GGFPHYG V NDF+MIKG C G KKRV+TLRK
Sbjct: 420 ISNGEDKTSGSTDFDTTEKTITPLGGFPHYGLVKNDFVMIKGSCPGVKKRVLTLRK 475
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKK+HLMEIQ+NGGSVADK+ +A++H E+ V VF Q+E+ID I
Sbjct: 294 RVLAHTQVRKTGLKQKKSHLMEIQINGGSVADKVDFAKEHFEKTFDVKSVFEQNEIIDVI 353
Query: 605 GVTKGKGFK 613
VTKG G++
Sbjct: 354 AVTKGHGYE 362
>gi|124802670|ref|XP_001347556.1| 60S ribosomal protein L3, putative [Plasmodium falciparum 3D7]
gi|23495138|gb|AAN35469.1| 60S ribosomal protein L3, putative [Plasmodium falciparum 3D7]
Length = 386
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/281 (49%), Positives = 179/281 (63%), Gaps = 42/281 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR R RGK++ FPKDD KP H TAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEA TI+E PMV+VG++GY ETP GLR TVWA H+S E RRR+YKN
Sbjct: 62 KPGSKLHKKEIVEACTIIECAPMVVVGIVGYRETPKGLRILSTVWANHVSDEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS +KAFTK+ + + T L+++ KYC V+R I HTQ + L
Sbjct: 122 WYKSEKKAFTKSL-----NVPEATKNCLLKRIEKYCTVLRAICHTQPSKTPL-------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
R KKAH+ME+Q+NGGS+ +K+ + ++ LE+ +
Sbjct: 169 ----------------------------RMKKAHIMEVQINGGSMKEKLEFVKEMLEKNL 200
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
PV VF +EMID I VTKG G KG +++ +K+ +K H
Sbjct: 201 PVSTVFNPNEMIDVISVTKGHGTKG-VVSRYGVKRLPRKTH 240
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 93/115 (80%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
R KKAH+ME+Q+NGGS+ +K+ + ++ LE+ +PV VF +EMID I VTKG G KGV S
Sbjct: 169 RMKKAHIMEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVVS 228
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
R+ K+LPRKTH+GLRKVACIGAWHP+RVQF + R GQKGY HRTE NKKIYR+G
Sbjct: 229 RYGVKRLPRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTERNKKIYRIG 283
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 89/119 (74%), Gaps = 6/119 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V SR+ K+LPRKTH+GLRKVACIGAWHP+RVQF + R GQKGY HRTE KK
Sbjct: 222 GTKGVVSRYGVKRLPRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTER---NKK 278
Query: 496 YLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ + KN+ASTD D+TEK ITPMGGFPHYG VN DFL++KGC G KKR ITLRK
Sbjct: 279 IYRIGLKTDKNSASTDADITEKKITPMGGFPHYGVVNEDFLLLKGCVAGTKKRPITLRK 337
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
R KKAH+ME+Q+NGGS+ +K+ + ++ LE+ +PV VF +EMID I VTKG G K V
Sbjct: 169 RMKKAHIMEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVV 227
>gi|326437430|gb|EGD83000.1| 60S ribosomal protein L3 [Salpingoeca sp. ATCC 50818]
Length = 398
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 182/265 (68%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF PKKR+ HRG+V+ FP+D+ HLTAFIGYKAGMTHIVRE D
Sbjct: 2 SHRKFRAPRHGSLGFLPKKRTKHHRGRVRSFPRDNKEDKPHLTAFIGYKAGMTHIVREMD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GSK +KKE+VEAVT++ETPPMV VG++GYVETP GLR TV+A ++S+ C RRFYKN
Sbjct: 62 RTGSKAHKKEVVEAVTVVETPPMVGVGIVGYVETPRGLRQLTTVFAGNMSETCMRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+ KS++K F+K + + + GKK LR++AKYC VIRVIAHT+
Sbjct: 122 YVKSKKKQFSKYFARLKTEEGKKNFEDQLRRLAKYCTVIRVIAHTK-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+ +L RQKKAH+MEIQ+NGG+ A+K+A+A+ LEQ I
Sbjct: 168 ----------------------IDVLNLRQKKAHIMEIQVNGGTPAEKVAFAKGLLEQDI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PVG VF QDE ID +G +KG+GF+G
Sbjct: 206 PVGTVFVQDENIDVLGASKGRGFEG 230
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/135 (66%), Positives = 109/135 (80%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
+ +L RQKKAH+MEIQ+NGG+ A+K+A+A+ LEQ IPVG VF QDE ID +G +KG+G
Sbjct: 168 IDVLNLRQKKAHIMEIQVNGGTPAEKVAFAKGLLEQDIPVGTVFVQDENIDVLGASKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F+GVT RW TK+LPRKTHKGLRKVACIGAWHP+ VQ++VARAGQ GYHHRTE+NKKIY +
Sbjct: 228 FEGVTHRWGTKRLPRKTHKGLRKVACIGAWHPANVQYSVARAGQNGYHHRTEMNKKIYMV 287
Query: 428 GAGIHTKDGKVSVTS 442
G G H D VT
Sbjct: 288 GKGYHKDDKGRYVTD 302
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 87/120 (72%), Gaps = 8/120 (6%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL----FLCKKK 495
VT RW TK+LPRKTHKGLRKVACIGAWHP+ VQ++VARAGQ GYHHRTE+ ++ K
Sbjct: 231 VTHRWGTKRLPRKTHKGLRKVACIGAWHPANVQYSVARAGQNGYHHRTEMNKKIYMVGKG 290
Query: 496 Y----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y + +NA+ D T+K ITPMGGFP YG V DFL++KG +G KKR +TLRK
Sbjct: 291 YHKDDKGRYVTDNATVAADPTKKCITPMGGFPRYGIVKQDFLIVKGSTVGVKKRALTLRK 350
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI K+ +L RQKKAH+MEIQ+NGG+ A+K+A+A+ LEQ IPVG VF QDE ID +
Sbjct: 161 RVIAHTKIDVLNLRQKKAHIMEIQVNGGTPAEKVAFAKGLLEQDIPVGTVFVQDENIDVL 220
Query: 605 GVTKGKGFKECVH 617
G +KG+GF+ H
Sbjct: 221 GASKGRGFEGVTH 233
>gi|339247731|ref|XP_003375499.1| putative ribosomal protein L3 [Trichinella spiralis]
gi|316971139|gb|EFV54965.1| putative ribosomal protein L3 [Trichinella spiralis]
Length = 180
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/169 (76%), Positives = 143/169 (84%), Gaps = 7/169 (4%)
Query: 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREA 97
SHRKFSAPRHG +GF PKKRS RHRGKVK FPKDDP KPVHLTAFIGYKAGMTHIVRE
Sbjct: 17 VSHRKFSAPRHGHVGFLPKKRSKRHRGKVKSFPKDDPQKPVHLTAFIGYKAGMTHIVREV 76
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVG--VIGYVETPHGLRSFKTVWAEHLSQECRRRF 155
D+PGSKINKK++VEAVT+LETPPMVIVG V+GY+ETP GLR+FKT+WAEHLS +C+RR
Sbjct: 77 DKPGSKINKKDVVEAVTVLETPPMVIVGKCVVGYIETPQGLRAFKTIWAEHLSDDCKRR- 135
Query: 156 YKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ 204
YK +KAFTKASKKWQD+ G K I D +M KYCKVIRVIAHTQ
Sbjct: 136 ----YKCERKAFTKASKKWQDEAGVKEIQTDFARMIKYCKVIRVIAHTQ 180
>gi|296424388|ref|XP_002841730.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637978|emb|CAZ85921.1| unnamed protein product [Tuber melanosporum]
Length = 640
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/245 (53%), Positives = 167/245 (68%), Gaps = 38/245 (15%)
Query: 59 SARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILET 118
SA+ RGKVK FPKDD KPVHLTA +GYKAGMT IVR+ DRPG+K++KKE+VEAVT++ET
Sbjct: 272 SAQTRGKVKSFPKDDTKKPVHLTAALGYKAGMTTIVRDLDRPGAKMHKKEVVEAVTVIET 331
Query: 119 PPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKL 178
PPMVIVGV+GYVETP GLRS TVWAEHLS + +RRFYKNWYKS++KAFTK +K+ +
Sbjct: 332 PPMVIVGVVGYVETPRGLRSLTTVWAEHLSDDLKRRFYKNWYKSKKKAFTKYAKRHAGE- 390
Query: 179 GKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESH 238
K I+ +L ++ KYC V+RV+AH+Q ++ L
Sbjct: 391 -GKAISHELGRIKKYCTVVRVLAHSQIRKTPL---------------------------- 421
Query: 239 VQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 298
+QKK HLMEIQ+NGGS+ DK+ +A H E+ + + +F QDEMID I VTKG
Sbjct: 422 --------KQKKTHLMEIQVNGGSITDKVDFAFSHFEKEVTISSIFEQDEMIDVIAVTKG 473
Query: 299 KGFKG 303
GF G
Sbjct: 474 HGFNG 478
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 101/126 (80%), Gaps = 2/126 (1%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKK HLMEIQ+NGGS+ DK+ +A H E+ + + +F QDEMID I VTKG GF GVTS
Sbjct: 422 KQKKTHLMEIQVNGGSITDKVDFAFSHFEKEVTISSIFEQDEMIDVIAVTKGHGFNGVTS 481
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G+G T
Sbjct: 482 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKIYRIGSG--T 539
Query: 434 KDGKVS 439
+G S
Sbjct: 540 DEGNAS 545
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 98/129 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + + S
Sbjct: 479 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKIYRIGSG 538
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NAST++D+T+K+ITP+GGFP YGE+ NDF+M+KG G KKRV+TLRK + +
Sbjct: 539 TDEGNASTEFDITKKTITPLGGFPRYGEIKNDFVMVKGSVPGVKKRVMTLRKSMFIHTSR 598
Query: 560 KKAHLMEIQ 568
+ +E++
Sbjct: 599 RSLEKVELK 607
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKK HLMEIQ+NGGS+ DK+ +A H E+ + + +F QDEMID I
Sbjct: 409 RVLAHSQIRKTPLKQKKTHLMEIQVNGGSITDKVDFAFSHFEKEVTISSIFEQDEMIDVI 468
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 469 AVTKGHGF 476
>gi|213515418|ref|NP_001133147.1| ribosomal protein L3-like [Salmo salar]
gi|197632147|gb|ACH70797.1| ribosomal protein L3-like [Salmo salar]
Length = 409
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/265 (55%), Positives = 188/265 (70%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG MGF P KRS +HRGK + +P+DDP++PVHLTAF+GYKAGMTHI+RE
Sbjct: 2 SHRKFHAPRHGHMGFLPCKRSKKHRGKPRSWPQDDPSQPVHLTAFMGYKAGMTHILREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R G K K+E VEAVTI+ETPP+++VGV+GY++T GLRSFKT++AEHLS EC+RRFYK+
Sbjct: 62 RTGLKQAKRESVEAVTIIETPPVMVVGVVGYIDTVRGLRSFKTIFAEHLSDECKRRFYKS 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KKW D+ GKK + +D M KYC IRV+ HT
Sbjct: 122 WYKSKKKAFTKYAKKWTDESGKKQLEKDFNNMKKYCTSIRVLIHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++LL + KKAH+ME+QLNGG++++K+ W ++ LEQP+
Sbjct: 167 ---------------------QIRLLPLKAKKAHIMEVQLNGGTISEKVDWVKEKLEQPV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF QDEMID IGVTKG G KG
Sbjct: 206 PVSSVFYQDEMIDVIGVTKGHGMKG 230
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 114/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++LL + KKAH+ME+QLNGG++++K+ W ++ LEQP+PV VF QDEMID IGVTKG G
Sbjct: 168 IRLLPLKAKKAHIMEVQLNGGTISEKVDWVKEKLEQPVPVSSVFYQDEMIDVIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRW KKLPRKTHKGLRKVACIGAWHPSRV +T+ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 MKGVTSRWGVKKLPRKTHKGLRKVACIGAWHPSRVGYTIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G GIH +DGKV
Sbjct: 288 GKGIHVQDGKV 298
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 109/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRW KKLPRKTHKGLRKVACIGAWHPSRV +T+ARAGQKGYHHRTE
Sbjct: 221 GVTKGHGMKGVTSRWGVKKLPRKTHKGLRKVACIGAWHPSRVGYTIARAGQKGYHHRTE- 279
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
L KK Y VIKNNAST+YD T+K+ITPMGGFPHYG+V NDFLM+KGC +
Sbjct: 280 -LNKKIYRIGKGIHVQDGKVIKNNASTNYDTTQKTITPMGGFPHYGDVKNDFLMLKGCVI 338
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G +KRV+TLRK L+ +K ++++
Sbjct: 339 GCRKRVLTLRKSMLVHTSRKSKETIDLKF 367
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RV+ +++LL + KKAH+ME+QLNGG++++K+ W ++ LE
Sbjct: 145 QLEKDFNNMKKYCTSI--RVLIHTQIRLLPLKAKKAHIMEVQLNGGTISEKVDWVKEKLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
QP+PV VF QDEMID IGVTKG G K
Sbjct: 203 QPVPVSSVFYQDEMIDVIGVTKGHGMK 229
>gi|7159730|emb|CAB76201.1| ribosomal protein L3 [Homo sapiens]
Length = 343
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/211 (61%), Positives = 155/211 (73%), Gaps = 36/211 (17%)
Query: 93 IVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECR 152
IVRE DRPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+
Sbjct: 1 IVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECK 60
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
RRFYKNW+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 61 RRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------- 112
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+
Sbjct: 113 ----------------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARE 144
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 145 RLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 175
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 113 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 172
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 173 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 232
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 233 GQGYLIKDGKL 243
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 166 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 225
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 226 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 285
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 286 KKRVLTLRKSLLVQTKRRALEKIDLKF 312
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 90 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 147
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 148 QQVPVNQVFGQDEMIDVIGVTKGKGYK 174
>gi|357155087|ref|XP_003577004.1| PREDICTED: cytochrome P450 89A2-like [Brachypodium distachyon]
Length = 836
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 170/246 (69%), Gaps = 35/246 (14%)
Query: 58 RSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILE 117
R +RHRGKVK FP+DD K HLTAF+GYKAGMTHIVRE ++PGSK++KKE EAVTI+E
Sbjct: 468 RCSRHRGKVKAFPRDDQQKSCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIE 527
Query: 118 TPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDK 177
TPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKNW KS++KAFTK + K+
Sbjct: 528 TPPIVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDTD 587
Query: 178 LGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHES 237
GKK I L KM KY V+RVIAHTQ +
Sbjct: 588 AGKKEIQLQLEKMKKYASVVRVIAHTQIR------------------------------- 616
Query: 238 HVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 297
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTK
Sbjct: 617 --KMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMIDIIGVTK 672
Query: 298 GKGFKG 303
GKG++G
Sbjct: 673 GKGYEG 678
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/124 (65%), Positives = 102/124 (82%), Gaps = 1/124 (0%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG++GV +
Sbjct: 622 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMIDIIGVTKGKGYEGVVT 681
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-AGIH 432
RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G G
Sbjct: 682 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 741
Query: 433 TKDG 436
T D
Sbjct: 742 THDA 745
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 101/136 (74%), Gaps = 6/136 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 669 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 727
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 728 -MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 786
Query: 547 ITLRKMKLLKKRQKKA 562
+TLR+ LLK+ + A
Sbjct: 787 VTLRQ-SLLKQTSRLA 801
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTK
Sbjct: 615 IRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEVPVEAVFQKDEMIDIIGVTK 672
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 673 GKGYEGVV 680
>gi|414587224|tpg|DAA37795.1| TPA: hypothetical protein ZEAMMB73_342493 [Zea mays]
Length = 429
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 170/245 (69%), Gaps = 35/245 (14%)
Query: 59 SARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILET 118
S+ RG + FP+DDP KP HLTAF+GYKAGMTHIVRE ++PGSK++KKE EAVTI+ET
Sbjct: 62 SSSTRGTAQSFPRDDPKKPCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIET 121
Query: 119 PPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKL 178
PP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKNW KS++KAFTK + K+++
Sbjct: 122 PPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYENDA 181
Query: 179 GKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESH 238
GKK I L KM KY VIRVIAHTQ +
Sbjct: 182 GKKEIQLQLEKMKKYASVIRVIAHTQIR-------------------------------- 209
Query: 239 VQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 298
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKG
Sbjct: 210 -KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKG 266
Query: 299 KGFKG 303
KG++G
Sbjct: 267 KGYEG 271
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 103/124 (83%), Gaps = 1/124 (0%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG++GV +
Sbjct: 215 KQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKGYEGVVT 274
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-AGIH 432
RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G AG
Sbjct: 275 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKAGQE 334
Query: 433 TKDG 436
T D
Sbjct: 335 THDA 338
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 262 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 320
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 321 -MNKKVYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRV 379
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 380 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 413
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTK
Sbjct: 208 IRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTK 265
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 266 GKGYEGVV 273
>gi|156081997|ref|XP_001608491.1| ribosomal protein L3 [Plasmodium vivax Sal-1]
gi|148801062|gb|EDL42467.1| ribosomal protein L3, putative [Plasmodium vivax]
Length = 386
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/281 (49%), Positives = 179/281 (63%), Gaps = 42/281 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR R RGK++ FPKDD KP H TAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEA TI+E PMV+VG++GY ETP GLR TVWA H+S E RRR+YKN
Sbjct: 62 KPGSKLHKKEIVEACTIIECAPMVVVGMVGYRETPKGLRILTTVWANHVSDEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS +KAFTKA KL K+++ +++ KYC V+R + HTQ + L
Sbjct: 122 WYKSDKKAFTKAL--MVPKLTKESL---YKRIEKYCTVLRAVCHTQPSKTPLS------- 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+MEIQ+NGG + DKI + ++ LE+ +
Sbjct: 170 -----------------------------MKKAHIMEIQINGGGMKDKIDFLKELLEKNL 200
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
PV VF +EMID I VTKG G KG +++ +K+ +K H
Sbjct: 201 PVSNVFNTNEMIDVISVTKGHGTKG-VVSRYGVKRLPRKTH 240
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 91/113 (80%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+MEIQ+NGG + DKI + ++ LE+ +PV VF +EMID I VTKG G KGV SR+
Sbjct: 171 KKAHIMEIQINGGGMKDKIDFLKELLEKNLPVSNVFNTNEMIDVISVTKGHGTKGVVSRY 230
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
K+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE NKKIYR+G
Sbjct: 231 GVKRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTERNKKIYRIG 283
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 100/150 (66%), Gaps = 8/150 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V SR+ K+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE KK
Sbjct: 222 GTKGVVSRYGVKRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTER---NKK 278
Query: 496 YLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ + KNNASTD D+TEK ITPMGGFPHYG VN DF+++KGC G KKR ITLRK
Sbjct: 279 IYRIGLKKDKNNASTDADITEKKITPMGGFPHYGVVNEDFILLKGCVAGTKKRPITLRKT 338
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
L + + L ++ L + KI R
Sbjct: 339 --LVPQVSRDALAQVSLKFIDTSSKIGHGR 366
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+MEIQ+NGG + DKI + ++ LE+ +PV VF +EMID I VTKG G K V
Sbjct: 171 KKAHIMEIQINGGGMKDKIDFLKELLEKNLPVSNVFNTNEMIDVISVTKGHGTKGVV 227
>gi|298705189|emb|CBJ28620.1| Ribosomal protein L3 [Ectocarpus siliculosus]
Length = 423
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 144/271 (53%), Positives = 184/271 (67%), Gaps = 38/271 (14%)
Query: 33 HRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTH 92
H + SHRKF APR+GS+GF PKKR+ +HRG ++ FPKDD K HLTAF+ YKAGMTH
Sbjct: 29 HTRRTMSHRKFEAPRNGSLGFLPKKRTKKHRGHIRSFPKDDAAKEPHLTAFMAYKAGMTH 88
Query: 93 IVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECR 152
I RE DRPGSK++KKE+VEAVTILETPP+V+VGV+GYVETP GLR+ TVWA HLS EC+
Sbjct: 89 IAREVDRPGSKVHKKEVVEAVTILETPPIVVVGVVGYVETPKGLRTLTTVWAGHLSDECK 148
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
RRFYK+WY S++KAFT+ +KK+ D + I +L ++ +Y +V+RVIAHT
Sbjct: 149 RRFYKHWYTSKKKAFTRYAKKFAD--APQEIDAELGRIKQYAQVVRVIAHT--------- 197
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
Q+ L+K RQKKAH+ EIQ+NGG VA K+ +AR
Sbjct: 198 ---------------------------QVGLVKLRQKKAHICEIQVNGGDVAAKVDFARG 230
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
EQ +PV VFA+DE ID +G +KG G +G
Sbjct: 231 LFEQKVPVDAVFAKDECIDVLGASKGHGTEG 261
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 97/119 (81%)
Query: 310 LLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
L+K RQKKAH+ EIQ+NGG VA K+ +AR EQ +PV VFA+DE ID +G +KG G +
Sbjct: 201 LVKLRQKKAHICEIQVNGGDVAAKVDFARGLFEQKVPVDAVFAKDECIDVLGASKGHGTE 260
Query: 370 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
GV +RW +LPRKTH+GLRKVACIGAWHP+RV F+VARAGQ GYHHRTELNKKIYR+G
Sbjct: 261 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFSVARAGQHGYHHRTELNKKIYRIG 319
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 102/150 (68%), Gaps = 8/150 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V +RW +LPRKTH+GLRKVACIGAWHP+RV F+VARAGQ GYHHRTEL KK
Sbjct: 258 GTEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFSVARAGQHGYHHRTEL---NKK 314
Query: 496 YLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ K + AST+ DLT K ITP+GGFPHYGE+N D+LM+KGC +G KKR ITLRK
Sbjct: 315 IYRIGKKGDVASASTEADLTVKHITPLGGFPHYGEINEDWLMLKGCVIGCKKRCITLRKS 374
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
L ++ HL +++L + K R
Sbjct: 375 --LMSHSRRIHLEQVELKFIDTSSKYGHGR 402
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI ++ L+K RQKKAH+ EIQ+NGG VA K+ +AR EQ +PV VFA+DE ID +
Sbjct: 192 RVIAHTQVGLVKLRQKKAHICEIQVNGGDVAAKVDFARGLFEQKVPVDAVFAKDECIDVL 251
Query: 605 GVTKGKGFKECV 616
G +KG G + V
Sbjct: 252 GASKGHGTEGVV 263
>gi|71984544|ref|NP_001021255.1| Protein RPL-3, isoform c [Caenorhabditis elegans]
gi|51011806|emb|CAH10799.1| Protein RPL-3, isoform c [Caenorhabditis elegans]
Length = 353
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 120/166 (72%), Positives = 140/166 (84%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG MGF PKKRS +RG++K FPKDD +KP+HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTI+ETPPMVI GV GYV+TP G R+ T+WAEHLS+E RRRFY N
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ 204
W KS++KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHTQ
Sbjct: 122 WAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQ 167
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 107/138 (77%), Gaps = 5/138 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT-- 487
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT
Sbjct: 173 GVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTII 232
Query: 488 --ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+++ K L+ KNN ST++DLT+K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 233 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 292
Query: 546 VITLRKMKLLKKRQKKAH 563
+ITLRK L+ + ++ AH
Sbjct: 293 LITLRK-SLITQTKRVAH 309
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 77/89 (86%)
Query: 349 QVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVAR 408
+V A +MID IGVT+G GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVAR
Sbjct: 161 RVIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVAR 220
Query: 409 AGQKGYHHRTELNKKIYRMGAGIHTKDGK 437
AGQKG+HHRT +N KIYR+G T++GK
Sbjct: 221 AGQKGFHHRTIINNKIYRIGKSALTEEGK 249
>gi|226480234|emb|CAX78781.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 215
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 131/223 (58%), Positives = 158/223 (70%), Gaps = 36/223 (16%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF PKKR R RGK K FP+D + P HLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFTPKKRCRRIRGKCKAFPRDRRSLPPHLTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VE VTI+E PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+
Sbjct: 62 RPGSKVHKREVVEPVTIMECPPMVIVGMVGYAPTAKGLRTFKTVWAEHLTEECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTKAS+KW D+ G I +DL+K+ KYC V+R IAHT
Sbjct: 122 WCKSKKKAFTKASRKWADEAGLALINRDLKKIKKYCTVVRAIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGG 261
QM+L+K RQKKAH+MEIQ+N G
Sbjct: 167 ---------------------QMRLMKHRQKKAHIMEIQVNVG 188
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGG 572
+N D IK C R I +M+L+K RQKKAH+MEIQ+N G
Sbjct: 146 INRDLKKIKKYCTVV--RAIAHTQMRLMKHRQKKAHIMEIQVNVG 188
>gi|375332089|gb|AFA52584.1| ribosomal protein L3 superfamily protein [Vaucheria litorea]
Length = 395
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 150/308 (48%), Positives = 202/308 (65%), Gaps = 45/308 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APR GS+GF PKKR+ +H GK++ FP DDP+K HLTAF+ YKAGMTHIVRE +
Sbjct: 2 SHRKFEAPRKGSLGFLPKKRTKKHFGKIRSFPHDDPSKECHLTAFMAYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKE VE VTILE PPMV+VGV+GY ETP+GL++ +VWA HLS ECRRR YKN
Sbjct: 62 RPGSKLHKKETVEPVTILECPPMVVVGVVGYKETPNGLKTVVSVWAGHLSDECRRRMYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+ S++KAFT +KK+ +K + I +DL+K+ K+C+V+RVIAHT
Sbjct: 122 WHSSKKKAFTAYAKKFAEK--PEEIERDLKKIKKHCQVVRVIAHT--------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+ L+K R KKAH+MEIQ+NGG+V +K+ +A+ E+ +
Sbjct: 165 ---------------------QVGLVKLRVKKAHIMEIQVNGGTVEEKVDFAKGLFERHV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH--LMEIQLNG----GSVAD 332
P+ VF++DE ID +G TKG G KG ++A + + +K H L ++ G VA
Sbjct: 204 PISSVFSKDECIDVLGATKGHGTKG-VVARWGVTRLARKTHRGLRKVACIGSWHPARVAF 262
Query: 333 KIAWARQH 340
+A A QH
Sbjct: 263 SVARAGQH 270
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 97/119 (81%)
Query: 310 LLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
L+K R KKAH+MEIQ+NGG+V +K+ +A+ E+ +P+ VF++DE ID +G TKG G K
Sbjct: 168 LVKLRVKKAHIMEIQVNGGTVEEKVDFAKGLFERHVPISSVFSKDECIDVLGATKGHGTK 227
Query: 370 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
GV +RW +L RKTH+GLRKVACIG+WHP+RV F+VARAGQ GYHHRTE+NKKIYR+G
Sbjct: 228 GVVARWGVTRLARKTHRGLRKVACIGSWHPARVAFSVARAGQHGYHHRTEINKKIYRIG 286
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 85/116 (73%), Gaps = 6/116 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V +RW +L RKTH+GLRKVACIG+WHP+RV F+VARAGQ GYHHRTE+ KK
Sbjct: 225 GTKGVVARWGVTRLARKTHRGLRKVACIGSWHPARVAFSVARAGQHGYHHRTEI---NKK 281
Query: 496 YLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
+ K + +T+ DLT KSITPMGGFPHYGE+N D++M+KG +G KKR +T
Sbjct: 282 IYRIGQKGDEGSCTTEADLTVKSITPMGGFPHYGEINEDWIMVKGGLVGTKKRCVT 337
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
E+ D IK C RVI ++ L+K R KKAH+MEIQ+NGG+V +K+ +A+ E
Sbjct: 143 EIERDLKKIKKHCQ--VVRVIAHTQVGLVKLRVKKAHIMEIQVNGGTVEEKVDFAKGLFE 200
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+ +P+ VF++DE ID +G TKG G K V
Sbjct: 201 RHVPISSVFSKDECIDVLGATKGHGTKGVV 230
>gi|221054097|ref|XP_002261796.1| ribosomal protein L3 [Plasmodium knowlesi strain H]
gi|193808256|emb|CAQ38959.1| ribosomal protein L3, putative [Plasmodium knowlesi strain H]
Length = 386
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/281 (49%), Positives = 179/281 (63%), Gaps = 42/281 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR R RGK++ FPKDD KP H TAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEA TI+E PMV+VG++GY ETP GLR TVWA H+S E RRR+YKN
Sbjct: 62 KPGSKLHKKEIVEACTIVECAPMVVVGMVGYRETPKGLRILTTVWANHVSDEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS +KAFTKA KL K+++ +++ KYC V+R + HTQ + L
Sbjct: 122 WYKSDKKAFTKAL--MVPKLTKESL---YKRIEKYCTVLRAVCHTQPSKTPLS------- 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+MEIQ+NGG + DKI + ++ +E+ +
Sbjct: 170 -----------------------------MKKAHIMEIQINGGGMKDKIDFLKELMEKNL 200
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
PV VF +EMID I VTKG G KG +++ +K+ +K H
Sbjct: 201 PVSNVFNTNEMIDVISVTKGHGTKG-VVSRYGVKRLPRKTH 240
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 91/113 (80%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+MEIQ+NGG + DKI + ++ +E+ +PV VF +EMID I VTKG G KGV SR+
Sbjct: 171 KKAHIMEIQINGGGMKDKIDFLKELMEKNLPVSNVFNTNEMIDVISVTKGHGTKGVVSRY 230
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
K+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE NKKIYR+G
Sbjct: 231 GVKRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTERNKKIYRIG 283
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/150 (58%), Positives = 100/150 (66%), Gaps = 8/150 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V SR+ K+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE KK
Sbjct: 222 GTKGVVSRYGVKRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTER---NKK 278
Query: 496 YLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ + KNNASTD D+TEK ITPMGGFPHYG VN DF+++KGC G KKR ITLRK
Sbjct: 279 IYRIGLKKDKNNASTDADITEKKITPMGGFPHYGVVNEDFILLKGCVAGTKKRPITLRKT 338
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
L + + L EI L + KI R
Sbjct: 339 --LVPQVSRDALAEISLKFIDTSSKIGHGR 366
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+MEIQ+NGG + DKI + ++ +E+ +PV VF +EMID I VTKG G K V
Sbjct: 171 KKAHIMEIQINGGGMKDKIDFLKELMEKNLPVSNVFNTNEMIDVISVTKGHGTKGVV 227
>gi|428179797|gb|EKX48666.1| large subunit ribosomal protein L3e, cytoplasmic [Guillardia theta
CCMP2712]
Length = 401
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/266 (54%), Positives = 185/266 (69%), Gaps = 39/266 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR A HRG+V+ FP+DD +KP HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFERPRHGSLGFCPRKRCAHHRGRVRKFPRDDASKPCHLTAFMGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK +KKE VEAVTILE PP+V+VG++GYV+TP GLRS TVWA+HLS E RRR YKN
Sbjct: 62 KPGSKQHKKESVEAVTILEAPPIVVVGIVGYVKTPRGLRSLTTVWAKHLSDEFRRRMYKN 121
Query: 159 WYKSR-QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS+ +KAFTK +K+ ++ K +++ ++ KYC+V+RVIAHTQ
Sbjct: 122 WYKSKSKKAFTKYTKEESER--SKNSDKEIERIKKYCQVVRVIAHTQ------------- 166
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
S VN Q KKAH+MEIQ+NGG+ DK+ +A + EQ
Sbjct: 167 ------LSKVNIGQ-----------------KKAHVMEIQVNGGTTKDKVDFATKLFEQQ 203
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PV VF+Q+EMID IGVTKG G+KG
Sbjct: 204 VPVKSVFSQNEMIDVIGVTKGHGYKG 229
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 99/124 (79%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH+MEIQ+NGG+ DK+ +A + EQ +PV VF+Q+EMID IGVTKG G+KGV SR
Sbjct: 174 QKKAHVMEIQVNGGTTKDKVDFATKLFEQQVPVKSVFSQNEMIDVIGVTKGHGYKGVVSR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
WH KLPRKTH+GLRKV C+G+WHPS V ++VARAGQKGY HRTELNKKIYR+G
Sbjct: 234 WHVTKLPRKTHRGLRKVGCVGSWHPSAVGWSVARAGQKGYFHRTELNKKIYRIGEAARKA 293
Query: 435 DGKV 438
DG +
Sbjct: 294 DGSI 297
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 105/160 (65%), Gaps = 9/160 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V SRWH KLPRKTH+GLRKV C+G+WHPS V ++VARAGQKGY HRTEL
Sbjct: 220 GVTKGHGYKGVVSRWHVTKLPRKTHRGLRKVGCVGSWHPSAVGWSVARAGQKGYFHRTEL 279
Query: 490 F-------LCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
+K + NA+T++DLTEKSITPMGGFPHYG V DF+MIKGCCMG
Sbjct: 280 NKKIYRIGEAARKADGSIEHKNATTEFDLTEKSITPMGGFPHYGAVMEDFVMIKGCCMGT 339
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
KKRVIT+RK LL + + A L EI L + K R
Sbjct: 340 KKRVITMRK-SLLAQTSRNA-LEEISLKFIDTSSKFGHGR 377
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI ++ + QKKAH+MEIQ+NGG+ DK+ +A + EQ +PV VF+Q+EMID I
Sbjct: 160 RVIAHTQLSKVNIGQKKAHVMEIQVNGGTTKDKVDFATKLFEQQVPVKSVFSQNEMIDVI 219
Query: 605 GVTKGKGFKECV 616
GVTKG G+K V
Sbjct: 220 GVTKGHGYKGVV 231
>gi|389582750|dbj|GAB65487.1| ribosomal protein L3 [Plasmodium cynomolgi strain B]
Length = 386
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/281 (49%), Positives = 179/281 (63%), Gaps = 42/281 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR R RGK++ FPKDD KP H TAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEA TI+E PMV+VG++GY ETP GLR TVWA H+S E RRR+YKN
Sbjct: 62 KPGSKLHKKEIVEACTIIECAPMVVVGMVGYRETPKGLRVLTTVWANHVSDEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS +KAFTKA KL K+++ +++ KYC V+R + HTQ + L
Sbjct: 122 WYKSDKKAFTKAL--MVPKLTKESL---YKRIEKYCTVLRAVCHTQPSKTPL-------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+MEIQ+NGG + +KI + ++ LE+ +
Sbjct: 169 ----------------------------TMKKAHIMEIQINGGGMKEKIDFLKELLEKNL 200
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
PV VF +EMID I VTKG G KG +++ +K+ +K H
Sbjct: 201 PVSNVFNTNEMIDVISVTKGHGTKG-VVSRYGVKRLPRKTH 240
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 91/113 (80%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+MEIQ+NGG + +KI + ++ LE+ +PV VF +EMID I VTKG G KGV SR+
Sbjct: 171 KKAHIMEIQINGGGMKEKIDFLKELLEKNLPVSNVFNTNEMIDVISVTKGHGTKGVVSRY 230
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
K+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE NKKIYR+G
Sbjct: 231 GVKRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTERNKKIYRIG 283
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/150 (57%), Positives = 100/150 (66%), Gaps = 8/150 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V SR+ K+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE KK
Sbjct: 222 GTKGVVSRYGVKRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTER---NKK 278
Query: 496 YLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552
+ + KNNASTD D+TEK ITPMGGFPHYG VN DF+++KGC G KKR ITLRK
Sbjct: 279 IYRIGLKKDKNNASTDADITEKKITPMGGFPHYGVVNEDFILLKGCVAGTKKRPITLRKT 338
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
L + + L +I L + KI R
Sbjct: 339 --LVPQVSRDALAQISLKFIDTSSKIGHGR 366
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+MEIQ+NGG + +KI + ++ LE+ +PV VF +EMID I VTKG G K V
Sbjct: 171 KKAHIMEIQINGGGMKEKIDFLKELLEKNLPVSNVFNTNEMIDVISVTKGHGTKGVV 227
>gi|78190599|gb|ABB29621.1| ribosomal protein 3 large subunit [Priapulus caudatus]
Length = 319
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 126/211 (59%), Positives = 156/211 (73%), Gaps = 36/211 (17%)
Query: 93 IVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECR 152
IVRE ++PGSK+NKKE+VEAVTI+ETPP+VIVGVIGY+ETP GLR+ KTV+AEHLS++CR
Sbjct: 1 IVREVEKPGSKLNKKEVVEAVTIIETPPLVIVGVIGYIETPRGLRTLKTVFAEHLSEDCR 60
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
RRFYKNWYK+++KAFTK +KKWQD++GKK I ++ KM KYC VIRV+AHT
Sbjct: 61 RRFYKNWYKAKRKAFTKYAKKWQDEVGKKQIDREFEKMKKYCTVIRVVAHT--------- 111
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
QMKLL+KRQKKAH+MEIQLNGG++A+K+ WA
Sbjct: 112 ---------------------------QMKLLRKRQKKAHIMEIQLNGGTIAEKVQWACD 144
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
HLE+ +P+ VFA DEMID +GVTKG GFKG
Sbjct: 145 HLEKAVPISSVFAADEMIDMVGVTKGHGFKG 175
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/131 (80%), Positives = 119/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL+KRQKKAH+MEIQLNGG++A+K+ WA HLE+ +P+ VFA DEMID +GVTKG G
Sbjct: 113 MKLLRKRQKKAHIMEIQLNGGTIAEKVQWACDHLEKAVPISSVFAADEMIDMVGVTKGHG 172
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWH KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKK+YR+
Sbjct: 173 FKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKVYRI 232
Query: 428 GAGIHTKDGKV 438
GIHTKDGKV
Sbjct: 233 AEGIHTKDGKV 243
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 107/135 (79%), Gaps = 11/135 (8%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWH KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 165 VGVTKGHGFKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 224
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNA+TD+DL++KSITPMGGFPHYGEV NDF+MIKGCC
Sbjct: 225 --INKKVYRIAEGIHTKDGKVIKNNAATDFDLSDKSITPMGGFPHYGEVRNDFIMIKGCC 282
Query: 540 MGPKKRVITLRKMKL 554
MGPKKR+ITLRK L
Sbjct: 283 MGPKKRIITLRKSLL 297
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+++ +F +K C RV+ +MKLL+KRQKKAH+MEIQLNGG++A+K+ WA HLE
Sbjct: 90 QIDREFEKMKKYCTVI--RVVAHTQMKLLRKRQKKAHIMEIQLNGGTIAEKVQWACDHLE 147
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +P+ VFA DEMID +GVTKG GFK
Sbjct: 148 KAVPISSVFAADEMIDMVGVTKGHGFK 174
>gi|254572870|ref|XP_002493544.1| 60S ribosomal protein L3 [Komagataella pastoris GS115]
gi|238033343|emb|CAY71365.1| Protein component of the large (60S) ribosomal subunit
[Komagataella pastoris GS115]
gi|328354631|emb|CCA41028.1| 60S ribosomal protein L3 [Komagataella pastoris CBS 7435]
Length = 388
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 180/265 (67%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF PKKR++ R + K FPKDD +KPV LTAF+GYKAGM+ IVR+ D
Sbjct: 2 SHRKFEAPRHGSLGFLPKKRASSPRARCKAFPKDDKSKPVALTAFMGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+E+VEAV+I++TPP+V+VGV+GYVET GL+S TVWAEHLS + RRRFYKN
Sbjct: 62 RPGSKMHKREVVEAVSIVDTPPLVVVGVVGYVETTSGLKSLTTVWAEHLSDDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++ AF+K S K+ + +I +L ++ KY V+RV+ HTQ ++ L+
Sbjct: 122 WYKSKKVAFSKYSAKYANDPA--SIETELARIKKYASVVRVLVHTQIRKTPLN------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QK+AHL EIQ+NGGS+++K+ WAR H EQ I
Sbjct: 173 -----------------------------QKRAHLAEIQINGGSISEKVDWARDHFEQTI 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+E ID I VTKG GF+G
Sbjct: 204 AVDTVFEQNENIDVIAVTKGHGFEG 228
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 97/122 (79%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QK+AHL EIQ+NGGS+++K+ WAR H EQ I V VF Q+E ID I VTKG GF+GVT R
Sbjct: 173 QKRAHLAEIQINGGSISEKVDWARDHFEQTIAVDTVFEQNENIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ G+HHRT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGFHHRTSINHKIYRVGKGDDES 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 86/112 (76%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ G+HHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGFHHRTSINHKIYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++N ST+YD T+K++TP+GGF YGE+ NDF+MIKG GP KRV+TLRK
Sbjct: 289 DDESNGSTEYDRTKKTVTPLGGFVRYGEIRNDFVMIKGSIPGPVKRVVTLRK 340
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QK+AHL EIQ+NGGS+++K+ WAR H EQ I V VF Q+E ID I
Sbjct: 159 RVLVHTQIRKTPLNQKRAHLAEIQINGGSISEKVDWARDHFEQTIAVDTVFEQNENIDVI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|426354157|ref|XP_004044534.1| PREDICTED: 60S ribosomal protein L3-like isoform 2 [Gorilla gorilla
gorilla]
Length = 351
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/214 (59%), Positives = 152/214 (71%), Gaps = 36/214 (16%)
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTHI+RE DRP SK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S
Sbjct: 1 MTHIMREVDRPASKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISN 60
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
EC+RRFYKNW+KS++KAFTK KKWQD+ KK + +D M KYC VIRVIAHTQ
Sbjct: 61 ECKRRFYKNWHKSKKKAFTKYCKKWQDEDVKKQLEEDFSSMKKYCHVIRVIAHTQ----- 115
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
M+LL RQKKAHLMEIQ+NGG+VA+K+ W
Sbjct: 116 -------------------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDW 144
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
R+ LEQ + V QVF QDEMID IGVTKG G+KG
Sbjct: 145 VRERLEQQVNVNQVFGQDEMIDVIGVTKGNGYKG 178
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 112/131 (85%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ W R+ LEQ + V QVF QDEMID IGVTKG G
Sbjct: 116 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWVRERLEQQVNVNQVFGQDEMIDVIGVTKGNG 175
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLP KTH+GLRKVACIGAWHP+RV F+VARAGQKG HRTE+NKKIY++
Sbjct: 176 YKGVTSRWHTKKLPLKTHRGLRKVACIGAWHPARVAFSVARAGQKGNRHRTEINKKIYKI 235
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 236 GQGYLIKDGKL 246
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 108/147 (73%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ +G VTSRWHTKKLP KTH+GLRKVACIGAWHP+RV F+VARAGQKG HRTE
Sbjct: 169 GVTKGNGYKGVTSRWHTKKLPLKTHRGLRKVACIGAWHPARVAFSVARAGQKGNRHRTEI 228
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTD DL++KS P+GGF HYGEV NDF+M+KGC +G
Sbjct: 229 NKKIYKIGQGYLIKDGKLIKNNASTDSDLSDKSTNPLGGFVHYGEVTNDFVMLKGCVVGT 288
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TL + L++ +++ ++++
Sbjct: 289 KKRVLTLHESLLVQMKRQALEKIDLKF 315
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ W R+ LE
Sbjct: 93 QLEEDFSSMKKYCHVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWVRERLE 150
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V QVF QDEMID IGVTKG G+K
Sbjct: 151 QQVNVNQVFGQDEMIDVIGVTKGNGYK 177
>gi|255071333|ref|XP_002507748.1| ribosomal protein L3 [Micromonas sp. RCC299]
gi|226523023|gb|ACO69006.1| ribosomal protein L3 [Micromonas sp. RCC299]
Length = 385
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 180/265 (67%), Gaps = 39/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR G +GF PKKRS R RGK K FP+DD +K HLTAF+G+KAGMTH+VR+ D
Sbjct: 2 SHRKFEHPRLGHLGFLPKKRSQRARGKCKKFPRDDASKEPHLTAFMGFKAGMTHVVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE +EAVTI+ETP MV+VGV+GYV+TP GLR+ TVWAEHL+ E RRRFYKN
Sbjct: 62 KPGSKLHKKETLEAVTIVETPAMVVVGVVGYVKTPQGLRALNTVWAEHLNDEIRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK +KK+ + TI Q+L + K V+RVIAHTQ +
Sbjct: 122 WFKSKKKAFTKYAKKYTN----GTIQQELDNLRKNADVVRVIAHTQVR------------ 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K+ +QKKAH+MEIQ+NGG A K+ +A + E+ I
Sbjct: 166 -----------------------KVKNLKQKKAHVMEIQVNGGDAAAKVDFAYKFFEKAI 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMIDCI V+KGKGF+G
Sbjct: 203 PVDAVFNKDEMIDCISVSKGKGFEG 227
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 95/115 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGG A K+ +A + E+ IPV VF +DEMIDCI V+KGKGF+GV +
Sbjct: 171 KQKKAHVMEIQVNGGDAAAKVDFAYKFFEKAIPVDAVFNKDEMIDCISVSKGKGFEGVVT 230
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GLRKV CIGAWHP+RV FTVAR GQ GYHHRTE+NKKIYR+G
Sbjct: 231 RWGVTRLPRKTHRGLRKVGCIGAWHPARVAFTVARPGQHGYHHRTEINKKIYRVG 285
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 86/117 (73%), Gaps = 9/117 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V +RW +LPRKTH+GLRKV CIGAWHP+RV FTVAR GQ GYHHRTE+ K +
Sbjct: 228 VVTRWGVTRLPRKTHRGLRKVGCIGAWHPARVAFTVARPGQHGYHHRTEI----NKKIYR 283
Query: 500 VIKNN-----ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
V K A+T++D T+K ITPMGGFPHYG V ND+LMIKG GP+KRVITLR+
Sbjct: 284 VGKEGEDSHKATTEHDATDKDITPMGGFPHYGIVKNDYLMIKGGIAGPRKRVITLRQ 340
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RK+K LK QKKAH+MEIQ+NGG A K+ +A + E+ IPV VF +DEMI
Sbjct: 157 RVIAHTQVRKVKNLK--QKKAHVMEIQVNGGDAAAKVDFAYKFFEKAIPVDAVFNKDEMI 214
Query: 602 DCIGVTKGKGFKECV 616
DCI V+KGKGF+ V
Sbjct: 215 DCISVSKGKGFEGVV 229
>gi|406605586|emb|CCH43019.1| 60S ribosomal protein L3 [Wickerhamomyces ciferrii]
Length = 389
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 187/265 (70%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A RG+VK FP+DD TKPVHLTA +GYKAGM+ IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAASIRGRVKSFPRDDKTKPVHLTATLGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKMHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK + K+ +K G++ I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAAKYANKNGEQ-IERELARITKYATVVRVLVHTQVKKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGS+ADK+ WAR+H E+ +
Sbjct: 173 ----------------------------VQKKAHLAEIQVNGGSIADKVNWAREHFEKTV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V V Q+E ID I VTKG GF+G
Sbjct: 205 SVDSVIEQNENIDVIAVTKGHGFEG 229
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 94/116 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS+ADK+ WAR+H E+ + V V Q+E ID I VTKG GF+GVT R
Sbjct: 174 QKKAHLAEIQVNGGSIADKVNWAREHFEKTVSVDSVIEQNENIDVIAVTKGHGFEGVTHR 233
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W T +LPRKTH+GLRKVACIGAWHPS VQ+TVARAGQ GYH RT +N K+YR+G G
Sbjct: 234 WGTTRLPRKTHRGLRKVACIGAWHPSHVQWTVARAGQNGYHSRTSINHKVYRVGRG 289
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 87/112 (77%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW T +LPRKTH+GLRKVACIGAWHPS VQ+TVARAGQ GYH RT + +
Sbjct: 230 VTHRWGTTRLPRKTHRGLRKVACIGAWHPSHVQWTVARAGQNGYHSRTSINHKVYRVGRG 289
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NA+T++D T+K+ITP+GGF HYGEV NDF+++KG GPKKRV+TLRK
Sbjct: 290 DDEANAATEFDRTKKTITPLGGFVHYGEVKNDFVILKGSIPGPKKRVVTLRK 341
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 49/73 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGS+ADK+ WAR+H E+ + V V Q+E ID I
Sbjct: 160 RVLVHTQVKKTPLVQKKAHLAEIQVNGGSIADKVNWAREHFEKTVSVDSVIEQNENIDVI 219
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 220 AVTKGHGFEGVTH 232
>gi|284073162|gb|ADB77820.1| 60S ribosomal protein L3 [Mesostigma viride]
Length = 225
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 173/262 (66%), Gaps = 38/262 (14%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
KF R GS+GF PKKR+ R RGKVK FPKDD T+ HLTAF+G+KAGMTHI+RE D+PG
Sbjct: 1 KFEHARCGSLGFLPKKRAKRMRGKVKSFPKDDRTQKPHLTAFMGFKAGMTHILREVDKPG 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
SK++KKE EAVTI+E P MV+VGV GY +T GL++ TVWA+HL+ E +RRFYKNWYK
Sbjct: 61 SKLHKKETCEAVTIIEVPAMVVVGVTGYAKTTGGLKTIGTVWAKHLNDEVKRRFYKNWYK 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
S++KAFTK +KK ++ K + + L ++ KY VIR++AHTQ +
Sbjct: 121 SKKKAFTKYAKKVEN---DKELQESLERLKKYSSVIRILAHTQVR--------------- 162
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
K+ +QKKAHLMEIQ+NGG V K+ +A E+ + V
Sbjct: 163 --------------------KVPNLKQKKAHLMEIQVNGGEVPAKVDFAYDLFEKAVNVD 202
Query: 282 QVFAQDEMIDCIGVTKGKGFKG 303
+FAQ+EMID IGVTKGKG++G
Sbjct: 203 AIFAQNEMIDIIGVTKGKGYQG 224
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGV 371
+QKKAHLMEIQ+NGG V K+ +A E+ + V +FAQ+EMID IGVTKGKG++GV
Sbjct: 168 KQKKAHLMEIQVNGGEVPAKVDFAYDLFEKAVNVDAIFAQNEMIDIIGVTKGKGYQGV 225
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+QKKAHLMEIQ+NGG V K+ +A E+ + V +FAQ+EMID IGVTKGKG++
Sbjct: 168 KQKKAHLMEIQVNGGEVPAKVDFAYDLFEKAVNVDAIFAQNEMIDIIGVTKGKGYQ 223
>gi|399215964|emb|CCF72652.1| unnamed protein product [Babesia microti strain RI]
Length = 416
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 134/291 (46%), Positives = 174/291 (59%), Gaps = 67/291 (23%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR R RGK++ FPKDD +KP HL AF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFEHPRRGSLGFLPRKRCRRQRGKIRSFPKDDQSKPTHLCAFMGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE+VEAVTI+E PPM++VG++GY+E+ GLR TVWA HLS EC+RRFYKN
Sbjct: 62 KPGSKLHKKEVVEAVTIIECPPMIVVGLVGYIES-RGLRVLSTVWAGHLSDECKRRFYKN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK SKK+ + +L ++ YC V+R I HTQ + S+
Sbjct: 121 WYKSKKKAFTKYSKKFIT----TRMESELARIKNYCTVVRAICHTQPSKTSIG------- 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADK------------ 266
+K+H+MEIQ+NGG+VA+K
Sbjct: 170 -----------------------------LRKSHIMEIQVNGGTVAEKWQPVRPVVRKTM 200
Query: 267 --------------IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ + EQP+P+ VF ++EMID I VTKG G KG
Sbjct: 201 KLPNHTTYKTKLTQVDFVVSLFEQPVPISTVFEENEMIDTIAVTKGHGVKG 251
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 133/240 (55%), Gaps = 51/240 (21%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPI-PVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K+H+MEIQ+NGG+VA+K W QP+ PV +
Sbjct: 171 RKSHIMEIQVNGGTVAEK--W------QPVRPVVR------------------------- 197
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQK-GYHHRTELNKKIYRMGAGIHT 433
T KLP T + ++V F V+ Q E N+ I + +
Sbjct: 198 -KTMKLPNHTTYKTKL---------TQVDFVVSLFEQPVPISTVFEENEMIDTIA--VTK 245
Query: 434 KDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCK 493
G V SR+ +LPRKTH+GLRKVACIGAWHP+RVQF VARAGQKGY HRTE K
Sbjct: 246 GHGVKGVVSRYGVTRLPRKTHRGLRKVACIGAWHPARVQFQVARAGQKGYFHRTE--RNK 303
Query: 494 KKYLSMVIKN--NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
K Y + +N NASTD D+TEK ITPMGGFPHYG V DFL++KGC G +KR ITLRK
Sbjct: 304 KIYRIGLGRNPRNASTDSDVTEKQITPMGGFPHYGMVREDFLLVKGCIAGCRKRPITLRK 363
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 37/118 (31%)
Query: 526 GEVNNDFLMIKGCC-MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADK------- 577
+ N +++ C P K I LRK +H+MEIQ+NGG+VA+K
Sbjct: 146 ARIKNYCTVVRAICHTQPSKTSIGLRK----------SHIMEIQVNGGTVAEKWQPVRPV 195
Query: 578 -------------------IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+ + EQP+P+ VF ++EMID I VTKG G K V
Sbjct: 196 VRKTMKLPNHTTYKTKLTQVDFVVSLFEQPVPISTVFEENEMIDTIAVTKGHGVKGVV 253
>gi|258565167|ref|XP_002583328.1| 60S ribosomal protein L3 [Uncinocarpus reesii 1704]
gi|237907029|gb|EEP81430.1| 60S ribosomal protein L3 [Uncinocarpus reesii 1704]
Length = 383
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 126/238 (52%), Positives = 163/238 (68%), Gaps = 37/238 (15%)
Query: 66 VKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVG 125
V FPKDDP KPVHLTA +GYKAGMT VR+ +RPG+K++KKEIVEAVT++ETPPM+ VG
Sbjct: 20 VASFPKDDPKKPVHLTAAMGYKAGMTTTVRDLERPGAKMHKKEIVEAVTVVETPPMIAVG 79
Query: 126 VIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQ 185
V+GY+ETP GLRS TVWAEHLS E +RRFYKNWYKS++KAFTK +K + + G ++ +
Sbjct: 80 VVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTKYAKNYSENKG-ASVTR 138
Query: 186 DLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLK 245
+L ++ KYC V+R++AHTQ ++ L
Sbjct: 139 ELERIKKYCTVVRLLAHTQIRKTPL----------------------------------- 163
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+QKKAHLMEIQ+NGGS+ADK+ +A E+PI + +F QDEMID I VTKG GF+G
Sbjct: 164 -KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIEIDSIFEQDEMIDVIAVTKGHGFQG 220
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ +A E+PI + +F QDEMID I VTKG GF+GVTS
Sbjct: 164 KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIEIDSIFEQDEMIDVIAVTKGHGFQGVTS 223
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 224 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKIYRIGKG 280
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 221 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKIYRIGKG 280
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV NDFL+IKG C G KKRV+TLRK
Sbjct: 281 SDEGNASTDFDVSKKQITPMGGFVRYGEVKNDFLIIKGSCPGVKKRVLTLRK 332
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L +QKKAHLMEIQ+NGGS+ADK+ +A E+PI + +F QDEMID I VTK
Sbjct: 158 IRKTPL---KQKKAHLMEIQVNGGSIADKVEFAHGLFEKPIEIDSIFEQDEMIDVIAVTK 214
Query: 609 GKGFK 613
G GF+
Sbjct: 215 GHGFQ 219
>gi|448087719|ref|XP_004196395.1| Piso0_005857 [Millerozyma farinosa CBS 7064]
gi|359377817|emb|CCE86200.1| Piso0_005857 [Millerozyma farinosa CBS 7064]
Length = 389
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/266 (53%), Positives = 186/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KR+A+ RG+VK FPKD +KPV LTAF+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVSLTAFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEA T+++TPP+V+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKVHKREIVEAATVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSEEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD + ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDAT---QVERELARIKKYASVVRVLVHTQIKKTPLS------ 172
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQ+NGGS++DK+ WA++H E+
Sbjct: 173 ------------------------------QKKAHLAEIQVNGGSISDKVDWAKEHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EM+D I VTKG+G +G
Sbjct: 203 VSVDSVFEQNEMVDAIAVTKGRGIEG 228
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/122 (63%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EM+D I VTKG+G +GVT R
Sbjct: 173 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMVDAIAVTKGRGIEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIG+WHP+ VQ++V RAGQ GYHHRT +N K+YR+G+G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGSWHPANVQWSVPRAGQDGYHHRTSINHKVYRVGSGEDES 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 86/112 (76%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIG+WHP+ VQ++V RAGQ GYHHRT + + S
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGSWHPANVQWSVPRAGQDGYHHRTSINHKVYRVGSG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++N +T++D T+K+I PMGGF YGEV NDF+++KG G +KRVITLRK
Sbjct: 289 EDESNGATEFDRTKKTINPMGGFVRYGEVKNDFVLLKGSIPGVRKRVITLRK 340
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EM+D I
Sbjct: 159 RVLVHTQIKKTPLSQKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMVDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG+G + H
Sbjct: 219 AVTKGRGIEGVTH 231
>gi|118389862|ref|XP_001027976.1| ribosomal protein L3 containing protein [Tetrahymena thermophila]
gi|74894030|sp|O96774.1|RL3_TETTH RecName: Full=Ribosomal protein L3
gi|358440087|pdb|4A17|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
gi|358440133|pdb|4A1A|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
gi|358440179|pdb|4A1C|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
gi|358440225|pdb|4A1E|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
gi|3861468|emb|CAA10068.1| ribosomal protein L3 [Tetrahymena thermophila]
gi|89309746|gb|EAS07734.1| ribosomal protein L3 containing protein [Tetrahymena thermophila
SB210]
Length = 391
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/283 (49%), Positives = 183/283 (64%), Gaps = 45/283 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P++R+ HRG+ + FPKDDP+K HLTAF G+KAGMTHI+RE D
Sbjct: 2 SHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GS+ NKKE+VEAVT++E PPM IVGV+GY++TP GLR+ TVWA+ + ++RFYKN
Sbjct: 62 RSGSRHNKKEVVEAVTVIECPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQD--LRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
W S +KAFT K + K AQD L+++ KYC V+RVIAHT
Sbjct: 122 WANSNKKAFTHHEKNFDQK------AQDLLLKRIEKYCSVVRVIAHT------------- 162
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
M L RQKK H++EIQ+NGG VA+K+A+A+ LE+
Sbjct: 163 -----------------------NMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEK 199
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
+ V +FA++EM+D +GVTKGKGF G +I +K QKK H
Sbjct: 200 EVKVDSIFAENEMLDVLGVTKGKGFAG-VIKRFGVKHLQKKTH 241
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/123 (61%), Positives = 97/123 (78%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M L RQKK H++EIQ+NGG VA+K+A+A+ LE+ + V +FA++EM+D +GVTKGKG
Sbjct: 164 MSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKG 223
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F GV R+ K L +KTH+G RKV CIGAWHPSR++FTV RAGQ GYHHRTE NKK+YR+
Sbjct: 224 FAGVIKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRV 283
Query: 428 GAG 430
G G
Sbjct: 284 GKG 286
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 91/126 (72%), Gaps = 8/126 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K L +KTH+G RKV CIGAWHPSR++FTV RAGQ GYHHRTE
Sbjct: 217 GVTKGKGFAGVIKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTET 276
Query: 490 FLCKKKYLSMVIK----NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
K + V K +NAST D+T+K+ITP+GGFPHYG V NDF+MIKGCC+GPKKR
Sbjct: 277 ----NKKVYRVGKGDDASNASTAGDVTDKAITPLGGFPHYGVVKNDFIMIKGCCVGPKKR 332
Query: 546 VITLRK 551
V+TLRK
Sbjct: 333 VLTLRK 338
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI M L RQKK H++EIQ+NGG VA+K+A+A+ LE+ + V +FA++EM+D +
Sbjct: 157 RVIAHTNMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVL 216
Query: 605 GVTKGKGF 612
GVTKGKGF
Sbjct: 217 GVTKGKGF 224
>gi|363751473|ref|XP_003645953.1| hypothetical protein Ecym_4055 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889588|gb|AET39136.1| hypothetical protein Ecym_4055 [Eremothecium cymbalariae
DBVPG#7215]
Length = 387
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/266 (54%), Positives = 185/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS + +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDDLKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD + ++L +M KY VIRV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGTA---VEKELARMKKYATVIRVLAHTQIRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QK+AHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 172 -----------------------------AQKRAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID + VTKG GF+G
Sbjct: 203 VSVDSVFEQNEMIDVVAVTKGHGFEG 228
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 97/116 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QK+AHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKRAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKIYRIGKG 288
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKIYRIGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+T++D T+K+ITPMGGF HYG VNNDF+M+KG G +KRV+TLRK L
Sbjct: 289 DDEGNAATEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA + E+ L A K R
Sbjct: 348 RKA-IEEVTLKWIDTASKFGKGR 369
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QK+AHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID +
Sbjct: 159 RVLAHTQIRKTPLAQKRAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|134035929|gb|ABO47804.1| ribosomal protein L3 [Omphisa fuscidentalis]
Length = 135
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 115/135 (85%), Positives = 128/135 (94%)
Query: 45 APRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKI 104
APRHGSMGFYPKKRS RHRGKVK FPKDDP+KPVHLTAFIGYKAGMTH+VRE DRPGSKI
Sbjct: 1 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 60
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQ 164
NKKEIVEAVTI+ETPPMV VGV+GY+ETPHGLR+ T+WAEH+S++CRRRFYKNWYK ++
Sbjct: 61 NKKEIVEAVTIIETPPMVAVGVVGYIETPHGLRALLTIWAEHMSEDCRRRFYKNWYKCKK 120
Query: 165 KAFTKASKKWQDKLG 179
KAFTKASKKWQD+LG
Sbjct: 121 KAFTKASKKWQDELG 135
>gi|70909599|emb|CAJ17225.1| ribosomal protein L3e [Mycetophagus quadripustulatus]
Length = 283
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 116/131 (88%), Positives = 127/131 (96%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQLNGGS+ADK+ WAR+HLE+PIP+ QVFAQDEMIDCIGVTKGKG
Sbjct: 44 MKLLKQRQKKAHIMEIQLNGGSIADKVQWAREHLEKPIPINQVFAQDEMIDCIGVTKGKG 103
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 104 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 163
Query: 428 GAGIHTKDGKV 438
GAGIH+KD KV
Sbjct: 164 GAGIHSKDNKV 174
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 119/162 (73%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 97 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 155
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y + VIKNNAST+YDLTEK+ITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 156 -MNKKIYRIGAGIHSKDNKVIKNNASTEYDLTEKTITPMGGFPHYGEVNNDFIMIKGCCM 214
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+ L +I L + K R
Sbjct: 215 GPKKRVITLRKSLLV--HTKRVALEKINLKFIDTSSKFGHGR 254
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 99/142 (69%), Gaps = 36/142 (25%)
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
S++KAFTK+SKKW D LGKK+I +D +K+ KYCKV+RVIAHTQ
Sbjct: 1 SKKKAFTKSSKKWSDDLGKKSIERDFKKIVKYCKVVRVIAHTQ----------------- 43
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
MKLLK+RQKKAH+MEIQLNGGS+ADK+ WAR+HLE+PIP+
Sbjct: 44 -------------------MKLLKQRQKKAHIMEIQLNGGSIADKVQWAREHLEKPIPIN 84
Query: 282 QVFAQDEMIDCIGVTKGKGFKG 303
QVFAQDEMIDCIGVTKGKG+KG
Sbjct: 85 QVFAQDEMIDCIGVTKGKGYKG 106
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 64/69 (92%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLLK+RQKKAH+MEIQLNGGS+ADK+ WAR+HLE+PIP+ QVFAQDEMIDCI
Sbjct: 37 RVIAHTQMKLLKQRQKKAHIMEIQLNGGSIADKVQWAREHLEKPIPINQVFAQDEMIDCI 96
Query: 605 GVTKGKGFK 613
GVTKGKG+K
Sbjct: 97 GVTKGKGYK 105
>gi|297795267|ref|XP_002865518.1| hypothetical protein ARALYDRAFT_917513 [Arabidopsis lyrata subsp.
lyrata]
gi|297311353|gb|EFH41777.1| hypothetical protein ARALYDRAFT_917513 [Arabidopsis lyrata subsp.
lyrata]
Length = 375
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 176/265 (66%), Gaps = 49/265 (18%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDD TKP TAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETP MV+VGV+ YV+T GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTLRGLRSLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT +K+++ G+K I L KM KY +IRV+AHTQ +
Sbjct: 122 WAKSKKKAFTGYAKQYESDDGRKGIQAQLEKMKKYGTIIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK L QKKAH+MEIQ+NGG++ I
Sbjct: 170 ---------------------KMKGLT--QKKAHMMEIQINGGTI--------------I 192
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 193 PIDAVFQKDEMIDVIGVTKGKGYEG 217
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 100/141 (70%), Gaps = 8/141 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLR+VACIGAWHP+RV +TVARAGQ GYHHRTEL
Sbjct: 208 GVTKGKGYEGVVTRWGVTRLPRKTHRGLREVACIGAWHPARVSYTVARAGQNGYHHRTEL 267
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK Y + ++A T+YD TEK ITPMGGF HYG V +D+LMIKGCCMGPKKRV
Sbjct: 268 --NKKIYRLGKVGTETHSAMTEYDRTEKEITPMGGFAHYGIVKDDYLMIKGCCMGPKKRV 325
Query: 547 ITLRKMKLLKKRQKKAHLMEI 567
+TLR+ L RQ ME+
Sbjct: 326 VTLRQSLL---RQTSRLAMEV 343
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 90/114 (78%), Gaps = 14/114 (12%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH+MEIQ+NGG++ IP+ VF +DEMID IGVTKGKG++GV +R
Sbjct: 176 QKKAHMMEIQINGGTI--------------IPIDAVFQKDEMIDVIGVTKGKGYEGVVTR 221
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W +LPRKTH+GLR+VACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+G
Sbjct: 222 WGVTRLPRKTHRGLREVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG 275
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 16/68 (23%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK L QKKAH+MEIQ+NGG++ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLT--QKKAHMMEIQINGGTI--------------IPIDAVFQKDEMIDVIGVTK 211
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 212 GKGYEGVV 219
>gi|449017686|dbj|BAM81088.1| 60S ribosomal protein L3 [Cyanidioschyzon merolae strain 10D]
Length = 390
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 127/269 (47%), Positives = 178/269 (66%), Gaps = 46/269 (17%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDD-PTKPVHLTAFIGYKAGMTHIVREA 97
SHRK+ APRHGS+GF P+ R+ RHRG+V+ +P+D P P HLTAF KAG TH+VR+
Sbjct: 2 SHRKYEAPRHGSLGFLPRGRTKRHRGRVRSWPRDPGPAVPPHLTAFPVVKAGCTHVVRQI 61
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
DRPGSK++KKE+ E VTILE PP+VI G++GY ETP GLR+ +TV+AEHL+ E +RRFYK
Sbjct: 62 DRPGSKVHKKEVAEPVTILEAPPIVICGIVGYSETPRGLRAIRTVFAEHLNDEVKRRFYK 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQ---DLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
NWY++++KAFTK + L K ++ + DL + ++C V+RVIAHTQ ++ L
Sbjct: 122 NWYRAKKKAFTKYA------LAKYSMGEYRNDLDTIRRHCSVVRVIAHTQQRKFRL---- 171
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 274
RQKKAH++EIQ+NGG++ +K+ +A + L
Sbjct: 172 --------------------------------RQKKAHILEIQINGGTIPEKVDFAERLL 199
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+ + + V + DEM+D IGVT+GKGF+G
Sbjct: 200 EKTVSIDDVISNDEMVDTIGVTRGKGFEG 228
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
+ RQKKAH++EIQ+NGG++ +K+ +A + LE+ + + V + DEM+D IGVT+GKGF+G
Sbjct: 169 FRLRQKKAHILEIQINGGTIPEKVDFAERLLEKTVSIDDVISNDEMVDTIGVTRGKGFEG 228
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
V +R+ ++LPRKTH+GLRKVACIGAWHP+RVQFTV RAGQ+GYHHRT++N K+YR+G
Sbjct: 229 VVTRFGVRRLPRKTHRGLRKVACIGAWHPARVQFTVPRAGQRGYHHRTQMNLKVYRIGK- 287
Query: 431 IHTKDGKVSVTSRWHTKK 448
DGK + T T+K
Sbjct: 288 --KGDGKSATTEYDLTEK 303
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 90/122 (73%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +R+ ++LPRKTH+GLRKVACIGAWHP+RVQFTV RAGQ+GYHHRT++
Sbjct: 219 GVTRGKGFEGVVTRFGVRRLPRKTHRGLRKVACIGAWHPARVQFTVPRAGQRGYHHRTQM 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
L + +A+T+YDLTEK ITP+GGFPHYG + D++M++G GPKKR I L
Sbjct: 279 NLKVYRIGKKGDGKSATTEYDLTEKGITPLGGFPHYGVIREDWVMLRGAVQGPKKRPIIL 338
Query: 550 RK 551
RK
Sbjct: 339 RK 340
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 11/115 (9%)
Query: 502 KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKK 561
K A T Y L + S+ GE ND I+ C RVI + + + RQKK
Sbjct: 127 KKKAFTKYALAKYSM---------GEYRNDLDTIRRHCS--VVRVIAHTQQRKFRLRQKK 175
Query: 562 AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
AH++EIQ+NGG++ +K+ +A + LE+ + + V + DEM+D IGVT+GKGF+ V
Sbjct: 176 AHILEIQINGGTIPEKVDFAERLLEKTVSIDDVISNDEMVDTIGVTRGKGFEGVV 230
>gi|366992279|ref|XP_003675905.1| hypothetical protein NCAS_0C05510 [Naumovozyma castellii CBS 4309]
gi|342301770|emb|CCC69541.1| hypothetical protein NCAS_0C05510 [Naumovozyma castellii CBS 4309]
Length = 387
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 182/265 (68%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG +GF P+KR+ RG+VK FPKDD TKPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGHLGFLPRKRAVSVRGRVKSFPKDDKTKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAE--IEKELARIRKYASVVRVLVHTQVRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQLNGGS+++K+ WAR+H E+ +
Sbjct: 172 ----------------------------VQKKAHLAEIQLNGGSISEKVDWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID + VTKG GF+G
Sbjct: 204 AVDAVFEQNEMIDVVAVTKGHGFEG 228
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 98/116 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDAVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ+GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQRGYHHRTSINHKVYRIGKG 288
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 101/143 (70%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQRGYHHRTSINHKVYRIGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+NAST++D T+K+ITPMGGF HYGE+NNDF+M+KG G +KRV+TLRK L
Sbjct: 289 DDDSNASTNFDRTKKTITPMGGFVHYGEINNDFVMVKGSIPGTRKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA + ++QL A K R
Sbjct: 348 RKA-VEDVQLKWIDTASKFGKGR 369
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L+ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID + VTK
Sbjct: 166 VRKTPLV---QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDAVFEQNEMIDVVAVTK 222
Query: 609 GKGFKECVH 617
G GF+ H
Sbjct: 223 GHGFEGVTH 231
>gi|71032875|ref|XP_766079.1| 60S ribosomal protein L3 [Theileria parva strain Muguga]
gi|68353036|gb|EAN33796.1| 60S ribosomal protein L3, putative [Theileria parva]
Length = 384
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/265 (50%), Positives = 174/265 (65%), Gaps = 40/265 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF PKKRS HR K++ FP DDP KP HLTAF+GYKAGMTH+V E D
Sbjct: 2 SHRKFERPRSGSLGFLPKKRSRTHRAKIRSFPSDDPAKPPHLTAFVGYKAGMTHVVTEVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKE+VEAVT++ETPPMV VG++GYVETP GL+ TVWA HLS E RRRFYKN
Sbjct: 62 RPGSKLHKKEVVEAVTVVETPPMVCVGLVGYVETPRGLKVLGTVWAGHLSDELRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ + + Q+L+++ Y V+R + HTQ + SL
Sbjct: 122 WYKSKKKAFTKYAKKFAE----TGMEQELKRIRNYATVVRALMHTQPSKTSLS------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+KAHL+E+Q+NGG+ +K+++ E+ +
Sbjct: 171 -----------------------------LRKAHLLEVQVNGGTTDEKVSYVVGLFEKSV 201
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF ++EM+D +GVTKG G KG
Sbjct: 202 PVSTVFGENEMLDVLGVTKGHGVKG 226
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 94/121 (77%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
+KAHL+E+Q+NGG+ +K+++ E+ +PV VF ++EM+D +GVTKG G KGV SR+
Sbjct: 172 RKAHLLEVQVNGGTTDEKVSYVVGLFEKSVPVSTVFGENEMLDVLGVTKGHGVKGVVSRY 231
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
+LPRKTH+GLRKVACIG+WHP+RVQF V R GQKGYH RTE NKKIYR+G G ++
Sbjct: 232 GVTRLPRKTHRGLRKVACIGSWHPARVQFQVPRHGQKGYHKRTERNKKIYRLGLGSSARN 291
Query: 436 G 436
G
Sbjct: 292 G 292
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 96/143 (67%), Gaps = 8/143 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V SR+ +LPRKTH+GLRKVACIG+WHP+RVQF V R GQKGYH RTE
Sbjct: 217 GVTKGHGVKGVVSRYGVTRLPRKTHRGLRKVACIGSWHPARVQFQVPRHGQKGYHKRTER 276
Query: 490 FLCKKKYLSMVIKN---NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK + + + N STD DLTEK+ITPMGGFPHYG V DFLM+KGC G +KRV
Sbjct: 277 ---NKKIYRLGLGSSARNGSTDSDLTEKTITPMGGFPHYGVVREDFLMLKGCIPGTRKRV 333
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L + + L E+ L
Sbjct: 334 ITLRKT--LVPQTSRHALAEVNL 354
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KAHL+E+Q+NGG+ +K+++ E+ +PV VF ++EM+D +GVTKG G K V
Sbjct: 172 RKAHLLEVQVNGGTTDEKVSYVVGLFEKSVPVSTVFGENEMLDVLGVTKGHGVKGVV 228
>gi|365758431|gb|EHN00274.1| Rpl3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 387
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A R +VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VG++GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPVVVVGIVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD G + ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAG---VERELARVKKYASVVRVLVHTQIRKTPLS------ 172
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 173 ------------------------------QKKAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I V VF Q+EMID I VTKG GF+G
Sbjct: 203 IAVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ I V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTIAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKVYRVGKGDDEA 292
Query: 435 DGKVS 439
+G S
Sbjct: 293 NGATS 297
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ N +T +D T+K+I PMGGF HYG++ NDF+M+KGC G +KRV+ LRK L
Sbjct: 289 DDEANGATSFDRTKKTINPMGGFVHYGDLKNDFIMVKGCIPGNRKRVVNLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVNLKWIDTASKFGKGR 369
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ I V VF Q+EMID I
Sbjct: 159 RVLVHTQIRKTPLSQKKAHLAEIQLNGGSISEKVDWAREHFEKTIAVDSVFEQNEMIDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|6324637|ref|NP_014706.1| ribosomal 60S subunit protein L3 [Saccharomyces cerevisiae S288c]
gi|2507307|sp|P14126.4|RL3_YEAST RecName: Full=60S ribosomal protein L3; AltName: Full=Maintenance
of killer protein 8; AltName: Full=RP1; AltName:
Full=Trichodermin resistance protein; AltName: Full=YL1
gi|315113528|pdb|3O58|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
gi|315113573|pdb|3O5H|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
gi|365767253|pdb|3U5E|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
gi|365767294|pdb|3U5I|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
gi|410562480|pdb|4B6A|B Chain B, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
gi|1420207|emb|CAA99256.1| TCM1 [Saccharomyces cerevisiae]
gi|2104875|emb|CAA94548.1| YOR29-14 [Saccharomyces cerevisiae]
gi|151945689|gb|EDN63930.1| ribosomal protein L3 [Saccharomyces cerevisiae YJM789]
gi|190407398|gb|EDV10665.1| ribosomal protein L3 [Saccharomyces cerevisiae RM11-1a]
gi|256269309|gb|EEU04617.1| Rpl3p [Saccharomyces cerevisiae JAY291]
gi|259149545|emb|CAY86349.1| Rpl3p [Saccharomyces cerevisiae EC1118]
gi|285814949|tpg|DAA10842.1| TPA: ribosomal 60S subunit protein L3 [Saccharomyces cerevisiae
S288c]
gi|323302848|gb|EGA56652.1| Rpl3p [Saccharomyces cerevisiae FostersB]
gi|323307150|gb|EGA60433.1| Rpl3p [Saccharomyces cerevisiae FostersO]
gi|323331453|gb|EGA72868.1| Rpl3p [Saccharomyces cerevisiae AWRI796]
gi|323335592|gb|EGA76876.1| Rpl3p [Saccharomyces cerevisiae Vin13]
gi|323346509|gb|EGA80796.1| Rpl3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352260|gb|EGA84796.1| Rpl3p [Saccharomyces cerevisiae VL3]
gi|349581226|dbj|GAA26384.1| K7_Rpl3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763295|gb|EHN04825.1| Rpl3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296394|gb|EIW07496.1| Rpl3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 387
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/266 (54%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A R +VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD G I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAG---IERELARIKKYASVVRVLVHTQIRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 172 -----------------------------AQKKAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 203 VAVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEA 292
Query: 435 DGKVS 439
+G S
Sbjct: 293 NGATS 297
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ N +T +D T+K+ITPMGGF HYGE+ NDF+M+KGC G +KR++TLRK L
Sbjct: 289 DDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVSLKWIDTASKFGKGR 369
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I
Sbjct: 159 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|315113303|pdb|3IZS|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
Length = 388
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/266 (54%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A R +VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD G I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAG---IERELARIKKYASVVRVLVHTQIRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 172 -----------------------------AQKKAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 203 VAVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEA 292
Query: 435 DGKVS 439
+G S
Sbjct: 293 NGATS 297
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ N +T +D T+K+ITPMGGF HYGE+ NDF+M+KGC G +KR++TLRK L
Sbjct: 289 DDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVSLKWIDTASKFGKGR 369
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I
Sbjct: 159 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|50288047|ref|XP_446452.1| 60S ribosomal protein L3 [Candida glabrata CBS 138]
gi|74661344|sp|Q6FTJ2.1|RL3_CANGA RecName: Full=60S ribosomal protein L3
gi|49525760|emb|CAG59379.1| unnamed protein product [Candida glabrata]
Length = 387
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 183/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQNGAE--IERELARIKKYATVVRVLVHTQVRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQLNGGS+++K+ WAR+H E+ +
Sbjct: 172 ----------------------------VQKKAHLAEIQLNGGSISEKVDWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID I VTKG GF+G
Sbjct: 204 SVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 98/116 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKG 288
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+T++D T+K+I PMGGF HYG VNNDF+M+KG G KKRV+TLRK L
Sbjct: 289 DDEGNAATNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA + E+ L A K R
Sbjct: 348 RKA-VEEVTLKWIDTASKFGKGR 369
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L+ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTK
Sbjct: 166 VRKTPLV---QKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTK 222
Query: 609 GKGFKECVH 617
G GF+ H
Sbjct: 223 GHGFEGVTH 231
>gi|49258841|pdb|1S1I|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 386
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/266 (54%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A R +VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 1 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLD 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 61 RPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 120
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD G I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 121 WYKSKKKAFTKYSAKYAQDGAG---IERELARIKKYASVVRVLVHTQIRKTPL------- 170
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 171 -----------------------------AQKKAHLAEIQLNGGSISEKVDWAREHFEKT 201
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 202 VAVDSVFEQNEMIDAIAVTKGHGFEG 227
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 172 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 231
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT +N KIYR+G G
Sbjct: 232 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEA 291
Query: 435 DGKVS 439
+G S
Sbjct: 292 NGATS 296
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT + +
Sbjct: 228 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG 287
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ N +T +D T+K+ITPMGGF HYGE+ NDF+M+KGC G +KR++TLRK L
Sbjct: 288 DDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRK-SLYTNTS 346
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 347 RKA-LEEVSLKWIDTASKFGKGR 368
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I
Sbjct: 158 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 217
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 218 AVTKGHGFEGVTH 230
>gi|410078898|ref|XP_003957030.1| hypothetical protein KAFR_0D02480 [Kazachstania africana CBS 2517]
gi|372463615|emb|CCF57895.1| hypothetical protein KAFR_0D02480 [Kazachstania africana CBS 2517]
Length = 387
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/266 (54%), Positives = 181/266 (68%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG +GF P+KR+ RG+VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGHLGFLPRKRAVSVRGRVKSFPKDDQSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++ P +V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDAPAVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD I ++L ++ KY VIRV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSTKYAQDGAA---IEKELARLRKYATVIRVLVHTQVRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++KI WAR+H E+
Sbjct: 172 -----------------------------AQKKAHLAEIQLNGGSISEKIDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID + VTKG GF+G
Sbjct: 203 VSVDSVFEQNEMIDVVAVTKGHGFEG 228
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/116 (71%), Positives = 97/116 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++KI WAR+H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKIDWAREHFEKTVSVDSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKIYRIGKG 288
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKIYRIGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NAST +D T+K+ITPMGGF HYG +NNDF+M+KG G +KRV+TLRK L
Sbjct: 289 DDEANASTSFDRTKKTITPMGGFVHYGPINNDFVMLKGSIPGTRKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVTLKWIDTASKFGKGR 369
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAHL EIQLNGGS+++KI WAR+H E+ + V VF Q+EMID + VTKG GF+ H
Sbjct: 173 QKKAHLAEIQLNGGSISEKIDWAREHFEKTVSVDSVFEQNEMIDVVAVTKGHGFEGVTH 231
>gi|1197059|gb|AAA88732.1| ribosomal protein L3 [Saccharomyces cerevisiae]
Length = 387
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/266 (54%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A R +VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD G I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAG---IERELARIKKYASVVRVLVHTQIRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 172 -----------------------------AQKKAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 203 VAVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 99/125 (79%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGA HP+ V ++VARAGQ+GYH RT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGACHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEA 292
Query: 435 DGKVS 439
+G S
Sbjct: 293 NGATS 297
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGA HP+ V ++VARAGQ+GYH RT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGACHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ N +T +D T+K+ITPMGGF HYGE+ NDF+M+KGC G +KR++TLRK L
Sbjct: 289 DDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVSLKWIDTASKFGKGR 369
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I
Sbjct: 159 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|307107912|gb|EFN56153.1| hypothetical protein CHLNCDRAFT_35097 [Chlorella variabilis]
Length = 386
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 183/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF PKKR R +GKVK FPKDD TKP HLTAF+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEAPRHGSLGFLPKKRCKRGKGKVKSFPKDDQTKPPHLTAFMGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VG++GYV+T G+RS TVWAEHLS+E +RRFYK+
Sbjct: 62 KPGSKLHKKEAAEAVTIIETPPMVVVGIVGYVKTTRGMRSLNTVWAEHLSEEVKRRFYKS 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KK+ D GKK + ++ ++ K+C VIRV+AHTQ
Sbjct: 122 WYKSKKKAFTKYVKKYAD--GKKEVEAEVAELKKHCCVIRVLAHTQ-------------I 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+ P+ QKKAHLMEIQ+NGGSVA K+ +A LE+ +
Sbjct: 167 RKVPVG-----------------------QKKAHLMEIQVNGGSVAAKVDFAYGLLEKAV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q EM+D I +TKG G +G
Sbjct: 204 SVNTVFNQSEMVDAIAITKGHGTEG 228
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 92/114 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHLMEIQ+NGGSVA K+ +A LE+ + V VF Q EM+D I +TKG G +GV +R
Sbjct: 173 QKKAHLMEIQVNGGSVAAKVDFAYGLLEKAVSVNTVFNQSEMVDAIAITKGHGTEGVVTR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W +LPRKTH+GLRKVACIGAWHP+RV +TVAR+G G++HRTE+NKK+YR+G
Sbjct: 233 WGVSRLPRKTHRGLRKVACIGAWHPARVGWTVARSGAMGFNHRTEMNKKVYRIG 286
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 101/151 (66%), Gaps = 9/151 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVAR+G G++HRTE+ KK
Sbjct: 225 GTEGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVGWTVARSGAMGFNHRTEM---NKK 281
Query: 496 YLSMVIKNN----ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ +K A+T++D+T K ITPMGGFPHYG V D++MIKG C G K+RVITLRK
Sbjct: 282 VYRIGVKGEESHAATTEHDVTVKDITPMGGFPHYGVVKEDYVMIKGACPGVKRRVITLRK 341
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
L K+ ++ L E++L A K R
Sbjct: 342 S--LFKQTSRSALEEVKLKFIDTASKFGNGR 370
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 536 KGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 595
K CC+ RV+ +++ + QKKAHLMEIQ+NGGSVA K+ +A LE+ + V VF
Sbjct: 153 KHCCV---IRVLAHTQIRKVPVGQKKAHLMEIQVNGGSVAAKVDFAYGLLEKAVSVNTVF 209
Query: 596 AQDEMIDCIGVTKGKGFKECV 616
Q EM+D I +TKG G + V
Sbjct: 210 NQSEMVDAIAITKGHGTEGVV 230
>gi|224004980|ref|XP_002296141.1| RL3, ribosomal protein 3, 60S large ribosomal subunit
[Thalassiosira pseudonana CCMP1335]
gi|209586173|gb|ACI64858.1| RL3, ribosomal protein 3, 60S large ribosomal subunit
[Thalassiosira pseudonana CCMP1335]
Length = 395
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/267 (50%), Positives = 185/267 (69%), Gaps = 39/267 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKD-DPTKPVHLTAFIGYKAGMTHIVREA 97
SHRKF APRHG++GF PKKR+ H G+++ FPKD D + P HLTAF YKAGMTH+VR
Sbjct: 2 SHRKFEAPRHGNLGFLPKKRTKHHSGRIRSFPKDNDASAPPHLTAFRAYKAGMTHVVRGV 61
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
DRPG+ ++K+E+V+AV+ILETPPMV+VGV+GY+ETP GLR+ TV+AEHLS+E +RR YK
Sbjct: 62 DRPGAVMHKREVVDAVSILETPPMVVVGVVGYLETPRGLRTLTTVFAEHLSEEFKRRAYK 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
NWYKS++KA+TK +KK+ + GK I ++L ++AK+CKV+RVI H+Q
Sbjct: 122 NWYKSKRKAYTKYAKKYTENDGKD-IEKELERIAKHCKVVRVITHSQ------------- 167
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQ 276
+K L R +KAH+ME+Q+NGG+ A K+ +A+ E+
Sbjct: 168 -----------------------VKKLHLRIRKAHIMEVQINGGADAKAKVDFAKSLFEK 204
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VFA+DE+ID +GVTKG G++G
Sbjct: 205 EVTVDSVFAKDELIDVLGVTKGHGYEG 231
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 366
+K L R +KAH+ME+Q+NGG+ A K+ +A+ E+ + V VFA+DE+ID +GVTKG
Sbjct: 168 VKKLHLRIRKAHIMEVQINGGADAKAKVDFAKSLFEKEVTVDSVFAKDELIDVLGVTKGH 227
Query: 367 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
G++GVT+RW +LPRKTH+GLRKVACIG+WHP+RV TV RAGQ GYHHRTE+NKKIYR
Sbjct: 228 GYEGVTTRWGVSRLPRKTHRGLRKVACIGSWHPARVSDTVPRAGQNGYHHRTEMNKKIYR 287
Query: 427 MG 428
+G
Sbjct: 288 IG 289
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 101/155 (65%), Gaps = 6/155 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW +LPRKTH+GLRKVACIG+WHP+RV TV RAGQ GYHHRTE
Sbjct: 222 GVTKGHGYEGVTTRWGVSRLPRKTHRGLRKVACIGSWHPARVSDTVPRAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVIKNNAS--TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ KK Y +N+S TD DLTEKSITPMGGF HYG++ D++MIKG C+G KKR +
Sbjct: 281 -MNKKIYRIGKKGDNSSCQTDADLTEKSITPMGGFVHYGQIREDWVMIKGACVGVKKRPL 339
Query: 548 TLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
LRK L K + HL I L + K+ R
Sbjct: 340 ILRKS--LMKHSSRKHLESIDLRFIDTSSKLGHGR 372
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPVGQVFAQDEMIDC 603
RVIT ++K L R +KAH+ME+Q+NGG+ A K+ +A+ E+ + V VFA+DE+ID
Sbjct: 161 RVITHSQVKKLHLRIRKAHIMEVQINGGADAKAKVDFAKSLFEKEVTVDSVFAKDELIDV 220
Query: 604 IGVTKGKGFK 613
+GVTKG G++
Sbjct: 221 LGVTKGHGYE 230
>gi|82596814|ref|XP_726417.1| ribosomal protein L3 [Plasmodium yoelii yoelii 17XNL]
gi|23481819|gb|EAA17982.1| ribosomal protein L3, putative [Plasmodium yoelii yoelii]
Length = 386
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/281 (46%), Positives = 173/281 (61%), Gaps = 42/281 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR R RGK++ FPKD+ P H TAF+GYK+GM+HIVRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDNKELPPHFTAFMGYKSGMSHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEA TI+E PMV+VG++GY ETP GL+ VWA H+S E RRR+YKN
Sbjct: 62 KPGSKLHKKEIVEACTIVECAPMVVVGMVGYRETPKGLKVLTAVWANHVSDEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS +KAFTK + T + ++ KYC ++R + HTQ + L
Sbjct: 122 WYKSDKKAFTKCL-----NIPDTTKEKLYNRIEKYCTILRAVCHTQPSKTPL-------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
R KKAH+MEIQ+NGG + DKI + ++ LE+ I
Sbjct: 169 ----------------------------RLKKAHIMEIQINGGHMKDKINFVKELLEKNI 200
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
PV VF +EMID I VTKG G KG +++ +K+ +K H
Sbjct: 201 PVTNVFNTNEMIDVISVTKGHGTKG-VVSRYGVKRLPRKTH 240
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 92/115 (80%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
R KKAH+MEIQ+NGG + DKI + ++ LE+ IPV VF +EMID I VTKG G KGV S
Sbjct: 169 RLKKAHIMEIQINGGHMKDKINFVKELLEKNIPVTNVFNTNEMIDVISVTKGHGTKGVVS 228
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
R+ K+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE NKKIYR+G
Sbjct: 229 RYGVKRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTERNKKIYRIG 283
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/119 (66%), Positives = 89/119 (74%), Gaps = 6/119 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V SR+ K+LPRKTH+GLRKVACIGAWHP+RVQF V R GQKGY HRTE KK
Sbjct: 222 GTKGVVSRYGVKRLPRKTHRGLRKVACIGAWHPARVQFQVPRHGQKGYFHRTER---NKK 278
Query: 496 YLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ + KNNASTD D+TEK ITPMGGFPHYG VN DF+++KGC G KKR ITLRK
Sbjct: 279 IYRIGLKKDKNNASTDADITEKKITPMGGFPHYGVVNEDFILLKGCISGTKKRPITLRK 337
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
R KKAH+MEIQ+NGG + DKI + ++ LE+ IPV VF +EMID I VTKG G K V
Sbjct: 169 RLKKAHIMEIQINGGHMKDKINFVKELLEKNIPVTNVFNTNEMIDVISVTKGHGTKGVV 227
>gi|156849033|ref|XP_001647397.1| hypothetical protein Kpol_1018p71 [Vanderwaltozyma polyspora DSM
70294]
gi|156118083|gb|EDO19539.1| hypothetical protein Kpol_1018p71 [Vanderwaltozyma polyspora DSM
70294]
Length = 387
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 183/266 (68%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD +K V LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKAVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E RRRFYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAF+K S K+ QD I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFSKYSTKYAQDGAA---IERELARIKKYASVVRVLVHTQVRKTPLS------ 172
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 173 ------------------------------QKKAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID + VTKG GF+G
Sbjct: 203 VAVDSVFEQNEMIDVVAVTKGHGFEG 228
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/134 (62%), Positives = 105/134 (78%), Gaps = 3/134 (2%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TK+LPRKTH+GLRKVACIG WHP+ V ++VARAGQ+GYHHRT +N K+YR+G G +
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGPWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKG---E 289
Query: 435 DGKVSVTSRWHTKK 448
D + TS TKK
Sbjct: 290 DEANAATSFDRTKK 303
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TK+LPRKTH+GLRKVACIG WHP+ V ++VARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKRLPRKTHRGLRKVACIGPWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+T +D T+K+I PMGGF YG VNNDF+M+KG G KKRV+TLRK L
Sbjct: 289 EDEANAATSFDRTKKTINPMGGFVQYGMVNNDFVMVKGSIPGCKKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVTLKWIDTASKFGKGR 369
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID +
Sbjct: 159 RVLVHTQVRKTPLSQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|444320033|ref|XP_004180673.1| hypothetical protein TBLA_0E00930 [Tetrapisispora blattae CBS 6284]
gi|387513716|emb|CCH61154.1| hypothetical protein TBLA_0E00930 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 142/266 (53%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD +K V LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRGRVKSFPKDDKSKAVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD +I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDPA---SIERELARITKYASVVRVLVHTQIRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL E+QLNGGS+ADK+ WA++H E+
Sbjct: 172 -----------------------------SQKKAHLAEVQLNGGSIADKVQWAKEHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+E+ID + VTKG GF+G
Sbjct: 203 VSVDSVFEQNELIDVVAVTKGHGFEG 228
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 95/114 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL E+QLNGGS+ADK+ WA++H E+ + V VF Q+E+ID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEVQLNGGSIADKVQWAKEHFEKTVSVDSVFEQNELIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W TK+LPRKTH+GLRKVACIG WHP+ V ++VARAGQ GYHHRT +N K+YR+G
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGPWHPAHVMWSVARAGQNGYHHRTSINHKVYRVG 286
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TK+LPRKTH+GLRKVACIG WHP+ V ++VARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKRLPRKTHRGLRKVACIGPWHPAHVMWSVARAGQNGYHHRTSINHKVYRVGKA 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ + +T++D T+K++TPMGGF HYG +NNDF+M+KG G +KRV+TLRK L
Sbjct: 289 GDEASGATNFDRTKKTVTPMGGFVHYGHINNDFIMLKGSIPGNRKRVVTLRK-SLYTHTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVTLKWIDTASKFGKGR 369
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL E+QLNGGS+ADK+ WA++H E+ + V VF Q+E+ID +
Sbjct: 159 RVLVHTQIRKTPLSQKKAHLAEVQLNGGSIADKVQWAKEHFEKTVSVDSVFEQNELIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>gi|68065494|ref|XP_674730.1| ribosomal protein L3 [Plasmodium berghei strain ANKA]
gi|56493491|emb|CAH94107.1| ribosomal protein L3, putative [Plasmodium berghei]
Length = 225
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/265 (48%), Positives = 163/265 (61%), Gaps = 41/265 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR R RGK++ FPKD+ H TAF+GYK+GM+HIVRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDNKELAPHFTAFMGYKSGMSHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEA TI+E PMV+VG++GY ETP GL+ VWA H+S E RRR+YKN
Sbjct: 62 KPGSKLHKKEIVEACTIVECAPMVVVGMVGYRETPKGLKVLTAVWANHVSDEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS +KAFTK + T + ++ KYC ++R I HTQ + L
Sbjct: 122 WYKSDKKAFTKCL-----NIPDTTKEKLYNRIEKYCTILRAICHTQPSKTPL-------- 168
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
R KKAH+MEIQ+NGG + DKI + ++ LE+ I
Sbjct: 169 ----------------------------RLKKAHIMEIQINGGHMKDKINFVKELLEKNI 200
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +EMID I VTKG G KG
Sbjct: 201 PVTNVFNTNEMIDVISVTKGHGTKG 225
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
R KKAH+MEIQ+NGG + DKI + ++ LE+ IPV VF +EMID I VTKG G KG
Sbjct: 169 RLKKAHIMEIQINGGHMKDKINFVKELLEKNIPVTNVFNTNEMIDVISVTKGHGTKG 225
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
R KKAH+MEIQ+NGG + DKI + ++ LE+ IPV VF +EMID I VTKG G K
Sbjct: 169 RLKKAHIMEIQINGGHMKDKINFVKELLEKNIPVTNVFNTNEMIDVISVTKGHGTK 224
>gi|302833677|ref|XP_002948402.1| component of cytosolic 80S ribosome and 60S large subunit [Volvox
carteri f. nagariensis]
gi|300266622|gb|EFJ50809.1| component of cytosolic 80S ribosome and 60S large subunit [Volvox
carteri f. nagariensis]
Length = 386
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 180/265 (67%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR R RGKVK FP+DD +KPVHLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRSGSLGFSPRKRCRRGRGKVKSFPRDDASKPVHLTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+E PPMV+VGV+GYV+TP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIECPPMVVVGVVGYVKTPRGLRSLNTVWAEHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK +KK+ D GKK I +L + K+C VIRV+AHT
Sbjct: 122 WFKSKKKAFTKYAKKYSD--GKKAIEAELASLKKHCSVIRVLAHT--------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+K L QKKAHL+EIQ+NGG+VA K+ +A E+ +
Sbjct: 165 ---------------------QVKKLGFGQKKAHLIEIQVNGGTVAQKVDFAYAMFEKQV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF +EMID I +TKG G +G
Sbjct: 204 SVDAVFQPNEMIDTIAITKGHGVQG 228
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 93/114 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL+EIQ+NGG+VA K+ +A E+ + V VF +EMID I +TKG G +GV R
Sbjct: 173 QKKAHLIEIQVNGGTVAQKVDFAYAMFEKQVSVDAVFQPNEMIDTIAITKGHGVQGVVQR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ+G+HHRTE+NKK+Y++G
Sbjct: 233 WGVTRLPRKTHRGLRKVACIGAWHPARVKWTVARAGQQGFHHRTEINKKVYKIG 286
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 102/151 (67%), Gaps = 9/151 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ+G+HHRTE+ KK
Sbjct: 225 GVQGVVQRWGVTRLPRKTHRGLRKVACIGAWHPARVKWTVARAGQQGFHHRTEI---NKK 281
Query: 496 YLSMVIKNNAS----TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K AS TD+D+T+K ITPMGGFPHYG VN D++M+KG G KKR ITLR+
Sbjct: 282 VYKIGKKGEASHLATTDFDVTKKEITPMGGFPHYGVVNEDYIMVKGAVPGTKKRAITLRR 341
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
LL + + A L EI+L A K R
Sbjct: 342 -SLLPQTSRNA-LEEIKLKFIDTASKFGHGR 370
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K L QKKAHL+EIQ+NGG+VA K+ +A E+ + V VF +EMID I
Sbjct: 159 RVLAHTQVKKLGFGQKKAHLIEIQVNGGTVAQKVDFAYAMFEKQVSVDAVFQPNEMIDTI 218
Query: 605 GVTKGKGFKECV 616
+TKG G + V
Sbjct: 219 AITKGHGVQGVV 230
>gi|219121047|ref|XP_002185755.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582604|gb|ACI65225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 389
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/265 (49%), Positives = 179/265 (67%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF PKKR+ H G+++ FP+DD + HLTAF GYKAGMTH+VR D
Sbjct: 1 SHRKFEAPRHGSLGFLPKKRTKYHSGRIRSFPRDDAAEQPHLTAFRGYKAGMTHVVRGVD 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+ ++K+E+V+AV+I+ETPPMV+VGV+GYVETP GLR+ TV+ EHLS+E +RR YKN
Sbjct: 61 RPGALMHKREVVDAVSIVETPPMVVVGVVGYVETPSGLRTLTTVFTEHLSEEFKRRCYKN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY S++KA+TK + K+Q K G K I +L ++ K+C V+RVIAH+
Sbjct: 121 WYNSKKKAYTKYALKYQ-KDGGKDIENELERIKKFCSVVRVIAHS--------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q+K L R KKAH+MEIQ+NGG A K+ +A+ E+ +
Sbjct: 165 ---------------------QVKKLNLRIKKAHIMEIQVNGGDTAAKVDFAKNLFEKEV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +FA+DE ID +GVT+G G++G
Sbjct: 204 TVDSIFAKDEQIDVLGVTRGHGYEG 228
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 95/121 (78%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
+K L R KKAH+MEIQ+NGG A K+ +A+ E+ + V +FA+DE ID +GVT+G G
Sbjct: 166 VKKLNLRIKKAHIMEIQVNGGDTAAKVDFAKNLFEKEVTVDSIFAKDEQIDVLGVTRGHG 225
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GVT+RW +LPRKTH+GLRKVACIG+WHP+RV TV RAGQ GY HRTE+NKK+YR+
Sbjct: 226 YEGVTTRWGVSRLPRKTHRGLRKVACIGSWHPARVSTTVPRAGQNGYFHRTEMNKKVYRV 285
Query: 428 G 428
G
Sbjct: 286 G 286
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 99/155 (63%), Gaps = 6/155 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW +LPRKTH+GLRKVACIG+WHP+RV TV RAGQ GY HRTE
Sbjct: 219 GVTRGHGYEGVTTRWGVSRLPRKTHRGLRKVACIGSWHPARVSTTVPRAGQNGYFHRTE- 277
Query: 490 FLCKKKYLSMVIKNNAS--TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ KK Y + AS TD DLT+KSITPMGGF HYGEV D+LM+KG +G KKR +
Sbjct: 278 -MNKKVYRVGKKGDEASCQTDADLTKKSITPMGGFVHYGEVKEDWLMLKGAIVGVKKRPL 336
Query: 548 TLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
LRK L K + HL +I + + K+ R
Sbjct: 337 ILRKS--LMKHSSRKHLEKIDIKFIDTSSKLGHGR 369
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ N+ IK C RVI ++K L R KKAH+MEIQ+NGG A K+ +A+ E
Sbjct: 143 DIENELERIKKFC--SVVRVIAHSQVKKLNLRIKKAHIMEIQVNGGDTAAKVDFAKNLFE 200
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ + V +FA+DE ID +GVT+G G++
Sbjct: 201 KEVTVDSIFAKDEQIDVLGVTRGHGYE 227
>gi|401623590|gb|EJS41683.1| rpl3p [Saccharomyces arboricola H-6]
Length = 387
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 183/266 (68%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A R +VK FPKDD +K V LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDKSKAVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ Q+ G I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQEGAG---IERELARIKKYASVVRVLVHTQVRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGSV++K+ WAR+H E+
Sbjct: 172 -----------------------------VQKKAHLAEIQLNGGSVSEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 203 VAVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/122 (68%), Positives = 99/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGSV++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSVSEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEA 292
Query: 435 DG 436
+G
Sbjct: 293 NG 294
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ N +T++D T+K+I PMGGF HYGE+NNDF+M+KGC G +KR++TLRK L
Sbjct: 289 DDEANGATNFDRTKKTINPMGGFVHYGEINNDFVMVKGCIPGNRKRIVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVNLKWIDTASKFGKGR 369
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L+ QKKAHL EIQLNGGSV++K+ WAR+H E+ + V VF Q+EMID I VTK
Sbjct: 166 VRKTPLV---QKKAHLAEIQLNGGSVSEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTK 222
Query: 609 GKGFKECVH 617
G GF+ H
Sbjct: 223 GHGFEGVTH 231
>gi|295646729|gb|ADG23115.1| 60S ribosomal protein L3 [Rhizoplaca chrysoleuca]
Length = 180
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 145/176 (82%), Gaps = 1/176 (0%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR++RHRGKVK FPKD+P +PVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRASRHRGKVKSFPKDNPKEPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVT++ETPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKLHKKEIVEAVTVIETPPMMVVGIVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
WYKS++KAFTK +KK + G K I ++L ++ KYC V+RV+AH Q + L Q +
Sbjct: 122 WYKSKKKAFTKYAKKHAEDSG-KPINRELERIKKYCTVVRVLAHHQVSKTPLKQKK 176
>gi|308798657|ref|XP_003074108.1| ribosomal protein L3.e, cytosolic-rice sp|P35684|RL3_ORYSA 60S
ribosomal p (ISS) [Ostreococcus tauri]
gi|116000280|emb|CAL49960.1| ribosomal protein L3.e, cytosolic-rice sp|P35684|RL3_ORYSA 60S
ribosomal p (ISS), partial [Ostreococcus tauri]
Length = 421
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 138/260 (53%), Positives = 178/260 (68%), Gaps = 39/260 (15%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
+ PR+G++GF PKKRS R RGKVK FPKDD +KP HLTAF+G+KAGMTH+VR+ ++PGSK
Sbjct: 42 TDPRYGNLGFLPKKRSQRSRGKVKSFPKDDASKPPHLTAFMGFKAGMTHVVRDVEKPGSK 101
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
++KKE +AVTI+E P +V+VG++GYV TP GLR KTVWAEHL+ E RRRFYKNW+KS+
Sbjct: 102 MHKKEQCDAVTIIECPELVVVGLVGYVRTPKGLRGKKTVWAEHLNDEIRRRFYKNWFKSK 161
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+KAFTK +K + + +I +DL ++ K C VIRVIAHTQ +
Sbjct: 162 KKAFTKYAKNYTN----GSIEKDLEELKKSCDVIRVIAHTQVR----------------- 200
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
++K LK QKKAH+MEIQ+NGG A K+ + E+ +PV V
Sbjct: 201 ----------------KVKGLK--QKKAHIMEIQVNGGDAAAKVDFGFALFEKTVPVDSV 242
Query: 284 FAQDEMIDCIGVTKGKGFKG 303
F QDEMID IGVTKGKGF+G
Sbjct: 243 FQQDEMIDLIGVTKGKGFQG 262
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/115 (69%), Positives = 94/115 (81%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGG A K+ + E+ +PV VF QDEMID IGVTKGKGF+GV +
Sbjct: 206 KQKKAHIMEIQVNGGDAAAKVDFGFALFEKTVPVDSVFQQDEMIDLIGVTKGKGFQGVVT 265
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW KLPRKTH+GLRKV CIGAWHPSRV +TVARAGQ GYHHRTELNKK+Y++G
Sbjct: 266 RWGVTKLPRKTHRGLRKVGCIGAWHPSRVSYTVARAGQMGYHHRTELNKKVYKIG 320
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 96/143 (67%), Gaps = 5/143 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW KLPRKTH+GLRKV CIGAWHPSRV +TVARAGQ GYHHRTE
Sbjct: 253 GVTKGKGFQGVVTRWGVTKLPRKTHRGLRKVGCIGAWHPSRVSYTVARAGQMGYHHRTE- 311
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + A+TD+D TEK ITPMGGF HYG V +D++MIKG +GP+KR+
Sbjct: 312 -LNKKVYKIGKAGTANFGANTDFDPTEKEITPMGGFGHYGIVKSDYVMIKGGVVGPRKRL 370
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
IT+R+ + R+ + I+
Sbjct: 371 ITMRQSLFKQTRRVATEKINIKF 393
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
G + D +K C RVI +RK+K LK QKKAH+MEIQ+NGG A K+ +
Sbjct: 175 GSIEKDLEELKKSC--DVIRVIAHTQVRKVKGLK--QKKAHIMEIQVNGGDAAAKVDFGF 230
Query: 583 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
E+ +PV VF QDEMID IGVTKGKGF+ V
Sbjct: 231 ALFEKTVPVDSVFQQDEMIDLIGVTKGKGFQGVV 264
>gi|281500833|pdb|3JYW|C Chain C, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 362
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/263 (53%), Positives = 181/263 (68%), Gaps = 40/263 (15%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K+ APRHG +GF P+KR+A R +VK FPKDD +KPV LT+F+GYKAGMT IVR+ DRPG
Sbjct: 1 KYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPG 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
SK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKNWYK
Sbjct: 61 SKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYK 120
Query: 162 SRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
S++KAFTK S K+ QD G I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 121 SKKKAFTKYSAKYAQDGAG---IERELARIKKYASVVRVLVHTQIRKTPLA--------- 168
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V
Sbjct: 169 ---------------------------QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAV 201
Query: 281 GQVFAQDEMIDCIGVTKGKGFKG 303
VF Q+EMID I VTKG GF+G
Sbjct: 202 DSVFEQNEMIDAIAVTKGHGFEG 224
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 169 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 228
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT +N KIYR+G G
Sbjct: 229 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEA 288
Query: 435 DGKVS 439
+G S
Sbjct: 289 NGATS 293
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 96/140 (68%), Gaps = 2/140 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT + +
Sbjct: 225 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG 284
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ N +T +D T+K+ITPMGGF HYGE+ NDF+M+KGC G +KR++TLRK L
Sbjct: 285 DDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRK-SLYTNTS 343
Query: 560 KKAHLMEIQLNGGSVADKIA 579
+KA L E+ L A K
Sbjct: 344 RKA-LEEVSLKWIDTASKFG 362
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I
Sbjct: 155 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 214
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 215 AVTKGHGFEGVTH 227
>gi|84998984|ref|XP_954213.1| 60S ribosomal protein l3 [Theileria annulata]
gi|65305211|emb|CAI73536.1| 60S ribosomal protein l3, putative [Theileria annulata]
Length = 203
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/240 (51%), Positives = 155/240 (64%), Gaps = 39/240 (16%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF PKKRS HR K++ FPKDD TKP HLTAFIGYKAGMTH+V E D
Sbjct: 2 SHRKFERPRSGSLGFLPKKRSRTHRAKIRSFPKDDITKPPHLTAFIGYKAGMTHVVTEVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++KKEIVEAVTI+ETPPM++VG++GYVETP GL+ TVWA HLS E RRRFYKN
Sbjct: 62 RPGSKLHKKEIVEAVTIVETPPMIVVGLVGYVETPRGLKVLGTVWAGHLSDELRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK+ + G + +L+++ Y VIR + HTQ + SL
Sbjct: 122 WYKSKKKAFTKYAKKYVETNG---MELELKRLKNYSTVIRALLHTQPSKTSLS------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+KAHL+E+Q+NGG++ K++ PI
Sbjct: 172 -----------------------------LRKAHLLEVQINGGTIDQKVSITVLAPAAPI 202
>gi|353227573|emb|CCA78076.1| probable RPL3-60s ribosomal protein l3 [Piriformospora indica DSM
11827]
Length = 360
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/233 (54%), Positives = 166/233 (71%), Gaps = 36/233 (15%)
Query: 71 KDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYV 130
KDDP KPVHLTA +GYKAGMTH+VR+ DRPGSK++K+E+VEAVTI+ETPP+V+VGV+GYV
Sbjct: 5 KDDPKKPVHLTATLGYKAGMTHVVRDLDRPGSKMHKREVVEAVTIIETPPLVVVGVVGYV 64
Query: 131 ETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKM 190
ETP GLR+ TVWA HLS+E +RRFYKNWY+S++KAFTK +KK + G+K++ ++L ++
Sbjct: 65 ETPRGLRTLTTVWAAHLSEELKRRFYKNWYRSKKKAFTKYAKKMSEAAGQKSMDRELERI 124
Query: 191 AKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKK 250
KYC V+RV+AHTQ ++ L +QKK
Sbjct: 125 RKYCTVVRVLAHTQIRKTGL------------------------------------KQKK 148
Query: 251 AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
AHLMEIQ+NGGS+ DK+A+AR EQ + V +F QDE++D IGVTKG GF+G
Sbjct: 149 AHLMEIQVNGGSIPDKVAFARGLFEQEVAVSTIFEQDEVVDVIGVTKGHGFEG 201
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/123 (73%), Positives = 105/123 (85%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ DK+A+AR EQ + V +F QDE++D IGVTKG GF+GVT+
Sbjct: 145 KQKKAHLMEIQVNGGSIPDKVAFARGLFEQEVAVSTIFEQDEVVDVIGVTKGHGFEGVTA 204
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G G
Sbjct: 205 RWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTELNKKIYRVGTGGDC 264
Query: 434 KDG 436
K+G
Sbjct: 265 KNG 267
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/124 (65%), Positives = 93/124 (75%), Gaps = 4/124 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTE
Sbjct: 192 GVTKGHGFEGVTARWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQNGYHHRTE- 250
Query: 490 FLCKKKYLSMVIKN--NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
L KK Y + N +TD D T+K+ITP+GGFPHYG V NDFLM+KG G KKRV+
Sbjct: 251 -LNKKIYRVGTGGDCKNGATDADATDKTITPLGGFPHYGIVKNDFLMLKGSVPGTKKRVL 309
Query: 548 TLRK 551
T+RK
Sbjct: 310 TIRK 313
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ DK+A+AR EQ + V +F QDE++D I
Sbjct: 132 RVLAHTQIRKTGLKQKKAHLMEIQVNGGSIPDKVAFARGLFEQEVAVSTIFEQDEVVDVI 191
Query: 605 GVTKGKGFK 613
GVTKG GF+
Sbjct: 192 GVTKGHGFE 200
>gi|284073164|gb|ADB77821.1| 60S ribosomal protein L3 [Ostreococcus tauri]
Length = 230
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/257 (53%), Positives = 176/257 (68%), Gaps = 39/257 (15%)
Query: 47 RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINK 106
R+G++GF PKKRS R RGKVK FPKDD +KP HLTAF+G+KAGMTH+VR+ ++PGSK++K
Sbjct: 4 RYGNLGFLPKKRSQRSRGKVKSFPKDDASKPPHLTAFMGFKAGMTHVVRDVEKPGSKMHK 63
Query: 107 KEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKA 166
KE +AVTI+E P +V+VG++GYV TP GLR KTVWAEHL+ E RRRFYKNW+KS++KA
Sbjct: 64 KEQCDAVTIIECPELVVVGLVGYVRTPKGLRGKKTVWAEHLNDEIRRRFYKNWFKSKKKA 123
Query: 167 FTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSN 226
FTK +K + + +I +DL ++ K C VIRVIAHTQ +
Sbjct: 124 FTKYAKNYTN----GSIEKDLEELKKSCDVIRVIAHTQVR-------------------- 159
Query: 227 VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQ 286
++K LK QKKAH+MEIQ+NGG A K+ + E+ +PV VF Q
Sbjct: 160 -------------KVKGLK--QKKAHIMEIQVNGGDAAAKVDFGFALFEKTVPVDSVFQQ 204
Query: 287 DEMIDCIGVTKGKGFKG 303
DEMID IGVTKGKGF+G
Sbjct: 205 DEMIDLIGVTKGKGFQG 221
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 47/62 (75%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGG A K+ + E+ +PV VF QDEMID IGVTKGKGF+GV +
Sbjct: 165 KQKKAHIMEIQVNGGDAAAKVDFGFALFEKTVPVDSVFQQDEMIDLIGVTKGKGFQGVVT 224
Query: 374 RW 375
RW
Sbjct: 225 RW 226
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
G + D +K C RVI +RK+K LK QKKAH+MEIQ+NGG A K+ +
Sbjct: 134 GSIEKDLEELKKSC--DVIRVIAHTQVRKVKGLK--QKKAHIMEIQVNGGDAAAKVDFGF 189
Query: 583 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
E+ +PV VF QDEMID IGVTKGKGF+ V
Sbjct: 190 ALFEKTVPVDSVFQQDEMIDLIGVTKGKGFQGVV 223
>gi|388502726|gb|AFK39429.1| unknown [Lotus japonicus]
Length = 350
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 146/179 (81%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDP+K LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+ETPPMVIVGV+GYV+TP G+R+ TVWA+HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
W KS++KAF+K SK+++ + GKK + L K+ KY V+RV+AHTQ ++ + +++H
Sbjct: 122 WCKSKKKAFSKYSKQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAH 180
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/156 (59%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 183 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 241
Query: 490 FLCKKKY-LSMV--IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y L M ++A T++D TEK ITPMGGFPHYG V +DFLMIKG C+GPKKRV
Sbjct: 242 -LNKKIYRLGMAGDESHSAITEFDRTEKEITPMGGFPHYGIVKDDFLMIKGGCVGPKKRV 300
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
ITLR+ LLK+ + A L EI+L + K R
Sbjct: 301 ITLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGR 334
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 63/69 (91%)
Query: 360 IGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 419
IGVTKGKG++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 182 IGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE 241
Query: 420 LNKKIYRMG 428
LNKKIYR+G
Sbjct: 242 LNKKIYRLG 250
>gi|355749943|gb|EHH54281.1| hypothetical protein EGM_15087 [Macaca fascicularis]
Length = 201
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/237 (54%), Positives = 161/237 (67%), Gaps = 37/237 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
+HRKFSAPRHGS+ F +K S++H GKVK FPKDDP+K VHLTAF+GYKAGMT IV+E D
Sbjct: 2 AHRKFSAPRHGSLSFLTQKHSSKHHGKVKSFPKDDPSKLVHLTAFLGYKAGMTKIVQEVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV++G++GYV+TP GL++FK V AEH+S +R FYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVMGIVGYVQTPPGLQTFKIVLAEHISDASKRHFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS +KAFTK KK QD+ GKK + +D M KY +VIR IA+T
Sbjct: 122 WHKS-EKAFTKYCKKCQDEDGKKHLEKDFGSMKKYRQVIRGIAYT--------------- 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
QM LL Q KAHLMEIQ+ G++A K+ WA + LE
Sbjct: 166 ---------------------QMCLLPLCQNKAHLMEIQVKVGTMARKLDWACKRLE 201
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
R I +M LL Q KAHLMEIQ+ G++A K+ WA + LE
Sbjct: 160 RGIAYTQMCLLPLCQNKAHLMEIQVKVGTMARKLDWACKRLE 201
>gi|403335216|gb|EJY66782.1| 60S ribosomal protein L3 [Oxytricha trifallax]
Length = 397
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 175/267 (65%), Gaps = 38/267 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ PR GS+ + P++R+ HRG+++ FP+DD P+HLTAF+GYKAGMTH+ R +
Sbjct: 2 SHRKYECPRSGSLAYLPRRRTRHHRGRIRSFPRDDVKAPIHLTAFVGYKAGMTHVARHHE 61
Query: 99 -RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
R G K+ K++IVE VT++ETPPM IVG++GY+ETP GLR+ TVWA+H+ + +RRFYK
Sbjct: 62 KREGKKVIKRDIVEPVTVIETPPMKIVGLVGYIETPRGLRALATVWAQHIPDQVKRRFYK 121
Query: 158 NWYKSRQKAFTKASKKWQ-DKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
NW +S++KAFTK +++WQ D KK+I +DL ++ KYC+V+RV+ T
Sbjct: 122 NWCQSKKKAFTKYAQRWQEDDKSKKSIKRDLERIKKYCQVVRVLTST------------- 168
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
Q+ L RQ+KAHL+EIQ+NGG+VA K+ W+ E
Sbjct: 169 -----------------------QLDKLNFRQRKAHLIEIQVNGGTVAQKVDWSFAKFES 205
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V ++F +EMID IGVTKG G +G
Sbjct: 206 EVSVAEIFNDNEMIDTIGVTKGYGTEG 232
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 92/120 (76%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
L RQ+KAHL+EIQ+NGG+VA K+ W+ E + V ++F +EMID IGVTKG G +G
Sbjct: 173 LNFRQRKAHLIEIQVNGGTVAQKVDWSFAKFESEVSVAEIFNDNEMIDTIGVTKGYGTEG 232
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
V R+ ++PRKTH+GLRKV CIGAWHP+ V++TVAR GQ GYH RTE NKKIYR+GAG
Sbjct: 233 VIKRFGVTRMPRKTHRGLRKVGCIGAWHPAAVKWTVARRGQLGYHSRTEQNKKIYRVGAG 292
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 93/145 (64%), Gaps = 7/145 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ ++PRKTH+GLRKV CIGAWHP+ V++TVAR GQ GYH RTE
Sbjct: 223 GVTKGYGTEGVIKRFGVTRMPRKTHRGLRKVGCIGAWHPAAVKWTVARRGQLGYHSRTEQ 282
Query: 490 FLCKKKYLSMV-----IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
KK Y +KNNA+T+ D EK+ITP+GGFPHYG VNNDF+M+KGC MG KK
Sbjct: 283 --NKKIYRVGAGAVRGVKNNATTEADAIEKNITPLGGFPHYGVVNNDFVMVKGCVMGTKK 340
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQL 569
R + LRK + MEI+
Sbjct: 341 RPVILRKSIFPQTTNAALEKMEIKF 365
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D IK C RV+T ++ L RQ+KAHL+EIQ+NGG+VA K+ W+ E
Sbjct: 148 IKRDLERIKKYCQ--VVRVLTSTQLDKLNFRQRKAHLIEIQVNGGTVAQKVDWSFAKFES 205
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKG 611
+ V ++F +EMID IGVTKG G
Sbjct: 206 EVSVAEIFNDNEMIDTIGVTKGYG 229
>gi|256000845|gb|ACU51763.1| RE52161p [Drosophila melanogaster]
Length = 316
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 68 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 127
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 128 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 187
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 188 GAGIHTKDGKV 198
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 120 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 179
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 180 IN--KKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 237
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 238 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 278
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 96/144 (66%), Gaps = 36/144 (25%)
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
YKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+Q
Sbjct: 23 YKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQ--------------- 67
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 68 ---------------------IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQ 106
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 107 VSNVFGQDEMIDCVGVTKGKGFKG 130
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 46 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 102
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 103 KPIQVSNVFGQDEMIDCVGVTKGKGFK 129
>gi|209732596|gb|ACI67167.1| 60S ribosomal protein L3 [Salmo salar]
Length = 251
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/148 (79%), Positives = 136/148 (91%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VGV+GYVETP GLRSFKT++AEH+S EC+RRFY+N
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGVVGYVETPRGLRSFKTIFAEHISDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQD 186
WYKS++KAFTK KKWQD GKK + ++
Sbjct: 122 WYKSKKKAFTKYCKKWQDDEGKKQLVKN 149
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 54/70 (77%)
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
++KNNA+T+YDL+ KSITP+ GF H GEV NDF+M+KGC +G KKRV+TLRK L++ +
Sbjct: 146 LVKNNAATEYDLSNKSITPLRGFVHSGEVTNDFVMLKGCTIGVKKRVLTLRKSLLVQSSR 205
Query: 560 KKAHLMEIQL 569
+ ++++
Sbjct: 206 RATEKIDLKF 215
>gi|56462226|gb|AAV91396.1| ribosomal protein 24 [Lonomia obliqua]
Length = 280
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 122/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLLK+RQKKAH+MEIQ+NGG + DK+ WAR+HLE P+ +VFAQDEMIDCIGVTKGKG
Sbjct: 35 MKLLKQRQKKAHIMEIQINGGKIEDKVNWAREHLENQFPLTRVFAQDEMIDCIGVTKGKG 94
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 95 YKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRL 154
Query: 428 GAGIHTKDGKV 438
G GIHTKDGKV
Sbjct: 155 GQGIHTKDGKV 165
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 118/162 (72%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE
Sbjct: 88 GVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE- 146
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YD +EKSITPMGGFPHYGEVNNDF+MIKGCCM
Sbjct: 147 -MNKKIYRLGQGIHTKDGKVIKNNASTEYDFSEKSITPMGGFPHYGEVNNDFVMIKGCCM 205
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVITLRK L+ K+A L +I L + K R
Sbjct: 206 GPKKRVITLRKS--LRVHTKRAALEKINLKFIDTSSKFGHGR 245
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 86/133 (64%), Gaps = 36/133 (27%)
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKKWQD+LG+K+I +D +KM +YC VIR+IAHTQ
Sbjct: 1 SKKWQDELGRKSIEKDFKKMIRYCSVIRIIAHTQ-------------------------- 34
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
MKLLK+RQKKAH+MEIQ+NGG + DK+ WAR+HLE P+ +VFAQDEMI
Sbjct: 35 ----------MKLLKQRQKKAHIMEIQINGGKIEDKVNWAREHLENQFPLTRVFAQDEMI 84
Query: 291 DCIGVTKGKGFKG 303
DCIGVTKGKG+KG
Sbjct: 85 DCIGVTKGKGYKG 97
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF MI+ C + R+I +MKLLK+RQKKAH+MEIQ+NGG + DK+ WAR+HLE
Sbjct: 13 IEKDFKKMIRYCSV---IRIIAHTQMKLLKQRQKKAHIMEIQINGGKIEDKVNWAREHLE 69
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
P+ +VFAQDEMIDCIGVTKGKG+K
Sbjct: 70 NQFPLTRVFAQDEMIDCIGVTKGKGYK 96
>gi|78190703|gb|ABB29673.1| ribosomal protein 3 large subunit [Leucosolenia sp. AR-2003]
Length = 319
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/211 (57%), Positives = 147/211 (69%), Gaps = 36/211 (17%)
Query: 93 IVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECR 152
IVRE D+PGS+ +KKE+VEA TILETPPM+ VGV+GY+ETP GLR+FKTVWAEHLS ECR
Sbjct: 1 IVREVDKPGSRNHKKEVVEAATILETPPMIAVGVVGYIETPRGLRTFKTVWAEHLSDECR 60
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
RRFYKNW KS++KAF++AS++W GK +I D KM KYCKVIR+IA T
Sbjct: 61 RRFYKNWCKSKKKAFSRASQRWTSDEGKASIESDFAKMIKYCKVIRLIART--------- 111
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
Q+KL+ QKKAHLMEIQ+NGGS+ADKI +AR+
Sbjct: 112 ---------------------------QIKLVPISQKKAHLMEIQINGGSIADKINYARE 144
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
LE+ + V +VF QDEMID IGVT+GKGFKG
Sbjct: 145 RLEKHMHVNKVFGQDEMIDVIGVTRGKGFKG 175
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
+KL+ QKKAHLMEIQ+NGGS+ADKI +AR+ LE+ + V +VF QDEMID IGVT+GKG
Sbjct: 113 IKLVPISQKKAHLMEIQINGGSIADKINYARERLEKHMHVNKVFGQDEMIDVIGVTRGKG 172
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWH KKLPRKTHKGLRKVACIGAWHPSRVQ++VARAGQKGYHHRTE+NKK+YR+
Sbjct: 173 FKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVQYSVARAGQKGYHHRTEVNKKVYRV 232
Query: 428 GAGIHTKDGKV 438
GAG H + KV
Sbjct: 233 GAGYHQEGNKV 243
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/134 (70%), Positives = 105/134 (78%), Gaps = 11/134 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWH KKLPRKTHKGLRKVACIGAWHPSRVQ++VARAGQKGYHHRTE
Sbjct: 166 GVTRGKGFKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVQYSVARAGQKGYHHRTE- 224
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y + VIKNNA+T +DLT+KSITPMGGFPHYGE+ DFLM+KGC M
Sbjct: 225 -VNKKVYRVGAGYHQEGNKVIKNNAATGFDLTDKSITPMGGFPHYGELKQDFLMLKGCIM 283
Query: 541 GPKKRVITLRKMKL 554
GPKKRV+TLRK L
Sbjct: 284 GPKKRVVTLRKTLL 297
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Query: 526 GEVNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 584
+ +DF MIK C + R+I ++KL+ QKKAHLMEIQ+NGGS+ADKI +AR+
Sbjct: 89 ASIESDFAKMIKYCKV---IRLIARTQIKLVPISQKKAHLMEIQINGGSIADKINYARER 145
Query: 585 LEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
LE+ + V +VF QDEMID IGVT+GKGFK
Sbjct: 146 LEKHMHVNKVFGQDEMIDVIGVTRGKGFK 174
>gi|340503599|gb|EGR30155.1| ribosomal protein, putative [Ichthyophthirius multifiliis]
Length = 388
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 181/283 (63%), Gaps = 45/283 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APR GS+GF P++R+ HRG+ + FP+DD +K HLTAF G+KAGMTHI+R+ +
Sbjct: 2 SHRKFEAPRRGSLGFRPRRRTRHHRGRCRAFPRDDASKKSHLTAFTGFKAGMTHILRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +KKE+VEAVT++E PPM +VG++GY+ TP GLR+ TVW + L + +RRFYKN
Sbjct: 62 RPGSKNHKKEVVEAVTVIECPPMTVVGLVGYINTPRGLRALCTVWTKTLDKNTKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQD--LRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
W S++KAFTK + K QD + ++ KYC V+RVIAHT
Sbjct: 122 WTNSKKKAFTKHETNFNQK------EQDILINRIKKYCTVVRVIAHT------------- 162
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
N+NK L RQKK H++EIQ+NGG+VA K+ +A+ E+
Sbjct: 163 ---------NMNK--------------LNFRQKKNHILEIQVNGGTVAQKVEFAKGLFEK 199
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
+ V Q+F ++EMID IGVTKGKGF G ++ +K QKK H
Sbjct: 200 EVTVDQLFQENEMIDVIGVTKGKGFAG-VVKRFGVKHLQKKTH 241
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 97/123 (78%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M L RQKK H++EIQ+NGG+VA K+ +A+ E+ + V Q+F ++EMID IGVTKGKG
Sbjct: 164 MNKLNFRQKKNHILEIQVNGGTVAQKVEFAKGLFEKEVTVDQLFQENEMIDVIGVTKGKG 223
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F GV R+ K L +KTH+G RKV CIGAWHPSR++FTVARAGQ GYHHRTE+NKK+YR+
Sbjct: 224 FAGVVKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVARAGQLGYHHRTEINKKVYRV 283
Query: 428 GAG 430
G G
Sbjct: 284 GKG 286
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 89/125 (71%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K L +KTH+G RKV CIGAWHPSR++FTVARAGQ GYHHRTE+
Sbjct: 217 GVTKGKGFAGVVKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVARAGQLGYHHRTEI 276
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ KNNAST DLT+K ITP+GGFPHYG V NDF+MIKGCC+GPKKR + L
Sbjct: 277 NKKVYRVGKGDQKNNASTQGDLTDKQITPLGGFPHYGVVKNDFIMIKGCCVGPKKRPLVL 336
Query: 550 RKMKL 554
RK L
Sbjct: 337 RKSLL 341
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI M L RQKK H++EIQ+NGG+VA K+ +A+ E+ + V Q+F ++EMID I
Sbjct: 157 RVIAHTNMNKLNFRQKKNHILEIQVNGGTVAQKVEFAKGLFEKEVTVDQLFQENEMIDVI 216
Query: 605 GVTKGKGFKECV 616
GVTKGKGF V
Sbjct: 217 GVTKGKGFAGVV 228
>gi|432102534|gb|ELK30105.1| 60S ribosomal protein L3-like protein [Myotis davidii]
Length = 271
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/166 (72%), Positives = 143/166 (86%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 45 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSRPVHLTAFLGYKAGMTHTLREVH 104
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 105 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 164
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ 204
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HTQ
Sbjct: 165 WHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQ 210
>gi|407850972|gb|EKG05117.1| ribosomal protein L13, putative [Trypanosoma cruzi]
Length = 462
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 166/265 (62%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+V+ FPKDDP++ HLT+F+ +KAGMTHIVR+ D
Sbjct: 36 SHCKFEHPRHGHLGFLPRKRSRQIRGRVRSFPKDDPSQKPHLTSFMVFKAGMTHIVRDVD 95
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 96 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 155
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + G+ A+ L+ AK +IRV+AHTQ ++ L N+
Sbjct: 156 WKQSAQLAFTKRKQFARTTEGRLAEARTLKAFAKKADIIRVVAHTQLRK--LRNNRVG-- 211
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++A+KI A+ LE+ +
Sbjct: 212 -----------------------------VKKAHVSEIQINGGTIAEKIELAKSLLEKEV 242
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q E D VTKG GF G
Sbjct: 243 RIDSIFQQSETCDVCAVTKGHGFTG 267
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 91/126 (72%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG++A+KI A+ LE+ + + +F Q E D VTKG GF GV RW
Sbjct: 213 KKAHVSEIQINGGTIAEKIELAKSLLEKEVRIDSIFQQSETCDVCAVTKGHGFTGVVKRW 272
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT LNKKIY++G + +
Sbjct: 273 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP 332
Query: 436 GKVSVT 441
+ + T
Sbjct: 333 NQATTT 338
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 87/121 (71%), Gaps = 8/121 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT L KK
Sbjct: 264 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTH--LNKKI 321
Query: 496 Y-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y +SM N A+T YDLT KSITPMGGF YG V ND++M+KG GP++RVITLR
Sbjct: 322 YQLGRAVSME-PNQATTTYDLTAKSITPMGGFVGYGTVRNDYIMLKGSVAGPRRRVITLR 380
Query: 551 K 551
+
Sbjct: 381 R 381
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++A+KI A+ LE+ + + +F Q E D VTK
Sbjct: 202 LRKLRNNRVGVKKAHVSEIQINGGTIAEKIELAKSLLEKEVRIDSIFQQSETCDVCAVTK 261
Query: 609 GKGFKECV 616
G GF V
Sbjct: 262 GHGFTGVV 269
>gi|157874311|ref|XP_001685639.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|157876054|ref|XP_001686391.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|157876056|ref|XP_001686392.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|157876058|ref|XP_001686393.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|157876060|ref|XP_001686394.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|66476128|gb|AAY51372.1| ribosomal protein L3 [Leishmania major]
gi|68128711|emb|CAJ08844.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|68129465|emb|CAJ08008.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|68129466|emb|CAJ08009.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|68129467|emb|CAJ08010.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
gi|68129468|emb|CAJ08011.1| putative ribosomal protein L3 [Leishmania major strain Friedlin]
Length = 419
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/265 (49%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDD T+ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARAFPKDDATQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMVIVG++GY +TP GL++ TVWA H S E RRR+YKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVIVGIVGYRQTPVGLKTIGTVWAHHTSVEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AF++ + K GK A+ L AK VIRVIAHTQ ++ H+
Sbjct: 122 WKQSAQLAFSRQKQFANTKEGKVAEARTLNAFAKKASVIRVIAHTQLRKLRNHRVG---- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGGSVA KIA A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVQEIQVNGGSVAAKIALAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q E D VTKG G +G
Sbjct: 209 RVDSVFQQSEACDVCSVTKGHGTEG 233
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 92/126 (73%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGGSVA KIA A+ LE+ + V VF Q E D VTKG G +GV RW
Sbjct: 179 KKAHVQEIQVNGGSVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTKGHGTEGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+LNKKIY++G + +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQLNKKIYQIGRSVAVEP 298
Query: 436 GKVSVT 441
+ + T
Sbjct: 299 NQATTT 304
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 89/120 (74%), Gaps = 6/120 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+ L KK
Sbjct: 230 GTEGVVKRWGVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQ--LNKKI 287
Query: 496 Y---LSMVIK-NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y S+ ++ N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RV+TLR+
Sbjct: 288 YQIGRSVAVEPNQATTTYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVSGPRRRVMTLRR 347
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 43/68 (63%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGGSVA KIA A+ LE+ + V VF Q E D VTK
Sbjct: 168 LRKLRNHRVGVKKAHVQEIQVNGGSVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTK 227
Query: 609 GKGFKECV 616
G G + V
Sbjct: 228 GHGTEGVV 235
>gi|290991133|ref|XP_002678190.1| ribosomal protein L3 [Naegleria gruberi]
gi|284091801|gb|EFC45446.1| ribosomal protein L3 [Naegleria gruberi]
Length = 416
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/265 (48%), Positives = 175/265 (66%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P+K++ R RG+VK FPKDD K HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEAPRHGSLGFLPRKKARRERGRVKAFPKDDQKKATHLTAFLGYKAGMTHIVREVN 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE ++AVTI+E PPMV+VGV+GY +TP GL++ TVWA+++S E RR +YK+
Sbjct: 62 KPGSKMHKKEGLDAVTIIEAPPMVVVGVVGYKQTPTGLKAIGTVWAKNISNEFRRVYYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S+++AFTK +K + ++ ++ Q L K VIR++AHTQ + + N
Sbjct: 122 WCRSKKRAFTKLTKTYLEQAAQEKRTQALESFKKNADVIRIVAHTQPSKVTATNN----- 176
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG+V +KI +A +LE+ +
Sbjct: 177 ------------------------------KKAHVAEIQVNGGTVDEKIKFAVANLEKLV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VFA+DE ID I V+KGKG KG
Sbjct: 207 SVDSVFAKDEPIDVIAVSKGKGTKG 231
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 101/134 (75%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
K+ KKAH+ EIQ+NGG+V +KI +A +LE+ + V VFA+DE ID I V+KGKG
Sbjct: 170 KVTATNNKKAHVAEIQVNGGTVDEKIKFAVANLEKLVSVDSVFAKDEPIDVIAVSKGKGT 229
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGV SRW ++LPRKTH+GLRKVACIGAWHP+RV F+VARAGQKG+ HR NKKIYR+G
Sbjct: 230 KGVVSRWGVRRLPRKTHRGLRKVACIGAWHPARVSFSVARAGQKGFFHRVHQNKKIYRIG 289
Query: 429 AGIHTKDGKVSVTS 442
T++GK S +
Sbjct: 290 KSNKTEEGKKSAMT 303
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 87/120 (72%), Gaps = 4/120 (3%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT----ELFL 491
G V SRW ++LPRKTH+GLRKVACIGAWHP+RV F+VARAGQKG+ HR +++
Sbjct: 228 GTKGVVSRWGVRRLPRKTHRGLRKVACIGAWHPARVSFSVARAGQKGFFHRVHQNKKIYR 287
Query: 492 CKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
K + K +A TD+DLTEK + PMGGF +YG V ND++M+KG GP +RV+TLRK
Sbjct: 288 IGKSNKTEEGKKSAMTDFDLTEKDVNPMGGFVNYGVVENDWVMVKGNVQGPPRRVVTLRK 347
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 612
K+ KKAH+ EIQ+NGG+V +KI +A +LE+ + V VFA+DE ID I V+KGKG
Sbjct: 170 KVTATNNKKAHVAEIQVNGGTVDEKIKFAVANLEKLVSVDSVFAKDEPIDVIAVSKGKGT 229
Query: 613 KECV 616
K V
Sbjct: 230 KGVV 233
>gi|407411575|gb|EKF33582.1| ribosomal protein L13, putative [Trypanosoma cruzi marinkellei]
Length = 428
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 166/265 (62%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+V+ FPKDDP++ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRVRSFPKDDPSQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + G+ A+ L+ AK +IRV+AHTQ ++ L N+
Sbjct: 122 WKQSAQLAFTKRKQFARTAEGRLAEARTLKAFAKKADIIRVVAHTQLRK--LRNNRVG-- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++A+KI A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVSEIQINGGTIAEKIELAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q E D VTKG GF G
Sbjct: 209 RIDSIFQQSETCDVCAVTKGHGFTG 233
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 91/126 (72%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG++A+KI A+ LE+ + + +F Q E D VTKG GF GV RW
Sbjct: 179 KKAHVSEIQINGGTIAEKIELAKSLLEKEVRIDSIFQQSETCDVCAVTKGHGFTGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT LNKKIY++G + +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP 298
Query: 436 GKVSVT 441
+ + T
Sbjct: 299 NQATTT 304
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 87/121 (71%), Gaps = 8/121 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT L KK
Sbjct: 230 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTH--LNKKI 287
Query: 496 Y-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y +SM N A+T YDLT KSITPMGGF YG V ND++M+KG GP++RVITLR
Sbjct: 288 YQLGRAVSME-PNQATTTYDLTAKSITPMGGFVGYGTVRNDYIMLKGSVAGPRRRVITLR 346
Query: 551 K 551
+
Sbjct: 347 R 347
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++A+KI A+ LE+ + + +F Q E D VTK
Sbjct: 168 LRKLRNNRVGVKKAHVSEIQINGGTIAEKIELAKSLLEKEVRIDSIFQQSETCDVCAVTK 227
Query: 609 GKGFKECV 616
G GF V
Sbjct: 228 GHGFTGVV 235
>gi|146097010|ref|XP_001468006.1| putative ribosomal protein L3 [Leishmania infantum JPCM5]
gi|134072372|emb|CAM71080.1| putative ribosomal protein L3 [Leishmania infantum JPCM5]
Length = 419
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/265 (49%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDD T+ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARAFPKDDATQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMVIVG++GY +TP GL++ TVWA H S E RRR+YKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVIVGIVGYRQTPVGLKTIGTVWAHHTSVEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AF++ + K GK A+ L AK VIRVIAHTQ ++ H+
Sbjct: 122 WKQSAQLAFSRQKQFANTKEGKVAEARTLNAFAKKASVIRVIAHTQLRKLRNHRVG---- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGGSVA KIA A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVQEIQVNGGSVAAKIALAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q E D VTKG G +G
Sbjct: 209 RVDSVFQQSEACDVCSVTKGHGTEG 233
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 92/126 (73%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGGSVA KIA A+ LE+ + V VF Q E D VTKG G +GV RW
Sbjct: 179 KKAHVQEIQVNGGSVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTKGHGTEGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+LNKKIY++G + +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQLNKKIYQIGRSVAVEP 298
Query: 436 GKVSVT 441
+ + T
Sbjct: 299 NQATTT 304
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 89/120 (74%), Gaps = 6/120 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+ L KK
Sbjct: 230 GTEGVVKRWGVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQ--LNKKI 287
Query: 496 Y---LSMVIK-NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y S+ ++ N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RV+TLR+
Sbjct: 288 YQIGRSVAVEPNQATTTYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVSGPRRRVMTLRR 347
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 43/68 (63%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGGSVA KIA A+ LE+ + V VF Q E D VTK
Sbjct: 168 LRKLRNHRVGVKKAHVQEIQVNGGSVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTK 227
Query: 609 GKGFKECV 616
G G + V
Sbjct: 228 GHGTEGVV 235
>gi|71652016|ref|XP_814673.1| ribosomal protein L3 [Trypanosoma cruzi strain CL Brener]
gi|71652018|ref|XP_814674.1| ribosomal protein L3 [Trypanosoma cruzi strain CL Brener]
gi|70879667|gb|EAN92822.1| ribosomal protein L3, putative [Trypanosoma cruzi]
gi|70879668|gb|EAN92823.1| ribosomal protein L3, putative [Trypanosoma cruzi]
Length = 428
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 166/265 (62%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+V+ FPKDDP++ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRVRSFPKDDPSQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + G+ A+ L+ AK +IRV+AHTQ ++ L N+
Sbjct: 122 WKQSAQLAFTKRKQFARTTEGRLAEARTLKAFAKKADIIRVVAHTQLRK--LRNNRVG-- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++A+KI A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVSEIQINGGTIAEKIELAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q E D VTKG GF G
Sbjct: 209 RIDSIFQQSETCDVCAVTKGHGFTG 233
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 91/126 (72%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG++A+KI A+ LE+ + + +F Q E D VTKG GF GV RW
Sbjct: 179 KKAHVSEIQINGGTIAEKIELAKSLLEKEVRIDSIFQQSETCDVCAVTKGHGFTGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT LNKKIY++G + +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP 298
Query: 436 GKVSVT 441
+ + T
Sbjct: 299 NQATTT 304
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 87/121 (71%), Gaps = 8/121 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT L KK
Sbjct: 230 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTH--LNKKI 287
Query: 496 Y-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y +SM N A+T YDLT KSITPMGGF YG V ND++M+KG GP++RVITLR
Sbjct: 288 YQLGRAVSME-PNQATTTYDLTAKSITPMGGFVGYGTVRNDYIMLKGSVAGPRRRVITLR 346
Query: 551 K 551
+
Sbjct: 347 R 347
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++A+KI A+ LE+ + + +F Q E D VTK
Sbjct: 168 LRKLRNNRVGVKKAHVSEIQINGGTIAEKIELAKSLLEKEVRIDSIFQQSETCDVCAVTK 227
Query: 609 GKGFKECV 616
G GF V
Sbjct: 228 GHGFTGVV 235
>gi|146097013|ref|XP_001468007.1| putative ribosomal protein L3 [Leishmania infantum JPCM5]
gi|146099403|ref|XP_001468635.1| putative ribosomal protein L3 [Leishmania infantum JPCM5]
gi|134072373|emb|CAM71081.1| putative ribosomal protein L3 [Leishmania infantum JPCM5]
gi|134073003|emb|CAM71722.1| putative ribosomal protein L3 [Leishmania infantum JPCM5]
Length = 419
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/265 (49%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDD T+ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARAFPKDDATQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMVIVG++GY +TP GL++ TVWA H S E RRR+YKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVIVGIVGYRQTPVGLKTIGTVWAHHTSVEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AF++ + K GK A+ L AK VIRVIAHTQ ++ H+
Sbjct: 122 WKQSAQLAFSRQKQFANTKEGKVAEARTLNAFAKKASVIRVIAHTQLRKLRNHRVG---- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG+VA KIA A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVQEIQINGGNVAAKIALAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q E D VTKG G +G
Sbjct: 209 RVDSVFQQSEACDVCSVTKGHGTEG 233
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 92/126 (73%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG+VA KIA A+ LE+ + V VF Q E D VTKG G +GV RW
Sbjct: 179 KKAHVQEIQINGGNVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTKGHGTEGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+LNKKIY++G + +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQLNKKIYQIGRSVAVEP 298
Query: 436 GKVSVT 441
+ + T
Sbjct: 299 NQATTT 304
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 89/120 (74%), Gaps = 6/120 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+ L KK
Sbjct: 230 GTEGVVKRWGVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQ--LNKKI 287
Query: 496 Y---LSMVIK-NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y S+ ++ N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RV+TLR+
Sbjct: 288 YQIGRSVAVEPNQATTTYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVSGPRRRVMTLRR 347
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG+VA KIA A+ LE+ + V VF Q E D VTK
Sbjct: 168 LRKLRNHRVGVKKAHVQEIQINGGNVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTK 227
Query: 609 GKGFKECV 616
G G + V
Sbjct: 228 GHGTEGVV 235
>gi|296236923|ref|XP_002763539.1| PREDICTED: 60S ribosomal protein L3 isoform 2 [Callithrix jacchus]
Length = 354
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 105/128 (82%), Positives = 123/128 (96%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKA 166
W+KS++KA
Sbjct: 122 WHKSKKKA 129
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 114/126 (90%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +KKAHLMEIQ+NGG+V++K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KGVT
Sbjct: 124 KSKKKAHLMEIQVNGGTVSEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT 183
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIH 432
SRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++G G
Sbjct: 184 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 243
Query: 433 TKDGKV 438
KDGK+
Sbjct: 244 IKDGKL 249
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 172 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 231
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 232 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 291
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 292 KKRVLTLRKSLLVQTKRRALEKIDLKF 318
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 51/58 (87%)
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
K +KKAHLMEIQ+NGG+V++K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 124 KSKKKAHLMEIQVNGGTVSEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 181
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
K +KKAHLMEIQ+NGG+V++K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+K
Sbjct: 124 KSKKKAHLMEIQVNGGTVSEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 180
>gi|76496472|ref|NP_001029025.1| 60S ribosomal protein L3 isoform b [Homo sapiens]
gi|397502003|ref|XP_003821662.1| PREDICTED: 60S ribosomal protein L3 isoform 2 [Pan paniscus]
gi|426394516|ref|XP_004063541.1| PREDICTED: 60S ribosomal protein L3 isoform 2 [Gorilla gorilla
gorilla]
Length = 354
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 105/128 (82%), Positives = 123/128 (96%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKA 166
W+KS++KA
Sbjct: 122 WHKSKKKA 129
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 114/126 (90%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KGVT
Sbjct: 124 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT 183
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIH 432
SRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++G G
Sbjct: 184 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 243
Query: 433 TKDGKV 438
KDGK+
Sbjct: 244 IKDGKL 249
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 172 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 231
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 232 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 291
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 292 KKRVLTLRKSLLVQTKRRALEKIDLKF 318
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 51/58 (87%)
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 124 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 181
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+K
Sbjct: 124 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 180
>gi|358346097|ref|XP_003637108.1| hypothetical protein MTR_072s1001, partial [Medicago truncatula]
gi|355503043|gb|AES84246.1| hypothetical protein MTR_072s1001, partial [Medicago truncatula]
Length = 349
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/237 (54%), Positives = 163/237 (68%), Gaps = 35/237 (14%)
Query: 67 KCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGV 126
K FPKDDPTKP LTAF+GYK+GMTHIVRE ++PGSK++KKE EAVTI+ETPP+V+VGV
Sbjct: 1 KAFPKDDPTKPCRLTAFVGYKSGMTHIVREVEKPGSKLHKKETCEAVTIIETPPIVVVGV 60
Query: 127 IGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQD 186
+GYV+TP GLR+ TVWA+HLS++ +RRFYKNW KS++KAFTK +KK++ GKK I
Sbjct: 61 VGYVKTPRGLRTLNTVWAQHLSEDVKRRFYKNWAKSKKKAFTKYTKKYETDEGKKDIQTQ 120
Query: 187 LRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKK 246
L K+ KY VIRV+AHTQ + KL
Sbjct: 121 LEKLKKYATVIRVLAHTQVR-----------------------------------KLKGL 145
Query: 247 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID IGVTKGKG++G
Sbjct: 146 KQKKAHLMEIQVNGGTVNQKVDYAYNFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEG 202
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 99/120 (82%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID IGVTKGKG+
Sbjct: 141 KLKGLKQKKAHLMEIQVNGGTVNQKVDYAYNFFEKQIPVDAVFQKDEMIDIIGVTKGKGY 200
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++G
Sbjct: 201 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVG 260
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 109/163 (66%), Gaps = 11/163 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTEL
Sbjct: 193 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEL 252
Query: 490 FLCKKKYLSMVIKNN-----ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K + V K + A T++D TEK ITPMGGFPHYG VN+D+LMIKG C+GPKK
Sbjct: 253 ----NKKIYKVGKQDQESHTAITEFDRTEKDITPMGGFPHYGVVNHDYLMIKGGCVGPKK 308
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
RV+TLR+ LLK+ + A L +I+L + K R Q
Sbjct: 309 RVVTLRQ-SLLKQTSRLA-LEDIKLKFIDTSSKFGHGRFQTTQ 349
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK+K LK QKKAHLMEIQ+NGG+V K+ +A E+ IPV VF +DEMID IGVTK
Sbjct: 139 VRKLKGLK--QKKAHLMEIQVNGGTVNQKVDYAYNFFEKQIPVDAVFQKDEMIDIIGVTK 196
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 197 GKGYEGVV 204
>gi|401427361|ref|XP_003878164.1| putative ribosomal protein L3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494411|emb|CBZ29713.1| putative ribosomal protein L3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 419
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/265 (48%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDD T+ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRTRAFPKDDATQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMVIVG++GY +TP GL++ TVWA H S E RRR+YKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVIVGIVGYRQTPVGLKTIGTVWAHHTSVEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AF++ + K G+ A+ L AK VIRVIAHTQ ++ H+
Sbjct: 122 WKQSAQLAFSRQKQFANTKEGRVVEARTLNAFAKKASVIRVIAHTQLRKLRNHRVG---- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG+VA KIA A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVQEIQINGGNVAAKIALAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q E D VTKG G +G
Sbjct: 209 RVDSVFQQSEACDVCSVTKGHGTEG 233
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 92/126 (73%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG+VA KIA A+ LE+ + V VF Q E D VTKG G +GV RW
Sbjct: 179 KKAHVQEIQINGGNVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTKGHGTEGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+LNKKIY++G + +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQLNKKIYQIGRSVAVEP 298
Query: 436 GKVSVT 441
+ + T
Sbjct: 299 NQATTT 304
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 89/120 (74%), Gaps = 6/120 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+ L KK
Sbjct: 230 GTEGVVKRWGVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQ--LNKKI 287
Query: 496 Y---LSMVIK-NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y S+ ++ N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RV+TLR+
Sbjct: 288 YQIGRSVAVEPNQATTTYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVSGPRRRVMTLRR 347
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG+VA KIA A+ LE+ + V VF Q E D VTK
Sbjct: 168 LRKLRNHRVGVKKAHVQEIQINGGNVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTK 227
Query: 609 GKGFKECV 616
G G + V
Sbjct: 228 GHGTEGVV 235
>gi|72387810|ref|XP_844329.1| ribosomal protein L3 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359480|gb|AAX79917.1| ribosomal protein L3, putative [Trypanosoma brucei]
gi|70800862|gb|AAZ10770.1| ribosomal protein L3, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 480
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDDP++ HLT+F+ YKAGMTHIVR+ D
Sbjct: 53 SHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVD 112
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 113 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 172
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + G+ A+ L+ K +IRV+AHTQ ++ L N+
Sbjct: 173 WKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRK--LRNNRVG-- 228
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++A KI A+ LE+ +
Sbjct: 229 -----------------------------VKKAHVSEIQINGGTIAQKIELAKSLLEKEV 259
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF Q E D VTKG GF G
Sbjct: 260 RIDSVFQQSEACDVCAVTKGHGFTG 284
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 86/116 (74%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTKG GF GV RW
Sbjct: 230 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 289
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT LNKKIY++G +
Sbjct: 290 GVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAV 345
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 87/121 (71%), Gaps = 8/121 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT L KK
Sbjct: 281 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTH--LNKKI 338
Query: 496 Y-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y +SM N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RVITLR
Sbjct: 339 YQLGRAVSME-PNQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLR 397
Query: 551 K 551
+
Sbjct: 398 R 398
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTK
Sbjct: 219 LRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTK 278
Query: 609 GKGFKECV 616
G GF V
Sbjct: 279 GHGFTGVV 286
>gi|261327490|emb|CBH10465.1| ribosomal protein L3, putative [Trypanosoma brucei gambiense
DAL972]
Length = 480
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDDP++ HLT+F+ YKAGMTHIVR+ D
Sbjct: 53 SHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVD 112
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 113 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 172
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + G+ A+ L+ K +IRV+AHTQ ++ L N+
Sbjct: 173 WKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRK--LRNNRVG-- 228
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++A KI A+ LE+ +
Sbjct: 229 -----------------------------VKKAHVSEIQINGGTIAQKIELAKSLLEKEV 259
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF Q E D VTKG GF G
Sbjct: 260 RIDSVFQQSEACDVCAVTKGHGFTG 284
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 86/116 (74%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTKG GF GV RW
Sbjct: 230 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 289
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT LNKKIY++G +
Sbjct: 290 GVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAV 345
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 87/121 (71%), Gaps = 8/121 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT L KK
Sbjct: 281 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTH--LNKKI 338
Query: 496 Y-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y +SM N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RVITLR
Sbjct: 339 YQLGRAVSME-PNQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLR 397
Query: 551 K 551
+
Sbjct: 398 R 398
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTK
Sbjct: 219 LRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTK 278
Query: 609 GKGFKECV 616
G GF V
Sbjct: 279 GHGFTGVV 286
>gi|401428725|ref|XP_003878845.1| putative ribosomal protein L3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|401428727|ref|XP_003878846.1| putative ribosomal protein L3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495094|emb|CBZ30398.1| putative ribosomal protein L3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495095|emb|CBZ30399.1| putative ribosomal protein L3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 419
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/265 (48%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDD T+ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARAFPKDDATQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMVIVG++GY +TP GL++ TVWA H S E RRR+YKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVIVGIVGYRQTPVGLKTIGTVWAHHTSVEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AF++ + K G+ A+ L AK VIRVIAHTQ ++ H+
Sbjct: 122 WKQSAQLAFSRQKQFANTKEGRIAEARTLNAFAKKASVIRVIAHTQLRKLRNHRVG---- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG+VA KIA A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVQEIQINGGNVAAKIALAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q E D VTKG G +G
Sbjct: 209 RVDSVFQQSEACDVCSVTKGHGTEG 233
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 92/126 (73%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG+VA KIA A+ LE+ + V VF Q E D VTKG G +GV RW
Sbjct: 179 KKAHVQEIQINGGNVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTKGHGTEGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+LNKKIY++G + +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQLNKKIYQIGRSVAVEP 298
Query: 436 GKVSVT 441
+ + T
Sbjct: 299 NQATTT 304
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 89/120 (74%), Gaps = 6/120 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT+ L KK
Sbjct: 230 GTEGVVKRWGVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTQ--LNKKI 287
Query: 496 Y---LSMVIK-NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y S+ ++ N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RV+TLR+
Sbjct: 288 YQIGRSVAVEPNQATTTYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVSGPRRRVMTLRR 347
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG+VA KIA A+ LE+ + V VF Q E D VTK
Sbjct: 168 LRKLRNHRVGVKKAHVQEIQINGGNVAAKIALAKSLLEKEVRVDSVFQQSEACDVCSVTK 227
Query: 609 GKGFKECV 616
G G + V
Sbjct: 228 GHGTEGVV 235
>gi|342180584|emb|CCC90060.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 429
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/265 (47%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDDP++ HLT+F+ YKAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG +GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVVVGFVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + G+ A+ L+ AK +IRV+AHTQ ++ L N+
Sbjct: 122 WKQSAQLAFTKRKQFARTTEGRLAEARTLKAFAKKADIIRVVAHTQLRK--LRNNRVG-- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++A KI A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVSEIQINGGTIAQKIELAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF Q E D VTKG GF G
Sbjct: 209 RIDSVFQQSEACDVCAVTKGHGFTG 233
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 90/126 (71%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTKG GF GV RW
Sbjct: 179 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT LNKKIY++G + +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP 298
Query: 436 GKVSVT 441
+ + +
Sbjct: 299 NQATTS 304
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 87/121 (71%), Gaps = 8/121 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT L KK
Sbjct: 230 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTH--LNKKI 287
Query: 496 Y-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y +SM N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RVITLR
Sbjct: 288 YQLGRAVSME-PNQATTSYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLR 346
Query: 551 K 551
+
Sbjct: 347 R 347
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTK
Sbjct: 168 LRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTK 227
Query: 609 GKGFKECV 616
G GF V
Sbjct: 228 GHGFTGVV 235
>gi|72387812|ref|XP_844330.1| ribosomal protein L3, mitochondrial [Trypanosoma brucei TREU927]
gi|449802250|pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
gi|62359481|gb|AAX79918.1| ribosomal protein L3, mitochondrial, putative [Trypanosoma brucei]
gi|70800863|gb|AAZ10771.1| ribosomal protein L3, mitochondrial, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261327491|emb|CBH10466.1| ribosomal protein L3, mitochondrial, putative [Trypanosoma brucei
gambiense DAL972]
Length = 429
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 163/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDDP++ HLT+F+ YKAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + G+ A+ L+ K +IRV+AHTQ ++ L N+
Sbjct: 122 WKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRK--LRNNRVG-- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++A KI A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVSEIQINGGTIAQKIELAKSLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF Q E D VTKG GF G
Sbjct: 209 RIDSVFQQSEACDVCAVTKGHGFTG 233
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 86/116 (74%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTKG GF GV RW
Sbjct: 179 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT LNKKIY++G +
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAV 294
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 87/121 (71%), Gaps = 8/121 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT L KK
Sbjct: 230 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTH--LNKKI 287
Query: 496 Y-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y +SM N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RVITLR
Sbjct: 288 YQLGRAVSME-PNQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLR 346
Query: 551 K 551
+
Sbjct: 347 R 347
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTK
Sbjct: 168 LRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTK 227
Query: 609 GKGFKECV 616
G GF V
Sbjct: 228 GHGFTGVV 235
>gi|284073160|gb|ADB77819.1| 60S ribosomal protein L3 [Klebsormidium flaccidum]
Length = 204
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/240 (51%), Positives = 161/240 (67%), Gaps = 38/240 (15%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
F RHGS+GF PKKR+ R RGKVK + KDDP+K L AF+GYKAGMTHI+R+ D+PGS
Sbjct: 1 FEHARHGSLGFLPKKRAKRIRGKVKSWAKDDPSKAPQLQAFLGYKAGMTHIMRDVDKPGS 60
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKS 162
K++KKE EAVTI+ETPPMVIVGV+GY++TP GLRS TVWA+HL + +RRFYK + +S
Sbjct: 61 KLHKKETCEAVTIVETPPMVIVGVVGYIKTPRGLRSLATVWAQHLDESVKRRFYKRFGQS 120
Query: 163 RQKAFTKASK-KWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
++KAFTK K K+ D GKK + DL ++ KYC V+RV+AHT
Sbjct: 121 KKKAFTKYVKSKYGDGEGKKGVDSDLERIKKYCSVVRVLAHT------------------ 162
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
Q+KL+K QKKAHLME+Q+NGGSVADK+ +A ++ E+ + V
Sbjct: 163 ------------------QVKLIKGIGQKKAHLMEVQINGGSVADKVDFAVKYFEKKVGV 204
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLE 586
V++D IK C RV+ ++KL+K QKKAHLME+Q+NGGSVADK+ +A ++ E
Sbjct: 142 VDSDLERIKKYC--SVVRVLAHTQVKLIKGIGQKKAHLMEVQINGGSVADKVDFAVKYFE 199
Query: 587 QPIPV 591
+ + V
Sbjct: 200 KKVGV 204
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 347
QKKAHLME+Q+NGGSVADK+ +A ++ E+ + V
Sbjct: 172 QKKAHLMEVQINGGSVADKVDFAVKYFEKKVGV 204
>gi|78190647|gb|ABB29645.1| ribosomal protein 3 large subunit [Suberites fuscus]
Length = 313
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 151/212 (71%), Gaps = 37/212 (17%)
Query: 93 IVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECR 152
I+RE +RPGSK +K E+VEAVTI+ETPPM++VGV+GY+ETP GLR KT++A+HL+ ECR
Sbjct: 1 ILREMNRPGSKSHKHEVVEAVTIIETPPMMVVGVVGYIETPRGLRPIKTIFAQHLNDECR 60
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
RRFYKNW+ S++KAF+KAS +W+D+ G+K+I D K+ KYCKVIRVI HT
Sbjct: 61 RRFYKNWFNSKKKAFSKASGRWKDEAGQKSIQADFDKLKKYCKVIRVICHT--------- 111
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKK-RQKKAHLMEIQLNGGSVADKIAWAR 271
Q++LL RQKKAH+MEIQ+NGGS++DK+ WA+
Sbjct: 112 ---------------------------QVELLNGVRQKKAHIMEIQVNGGSISDKVDWAK 144
Query: 272 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+H+E+ IP+ +F +DEMID IGVTKGKGFKG
Sbjct: 145 EHMEKAIPIKDLFNKDEMIDIIGVTKGKGFKG 176
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/115 (80%), Positives = 107/115 (93%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
RQKKAH+MEIQ+NGGS++DK+ WA++H+E+ IP+ +F +DEMID IGVTKGKGFKGVTS
Sbjct: 120 RQKKAHIMEIQVNGGSISDKVDWAKEHMEKAIPIKDLFNKDEMIDIIGVTKGKGFKGVTS 179
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RWH KKLPRKTHKGLRKVACIGAWHPSRV F+VARAGQKGYHHRTE+NKKIYR+G
Sbjct: 180 RWHCKKLPRKTHKGLRKVACIGAWHPSRVSFSVARAGQKGYHHRTEINKKIYRIG 234
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 105/143 (73%), Gaps = 6/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWH KKLPRKTHKGLRKVACIGAWHPSRV F+VARAGQKGYHHRTE+
Sbjct: 167 GVTKGKGFKGVTSRWHCKKLPRKTHKGLRKVACIGAWHPSRVSFSVARAGQKGYHHRTEI 226
Query: 490 FLCKKKYLSMVIKN---NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK + K NA+T++D TEK ITP+GGFPHYG V NDF+M+KG +GPK+RV
Sbjct: 227 ---NKKIYRIGDKEDNANAATEFDPTEKRITPVGGFPHYGTVKNDFVMLKGAVVGPKRRV 283
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
IT+RK ++ +K ++++
Sbjct: 284 ITMRKSLVVNVTRKNKEEVKLKF 306
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ DF +K C RVI +++LL RQKKAH+MEIQ+NGGS++DK+ WA++H+E
Sbjct: 91 IQADFDKLKKYCKVI--RVICHTQVELLNGVRQKKAHIMEIQVNGGSISDKVDWAKEHME 148
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ IP+ +F +DEMID IGVTKGKGFK
Sbjct: 149 KAIPIKDLFNKDEMIDIIGVTKGKGFK 175
>gi|340053197|emb|CCC47485.1| putative ribosomal protein L3, fragment [Trypanosoma vivax Y486]
Length = 646
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/265 (47%), Positives = 162/265 (61%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDDP++ HLT+F+ YKAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKAIGTVWAHHTSVEFRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + K G+ + R AK +IRV+AHTQ ++ L N+
Sbjct: 122 WKQSAQLAFTKRKQFARTKEGRLAEGRMFRAFAKKADIIRVVAHTQLRK--LRNNRVG-- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K+AH+ EIQ+NGG+V KI A+ LE+ I
Sbjct: 178 -----------------------------VKRAHVSEIQINGGTVQQKIELAKSLLEKEI 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF Q E D VTKG GF G
Sbjct: 209 RIDSVFQQSEACDVCAVTKGHGFTG 233
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 162/313 (51%), Gaps = 48/313 (15%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K+AH+ EIQ+NGG+V KI A+ LE+ I + VF Q E D VTKG GF GV RW
Sbjct: 179 KRAHVSEIQINGGTVQQKIELAKSLLEKEIRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 238
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR--------- 426
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT LNKKIY+
Sbjct: 239 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTHLNKKIYQKEVVEPVTI 298
Query: 427 MGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHR 486
+ A G V R+T G + + + A H S V+F R K +
Sbjct: 299 LEAPPMVVVGIVGY----------RQTPVGHKAIGTVWAHHTS-VEFR--RRFYKNWKQS 345
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+L K+K + + + L E + F + + D + RV
Sbjct: 346 AQLAFTKRKQFAR------TKEGRLAEGRM-----FRAFAK-KADII-----------RV 382
Query: 547 ITLRKMKLLKKRQ---KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
+ +++ L+ + K+AH+ EIQ+NGG+V KI A+ LE+ I + VF Q E D
Sbjct: 383 VAHTQLRKLRNNRVGVKRAHVSEIQINGGTVQQKIELAKSLLEKEIRIDSVFQQSEACDV 442
Query: 604 IGVTKGKGFKECV 616
VTKG GF V
Sbjct: 443 CAVTKGHGFTGVV 455
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 85/116 (73%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K+AH+ EIQ+NGG+V KI A+ LE+ I + VF Q E D VTKG GF GV RW
Sbjct: 399 KRAHVSEIQINGGTVQQKIELAKSLLEKEIRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 458
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT LNKKIY++G +
Sbjct: 459 GVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTHLNKKIYQIGRAV 514
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 87/121 (71%), Gaps = 8/121 (6%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT L KK
Sbjct: 450 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPARVMYTVARAGQHGYHHRTH--LNKKI 507
Query: 496 Y-----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y +SM N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RVITLR
Sbjct: 508 YQIGRAVSME-PNQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLR 566
Query: 551 K 551
+
Sbjct: 567 R 567
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 123/244 (50%), Gaps = 40/244 (16%)
Query: 62 HRG--KVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETP 119
HRG KV C P + ++ A G H KI +KE+VE VTILE P
Sbjct: 248 HRGLRKVACIGAWHPARVMYTVARAG-----QHGYHHRTHLNKKIYQKEVVEPVTILEAP 302
Query: 120 PMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLG 179
PMV+VG++GY +TP G ++ TVWA H S E RRRFYKNW +S Q AFTK + + K G
Sbjct: 303 PMVVVGIVGYRQTPVGHKAIGTVWAHHTSVEFRRRFYKNWKQSAQLAFTKRKQFARTKEG 362
Query: 180 KKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHV 239
+ + R AK +IRV+AHTQ ++ L N+
Sbjct: 363 RLAEGRMFRAFAKKADIIRVVAHTQLRK--LRNNRVG----------------------- 397
Query: 240 QMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 299
K+AH+ EIQ+NGG+V KI A+ LE+ I + VF Q E D VTKG
Sbjct: 398 --------VKRAHVSEIQINGGTVQQKIELAKSLLEKEIRIDSVFQQSEACDVCAVTKGH 449
Query: 300 GFKG 303
GF G
Sbjct: 450 GFTG 453
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + K+AH+ EIQ+NGG+V KI A+ LE+ I + VF Q E D VTK
Sbjct: 168 LRKLRNNRVGVKRAHVSEIQINGGTVQQKIELAKSLLEKEIRIDSVFQQSEACDVCAVTK 227
Query: 609 GKGFKECV 616
G GF V
Sbjct: 228 GHGFTGVV 235
>gi|193787392|dbj|BAG52598.1| unnamed protein product [Homo sapiens]
Length = 354
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/128 (81%), Positives = 122/128 (95%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK SAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKSSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKA 166
W+KS++KA
Sbjct: 122 WHKSKKKA 129
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 113/126 (89%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KGVT
Sbjct: 124 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT 183
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIH 432
SRWHTKKLPRKTH+GLRKVA IGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++G G
Sbjct: 184 SRWHTKKLPRKTHRGLRKVARIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 243
Query: 433 TKDGKV 438
KDGK+
Sbjct: 244 IKDGKL 249
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVA IGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 172 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVARIGAWHPARVAFSVARAGQKGYHHRTEI 231
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 232 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 291
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 292 KKRVLTLRKSLLVQTKRRALEKIDLKF 318
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 51/58 (87%)
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 124 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 181
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+K
Sbjct: 124 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 180
>gi|306922439|gb|ADN07433.1| RE73632p [Drosophila melanogaster]
Length = 208
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/135 (80%), Positives = 123/135 (91%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 68 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 127
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 128 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 187
Query: 428 GAGIHTKDGKVSVTS 442
GAGIHT+ + S T+
Sbjct: 188 GAGIHTRTARSSRTT 202
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 96/144 (66%), Gaps = 36/144 (25%)
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
YKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+Q
Sbjct: 23 YKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQ--------------- 67
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 68 ---------------------IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQ 106
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 107 VSNVFGQDEMIDCVGVTKGKGFKG 130
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 4/88 (4%)
Query: 527 EVNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HL
Sbjct: 45 SIENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHL 101
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
E+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 102 EKPIQVSNVFGQDEMIDCVGVTKGKGFK 129
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 51/61 (83%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 120 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 179
Query: 489 L 489
+
Sbjct: 180 I 180
>gi|378726960|gb|EHY53419.1| 60S ribosomal protein L3 [Exophiala dermatitidis NIH/UT8656]
Length = 346
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 150/220 (68%), Gaps = 37/220 (16%)
Query: 84 IGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW 143
+GYKAGMT IVR+ DRPG+K++KKEIVEAVT++ETPPM++VG++GY+ETP GLRS TVW
Sbjct: 1 MGYKAGMTTIVRDLDRPGAKMHKKEIVEAVTVIETPPMIVVGLVGYIETPRGLRSLTTVW 60
Query: 144 AEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
AEHL E +RRFYKNWY+S++KAFTK +KK+ + ++ ++L ++ KYC V+RV+AHT
Sbjct: 61 AEHLGDELKRRFYKNWYRSKKKAFTKYAKKYSEN-KSTSVTRELERIKKYCTVVRVLAHT 119
Query: 204 QNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSV 263
Q +Q L +QKKAHLMEIQ+NGGS+
Sbjct: 120 QIRQTPL------------------------------------KQKKAHLMEIQINGGSI 143
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
ADK+ + E+P+ + +F QDEMIDCI VTKG GF+G
Sbjct: 144 ADKVEFGHGLFEKPVEIDTIFEQDEMIDCIAVTKGHGFQG 183
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/123 (69%), Positives = 101/123 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGS+ADK+ + E+P+ + +F QDEMIDCI VTKG GF+GVTS
Sbjct: 127 KQKKAHLMEIQINGGSIADKVEFGHGLFEKPVEIDTIFEQDEMIDCIAVTKGHGFQGVTS 186
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 187 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKVYRIGKGNDE 246
Query: 434 KDG 436
K+
Sbjct: 247 KNA 249
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 86/112 (76%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 184 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKVYRIGKG 243
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NA+TD+D+ K ITPMGGF YGE+ NDF+++KG G KKRVITLRK
Sbjct: 244 NDEKNAATDFDIVNKQITPMGGFVRYGEIKNDFVLVKGSVPGVKKRVITLRK 295
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGS+ADK+ + E+P+ + +F QDEMIDCI
Sbjct: 114 RVLAHTQIRQTPLKQKKAHLMEIQINGGSIADKVEFGHGLFEKPVEIDTIFEQDEMIDCI 173
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 174 AVTKGHGFQ 182
>gi|402244317|emb|CBW52776.1| 40S ribosomal protein L3 [Polytomella sp. Pringsheim 198.80]
Length = 384
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 130/265 (49%), Positives = 170/265 (64%), Gaps = 40/265 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR R RGKVK FP+DD KP HLTAFIGYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRCGSLGFSPRKRCRRGRGKVKSFPRDDSAKPAHLTAFIGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+E P MV+VGV+GY++T GLRS VWA+HLS + +R+FYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIECPAMVVVGVVGYIKTTRGLRSLNAVWAQHLSDDLKRKFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++ AF +KK+ GKK I +L ++ K+C VIRV+AHTQ ++ LH
Sbjct: 122 WYKSKKAAFKNYAKKYD---GKK-IEAELAQLKKHCSVIRVLAHTQVRK--LHWG----- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKK L+EIQ+NGGS++DK+ + + E+ +
Sbjct: 171 -----------------------------QKKPQLIEIQVNGGSISDKVDFGYKLFEKEV 201
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF +E ID I +TKG G +G
Sbjct: 202 TVDAVFQTNEQIDTIAITKGHGVQG 226
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 90/114 (78%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKK L+EIQ+NGGS++DK+ + + E+ + V VF +E ID I +TKG G +GV R
Sbjct: 171 QKKPQLIEIQVNGGSISDKVDFGYKLFEKEVTVDAVFQTNEQIDTIAITKGHGVQGVVQR 230
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ+G+ HRTE+NKKIY++G
Sbjct: 231 WGVTRLPRKTHRGLRKVACIGAWHPARVKWTVARAGQQGFFHRTEMNKKIYKIG 284
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 100/151 (66%), Gaps = 9/151 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ+G+ HRTE+ KK
Sbjct: 223 GVQGVVQRWGVTRLPRKTHRGLRKVACIGAWHPARVKWTVARAGQQGFFHRTEM---NKK 279
Query: 496 YLSMVIKN----NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K+ +ASTD+D+T+K ITPMGGFPHYG V DFLMIKG G KKR ITLR+
Sbjct: 280 IYKIGKKDTASHSASTDFDVTKKDITPMGGFPHYGIVKEDFLMIKGAVPGTKKRPITLRQ 339
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
L + + L EI+L A K R
Sbjct: 340 T--LFPQTSRTALEEIKLKFIDTASKFGHGR 368
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ L QKK L+EIQ+NGGS++DK+ + + E+ + V VF +E ID I
Sbjct: 157 RVLAHTQVRKLHWGQKKPQLIEIQVNGGSISDKVDFGYKLFEKEVTVDAVFQTNEQIDTI 216
Query: 605 GVTKGKGFKECV 616
+TKG G + V
Sbjct: 217 AITKGHGVQGVV 228
>gi|188529359|gb|ACD62425.1| ribosomal protein L3 [Drosophila silvestris]
Length = 207
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 107/130 (82%), Positives = 120/130 (92%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
+L+K+RQKKAH+MEIQLNGGSV DK+ W R++LE+PI V VF QDEM+DC+GVTKGKGF
Sbjct: 1 RLIKQRQKKAHIMEIQLNGGSVEDKVKWVRENLEKPIQVCNVFGQDEMVDCVGVTKGKGF 60
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGVTSRWHTKKLPRKTHKGLRKV CIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+G
Sbjct: 61 KGVTSRWHTKKLPRKTHKGLRKVXCIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG 120
Query: 429 AGIHTKDGKV 438
AG+HTKDGKV
Sbjct: 121 AGVHTKDGKV 130
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 114/150 (76%), Gaps = 13/150 (8%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKV CIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 52 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVXCIGAWHPSRVSTTVARAGQKGYHHRTE 111
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 112 IN--KKIYRIGAGVHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 169
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+G KKR+ITLRK L + K++ L +I+L
Sbjct: 170 IGSKKRIITLRKS--LLRHTKRSALEQIKL 197
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 55/62 (88%)
Query: 242 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 301
+L+K+RQKKAH+MEIQLNGGSV DK+ W R++LE+PI V VF QDEM+DC+GVTKGKGF
Sbjct: 1 RLIKQRQKKAHIMEIQLNGGSVEDKVKWVRENLEKPIQVCNVFGQDEMVDCVGVTKGKGF 60
Query: 302 KG 303
KG
Sbjct: 61 KG 62
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 54/61 (88%)
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 612
+L+K+RQKKAH+MEIQLNGGSV DK+ W R++LE+PI V VF QDEM+DC+GVTKGKGF
Sbjct: 1 RLIKQRQKKAHIMEIQLNGGSVEDKVKWVRENLEKPIQVCNVFGQDEMVDCVGVTKGKGF 60
Query: 613 K 613
K
Sbjct: 61 K 61
>gi|24645875|ref|NP_731547.1| ribosomal protein L3, isoform D [Drosophila melanogaster]
gi|23170972|gb|AAF54612.2| ribosomal protein L3, isoform D [Drosophila melanogaster]
Length = 161
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/126 (82%), Positives = 114/126 (90%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQ 164
WY S
Sbjct: 122 WYVSED 127
>gi|225706934|gb|ACO09313.1| 60S ribosomal protein L3 [Osmerus mordax]
Length = 143
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 103/136 (75%), Positives = 120/136 (88%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSRRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPM++VGV+GYVETP GLRSFKT++AEH+S EC+RRFY+N
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMIVVGVVGYVETPRGLRSFKTIFAEHVSDECKRRFYRN 121
Query: 159 WYKSRQKAFTKASKKW 174
Q+A T + W
Sbjct: 122 CSSQAQRALTSSGLLW 137
>gi|22758910|gb|AAN05614.1| ribosomal protein L3 [Argopecten irradians]
Length = 254
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/130 (82%), Positives = 118/130 (90%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KLLKKRQKKAH+MEIQ+NGG+++ K+ WAR+ +E +PVG VFA DE ID IGVTKGKG
Sbjct: 22 KLLKKRQKKAHIMEIQVNGGTISQKVDWAREKMESSVPVGSVFAMDENIDIIGVTKGKGV 81
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYRMG
Sbjct: 82 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKIYRMG 141
Query: 429 AGIHTKDGKV 438
G HTKDGK+
Sbjct: 142 EGTHTKDGKL 151
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 111/142 (78%), Gaps = 15/142 (10%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+
Sbjct: 74 GVTKGKGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEI 133
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK M ++KNNASTD+D +EK+ITPMGGFPHYGEVNNDF+MIKGC
Sbjct: 134 ---NKKIYRMGEGTHTKDGKLVKNNASTDFDPSEKNITPMGGFPHYGEVNNDFVMIKGCT 190
Query: 540 MGPKKRVITLRKMKL--LKKRQ 559
MGPKKRV+TLRK L KK+Q
Sbjct: 191 MGPKKRVLTLRKSLLPSFKKKQ 212
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 237 SHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVT 296
+H Q KLLKKRQKKAH+MEIQ+NGG+++ K+ WAR+ +E +PVG VFA DE ID IGVT
Sbjct: 17 AHTQTKLLKKRQKKAHIMEIQVNGGTISQKVDWAREKMESSVPVGSVFAMDENIDIIGVT 76
Query: 297 KGKGFKG 303
KGKG KG
Sbjct: 77 KGKGVKG 83
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 553 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 612
KLLKKRQKKAH+MEIQ+NGG+++ K+ WAR+ +E +PVG VFA DE ID IGVTKGKG
Sbjct: 22 KLLKKRQKKAHIMEIQVNGGTISQKVDWAREKMESSVPVGSVFAMDENIDIIGVTKGKGV 81
Query: 613 K 613
K
Sbjct: 82 K 82
>gi|261195566|ref|XP_002624187.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis SLH14081]
gi|239588059|gb|EEQ70702.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis SLH14081]
gi|239610450|gb|EEQ87437.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis ER-3]
Length = 346
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 148/220 (67%), Gaps = 37/220 (16%)
Query: 84 IGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW 143
+GYKAGMT VR+ DRPG+K++KKEIVEAVTI+ETPPM+ VGV+GY+ETP GLRS TVW
Sbjct: 1 MGYKAGMTTTVRDLDRPGAKMHKKEIVEAVTIVETPPMIAVGVVGYIETPRGLRSLTTVW 60
Query: 144 AEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
AEHLS E +RRFYKNWYKS++KAFTK +K + G +I+++L ++ KYC V+RV+AHT
Sbjct: 61 AEHLSDEVKRRFYKNWYKSKKKAFTKYAKNHSENSGA-SISRELERIKKYCTVVRVLAHT 119
Query: 204 QNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSV 263
Q ++ L +QKKAHLME+Q+NGGSV
Sbjct: 120 QIRKTPL------------------------------------KQKKAHLMEVQVNGGSV 143
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
ADK+ +A E+PI + VF +DEMID I VTKG GF G
Sbjct: 144 ADKVDFAHGLFEKPIEIDSVFEKDEMIDVIAVTKGHGFNG 183
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVADK+ +A E+PI + VF +DEMID I VTKG GF GVTS
Sbjct: 127 KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDSVFEKDEMIDVIAVTKGHGFNGVTS 186
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G G
Sbjct: 187 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKIYRIGKG 243
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 184 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTS---CNHKIYRI 240
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++MIKG G KKRV+TLRK
Sbjct: 241 GKGSDEGNASTEFDVSKKQITPMGGFVRYGEVKNDYVMIKGSVPGVKKRVLTLRK 295
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLME+Q+NGGSVADK+ +A E+PI + VF +DEMID I
Sbjct: 114 RVLAHTQIRKTPLKQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDSVFEKDEMIDVI 173
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 174 AVTKGHGF 181
>gi|7417236|gb|AAF62506.1| ribosomal protein L3 [Trypanoplasma borreli]
Length = 416
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 159/265 (60%), Gaps = 33/265 (12%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDDP++ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRCRSFPKDDPSQKPHLTSFMVFKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPM IVGV GY ET G + TVWA H+SQE RRR+YKN
Sbjct: 62 RPGSKMNKKEVVEPVTILEAPPMAIVGVTGYRETAVGYKCIGTVWAHHVSQEFRRRYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + K GK + L+ + VIRVIAHTQ ++ H+
Sbjct: 122 WKQSAQLAFTKRKSFIRSKNGKVAEQRVLKALKDKATVIRVIAHTQLRKLRNHRVG---- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++ K+ A+ LE+ +
Sbjct: 178 -----------------------------NKKAHIQEIQVNGGTIEAKLKMAKDLLEKEV 208
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F Q E D VTKG GF+G
Sbjct: 209 RIDSIFQQSETCDVCAVTKGHGFEG 233
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 85/114 (74%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
KKAH+ EIQ+NGG++ K+ A+ LE+ + + +F Q E D VTKG GF+GV R
Sbjct: 178 NKKAHIQEIQVNGGTIEAKLKMAKDLLEKEVRIDSIFQQSETCDVCAVTKGHGFEGVVHR 237
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W LPRK+H+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT LNKKIYR+G
Sbjct: 238 WGVACLPRKSHRGLRKVACIGAWHPARVMYTVARAGQNGYHHRTHLNKKIYRIG 291
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 84/116 (72%), Gaps = 6/116 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
V RW LPRK+H+GLRKVACIGAWHP+RV +TVARAGQ GYHHRT L KK Y
Sbjct: 234 VVHRWGVACLPRKSHRGLRKVACIGAWHPARVMYTVARAGQNGYHHRTH--LNKKIYRIG 291
Query: 498 --SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
S V A+T YDLTEK ITPMGGF YG V NDF+M+KG GP++RV+TLR+
Sbjct: 292 RSSSVDPKQATTTYDLTEKVITPMGGFVGYGTVRNDFIMLKGSVAGPRRRVVTLRR 347
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++ K+ A+ LE+ + + +F Q E D VTK
Sbjct: 168 LRKLRNHRVGNKKAHIQEIQVNGGTIEAKLKMAKDLLEKEVRIDSIFQQSETCDVCAVTK 227
Query: 609 GKGFKECVH 617
G GF+ VH
Sbjct: 228 GHGFEGVVH 236
>gi|109100342|ref|XP_001106678.1| PREDICTED: 60S ribosomal protein L3-like isoform 1 [Macaca mulatta]
Length = 354
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/128 (78%), Positives = 118/128 (92%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KR +RH GKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRRSRHHGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+E PPMV+VG+ GYVETP GLR+FKTV+AEH+ EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVEMPPMVVVGIAGYVETPRGLRTFKTVFAEHMGDECKRRFYKN 121
Query: 159 WYKSRQKA 166
W+KS++KA
Sbjct: 122 WHKSKKKA 129
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/126 (76%), Positives = 111/126 (88%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +KKAHL EIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KGVT
Sbjct: 124 KSKKKAHLTEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT 183
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIH 432
S WHTKKLPRKTH+GLRKVACIGA HP+RV F+VARAGQKGYHHRTE+NKKIY++G G
Sbjct: 184 SHWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 243
Query: 433 TKDGKV 438
KDGK+
Sbjct: 244 IKDGKL 249
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 111/147 (75%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTS WHTKKLPRKTH+GLRKVACIGA HP+RV F+VARAGQKGYHHRTE
Sbjct: 172 GVTKGKGYKGVTSHWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEI 231
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 232 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 291
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KK+V+TLRK L++ +++ ++++
Sbjct: 292 KKQVLTLRKSLLVQTKRRALEKIDLKF 318
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
K +KKAHL EIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 124 KSKKKAHLTEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 181
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
K +KKAHL EIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+K
Sbjct: 124 KSKKKAHLTEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 180
>gi|123445156|ref|XP_001311341.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893146|gb|EAX98411.1| hypothetical protein TVAG_125550 [Trichomonas vaginalis G3]
Length = 415
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 180/282 (63%), Gaps = 23/282 (8%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF+APR GS+GF P+ RS RG+V+ +PKDD ++ HL AFIGYKAGMTH++R+
Sbjct: 2 SHRKFNAPRRGSLGFLPRGRSHAVRGRVRSWPKDDASQKPHLCAFIGYKAGMTHVLRDVV 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RP S+++KKE E VTILETPPM +VG+IGY T GL+ TVWA ++++E +R +YKN
Sbjct: 62 RPNSRLHKKEACEPVTILETPPMFVVGIIGYKPTVEGLKPVTTVWASYVNEEVKRNYYKN 121
Query: 159 WYKSR-QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WY+S+ +KAF+ S K +K Q L K+ K VIRVIAHTQ+ +
Sbjct: 122 WYQSKARKAFSCLS---NGKAAEKREKQ-LEKLQKEATVIRVIAHTQS----------AK 167
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
T + + +N + +H+ QKKAH++EIQ+NGG VA K+ +A+ LE+
Sbjct: 168 TTTRGVDANEQGAKKVLKGNHLG-------QKKAHMIEIQINGGDVAAKLNYAKSILEKE 220
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
I V VF + E ID IGV KG G++G +I K+ QKK H
Sbjct: 221 IKVADVFTEGEQIDTIGVGKGFGWEG-VIHRYGTKRLQKKTH 261
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 115/175 (65%), Gaps = 6/175 (3%)
Query: 258 LNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKR--- 314
L+ G A+K + L++ V +V A + T+G E A K+LK
Sbjct: 134 LSNGKAAEKREKQLEKLQKEATVIRVIAHTQSAKT--TTRGVD-ANEQGAKKVLKGNHLG 190
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH++EIQ+NGG VA K+ +A+ LE+ I V VF + E ID IGV KG G++GV R
Sbjct: 191 QKKAHMIEIQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIHR 250
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
+ TK+L +KTH+G RKVACIG W+P+RV ++VAR GQ+G HHRTE+NK+IYR+GA
Sbjct: 251 YGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGA 305
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL----FLCKKK 495
V R+ TK+L +KTH+G RKVACIG W+P+RV ++VAR GQ+G HHRTE+ +
Sbjct: 247 VIHRYGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGAA 306
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ I ST +DLT+KSI PMGGFPHYG V +DFLMIKG +G KR ITLRK +
Sbjct: 307 EVEGKINEGGSTSFDLTKKSINPMGGFPHYGLVKDDFLMIKGSVVGTVKRAITLRKTINI 366
Query: 556 KKRQKKAHLMEIQLNGGSVADKIAWAR 582
R+ EI L A K R
Sbjct: 367 NTRRIATE--EINLKWIDTASKFGHGR 391
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAH++EIQ+NGG VA K+ +A+ LE+ I V VF + E ID IGV KG G++ +H
Sbjct: 191 QKKAHMIEIQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIH 249
>gi|119580724|gb|EAW60320.1| ribosomal protein L3, isoform CRA_i [Homo sapiens]
gi|194387408|dbj|BAG60068.1| unnamed protein product [Homo sapiens]
Length = 122
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/121 (83%), Positives = 116/121 (95%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 W 159
W
Sbjct: 122 W 122
>gi|198285589|gb|ACH85333.1| ribosomal protein L3-like [Salmo salar]
Length = 251
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ IP+ VF QDEMID IGVTKG G
Sbjct: 16 MRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSIPITNVFTQDEMIDVIGVTKGHG 75
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 76 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPSRVAFSVARAGQKGYHHRTEINKKIYKI 135
Query: 428 GAGIHTKDGKV 438
G G HTKDGK+
Sbjct: 136 GQGYHTKDGKL 146
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 111/149 (74%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHPSRV F+VARAGQKGYHHRTE
Sbjct: 69 GVTKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPSRVAFSVARAGQKGYHHRTE- 127
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNA+T+YDL+ KSITP+GGF HYGEV NDF+M+KGC +
Sbjct: 128 -INKKIYKIGQGYHTKDGKLVKNNAATEYDLSNKSITPLGGFVHYGEVTNDFVMLKGCTI 186
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 187 GVKKRVLTLRKSLLVQSSRRATEKIDLKF 215
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 67/114 (58%), Gaps = 36/114 (31%)
Query: 190 MAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQK 249
M KYC+V+R+IAHTQ M+LL RQK
Sbjct: 1 MKKYCQVVRIIAHTQ------------------------------------MRLLPLRQK 24
Query: 250 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
K+HLME+QLNGGS++DK+ WAR+ LEQ IP+ VF QDEMID IGVTKG G+KG
Sbjct: 25 KSHLMEVQLNGGSISDKVDWARERLEQSIPITNVFTQDEMIDVIGVTKGHGYKG 78
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 56/69 (81%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R+I +M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ IP+ VF QDEMID I
Sbjct: 9 RIIAHTQMRLLPLRQKKSHLMEVQLNGGSISDKVDWARERLEQSIPITNVFTQDEMIDVI 68
Query: 605 GVTKGKGFK 613
GVTKG G+K
Sbjct: 69 GVTKGHGYK 77
>gi|123440132|ref|XP_001310830.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123470017|ref|XP_001318217.1| hypothetical protein [Trichomonas vaginalis G3]
gi|154419020|ref|XP_001582527.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121892616|gb|EAX97900.1| hypothetical protein TVAG_059650 [Trichomonas vaginalis G3]
gi|121900970|gb|EAY05994.1| hypothetical protein TVAG_124190 [Trichomonas vaginalis G3]
gi|121916763|gb|EAY21541.1| hypothetical protein TVAG_013060 [Trichomonas vaginalis G3]
Length = 415
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 180/282 (63%), Gaps = 23/282 (8%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF+APR GS+GF P+ RS RG+V+ +PKDD ++ HL AFIGYKAGMTH++R+
Sbjct: 2 SHRKFNAPRRGSLGFLPRGRSHAVRGRVRSWPKDDASQKPHLCAFIGYKAGMTHVLRDVV 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RP S+++KKE E VTILETPPM +VG+IGY T GL+ TVWA ++++E +R +YKN
Sbjct: 62 RPNSRLHKKEACEPVTILETPPMFVVGIIGYKPTVEGLKPVTTVWASYVNEEVKRNYYKN 121
Query: 159 WYKSR-QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WY+S+ +KAF+ S K +K Q L ++ K VIRVIAHTQ+ +
Sbjct: 122 WYQSKARKAFSCLS---NGKAAEKREKQ-LEELQKEATVIRVIAHTQS----------AK 167
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
T + + +N + +H+ QKKAH++EIQ+NGG VA K+ +A+ LE+
Sbjct: 168 TTTRGVDANEQGAKKVLKGNHLG-------QKKAHMIEIQINGGDVAAKLNYAKSILEKE 220
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
I V VF + E ID IGV KG G++G +I K+ QKK H
Sbjct: 221 IKVADVFTEGEQIDTIGVGKGFGWEG-VIHRYGTKRLQKKTH 261
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 115/175 (65%), Gaps = 6/175 (3%)
Query: 258 LNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKR--- 314
L+ G A+K + L++ V +V A + T+G E A K+LK
Sbjct: 134 LSNGKAAEKREKQLEELQKEATVIRVIAHTQSAKT--TTRGVD-ANEQGAKKVLKGNHLG 190
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH++EIQ+NGG VA K+ +A+ LE+ I V VF + E ID IGV KG G++GV R
Sbjct: 191 QKKAHMIEIQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIHR 250
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
+ TK+L +KTH+G RKVACIG W+P+RV ++VAR GQ+G HHRTE+NK+IYR+GA
Sbjct: 251 YGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGA 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL----FLCKKK 495
V R+ TK+L +KTH+G RKVACIG W+P+RV ++VAR GQ+G HHRTE+ +
Sbjct: 247 VIHRYGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGAA 306
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ I ST +DLT+KSI PMGGFPHYG V +DFLMIKG +G KR ITLRK +
Sbjct: 307 EVEGKINEGGSTSFDLTKKSINPMGGFPHYGLVKDDFLMIKGSVVGTVKRAITLRKTINI 366
Query: 556 KKRQKKAHLMEIQLNGGSVADKIAWAR 582
R+ EI L A K R
Sbjct: 367 NTRRIATE--EINLKWIDTASKFGHGR 391
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAH++EIQ+NGG VA K+ +A+ LE+ I V VF + E ID IGV KG G++ +H
Sbjct: 191 QKKAHMIEIQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIH 249
>gi|154422961|ref|XP_001584492.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121918739|gb|EAY23506.1| hypothetical protein TVAG_071700 [Trichomonas vaginalis G3]
Length = 415
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 180/282 (63%), Gaps = 23/282 (8%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF+APR GS+GF P+ RS RG+V+ +PKDD ++ HL AFIGYKAGMTH++R+
Sbjct: 2 SHRKFNAPRRGSLGFLPRGRSHAVRGRVRSWPKDDASQKPHLCAFIGYKAGMTHVLRDVV 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RP S+++KKE E VTILETPPM +VG+IGY T GL+ TVWA ++++E +R +YKN
Sbjct: 62 RPNSRLHKKEACEPVTILETPPMFVVGIIGYKPTIEGLKPVTTVWASYVNEEVKRNYYKN 121
Query: 159 WYKSR-QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WY+S+ +KAF+ S K +K Q L ++ K VIRVIAHTQ+ +
Sbjct: 122 WYQSKARKAFSCLS---NGKAAEKREKQ-LEELQKEATVIRVIAHTQS----------AK 167
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
T + + +N + +H+ QKKAH++EIQ+NGG VA K+ +A+ LE+
Sbjct: 168 TTTRGVDANEQGAKKVLKGNHLG-------QKKAHMIEIQINGGDVAAKLNYAKSILEKE 220
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
I V VF + E ID IGV KG G++G +I K+ QKK H
Sbjct: 221 IKVADVFTEGEQIDTIGVGKGFGWEG-VIHRYGTKRLQKKTH 261
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 115/175 (65%), Gaps = 6/175 (3%)
Query: 258 LNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKR--- 314
L+ G A+K + L++ V +V A + T+G E A K+LK
Sbjct: 134 LSNGKAAEKREKQLEELQKEATVIRVIAHTQSAKT--TTRGVD-ANEQGAKKVLKGNHLG 190
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH++EIQ+NGG VA K+ +A+ LE+ I V VF + E ID IGV KG G++GV R
Sbjct: 191 QKKAHMIEIQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIHR 250
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
+ TK+L +KTH+G RKVACIG W+P+RV ++VAR GQ+G HHRTE+NK+IYR+GA
Sbjct: 251 YGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGA 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL----FLCKKK 495
V R+ TK+L +KTH+G RKVACIG W+P+RV ++VAR GQ+G HHRTE+ +
Sbjct: 247 VIHRYGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGAA 306
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ I ST +DLT+KSI PMGGFPHYG V +DFLMIKG +G KR ITLRK +
Sbjct: 307 EVEGKINEGGSTSFDLTKKSINPMGGFPHYGLVKDDFLMIKGSVVGTVKRAITLRKTINI 366
Query: 556 KKRQKKAHLMEIQLNGGSVADKIAWAR 582
R+ EI L A K R
Sbjct: 367 NTRRIATE--EINLKWIDTASKFGHGR 391
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAH++EIQ+NGG VA K+ +A+ LE+ I V VF + E ID IGV KG G++ +H
Sbjct: 191 QKKAHMIEIQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIH 249
>gi|217069808|gb|ACJ83264.1| unknown [Medicago truncatula]
Length = 177
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/166 (68%), Positives = 138/166 (83%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ARHRGKVK FPKDDPTKP LTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE E VTI+ETPPMV+VGV+GYV+TP GLR+ TVW +HLS+E +RRFYKN
Sbjct: 62 KPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ 204
W KS++KAF+K SK+++ GKK I L K+ KY VIRV+AHTQ
Sbjct: 122 WCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQ 167
>gi|71416007|ref|XP_810050.1| ribosomal protein L13 [Trypanosoma cruzi strain CL Brener]
gi|70874525|gb|EAN88199.1| ribosomal protein L13, putative [Trypanosoma cruzi]
Length = 221
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 159/253 (62%), Gaps = 33/253 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+V+ FPKDDP++ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRVRSFPKDDPSQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP G ++ TVWA H S E RRRFYKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W +S Q AFTK + + G+ A+ L+ AK +IRV+AHTQ ++ L N+
Sbjct: 122 WKQSAQLAFTKRKQFARTTEGRLAEARTLKAFAKKADIIRVVAHTQLRK--LRNNRVG-- 177
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGG++A+KI A+ LE+ +
Sbjct: 178 -----------------------------VKKAHVSEIQINGGTIAEKIELAKSLLEKEV 208
Query: 279 PVGQVFAQDEMID 291
+ +F Q E D
Sbjct: 209 RIDSIFQQSETCD 221
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMID 602
LRK++ + KKAH+ EIQ+NGG++A+KI A+ LE+ + + +F Q E D
Sbjct: 168 LRKLRNNRVGVKKAHVSEIQINGGTIAEKIELAKSLLEKEVRIDSIFQQSETCD 221
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMID 358
KKAH+ EIQ+NGG++A+KI A+ LE+ + + +F Q E D
Sbjct: 179 KKAHVSEIQINGGTIAEKIELAKSLLEKEVRIDSIFQQSETCD 221
>gi|343459071|gb|AEM37694.1| ribosomal protein L3 [Epinephelus bruneus]
Length = 236
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ +PV VF QDEMID IG+TKG G
Sbjct: 1 MRLLPLRQKKSHLMEVQLNGGSISDKVDWAREKLEQAVPVNNVFTQDEMIDVIGITKGHG 60
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 61 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 120
Query: 428 GAGIHTKDGKV 438
G G HTKDGK+
Sbjct: 121 GQGYHTKDGKL 131
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 54 GITKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 112
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDL+ KSI P+GGF HYG+V NDF+M+KGC +
Sbjct: 113 -INKKIYKIGQGYHTKDGKLVKNNASTEYDLSNKSINPLGGFVHYGDVTNDFVMVKGCVV 171
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 172 GTKKRVLTLRKSLLVQTSRRALEKIDLKF 200
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ +PV VF QDEMID IG+TKG G
Sbjct: 1 MRLLPLRQKKSHLMEVQLNGGSISDKVDWAREKLEQAVPVNNVFTQDEMIDVIGITKGHG 60
Query: 301 FKG 303
+KG
Sbjct: 61 YKG 63
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ +PV VF QDEMID IG+TKG G
Sbjct: 1 MRLLPLRQKKSHLMEVQLNGGSISDKVDWAREKLEQAVPVNNVFTQDEMIDVIGITKGHG 60
Query: 612 FK 613
+K
Sbjct: 61 YK 62
>gi|334362360|gb|AEG78379.1| 60S ribosomal protein L3 [Epinephelus coioides]
Length = 261
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ +PV VF QDEMID IG+TKG G
Sbjct: 26 MRLLPLRQKKSHLMEVQLNGGSISDKVDWAREKLEQAVPVSNVFNQDEMIDVIGITKGHG 85
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 86 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 145
Query: 428 GAGIHTKDGKV 438
G G HTKDGK+
Sbjct: 146 GQGYHTKDGKL 156
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 110/149 (73%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 79 GITKGHGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTE- 137
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++KNNAST+YDL+ KSI P+GGF HYG+V NDF+M+KGC +
Sbjct: 138 -INKKIYKIGQGYHTKDGKLVKNNASTEYDLSNKSINPLGGFVHYGDVTNDFVMVKGCVV 196
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L++ ++ ++++
Sbjct: 197 GTKKRVLTLRKSLLVQTSRRALEKIDLKF 225
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 72/124 (58%), Gaps = 36/124 (29%)
Query: 180 KKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHV 239
+K + +D M KYC+VIRVIAHTQ
Sbjct: 1 EKQLEKDFASMKKYCQVIRVIAHTQ----------------------------------- 25
Query: 240 QMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 299
M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LEQ +PV VF QDEMID IG+TKG
Sbjct: 26 -MRLLPLRQKKSHLMEVQLNGGSISDKVDWAREKLEQAVPVSNVFNQDEMIDVIGITKGH 84
Query: 300 GFKG 303
G+KG
Sbjct: 85 GYKG 88
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKK+HLME+QLNGGS++DK+ WAR+ LE
Sbjct: 3 QLEKDFASMKKYCQVI--RVIAHTQMRLLPLRQKKSHLMEVQLNGGSISDKVDWAREKLE 60
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV VF QDEMID IG+TKG G+K
Sbjct: 61 QAVPVSNVFNQDEMIDVIGITKGHGYK 87
>gi|154282025|ref|XP_001541825.1| 60S ribosomal protein L3 [Ajellomyces capsulatus NAm1]
gi|150412004|gb|EDN07392.1| 60S ribosomal protein L3 [Ajellomyces capsulatus NAm1]
Length = 346
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 148/220 (67%), Gaps = 37/220 (16%)
Query: 84 IGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW 143
+GYKAGMT VR+ +RPG+K++KKEIVEAVTI+ETPPM+ VGV+GY+ETP GLRS TVW
Sbjct: 1 MGYKAGMTTTVRDLERPGAKMHKKEIVEAVTIVETPPMIAVGVVGYIETPRGLRSLTTVW 60
Query: 144 AEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
AEHLS E +RRFYKNWYKS++KAFTK +K + G ++A++L ++ KYC V+R++AHT
Sbjct: 61 AEHLSDEVKRRFYKNWYKSKKKAFTKYAKNHSENKGA-SVARELERIKKYCTVVRLLAHT 119
Query: 204 QNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSV 263
Q ++ L +QKKAHLME+Q+NGGSV
Sbjct: 120 QIRKTPL------------------------------------KQKKAHLMEVQVNGGSV 143
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
ADK+ +A E+PI + +F +DEMID I VTKG GF G
Sbjct: 144 ADKVDFAHGLFEKPIEIDTIFEKDEMIDVIAVTKGHGFNG 183
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLME+Q+NGGSVADK+ +A E+PI + +F +DEMID I VTKG GF GVTS
Sbjct: 127 KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDTIFEKDEMIDVIAVTKGHGFNGVTS 186
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N KIYR+G G
Sbjct: 187 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSCNHKIYRIGKG 243
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 184 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTS---CNHKIYRI 240
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NAST++D+++K ITPMGGF YGEV ND++MIKG G KKRV+TLRK
Sbjct: 241 GKGSDEGNASTEFDVSKKQITPMGGFVRYGEVKNDYVMIKGSVPGVKKRVLTLRK 295
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 612
+QKKAHLME+Q+NGGSVADK+ +A E+PI + +F +DEMID I VTKG GF
Sbjct: 127 KQKKAHLMEVQVNGGSVADKVDFAHGLFEKPIEIDTIFEKDEMIDVIAVTKGHGF 181
>gi|320542629|ref|NP_731550.2| ribosomal protein L3, isoform G [Drosophila melanogaster]
gi|318068758|gb|AAF54611.2| ribosomal protein L3, isoform G [Drosophila melanogaster]
Length = 138
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/120 (84%), Positives = 111/120 (92%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
>gi|414587237|tpg|DAA37808.1| TPA: hypothetical protein ZEAMMB73_880497, partial [Zea mays]
Length = 162
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/149 (68%), Positives = 126/149 (84%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FP+DDP KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDPKKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDL 187
W KS++KAFTK + K+++ GKK I L
Sbjct: 122 WCKSKKKAFTKYALKYENDAGKKEIQLQL 150
>gi|67472477|ref|XP_652042.1| 60S ribosomal protein L3 [Entamoeba histolytica HM-1:IMSS]
gi|67473369|ref|XP_652451.1| 60S ribosomal protein L3 [Entamoeba histolytica HM-1:IMSS]
gi|67475438|ref|XP_653413.1| 60S ribosomal protein L3 [Entamoeba histolytica HM-1:IMSS]
gi|167386238|ref|XP_001737679.1| 60S ribosomal protein L3 [Entamoeba dispar SAW760]
gi|167388407|ref|XP_001738553.1| 60S ribosomal protein L3 [Entamoeba dispar SAW760]
gi|56468865|gb|EAL46673.1| 60S ribosomal protein L3, putative [Entamoeba histolytica
HM-1:IMSS]
gi|56469305|gb|EAL47065.1| 60S ribosomal protein L3, putative [Entamoeba histolytica
HM-1:IMSS]
gi|56470361|gb|EAL48027.1| 60S ribosomal protein L3, putative [Entamoeba histolytica
HM-1:IMSS]
gi|165898153|gb|EDR25097.1| 60S ribosomal protein L3, putative [Entamoeba dispar SAW760]
gi|165899449|gb|EDR26038.1| 60S ribosomal protein L3, putative [Entamoeba dispar SAW760]
Length = 402
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 194/392 (49%), Gaps = 103/392 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F+P+KR + R V FPKD+ + HLT F+G+KAGMTH++RE
Sbjct: 2 SHRKFEAPRHGSLAFHPRKRVHKVRATVSAFPKDNAAEKPHLTGFLGFKAGMTHVIREVK 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R +K+ K ++E VTI+ETPPMV+ G +GY +T GL+ V+AEH++ E +RR+ K
Sbjct: 62 RTNTKLPKDGVLEPVTIIETPPMVVAGFVGYKKTTTGLKPITAVFAEHIADEFKRRYTKK 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYK+ + F ++K+ D K + +R + C V+RVIAHT
Sbjct: 122 WYKNTKNQFAVHTEKYNDVKAKSKRERQIRLIKNRCDVVRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM L+ +QKKA +MEIQ+NGGS+A+K+ +A LE+ I
Sbjct: 167 ---------------------QMALVPLKQKKAEVMEIQINGGSIAEKVDFAVSLLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
V VF DE ID VTKG G+ G ++K+ +
Sbjct: 206 SVNSVFGTDECIDVCSVTKGHGYNG------VIKR----------------------FGV 237
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+HL + G + C+G WH ++ +W
Sbjct: 238 RHLPRKTHRGL-----RKVACVGA------------WHPARV---------------SWT 265
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
+R AGQ G+ RTE+NKKIYR+G G
Sbjct: 266 VAR-------AGQMGFFKRTEVNKKIYRLGCG 290
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 86/117 (73%), Gaps = 3/117 (2%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V R+ + LPRKTH+GLRKVAC+GAWHP+RV +TVARAGQ G+ RTE + KK
Sbjct: 227 GYNGVIKRFGVRHLPRKTHRGLRKVACVGAWHPARVSWTVARAGQMGFFKRTE--VNKKI 284
Query: 496 Y-LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y L NA T++D+TEK ITPMGGFPHYG V NDFLMIKG G ++RVI+LRK
Sbjct: 285 YRLGCGDLKNAKTEFDITEKGITPMGGFPHYGVVKNDFLMIKGTVAGIRRRVISLRK 341
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M L+ +QKKA +MEIQ+NGGS+A+K+ +A LE+ I V VF DE ID
Sbjct: 161 RVIAHTQMALVPLKQKKAEVMEIQINGGSIAEKVDFAVSLLEKQISVNSVFGTDECIDVC 220
Query: 605 GVTKGKGFKECV 616
VTKG G+ +
Sbjct: 221 SVTKGHGYNGVI 232
>gi|123495590|ref|XP_001326781.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121909700|gb|EAY14558.1| hypothetical protein TVAG_388910 [Trichomonas vaginalis G3]
Length = 415
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 179/282 (63%), Gaps = 23/282 (8%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF+APR GS+GF P+ RS RG+V+ +PKDD ++ HL AFIGYKAGMTH++R+
Sbjct: 2 SHRKFNAPRRGSLGFLPRGRSHAVRGRVRSWPKDDASQKPHLCAFIGYKAGMTHVLRDVV 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RP S+++KKE E VTILETPPM +VG+IGY T GL+ TVWA ++++E +R +YKN
Sbjct: 62 RPNSRLHKKEACEPVTILETPPMFVVGIIGYKPTVEGLKPVTTVWASYVNEEVKRNYYKN 121
Query: 159 WYKSR-QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WY+S+ +KAF+ S K +K Q L ++ K VIRVIAHTQ+ +
Sbjct: 122 WYQSKARKAFSCLS---NGKAAEKREKQ-LEELQKEATVIRVIAHTQS----------AK 167
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
T + + +N + +H+ QKKAH++E Q+NGG VA K+ +A+ LE+
Sbjct: 168 TTTRGVDANEQGAKKVLKGNHLG-------QKKAHMIENQINGGDVAAKLNYAKSILEKE 220
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
I V VF + E ID IGV KG G++G +I K+ QKK H
Sbjct: 221 IKVADVFTEGEQIDTIGVGKGFGWEG-VIHRYGTKRLQKKTH 261
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 258 LNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKR--- 314
L+ G A+K + L++ V +V A + T+G E A K+LK
Sbjct: 134 LSNGKAAEKREKQLEELQKEATVIRVIAHTQSAKT--TTRGVD-ANEQGAKKVLKGNHLG 190
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH++E Q+NGG VA K+ +A+ LE+ I V VF + E ID IGV KG G++GV R
Sbjct: 191 QKKAHMIENQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIHR 250
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
+ TK+L +KTH+G RKVACIG W+P+RV ++VAR GQ+G HHRTE+NK+IYR+GA
Sbjct: 251 YGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGA 305
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL----FLCKKK 495
V R+ TK+L +KTH+G RKVACIG W+P+RV ++VAR GQ+G HHRTE+ +
Sbjct: 247 VIHRYGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGAA 306
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ I ST +DLT+KSI PMGGFPHYG V +DFLMIKG +G KR ITLRK +
Sbjct: 307 EVEGKINEGGSTSFDLTKKSINPMGGFPHYGLVKDDFLMIKGSVVGTVKRAITLRKTINI 366
Query: 556 KKRQKKAHLMEIQLNGGSVADKIAWAR 582
R+ EI L A K R
Sbjct: 367 NTRRIATE--EINLKWIDTASKFGHGR 391
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAH++E Q+NGG VA K+ +A+ LE+ I V VF + E ID IGV KG G++ +H
Sbjct: 191 QKKAHMIENQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIH 249
>gi|414587230|tpg|DAA37801.1| TPA: hypothetical protein ZEAMMB73_342493 [Zea mays]
gi|414866107|tpg|DAA44664.1| TPA: hypothetical protein ZEAMMB73_480377 [Zea mays]
Length = 352
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 158/265 (59%), Gaps = 72/265 (27%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGK
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGK--------------------------------- 28
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKN
Sbjct: 29 ----ELHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKN 84
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+++ GKK I L KM KY VIRVIAHTQ +
Sbjct: 85 WCKSKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHTQIR------------ 132
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 133 ---------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEV 169
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 170 PVDAVFQKDEMIDIIGVTKGKGYEG 194
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 106/130 (81%), Gaps = 3/130 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 134 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKG 191
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 192 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 251
Query: 428 G-AGIHTKDG 436
G AG T D
Sbjct: 252 GKAGQETHDA 261
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 185 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 243
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 244 -MNKKVYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRV 302
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 303 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 336
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTK
Sbjct: 131 IRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTK 188
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 189 GKGYEGVV 196
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 10 SHRKFSAPRHGSMGFYPKKRSARHRVKK 37
SHRKF PRHGS+GF P+KRS+RHR K+
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKE 29
>gi|429862403|gb|ELA37055.1| 60s ribosomal protein l3 [Colletotrichum gloeosporioides Nara gc5]
Length = 345
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 147/220 (66%), Gaps = 37/220 (16%)
Query: 84 IGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW 143
+GYKAGMT IVR+ DRPG+K NKKE+VEAV+I++TPP+++VG++GY+ETP GLRS TVW
Sbjct: 1 MGYKAGMTTIVRDLDRPGAKANKKEVVEAVSIIDTPPVIVVGIVGYIETPRGLRSLTTVW 60
Query: 144 AEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
AEHLS E RRRFYKNWYKS++KAFTK +K+ + G I +++ ++ KYC V+RV+AHT
Sbjct: 61 AEHLSDELRRRFYKNWYKSKKKAFTKYAKQHAESSG-ANITREIERIKKYCTVVRVLAHT 119
Query: 204 QNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSV 263
Q ++ L +QKKAHLMEIQ+NGGSV
Sbjct: 120 QIRKTPL------------------------------------KQKKAHLMEIQINGGSV 143
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+K+ + E+P+ V VF +DE+ID I VTKGKGF G
Sbjct: 144 PEKVDFGYGLFEKPVEVSSVFEKDEVIDVIAVTKGKGFNG 183
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSV +K+ + E+P+ V VF +DE+ID I VTKGKGF GVTS
Sbjct: 127 KQKKAHLMEIQINGGSVPEKVDFGYGLFEKPVEVSSVFEKDEVIDVIAVTKGKGFNGVTS 186
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 187 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKVYRIGKG 243
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 89/112 (79%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 184 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQDGYHHRTSVNHKVYRIGKG 243
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+NA+T+ D+T+K+ITP+GGF YGEV NDF+M+KG GPKKRV+TLRK
Sbjct: 244 DADDNAATELDVTKKTITPLGGFVRYGEVKNDFVMVKGSIPGPKKRVVTLRK 295
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSV +K+ + E+P+ V VF +DE+ID I
Sbjct: 114 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVPEKVDFGYGLFEKPVEVSSVFEKDEVIDVI 173
Query: 605 GVTKGKGF 612
VTKGKGF
Sbjct: 174 AVTKGKGF 181
>gi|71296875|gb|AAH36582.1| RPL3 protein [Homo sapiens]
gi|119580715|gb|EAW60311.1| ribosomal protein L3, isoform CRA_b [Homo sapiens]
gi|119580721|gb|EAW60317.1| ribosomal protein L3, isoform CRA_b [Homo sapiens]
Length = 251
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 16 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 75
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 76 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 135
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 136 GQGYLIKDGKL 146
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 69 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 128
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 129 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 188
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 189 KKRVLTLRKSLLVQTKRRALEKIDLKF 215
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 69/114 (60%), Gaps = 36/114 (31%)
Query: 190 MAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQK 249
M KYC+VIRVIAHTQ M+LL RQK
Sbjct: 1 MKKYCQVIRVIAHTQ------------------------------------MRLLPLRQK 24
Query: 250 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
KAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 25 KAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 78
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 58/69 (84%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID I
Sbjct: 9 RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI 68
Query: 605 GVTKGKGFK 613
GVTKGKG+K
Sbjct: 69 GVTKGKGYK 77
>gi|48257062|gb|AAH04323.2| RPL3 protein, partial [Homo sapiens]
Length = 292
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 57 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 116
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 117 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 176
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 177 GQGYLIKDGKL 187
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 110 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 169
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 170 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 229
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 230 KKRVLTLRKSLLVQTKRRALEKIDLKF 256
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 101/154 (65%), Gaps = 36/154 (23%)
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
EC+RRFYKNW+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 2 ECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ----- 56
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
M+LL RQKKAHLMEIQ+NGG+VA+K+ W
Sbjct: 57 -------------------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDW 85
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
AR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 86 ARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 119
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 34 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 91
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 92 QQVPVNQVFGQDEMIDVIGVTKGKGYK 118
>gi|379072552|gb|AFC92908.1| ribosomal protein L3, partial [Pipa carvalhoi]
Length = 255
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 119/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ + +G VF QDEMID IGVTKGKG
Sbjct: 42 MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVLIGGVFGQDEMIDVIGVTKGKG 101
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 102 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 161
Query: 428 GAGIHTKDGKV 438
G G H+KDGK+
Sbjct: 162 GQGYHSKDGKL 172
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 95 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 154
Query: 489 ---LFLCKKKYLS---MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + Y S ++KNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 155 NKKIYKIGQGYHSKDGKLVKNNASTDYDLSDKSINPLGGFVHYGEVKNDFVMLKGCVIGT 214
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ ++ ++++
Sbjct: 215 KKRVLTLRKSLLVQTSRRALEKIDLKF 241
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 86/141 (60%), Gaps = 37/141 (26%)
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
++KAFTK KK QD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 1 KKKAFTKYCKK-QDEEGKKQLEKDFASMKKYCQVIRVIAHTQ------------------ 41
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ + +G
Sbjct: 42 ------------------MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVLIGG 83
Query: 283 VFAQDEMIDCIGVTKGKGFKG 303
VF QDEMID IGVTKGKG+KG
Sbjct: 84 VFGQDEMIDVIGVTKGKGYKG 104
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 19 QLEKDFASMKKYCQVI--RVIAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLE 76
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + +G VF QDEMID IGVTKGKG+K
Sbjct: 77 QQVLIGGVFGQDEMIDVIGVTKGKGYK 103
>gi|384488486|gb|EIE80666.1| 60S ribosomal protein L3 [Rhizopus delemar RA 99-880]
Length = 341
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 151/220 (68%), Gaps = 38/220 (17%)
Query: 84 IGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW 143
+GYKAGMTHIVR+ +RPGSK++KKEIVEAVT++E P MV+VGV+GYVETP GLRS TVW
Sbjct: 1 MGYKAGMTHIVRDLERPGSKMHKKEIVEAVTVIEAPAMVVVGVVGYVETPRGLRSLTTVW 60
Query: 144 AEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
AEHLS+E +RRFYKNWY+S++KAFTK ++K+ + G K + ++L ++ KYC V+RVIAHT
Sbjct: 61 AEHLSEEAKRRFYKNWYRSKKKAFTKYAQKYAE--GAKDVTRELERIKKYCSVVRVIAHT 118
Query: 204 QNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSV 263
Q + LH Q+KAH+MEIQLNGGSV
Sbjct: 119 QISKAKLH------------------------------------QRKAHIMEIQLNGGSV 142
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
K+ WAR+H E+ + VG +F QDEMID I TKG GF+G
Sbjct: 143 EQKVDWAREHFEKEVTVGSIFEQDEMIDIIATTKGHGFEG 182
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
Q+KAH+MEIQLNGGSV K+ WAR+H E+ + VG +F QDEMID I TKG GF+GVT R
Sbjct: 127 QRKAHIMEIQLNGGSVEQKVDWAREHFEKEVTVGSIFEQDEMIDIIATTKGHGFEGVTHR 186
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHPSRV ++VARAGQ+GYH RTE+NKKIYR+ G K
Sbjct: 187 WGTKKLPRKTHRGLRKVACIGAWHPSRVMYSVARAGQRGYHRRTEINKKIYRIATGADAK 246
Query: 435 DG 436
G
Sbjct: 247 SG 248
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 91/112 (81%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHPSRV ++VARAGQ+GYH RTE+ + +
Sbjct: 183 VTHRWGTKKLPRKTHRGLRKVACIGAWHPSRVMYSVARAGQRGYHRRTEINKKIYRIATG 242
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ +T+YDLTEK ITPMGGFPHYGEVN DF+MIKGCC G KKRVITLRK
Sbjct: 243 ADAKSGTTEYDLTEKQITPMGGFPHYGEVNEDFVMIKGCCAGAKKRVITLRK 294
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+V + IK C RVI ++ K Q+KAH+MEIQLNGGSV K+ WAR+H E
Sbjct: 97 DVTRELERIKKYC--SVVRVIAHTQISKAKLHQRKAHIMEIQLNGGSVEQKVDWAREHFE 154
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
+ + VG +F QDEMID I TKG GF+ H
Sbjct: 155 KEVTVGSIFEQDEMIDIIATTKGHGFEGVTH 185
>gi|293335791|ref|NP_001168481.1| uncharacterized protein LOC100382258 [Zea mays]
gi|223948579|gb|ACN28373.1| unknown [Zea mays]
gi|413919530|gb|AFW59462.1| hypothetical protein ZEAMMB73_132937 [Zea mays]
Length = 253
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/275 (45%), Positives = 160/275 (58%), Gaps = 73/275 (26%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 36 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEE-VPVDAVFQKDEMIDIIGVTKGKG 92
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 93 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 152
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G +AGQ+ + T
Sbjct: 153 G------------------------------------------------KAGQESHDAST 164
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
E T+ D+T PMGGFPHYG + D+LMIKGCC+GPKKRV+
Sbjct: 165 EF---------------DRTEKDIT-----PMGGFPHYGIIKGDYLMIKGCCVGPKKRVV 204
Query: 548 TLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
TLR+ LLK+ + A L EI+L + K R
Sbjct: 205 TLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 237
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 36/114 (31%)
Query: 190 MAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQK 249
+ KY VIRVIAHTQ ++ MK LK QK
Sbjct: 18 LRKYASVIRVIAHTQIRK---------------------------------MKGLK--QK 42
Query: 250 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
KAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG++G
Sbjct: 43 KAHLMEIQVNGGTIADKVDYGYKFFEE-VPVDAVFQKDEMIDIIGVTKGKGYEG 95
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTK
Sbjct: 33 IRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEE-VPVDAVFQKDEMIDIIGVTK 89
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 90 GKGYEGVV 97
>gi|383132709|gb|AFG47248.1| Pinus taeda anonymous locus 2_207_02 genomic sequence
Length = 143
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/143 (68%), Positives = 124/143 (86%)
Query: 34 RVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHI 93
R ++ SHRKF PRHGS+GF P+KR+ RHRGKVK FP+DDP+KP LTAF+GYKAGMTHI
Sbjct: 1 RAEEMSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHI 60
Query: 94 VREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRR 153
VRE ++PGSK++KKE EAVT++ETPPMVIVGV+GY++TP GLR+ TVWA+HLS+E RR
Sbjct: 61 VREVEKPGSKLHKKETCEAVTVIETPPMVIVGVVGYIKTPRGLRTLNTVWAQHLSEEVRR 120
Query: 154 RFYKNWYKSRQKAFTKASKKWQD 176
RFYKNWY++++KAFTK +KK+
Sbjct: 121 RFYKNWYRAKKKAFTKYAKKYDS 143
>gi|414585655|tpg|DAA36226.1| TPA: hypothetical protein ZEAMMB73_366909 [Zea mays]
Length = 545
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/275 (45%), Positives = 160/275 (58%), Gaps = 73/275 (26%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 328 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEE-VPVDAVFQKDEMIDIIGVTKGKG 384
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 385 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 444
Query: 428 GAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G +AGQ+ + T
Sbjct: 445 G------------------------------------------------KAGQESHDAST 456
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
E T+ D+T PMGGFPHYG + D+LMIKGCC+GPKKRV+
Sbjct: 457 EF---------------DRTEKDIT-----PMGGFPHYGIIKGDYLMIKGCCVGPKKRVV 496
Query: 548 TLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
TLR+ LLK+ + A L EI+L + K R
Sbjct: 497 TLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 529
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 121/238 (50%), Gaps = 80/238 (33%)
Query: 66 VKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVG 125
VK FP+DDP KP HLTAF+GYKAGMTHIV V
Sbjct: 230 VKSFPRDDPKKPCHLTAFLGYKAGMTHIV-----------------------------VR 260
Query: 126 VIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQ 185
TP GLR+ +VWA+HLS+E RRRFYKNW KS++KAF+K + K+ GKK I
Sbjct: 261 SRSLAPTPRGLRTLNSVWAQHLSEEVRRRFYKNWCKSKKKAFSKYALKYDSDAGKKEIQL 320
Query: 186 DLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLK 245
L K+ K MK LK
Sbjct: 321 QLEKIRK------------------------------------------------MKGLK 332
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG++G
Sbjct: 333 --QKKAHLMEIQVNGGTIADKVDYGYKFFEE-VPVDAVFQKDEMIDIIGVTKGKGYEG 387
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTK
Sbjct: 325 IRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEE-VPVDAVFQKDEMIDIIGVTK 381
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 382 GKGYEGVV 389
>gi|361067623|gb|AEW08123.1| Pinus taeda anonymous locus 2_207_02 genomic sequence
gi|383132710|gb|AFG47249.1| Pinus taeda anonymous locus 2_207_02 genomic sequence
Length = 143
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/143 (68%), Positives = 124/143 (86%)
Query: 34 RVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHI 93
R ++ SHRKF PRHGS+GF P+KR+ RHRGKVK FP+DDP+KP LTAF+GYKAGMTHI
Sbjct: 1 RAEEMSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHI 60
Query: 94 VREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRR 153
VRE ++PGSK++KKE EAVT++ETPPMVIVGV+GY++TP GLR+ TVWA+HLS+E RR
Sbjct: 61 VREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVGYIKTPRGLRTLNTVWAQHLSEEVRR 120
Query: 154 RFYKNWYKSRQKAFTKASKKWQD 176
RFYKNWY++++KAFTK +KK+
Sbjct: 121 RFYKNWYRAKKKAFTKYAKKYDS 143
>gi|145497857|ref|XP_001434917.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402045|emb|CAK67520.1| unnamed protein product [Paramecium tetraurelia]
Length = 341
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 174/340 (51%), Gaps = 106/340 (31%)
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTHI+R +RPGSK+N KE+VEAVTI+ETPP+ +VG++GY+ETP GLR+ TVW+ +++
Sbjct: 1 MTHILRTVERPGSKLNGKEVVEAVTIVETPPLAVVGIVGYIETPRGLRALTTVWSTKIAK 60
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
+ RRFYKNW S++KAFT +K + K + L+++ KYC+V+RVI HT
Sbjct: 61 DTLRRFYKNWINSKKKAFTNYNKANAE---PKNLETQLKRIVKYCQVVRVIVHT------ 111
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
QM L RQKK H+ E+Q+NGG+ K+ +
Sbjct: 112 ------------------------------QMSKLNLRQKKNHVFEVQVNGGTTEQKVNY 141
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGS 329
A+ LE+ + V QVF Q+E ID +GVTKGKG G +I +K QKK H
Sbjct: 142 AKGLLEKEVKVDQVFKQNEQIDVLGVTKGKGVAG-VIKRFGVKHLQKKTHR--------- 191
Query: 330 VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLR 389
W R + CIG
Sbjct: 192 -----GWRR------------------VGCIG---------------------------- 200
Query: 390 KVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
WHP+ V+++VAR GQ GYHHRTE+NKKIYR+GA
Sbjct: 201 ------GWHPANVRYSVARTGQLGYHHRTEMNKKIYRIGA 234
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K L +KTH+G R+V CIG WHP+ V+++VAR GQ GYHHRTE+
Sbjct: 166 GVTKGKGVAGVIKRFGVKHLQKKTHRGWRRVGCIGGWHPANVRYSVARTGQLGYHHRTEM 225
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + KN AST+ DLT K+ITP+GGFPHYGE+ NDFLM+KG +GPKKRV+ L
Sbjct: 226 NKKIYRIGAAGDKNTASTEADLTSKAITPLGGFPHYGEIRNDFLMLKGGIVGPKKRVVLL 285
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK L+ + +KA L EI L + KI R
Sbjct: 286 RK-SLVPQTSRKA-LEEITLKFVDTSSKIGHGR 316
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M L RQKK H+ E+Q+NGG+ K+ +A+ LE+ + V QVF Q+E ID +
Sbjct: 106 RVIVHTQMSKLNLRQKKNHVFEVQVNGGTTEQKVNYAKGLLEKEVKVDQVFKQNEQIDVL 165
Query: 605 GVTKGKG 611
GVTKGKG
Sbjct: 166 GVTKGKG 172
>gi|414587234|tpg|DAA37805.1| TPA: hypothetical protein ZEAMMB73_880497 [Zea mays]
gi|414588490|tpg|DAA39061.1| TPA: hypothetical protein ZEAMMB73_842297 [Zea mays]
gi|414866106|tpg|DAA44663.1| TPA: hypothetical protein ZEAMMB73_480377 [Zea mays]
Length = 337
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 146/214 (68%), Gaps = 35/214 (16%)
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTHIVRE ++PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+
Sbjct: 1 MTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSE 60
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
E RRRFYKNW KS++KAFTK + K+++ GKK I L KM KY VIRVIAHTQ +
Sbjct: 61 EVRRRFYKNWCKSKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHTQIR--- 117
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
+MK LK QKKAHLMEIQ+NGG++ADK+ +
Sbjct: 118 ------------------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDY 145
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ E+ +PV VF +DEMID IGVTKGKG++G
Sbjct: 146 GYKFFEKEVPVDAVFQKDEMIDIIGVTKGKGYEG 179
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 103/124 (83%), Gaps = 1/124 (0%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG++GV +
Sbjct: 123 KQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKGYEGVVT 182
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-AGIH 432
RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G AG
Sbjct: 183 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKAGQE 242
Query: 433 TKDG 436
T D
Sbjct: 243 THDA 246
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 170 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 228
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 229 -MNKKVYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRV 287
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 288 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 321
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTK
Sbjct: 116 IRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTK 173
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 174 GKGYEGVV 181
>gi|82408380|gb|ABB73034.1| ribosomal protein L3 [Mytilus edulis]
Length = 160
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 114/191 (59%), Positives = 142/191 (74%), Gaps = 36/191 (18%)
Query: 80 LTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSF 139
LTAFIGYKAGM+HIVRE DRPGSK +KKEIVEAVTILE PPM++VGV+GY+ETP GLR+F
Sbjct: 6 LTAFIGYKAGMSHIVREVDRPGSKSHKKEIVEAVTILEAPPMMVVGVVGYIETPSGLRAF 65
Query: 140 KTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRV 199
KT++AEHLS+EC+RRFYKNWY+S++KAF+K++KKWQD+ GKK I +D KM KYC+VIRV
Sbjct: 66 KTIFAEHLSEECKRRFYKNWYRSKKKAFSKSAKKWQDEAGKKEIERDFNKMKKYCRVIRV 125
Query: 200 IAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLN 259
+AHTQ KL+KKRQKKAH+MEIQ+N
Sbjct: 126 LAHTQT------------------------------------KLMKKRQKKAHIMEIQVN 149
Query: 260 GGSVADKIAWA 270
GG+++ K+ WA
Sbjct: 150 GGTISQKVDWA 160
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWA 581
E+ DF +K C RV+ + KL+KKRQKKAH+MEIQ+NGG+++ K+ WA
Sbjct: 108 EIERDFNKMKKYCRVI--RVLAHTQTKLMKKRQKKAHIMEIQVNGGTISQKVDWA 160
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWA 337
KL+KKRQKKAH+MEIQ+NGG+++ K+ WA
Sbjct: 132 KLMKKRQKKAHIMEIQVNGGTISQKVDWA 160
>gi|344248331|gb|EGW04435.1| 60S ribosomal protein L3-like [Cricetulus griseus]
Length = 363
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 149/214 (69%), Gaps = 36/214 (16%)
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTH +RE RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS
Sbjct: 1 MTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSD 60
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
ECRRRFY++W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 61 ECRRRFYRDWHKSKKKAFTKACKRWRDPSGKKQLQKDFAAMKKYCKVIRVIVHT------ 114
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
QMKLL RQKKAH+MEIQLNGG+VA+K+AW
Sbjct: 115 ------------------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAW 144
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
A+ LE+ +PV VF+Q E+ID I VTKG+G KG
Sbjct: 145 AQAQLEKQVPVHSVFSQSEVIDVIAVTKGRGVKG 178
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 116 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAQLEKQVPVHSVFSQSEVIDVIAVTKGRG 175
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 176 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 235
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 236 GRGLHMEDGKM 246
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 175 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 232
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 233 YRIGRGLHMEDGKMVKNNASTSYDMTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRV 292
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 293 ITLRKSLLVHHSRRALENIELKF 315
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 93 QLQKDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAQLE 150
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 151 KQVPVHSVFSQSEVIDVIAVTKGRGVK 177
>gi|379072556|gb|AFC92910.1| ribosomal protein L3, partial [Hymenochirus curtipes]
Length = 256
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG++A+K+ WAR+ LEQ + + VF QDEMID IGVTKGKG
Sbjct: 43 MRLLPLRQKKSHLMEIQVNGGTIAEKVDWAREKLEQQVAIAGVFGQDEMIDVIGVTKGKG 102
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 103 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 162
Query: 428 GAGIHTKDGKV 438
G G H+KDGK+
Sbjct: 163 GQGYHSKDGKL 173
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 123/180 (68%), Gaps = 15/180 (8%)
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKG 456
W +++ VA AG G ++ G+ G VTSRWHTKKLPRKTH+G
Sbjct: 71 WAREKLEQQVAIAGVFGQDEMIDV--------IGVTKGKGYKGVTSRWHTKKLPRKTHRG 122
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTE----LFLCKKKYLS---MVIKNNASTDY 509
LRKVACIGAWHP+RV F+VARAGQKGYHHRTE ++ + Y S ++KNNASTDY
Sbjct: 123 LRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYHSKDGKLVKNNASTDY 182
Query: 510 DLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
DL++KSI P+GGF HYGEV NDF+M+KGC +G KKRV+TLRK L++ ++ ++++
Sbjct: 183 DLSDKSINPLGGFVHYGEVKNDFVMLKGCVIGTKKRVLTLRKSLLVQTSRRALEKIDLKF 242
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 87/141 (61%), Gaps = 36/141 (25%)
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
++KAFTK KKWQD+ GKK + +D+ M KYC+VIRVIAHTQ
Sbjct: 1 KKKAFTKYCKKWQDEEGKKQLEKDIASMKKYCQVIRVIAHTQ------------------ 42
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
M+LL RQKK+HLMEIQ+NGG++A+K+ WAR+ LEQ + +
Sbjct: 43 ------------------MRLLPLRQKKSHLMEIQVNGGTIAEKVDWAREKLEQQVAIAG 84
Query: 283 VFAQDEMIDCIGVTKGKGFKG 303
VF QDEMID IGVTKGKG+KG
Sbjct: 85 VFGQDEMIDVIGVTKGKGYKG 105
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M+LL RQKK+HLMEIQ+NGG++A+K+ WAR+ LEQ + + VF QDEMID I
Sbjct: 36 RVIAHTQMRLLPLRQKKSHLMEIQVNGGTIAEKVDWAREKLEQQVAIAGVFGQDEMIDVI 95
Query: 605 GVTKGKGFK 613
GVTKGKG+K
Sbjct: 96 GVTKGKGYK 104
>gi|162605876|ref|XP_001713453.1| 60S ribosomal protein L3 [Guillardia theta]
gi|13794385|gb|AAK39762.1|AF083031_119 60S ribosomal protein L3 [Guillardia theta]
Length = 375
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/265 (41%), Positives = 162/265 (61%), Gaps = 43/265 (16%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
+HRKF APRHGS+ F PKKR R GK+K FPKDD + HLT IGYK+GMTH+ R D
Sbjct: 2 AHRKFEAPRHGSLQFLPKKRCRRTVGKIKSFPKDDICQSCHLTGSIGYKSGMTHVERLVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
P SK+NK+E+++AVTILETPP++IVG +GY++TP G+RS TVW + + + +R +YKN
Sbjct: 62 LPNSKMNKREVIDAVTILETPPILIVGFVGYIKTPKGIRSLNTVWIDEVDESIKRNYYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++K+FT +K K K+T KYC ++R I +
Sbjct: 122 WYKSKKKSFTHYNKIVNLKKFKET-------YFKYCSILRCIISS--------------- 159
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
++K + +++K+ ++EIQLNGG K+ + + L + I
Sbjct: 160 ---------------------EIKKIGFKKRKSKILEIQLNGGKPEHKLDYIEKILGKKI 198
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ Q+F+++E++D IG++KGKGF+G
Sbjct: 199 TIDQIFSENELVDIIGISKGKGFQG 223
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 96/126 (76%), Gaps = 5/126 (3%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+++K+ ++EIQLNGG K+ + + L + I + Q+F+++E++D IG++KGKGF+GV S
Sbjct: 167 KKRKSKILEIQLNGGKPEHKLDYIEKILGKKITIDQIFSENELVDIIGISKGKGFQGVVS 226
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW KLPRKTH+G RKVAC+G+WHPSRV FTVARAGQ GYHHRT LN KIY +G
Sbjct: 227 RWGVTKLPRKTHRGARKVACVGSWHPSRVSFTVARAGQSGYHHRTSLNIKIYAIG----- 281
Query: 434 KDGKVS 439
KDG +S
Sbjct: 282 KDGFIS 287
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 83/127 (65%), Gaps = 10/127 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G V SRW KLPRKTH+G RKVAC+G+WHPSRV FTVARAGQ GYHHRT L
Sbjct: 214 GISKGKGFQGVVSRWGVTKLPRKTHRGARKVACVGSWHPSRVSFTVARAGQSGYHHRTSL 273
Query: 490 -----FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
+ K ++S I N +++ SI PMGGFP YG V +DFL++KG +G KK
Sbjct: 274 NIKIYAIGKDGFISNHILTNNKSNF-----SINPMGGFPFYGLVKSDFLILKGGIVGSKK 328
Query: 545 RVITLRK 551
R + LRK
Sbjct: 329 RGLILRK 335
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 522 FPHYGEVNN----DFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADK 577
F HY ++ N K C + R I ++K + +++K+ ++EIQLNGG K
Sbjct: 130 FTHYNKIVNLKKFKETYFKYCSI---LRCIISSEIKKIGFKKRKSKILEIQLNGGKPEHK 186
Query: 578 IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+ + + L + I + Q+F+++E++D IG++KGKGF+ V
Sbjct: 187 LDYIEKILGKKITIDQIFSENELVDIIGISKGKGFQGVV 225
>gi|379072554|gb|AFC92909.1| ribosomal protein L3, partial [Rhinophrynus dorsalis]
Length = 256
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ + V VF QDEMID IGVTKGKG
Sbjct: 43 MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVAVSGVFGQDEMIDVIGVTKGKG 102
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 103 NKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 162
Query: 428 GAGIHTKDGKV 438
G G H+KDGK+
Sbjct: 163 GQGYHSKDGKL 173
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 96 GVTKGKGNKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 155
Query: 489 ---LFLCKKKYLS---MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + Y S ++KNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 156 NKKIYKIGQGYHSKDGKLVKNNASTDYDLSDKSINPLGGFVHYGEVKNDFIMLKGCVIGT 215
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ ++ ++++
Sbjct: 216 KKRVLTLRKSLLVQTSRRALEKIDLKF 242
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 84/141 (59%), Gaps = 36/141 (25%)
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
++KAFTK KKWQD GKK + +D M KYC+VIRVIAHTQ
Sbjct: 1 KKKAFTKYCKKWQDDEGKKQLEKDFASMKKYCQVIRVIAHTQ------------------ 42
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LEQ + V
Sbjct: 43 ------------------MRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVAVSG 84
Query: 283 VFAQDEMIDCIGVTKGKGFKG 303
VF QDEMID IGVTKGKG KG
Sbjct: 85 VFGQDEMIDVIGVTKGKGNKG 105
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKK+HLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 20 QLEKDFASMKKYCQVI--RVIAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLE 77
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q + V VF QDEMID IGVTKGKG K
Sbjct: 78 QQVAVSGVFGQDEMIDVIGVTKGKGNK 104
>gi|440292698|gb|ELP85882.1| 60S ribosomal protein L3, putative [Entamoeba invadens IP1]
Length = 402
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 152/265 (57%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F+P+KR R R FPKD T HLT F+G+KAGMTH++RE
Sbjct: 2 SHRKFEAPRHGSLAFHPRKRVHRLRAATSAFPKDKTTDKPHLTGFLGFKAGMTHVIREVK 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R +K+ K I+E VTI+ETPPMV VG +GY +T GLR V+AEH+S E +RR+ KN
Sbjct: 62 RTNTKLPKDGILEPVTIIETPPMVCVGFVGYRKTVKGLRQMSVVFAEHISDEFKRRYSKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS ++ F ++ + D K + ++ M IR+IAHT
Sbjct: 122 WKKSNRRQFAVHTETYNDVKVKAKRERIIKMMKNNADFIRIIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM L+ +QKKA +MEIQ+NGGS+ADKI +A LE+ I
Sbjct: 167 ---------------------QMALVPLKQKKAEVMEIQVNGGSIADKIDFATGLLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V +F +DE ID + VTKG GF G
Sbjct: 206 SVDSIFGKDEPIDIVAVTKGHGFNG 230
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 96/123 (78%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M L+ +QKKA +MEIQ+NGGS+ADKI +A LE+ I V +F +DE ID + VTKG G
Sbjct: 168 MALVPLKQKKAEVMEIQVNGGSIADKIDFATGLLEKQISVDSIFGKDEPIDIVAVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F GV R+ + LPRKTH+GLRKVAC+GAWHP+RV +TVARAGQ G+ RTE+NKKIYR+
Sbjct: 228 FNGVIKRFGVRHLPRKTHRGLRKVACVGAWHPARVGWTVARAGQMGFFKRTEVNKKIYRI 287
Query: 428 GAG 430
GAG
Sbjct: 288 GAG 290
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 86/113 (76%), Gaps = 3/113 (2%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY-LS 498
V R+ + LPRKTH+GLRKVAC+GAWHP+RV +TVARAGQ G+ RTE+ KK Y +
Sbjct: 231 VIKRFGVRHLPRKTHRGLRKVACVGAWHPARVGWTVARAGQMGFFKRTEV--NKKIYRIG 288
Query: 499 MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
NA+T++D TEK ITPMGGFPHYG V NDFLMIKG C G +KRVITLRK
Sbjct: 289 AGALRNANTEFDFTEKDITPMGGFPHYGIVKNDFLMIKGTCAGIRKRVITLRK 341
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R+I +M L+ +QKKA +MEIQ+NGGS+ADKI +A LE+ I V +F +DE ID +
Sbjct: 161 RIIAHTQMALVPLKQKKAEVMEIQVNGGSIADKIDFATGLLEKQISVDSIFGKDEPIDIV 220
Query: 605 GVTKGKGFKECV 616
VTKG GF +
Sbjct: 221 AVTKGHGFNGVI 232
>gi|399949966|gb|AFP65622.1| 60S ribosomal protein L3 [Chroomonas mesostigmatica CCMP1168]
Length = 388
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 205/393 (52%), Gaps = 106/393 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ +PRHGS+GF PKKR R +GK+K FPKD HLTA +GYKAGMTH+VR D
Sbjct: 2 SHRKYESPRHGSLGFLPKKRCQRKKGKIKSFPKDSENSICHLTAALGYKAGMTHVVRTVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHL-SQECRRRFYK 157
+ GSK++ K+ VEAVTILETPP+ I+G IGY++TP GLR+F+T+W+ + +E RR FYK
Sbjct: 62 KLGSKLHGKDCVEAVTILETPPLEIIGYIGYIKTPRGLRAFRTIWSNSIFPEEFRRNFYK 121
Query: 158 NWYKSRQKAFTKAS--KKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQ 215
NWYKS++KAF+K + KK + + + ++ K+C VIR I+ ++ + L
Sbjct: 122 NWYKSKKKAFSKKTNLKKMEFNFIEIENQKKKFQIKKFCSVIRCISFSKISKTGL----- 176
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
+QKKA ++EIQ+NGG+ +K+ + +
Sbjct: 177 -------------------------------KQKKAKILEIQVNGGNSMEKVDFIEKMFN 205
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIA 335
+ I + +F Q E+ID +G+TKGKGF+G +I+ + K +K H A K+A
Sbjct: 206 KEISISDIFKQREIIDVVGITKGKGFEG-VISRWGVTKLPRKTH---------RGARKVA 255
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIG 395
C+G WH ++
Sbjct: 256 -----------------------CVG------------SWHPSRI--------------- 265
Query: 396 AWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
F V RAGQ GYHHRT+ N +IY++G
Sbjct: 266 -------SFRVPRAGQNGYHHRTQNNIQIYKVG 291
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 86/123 (69%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
GI G V SRW KLPRKTH+G RKVAC+G+WHPSR+ F V RAGQ GYHHRT+
Sbjct: 223 VGITKGKGFEGVISRWGVTKLPRKTHRGARKVACVGSWHPSRISFRVPRAGQNGYHHRTQ 282
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
+ K NASTD+DLTEK ITPMGGFP+YG + DFL++KGC +G +KR IT
Sbjct: 283 NNIQIYKVGKASDPRNASTDFDLTEKKITPMGGFPYYGIIKEDFLILKGCILGSRKRPIT 342
Query: 549 LRK 551
LRK
Sbjct: 343 LRK 345
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R I+ K+ +QKKA ++EIQ+NGG+ +K+ + + + I + +F Q E+ID +
Sbjct: 164 RCISFSKISKTGLKQKKAKILEIQVNGGNSMEKVDFIEKMFNKEISISDIFKQREIIDVV 223
Query: 605 GVTKGKGFKECV 616
G+TKGKGF+ +
Sbjct: 224 GITKGKGFEGVI 235
>gi|167535326|ref|XP_001749337.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772203|gb|EDQ85858.1| predicted protein [Monosiga brevicollis MX1]
Length = 419
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/265 (49%), Positives = 167/265 (63%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG +GF PKKR HRG+++ FPK+ HLTAF+GYKAGMTHIVR+ D
Sbjct: 21 SHRKFRAPRHGHLGFLPKKRCKHHRGQIRSFPKEQKGDKPHLTAFLGYKAGMTHIVRDLD 80
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GS +KKE+VEAVT++ETPP+V+VGV+GY TP GLR TVWA H+++ RR YK+
Sbjct: 81 RTGSLAHKKEVVEAVTVVETPPIVVVGVVGYTSTPRGLRQLTTVWATHMAEGFIRRCYKH 140
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+ S++ AF K K G++ DL +M KYC VIRVI HT
Sbjct: 141 FAASKKAAFRKYFSKRNTPEGQQQFDDDLARMVKYCSVIRVIVHT--------------- 185
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK L QKKAH+MEIQ+NGGS+ +K+ +A+ LE+ +
Sbjct: 186 ---------------------QMKKLNLGQKKAHVMEIQINGGSIQEKVDFAKSLLEKEV 224
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF+Q+E ID IGVTKG GF+G
Sbjct: 225 PIKDVFSQNEHIDIIGVTKGHGFEG 249
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/131 (68%), Positives = 109/131 (83%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK L QKKAH+MEIQ+NGGS+ +K+ +A+ LE+ +P+ VF+Q+E ID IGVTKG G
Sbjct: 187 MKKLNLGQKKAHVMEIQINGGSIQEKVDFAKSLLEKEVPIKDVFSQNEHIDIIGVTKGHG 246
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F+GVT RW TKKLPRKTHKGLRKVACIGAWHP+ V + V RAGQ+GYHHRTE+NKKIYR+
Sbjct: 247 FEGVTHRWGTKKLPRKTHKGLRKVACIGAWHPANVTYAVPRAGQRGYHHRTEMNKKIYRI 306
Query: 428 GAGIHTKDGKV 438
GAG H KDGK+
Sbjct: 307 GAGYHEKDGKL 317
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 91/134 (67%), Gaps = 11/134 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT RW TKKLPRKTHKGLRKVACIGAWHP+ V + V RAGQ+GYHHRTE
Sbjct: 240 GVTKGHGFEGVTHRWGTKKLPRKTHKGLRKVACIGAWHPANVTYAVPRAGQRGYHHRTE- 298
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++ NA + D TEKSI PMGGFPHYG V DFL+IKGC +
Sbjct: 299 -MNKKIYRIGAGYHEKDGKLVTANAVCEADPTEKSINPMGGFPHYGLVKEDFLIIKGCTV 357
Query: 541 GPKKRVITLRKMKL 554
G KKRV+TLRK L
Sbjct: 358 GTKKRVLTLRKSIL 371
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 4/92 (4%)
Query: 527 EVNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 585
+ ++D M+K C + RVI +MK L QKKAH+MEIQ+NGGS+ +K+ +A+ L
Sbjct: 164 QFDDDLARMVKYCSV---IRVIVHTQMKKLNLGQKKAHVMEIQINGGSIQEKVDFAKSLL 220
Query: 586 EQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
E+ +P+ VF+Q+E ID IGVTKG GF+ H
Sbjct: 221 EKEVPIKDVFSQNEHIDIIGVTKGHGFEGVTH 252
>gi|284073152|gb|ADB77815.1| 60S ribosomal protein L3 [Bryopsis sp. EE4]
Length = 217
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 150/243 (61%), Gaps = 36/243 (14%)
Query: 61 RHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPP 120
R +GK+K FPKDD ++P HLT F+GYKAG THIVRE DRP SK++KKE E VTI+E PP
Sbjct: 1 RGKGKIKSFPKDDASQPPHLTGFMGYKAGSTHIVREVDRPNSKLHKKETCETVTIVECPP 60
Query: 121 MVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGK 180
M++V IGYV T +G S TVWA+HL+ E +RRFYK W+ S+++AF +KK+QD G
Sbjct: 61 MIVVAAIGYVSTANGPVSKYTVWAQHLTDEMKRRFYKRWHTSQRRAFCNYAKKYQD--GS 118
Query: 181 KTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQ 240
I LRKM C IR++AHTQ ++KT
Sbjct: 119 TEIEDTLRKMKDECVSIRILAHTQ----------------------ISKTP--------- 147
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
LK+ QKK H MEIQ+NGG+V DK+ +A + E+ + V VF +EMID I VTKG G
Sbjct: 148 ---LKRFQKKGHCMEIQVNGGTVPDKVDFAYKLFEKGVSVDSVFQPNEMIDTIAVTKGCG 204
Query: 301 FKG 303
+G
Sbjct: 205 TEG 207
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 50/75 (66%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 365
I+ LK+ QKK H MEIQ+NGG+V DK+ +A + E+ + V VF +EMID I VTKG
Sbjct: 143 ISKTPLKRFQKKGHCMEIQVNGGTVPDKVDFAYKLFEKGVSVDSVFQPNEMIDTIAVTKG 202
Query: 366 KGFKGVTSRWHTKKL 380
G +GV +RW +L
Sbjct: 203 CGTEGVVTRWGVTRL 217
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
LK+ QKK H MEIQ+NGG+V DK+ +A + E+ + V VF +EMID I VTKG G
Sbjct: 148 LKRFQKKGHCMEIQVNGGTVPDKVDFAYKLFEKGVSVDSVFQPNEMIDTIAVTKGCG 204
>gi|164659874|ref|XP_001731061.1| hypothetical protein MGL_2060 [Malassezia globosa CBS 7966]
gi|159104959|gb|EDP43847.1| hypothetical protein MGL_2060 [Malassezia globosa CBS 7966]
Length = 345
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 153/220 (69%), Gaps = 37/220 (16%)
Query: 84 IGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW 143
+GYKAGMTHIVR+ DRPGSK +K+EIVEA T++ETPPMV+VG++GYVETP GLRS TVW
Sbjct: 1 MGYKAGMTHIVRDLDRPGSKYHKREIVEATTVIETPPMVVVGMVGYVETPRGLRSLTTVW 60
Query: 144 AEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
AEHLS E +RRFYKNWY+S++KAFTK +KK + G+ +IA++L ++ KYC V+RV+AHT
Sbjct: 61 AEHLSDEVKRRFYKNWYRSKKKAFTKYAKKHSENNGQ-SIARELERIRKYCSVVRVLAHT 119
Query: 204 QNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSV 263
Q + SL +QKKAHLMEIQ+NGGSV
Sbjct: 120 QLRNTSL------------------------------------KQKKAHLMEIQVNGGSV 143
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
++K+ +A E+ + V +F QDE++D IGVTKGKG++G
Sbjct: 144 SEKVDFANNLFEKTVDVNSLFTQDELVDVIGVTKGKGYEG 183
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/123 (67%), Positives = 100/123 (81%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSV++K+ +A E+ + V +F QDE++D IGVTKGKG++GVT+
Sbjct: 127 KQKKAHLMEIQVNGGSVSEKVDFANNLFEKTVDVNSLFTQDELVDVIGVTKGKGYEGVTA 186
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW KLPRKTHKGLRKVACIGAWHP+ V FTVAR+GQ GYHHRTELNKKIYR+G G
Sbjct: 187 RWGITKLPRKTHKGLRKVACIGAWHPANVMFTVARSGQDGYHHRTELNKKIYRIGNGADK 246
Query: 434 KDG 436
G
Sbjct: 247 ASG 249
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/122 (63%), Positives = 91/122 (74%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT+RW KLPRKTHKGLRKVACIGAWHP+ V FTVAR+GQ GYHHRTEL
Sbjct: 174 GVTKGKGYEGVTARWGITKLPRKTHKGLRKVACIGAWHPANVMFTVARSGQDGYHHRTEL 233
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + K + +T++D T+KSITPMGGFPHYG V NDFLMIKG C G KKRV+T+
Sbjct: 234 NKKIYRIGNGADKASGATEFDTTQKSITPMGGFPHYGIVKNDFLMIKGSCPGVKKRVLTI 293
Query: 550 RK 551
RK
Sbjct: 294 RK 295
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSV++K+ +A E+ + V +F QDE++D I
Sbjct: 114 RVLAHTQLRNTSLKQKKAHLMEIQVNGGSVSEKVDFANNLFEKTVDVNSLFTQDELVDVI 173
Query: 605 GVTKGKGFK 613
GVTKGKG++
Sbjct: 174 GVTKGKGYE 182
>gi|160331207|ref|XP_001712311.1| rpl3 [Hemiselmis andersenii]
gi|159765758|gb|ABW97986.1| rpl3 [Hemiselmis andersenii]
Length = 388
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 165/268 (61%), Gaps = 39/268 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF PKKR R +GK+K FPKD+ P HLTA IG+KAGMTH+VR D
Sbjct: 2 SHRKYEAPRHGSLGFLPKKRCRRGKGKIKSFPKDNENHPCHLTASIGFKAGMTHVVRTVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWA-EHLSQECRRRFYK 157
+ GSK++ K++VEAVT++ETPP+ IVG +GY++TP GLRSF+TVW+ + +E +R FYK
Sbjct: 62 KFGSKLHGKDVVEAVTVIETPPLQIVGFVGYIKTPKGLRSFRTVWSTNNFPEEFKRNFYK 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRK--MAKYCKVIRVIAHTQNQQQSLHQNQQ 215
NWYKS++KAF K K + G K + K+C +IR IA ++ + L
Sbjct: 122 NWYKSKRKAFKKKQKTELEYNGFSVFENQKIKFQIKKFCPIIRCIAFSKISKTGL----- 176
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
+QKKA ++EIQ+NGG+ KI + + +
Sbjct: 177 -------------------------------KQKKAPVLEIQINGGNTTQKINFVEKISQ 205
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ I + +F Q E+ID IG+TKGKGF+G
Sbjct: 206 KEISISDIFRQREIIDTIGITKGKGFQG 233
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 86/122 (70%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G V RW KLPRKTH+G RKVAC+G+WHPSRV F V RAGQ G+HHRT++
Sbjct: 224 GITKGKGFQGVIKRWGVTKLPRKTHRGARKVACVGSWHPSRVSFRVPRAGQTGFHHRTQI 283
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
L + + NN ST++DL+ K ITPMGGFP+YG V DFL++KGC MG KKR ITL
Sbjct: 284 NLQIYRVGKALDSNNGSTEFDLSTKKITPMGGFPYYGNVKEDFLLLKGCVMGSKKRQITL 343
Query: 550 RK 551
RK
Sbjct: 344 RK 345
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 92/123 (74%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKA ++EIQ+NGG+ KI + + ++ I + +F Q E+ID IG+TKGKGF+GV
Sbjct: 177 KQKKAPVLEIQINGGNTTQKINFVEKISQKEISISDIFRQREIIDTIGITKGKGFQGVIK 236
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
RW KLPRKTH+G RKVAC+G+WHPSRV F V RAGQ G+HHRT++N +IYR+G + +
Sbjct: 237 RWGVTKLPRKTHRGARKVACVGSWHPSRVSFRVPRAGQTGFHHRTQINLQIYRVGKALDS 296
Query: 434 KDG 436
+G
Sbjct: 297 NNG 299
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 533 LMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 592
IK C P R I K+ +QKKA ++EIQ+NGG+ KI + + ++ I +
Sbjct: 154 FQIKKFC--PIIRCIAFSKISKTGLKQKKAPVLEIQINGGNTTQKINFVEKISQKEISIS 211
Query: 593 QVFAQDEMIDCIGVTKGKGFKECV 616
+F Q E+ID IG+TKGKGF+ +
Sbjct: 212 DIFRQREIIDTIGITKGKGFQGVI 235
>gi|326437340|gb|EGD82910.1| ribosomal protein L3 isoform a [Salpingoeca sp. ATCC 50818]
Length = 235
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 155/240 (64%), Gaps = 43/240 (17%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF PKKR+ HRG+V+ FP+D+ HLTAFIGYKAGMTHIVRE D
Sbjct: 2 SHRKFRAPRHGSLGFLPKKRTKHHRGRVRSFPRDNKEDKPHLTAFIGYKAGMTHIVREMD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GSK +KKE+VEAVT++ETPPMV VG++GYVETP GLR TV+A ++S+ C RRFYKN
Sbjct: 62 RTGSKAHKKEVVEAVTVVETPPMVGVGIVGYVETPRGLRQLTTVFAGNMSETCMRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+ KS++K F+K + + + GKK LR++AKYC VIRVIAHT
Sbjct: 122 YVKSKKKQFSKYFARLKTEEGKKNFEDQLRRLAKYCTVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
++ +L RQK+AH+MEIQ+NGG+ R +QP+
Sbjct: 167 ---------------------KIDVLNLRQKRAHIMEIQVNGGT-------PRGETDQPV 198
>gi|342180583|emb|CCC90059.1| putative ribosomal protein L3, mitochondrial [Trypanosoma
congolense IL3000]
Length = 428
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 156/266 (58%), Gaps = 36/266 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGM-THIVREA 97
SH KF PRHG +GF P+KRS + RG+ + FPKDDP++ HLT+F+ YKA H R
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAXYDAHCARR- 60
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
RPGSK+NKKE+VE VTILE PPMV+VG +GY +TP G ++ TVWA H S E RRRFYK
Sbjct: 61 -RPGSKVNKKEVVEPVTILEAPPMVVVGFVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYK 119
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
NW +S Q AFTK + + G+ A+ L+ AK +IRV+AHTQ ++ L N+
Sbjct: 120 NWKQSAQLAFTKRKQFARTTEGRLAEARTLKAFAKKADIIRVVAHTQLRK--LRNNRVG- 176
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
KKAH+ EIQ+NGG++A KI A+ LE+
Sbjct: 177 ------------------------------VKKAHVSEIQINGGTIAQKIELAKSLLEKE 206
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ + VF Q E D VTKG GF G
Sbjct: 207 VRIDSVFQQSEACDVCAVTKGHGFTG 232
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 90/126 (71%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTKG GF GV RW
Sbjct: 178 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 237
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT LNKKIY++G + +
Sbjct: 238 GVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP 297
Query: 436 GKVSVT 441
+ + +
Sbjct: 298 NQATTS 303
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 86/120 (71%), Gaps = 6/120 (5%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT L KK
Sbjct: 229 GFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTH--LNKKI 286
Query: 496 Y-LSMVIK---NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y L + N A+T YDLT K+ITPMGGF YG V ND++M+KG GP++RVITLR+
Sbjct: 287 YQLGRAVSMEPNQATTSYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRR 346
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRK++ + KKAH+ EIQ+NGG++A KI A+ LE+ + + VF Q E D VTK
Sbjct: 167 LRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTK 226
Query: 609 GKGFKECV 616
G GF V
Sbjct: 227 GHGFTGVV 234
>gi|294866225|ref|XP_002764639.1| 60S ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
gi|239864270|gb|EEQ97356.1| 60S ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
Length = 182
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 129/174 (74%), Gaps = 8/174 (4%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ H+GKVK FPKDD +KP HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFEVPRHGSLGFLPRKRTRHHKGKVKSFPKDDQSKPCHLTAFMGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+++KE+VEAVT+LE PPMV VG +GYVETP+GLR+ TVWA+HLS E RRRFYKN
Sbjct: 62 KPGSKLHRKEVVEAVTVLEAPPMVCVGFVGYVETPNGLRALTTVWAKHLSDEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
WY S++K AS K ++T+ + +V+R I HTQ + L Q
Sbjct: 122 WYHSKKKL--SASTK------RRTMTLRSSGVRSTARVVRAIMHTQVSKVKLTQ 167
>gi|296219367|ref|XP_002755828.1| PREDICTED: 60S ribosomal protein L3-like [Callithrix jacchus]
Length = 424
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/138 (72%), Positives = 119/138 (86%)
Query: 301 FKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 360
K ++ MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I
Sbjct: 178 MKNHVLQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVI 237
Query: 361 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 420
VTKG+G KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTEL
Sbjct: 238 AVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL 297
Query: 421 NKKIYRMGAGIHTKDGKV 438
NKKIYR+G G+H +DGK+
Sbjct: 298 NKKIYRIGRGLHMEDGKL 315
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 148/265 (55%), Gaps = 63/265 (23%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 46 SHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 105
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG + L +P ++ + H L H+++E +
Sbjct: 106 RPG-------LSAWTAGLASPFSELLHLC------HSLSGPGDSEGAHITEE------ET 146
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+KS++KAFTKA K+W+D GKK + +D M +
Sbjct: 147 GHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKNHV------------------------ 182
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 183 --------------------LQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 222
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 223 PVHSVFSQSEVIDVIAVTKGRGVKG 247
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 109/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 244 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 301
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 302 YRIGRGLHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRV 361
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 362 ITLRKSLLVHHSRQALENIELKF 384
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 610
+MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+
Sbjct: 184 QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGR 243
Query: 611 GFK 613
G K
Sbjct: 244 GVK 246
>gi|110456408|gb|ABG74707.1| putative ribosomal protein L3e, partial [Diaphorina citri]
Length = 201
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/150 (74%), Positives = 116/150 (77%), Gaps = 15/150 (10%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL
Sbjct: 6 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 65
Query: 490 FLCKKKYLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
KK M VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC
Sbjct: 66 ---NKKIYRMGAGIHTKDGKVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 122
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
MGPKKRVITLRK L+ K+ L +I L
Sbjct: 123 MGPKKRVITLRKSLLV--HTKRVALEKINL 150
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 415
MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH
Sbjct: 1 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 60
Query: 416 HRTELNKKIYRMGAGIHTKDGKV 438
HRTELNKKIYRMGAGIHTKDGKV
Sbjct: 61 HRTELNKKIYRMGAGIHTKDGKV 83
>gi|345802423|ref|XP_547185.3| PREDICTED: ribosomal protein L3-like [Canis lupus familiaris]
Length = 255
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q+E+ID I VTKG+G
Sbjct: 16 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEVIDVIAVTKGRG 75
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 76 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 135
Query: 428 GAGIHTKDGKV 438
G G+H ++GKV
Sbjct: 136 GRGLHMEEGKV 146
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/139 (66%), Positives = 109/139 (78%), Gaps = 11/139 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY--- 496
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 79 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 136
Query: 497 --LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L M V+KNNA+T YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLR
Sbjct: 137 RGLHMEEGKVVKNNAATSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 196
Query: 551 KMKLLKKRQKKAHLMEIQL 569
K L+ ++ +E++
Sbjct: 197 KSLLVHHSRRALENIELKF 215
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 66/114 (57%), Gaps = 36/114 (31%)
Query: 190 MAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQK 249
M KYCKVIRVI HTQ MKLL RQK
Sbjct: 1 MKKYCKVIRVIVHTQ------------------------------------MKLLPFRQK 24
Query: 250 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
KAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q+E+ID I VTKG+G KG
Sbjct: 25 KAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEVIDVIAVTKGRGVKG 78
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q+E+ID I
Sbjct: 9 RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEVIDVI 68
Query: 605 GVTKGKGFK 613
VTKG+G K
Sbjct: 69 AVTKGRGVK 77
>gi|355709847|gb|EHH31311.1| 60S ribosomal protein L3-like protein, partial [Macaca mulatta]
Length = 284
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 45 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 104
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 105 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 164
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 165 GRGLHMEDGKL 175
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 93/139 (66%), Positives = 108/139 (77%), Gaps = 11/139 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY--- 496
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 108 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 165
Query: 497 --LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L M ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLR
Sbjct: 166 RGLHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 225
Query: 551 KMKLLKKRQKKAHLMEIQL 569
K L+ ++ +E++
Sbjct: 226 KSLLVHHSRQAVENIELKF 244
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 86/144 (59%), Gaps = 37/144 (25%)
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI H
Sbjct: 1 HKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVH----------------- 43
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +P
Sbjct: 44 --------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVP 83
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+Q E+ID I VTKG+G KG
Sbjct: 84 VHSVFSQSEVIDVIAVTKGRGVKG 107
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C K + + +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 23 QLQKDFAAMKKYC---KVIRVIVHQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 79
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 80 KQVPVHSVFSQSEVIDVIAVTKGRGVK 106
>gi|149052059|gb|EDM03876.1| rCG33081 [Rattus norvegicus]
Length = 255
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 116/131 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 16 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 75
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 76 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 135
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 136 GRGLHMEDGKM 146
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 109/139 (78%), Gaps = 11/139 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY--- 496
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 79 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 136
Query: 497 --LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L M +++NNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLR
Sbjct: 137 RGLHMEDGKMVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 196
Query: 551 KMKLLKKRQKKAHLMEIQL 569
K L+ ++ +E++
Sbjct: 197 KSLLVHHSRRALENIELKF 215
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 65/114 (57%), Gaps = 36/114 (31%)
Query: 190 MAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQK 249
M KYCKVIRVI HTQ MKLL RQK
Sbjct: 1 MKKYCKVIRVIVHTQ------------------------------------MKLLPFRQK 24
Query: 250 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
KAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G KG
Sbjct: 25 KAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKG 78
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I
Sbjct: 9 RVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVI 68
Query: 605 GVTKGKGFK 613
VTKG+G K
Sbjct: 69 AVTKGRGVK 77
>gi|432102535|gb|ELK30106.1| 60S ribosomal protein L3-like protein [Myotis davidii]
Length = 227
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 60
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 61 IKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 120
Query: 428 GAGIHTKDGKV 438
G G H +DGKV
Sbjct: 121 GRGFHKEDGKV 131
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 96/158 (60%), Gaps = 26/158 (16%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 64 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 121
Query: 498 -------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPK------- 543
V+KNNAST YDLT+KSITP+ H+ + + +K K
Sbjct: 122 RGFHKEDGKVVKNNASTSYDLTDKSITPLSLLVHHSRRALENIELKFIDTTSKFGHGRFQ 181
Query: 544 ----KRVITLR-KMKLLKKRQKKAHLMEIQLNGGSVAD 576
KRV + + LL + +HL++ +GG+ AD
Sbjct: 182 TAQEKRVFMVSPPIALLWGSDRTSHLLQ---SGGAGAD 216
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 52/63 (82%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 60
Query: 301 FKG 303
KG
Sbjct: 61 IKG 63
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 51/62 (82%)
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 60
Query: 612 FK 613
K
Sbjct: 61 IK 62
>gi|327287585|ref|XP_003228509.1| PREDICTED: 60S ribosomal protein L3-like [Anolis carolinensis]
Length = 399
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+ WA + +E+ I V VF+Q EMID IGVTKG G
Sbjct: 160 MKLLPMRQKKAHVMEIQLNGGTVAEKVDWAHEKMEKQISVQSVFSQSEMIDVIGVTKGHG 219
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTELNKKIYR+
Sbjct: 220 MKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTELNKKIYRI 279
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 280 GRGVHVEDGKM 290
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 139/201 (69%), Gaps = 36/201 (17%)
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKS 162
+++K+E VEAVTI+ETPP+V+VGV+GY+ETP GLRSF+T++AEH+S ECRRRFYKNW+KS
Sbjct: 58 EVSKREEVEAVTIIETPPLVVVGVVGYIETPRGLRSFRTIFAEHISDECRRRFYKNWHKS 117
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
++KAFTK KKWQD+ GKK + +D M KYCKVIRVI HT
Sbjct: 118 KKKAFTKFCKKWQDETGKKQLEKDFAAMKKYCKVIRVIVHT------------------- 158
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
QMKLL RQKKAH+MEIQLNGG+VA+K+ WA + +E+ I V
Sbjct: 159 -----------------QMKLLPMRQKKAHVMEIQLNGGTVAEKVDWAHEKMEKQISVQS 201
Query: 283 VFAQDEMIDCIGVTKGKGFKG 303
VF+Q EMID IGVTKG G KG
Sbjct: 202 VFSQSEMIDVIGVTKGHGMKG 222
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 111/149 (74%), Gaps = 11/149 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +++ARAGQKGYHHRTE
Sbjct: 213 GVTKGHGMKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGYSIARAGQKGYHHRTE- 271
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
L KK Y +++NN ST+YD TEK+ITPMGGFPHYGEVNNDF+M+KGC +
Sbjct: 272 -LNKKIYRIGRGVHVEDGKMVRNNGSTNYDTTEKTITPMGGFPHYGEVNNDFVMVKGCVV 330
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
G KKRV+TLRK L+ +K +E++
Sbjct: 331 GTKKRVLTLRKSLLVHTSRKALEPIELKF 359
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+ WA + +E
Sbjct: 137 QLEKDFAAMKKYCK--VIRVIVHTQMKLLPMRQKKAHVMEIQLNGGTVAEKVDWAHEKME 194
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ I V VF+Q EMID IGVTKG G K
Sbjct: 195 KQISVQSVFSQSEMIDVIGVTKGHGMK 221
>gi|284073166|gb|ADB77822.1| 60S ribosomal protein L3 [Phyllodictyon orientale]
Length = 236
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 131/265 (49%), Positives = 169/265 (63%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF R GS+GF PKKR R RG+VK FPKDDP+KP HLTAF+G+KAGMTHIVR+ D
Sbjct: 1 SHRKFEHARCGSLGFLPKKRCRRGRGRVKSFPKDDPSKPPHLTAFMGFKAGMTHIVRDVD 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE+ E VTI+E PPMV+VGV+GY T G R+ WA H++ RRRFYKN
Sbjct: 61 KPGSKVHKKEVCEPVTIVECPPMVVVGVVGYATTHRGQRTIGCAWAAHINDTLRRRFYKN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WY++++KAF K + K+ D G KTI L + K VIRV+AH
Sbjct: 121 WYRAKKKAFKKHATKYDD--GAKTIMAQLEHLKKEATVIRVLAH---------------- 162
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
TQPD +++ KKAHL+EIQ+NGG+ DK+ +A E+ I
Sbjct: 163 -----------TQPD---------MVRLGIKKAHLIEIQVNGGTAPDKVDFAYNLFEKEI 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG +F +DEMID I +TKG+G +G
Sbjct: 203 RVGTIFGKDEMIDTIAITKGRGTQG 227
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAHL+EIQ+NGG+ DK+ +A E+ I VG +F +DEMID I +TKG+G +GV +RW
Sbjct: 173 KKAHLIEIQVNGGTAPDKVDFAYNLFEKEIRVGTIFGKDEMIDTIAITKGRGTQGVVTRW 232
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ + +++ KKAHL+EIQ+NGG+ DK+ +A E+ I VG +F +DEMID I
Sbjct: 158 RVLAHTQPDMVRLGIKKAHLIEIQVNGGTAPDKVDFAYNLFEKEIRVGTIFGKDEMIDTI 217
Query: 605 GVTKGKGFKECV 616
+TKG+G + V
Sbjct: 218 AITKGRGTQGVV 229
>gi|71984550|ref|NP_001021256.1| Protein RPL-3, isoform d [Caenorhabditis elegans]
gi|51011805|emb|CAH10798.1| Protein RPL-3, isoform d [Caenorhabditis elegans]
Length = 303
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 114/130 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ + V VFAQDEMID IGVT+G G
Sbjct: 70 MKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 129
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT +N KIYR+
Sbjct: 130 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRI 189
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 190 GKSALTEEGK 199
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 107/138 (77%), Gaps = 5/138 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT-- 487
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT
Sbjct: 123 GVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTII 182
Query: 488 --ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+++ K L+ KNN ST++DLT+K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 183 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 242
Query: 546 VITLRKMKLLKKRQKKAH 563
+ITLRK L+ + ++ AH
Sbjct: 243 LITLRK-SLITQTKRVAH 259
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 87/144 (60%), Gaps = 36/144 (25%)
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
Y+ R KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHTQ
Sbjct: 25 YRGRIKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQ--------------- 69
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ +
Sbjct: 70 ---------------------MKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQ 108
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
V VFAQDEMID IGVT+G GFKG
Sbjct: 109 VDTVFAQDEMIDTIGVTRGHGFKG 132
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+
Sbjct: 48 IEADFAKLKKYCSSI--RVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEK 105
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ V VFAQDEMID IGVT+G GFK
Sbjct: 106 QVQVDTVFAQDEMIDTIGVTRGHGFK 131
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPK 71
SHRKFSAPRHG MGF PKKRS +RG++K F K
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 10 SHRKFSAPRHGSMGFYPKKRSARHRVKKASHRKFS 44
SHRKFSAPRHG MGF PKKRS +R + + K++
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTKYA 36
>gi|291410166|ref|XP_002721357.1| PREDICTED: ribosomal protein L3-like isoform 2 [Oryctolagus
cuniculus]
Length = 351
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 118/128 (92%), Gaps = 3/128 (2%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFS PRHGS+GF P+K S++HRGKV PKDDP+KPVHLTAF+GYKAG+THIV+E D
Sbjct: 2 SHRKFSVPRHGSLGFLPRKCSSQHRGKV---PKDDPSKPVHLTAFLGYKAGLTHIVQEVD 58
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGS++NKKE+VEAVTI+ETPPMV++G++GYVETP GLR+FK ++AEH+S +C+RRFYKN
Sbjct: 59 RPGSEVNKKEVVEAVTIVETPPMVVMGIVGYVETPRGLRTFKMMFAEHISDKCKRRFYKN 118
Query: 159 WYKSRQKA 166
W+KS++KA
Sbjct: 119 WHKSKKKA 126
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/126 (75%), Positives = 110/126 (87%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+K VT
Sbjct: 121 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKAVT 180
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIH 432
SRWHTKKLP KTH+GLRKVACIGAWHP+RV F+VA AGQKGYHHRTE+NKKIY++G G
Sbjct: 181 SRWHTKKLPHKTHRGLRKVACIGAWHPARVAFSVAWAGQKGYHHRTEINKKIYKIGQGYL 240
Query: 433 TKDGKV 438
KD K+
Sbjct: 241 IKDRKL 246
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 110/150 (73%), Gaps = 15/150 (10%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G +VTSRWHTKKLP KTH+GLRKVACIGAWHP+RV F+VA AGQKGYHHRTE+
Sbjct: 169 GVTKGKGYKAVTSRWHTKKLPHKTHRGLRKVACIGAWHPARVAFSVAWAGQKGYHHRTEI 228
Query: 490 ----------FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+L K + L IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC
Sbjct: 229 NKKIYKIGQGYLIKDRKL---IKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCV 285
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
+G KKRV+TL K L+ + K+ L +I L
Sbjct: 286 VGTKKRVLTLHKS--LQVQTKRRALEKIDL 313
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM 305
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+K +
Sbjct: 121 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKA-V 179
Query: 306 IAMKLLKKRQKKAH--LMEIQLNG----GSVADKIAWARQ 339
+ KK K H L ++ G VA +AWA Q
Sbjct: 180 TSRWHTKKLPHKTHRGLRKVACIGAWHPARVAFSVAWAGQ 219
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
K +KKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+K
Sbjct: 121 KSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYK 177
>gi|55391486|gb|AAH85243.1| Rpl3l protein, partial [Mus musculus]
Length = 281
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AW + +E+ +PV VF+Q E+ID I VTKG+G
Sbjct: 42 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRG 101
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 102 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 161
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 162 GRGLHMEDGKM 172
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 110/143 (76%), Gaps = 11/143 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK
Sbjct: 101 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKI 158
Query: 496 Y-----LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y L M +++NNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRV
Sbjct: 159 YRIGRGLHMEDGKMVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRV 218
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L+ ++ +E++
Sbjct: 219 ITLRKSLLVHHSRRALENIELKF 241
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 82/140 (58%), Gaps = 36/140 (25%)
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+KAFTKA K+W+D GKK + +D M KYCKVIRVI HTQ
Sbjct: 1 KKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQ------------------- 41
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
MKLL RQKKAH+MEIQLNGG+VA+K+AW + +E+ +PV V
Sbjct: 42 -----------------MKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQVPVHSV 84
Query: 284 FAQDEMIDCIGVTKGKGFKG 303
F+Q E+ID I VTKG+G KG
Sbjct: 85 FSQSEVIDVIAVTKGRGVKG 104
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AW + +E
Sbjct: 19 QLQKDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARME 76
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 77 KQVPVHSVFSQSEVIDVIAVTKGRGVK 103
>gi|13384820|ref|NP_079701.1| ribosomal protein L3-like isoform 2 [Mus musculus]
gi|12832343|dbj|BAB22066.1| unnamed protein product [Mus musculus]
gi|12835407|dbj|BAB23247.1| unnamed protein product [Mus musculus]
gi|148690417|gb|EDL22364.1| ribosomal protein L3-like [Mus musculus]
gi|148877901|gb|AAI45877.1| Ribosomal protein L3-like [Mus musculus]
gi|148877992|gb|AAI45879.1| Ribosomal protein L3-like [Mus musculus]
Length = 240
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AW + +E+ +PV VF+Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRG 60
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 61 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 120
Query: 428 GAGIHTKDGKV 438
G G+H +DGK+
Sbjct: 121 GRGLHMEDGKM 131
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 109/139 (78%), Gaps = 11/139 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY--- 496
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 64 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 121
Query: 497 --LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L M +++NNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLR
Sbjct: 122 RGLHMEDGKMVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRVITLR 181
Query: 551 KMKLLKKRQKKAHLMEIQL 569
K L+ ++ +E++
Sbjct: 182 KSLLVHHSRRALENIELKF 200
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 51/63 (80%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
MKLL RQKKAH+MEIQLNGG+VA+K+AW + +E+ +PV VF+Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRG 60
Query: 301 FKG 303
KG
Sbjct: 61 VKG 63
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 50/62 (80%)
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
MKLL RQKKAH+MEIQLNGG+VA+K+AW + +E+ +PV VF+Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRG 60
Query: 612 FK 613
K
Sbjct: 61 VK 62
>gi|355717191|gb|AES05853.1| ribosomal protein L3-like protein [Mustela putorius furo]
Length = 280
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 114/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K AWA+ LE+ I V VF+Q E+ID I VTKG+G
Sbjct: 41 MKLLPFRQKKAHIMEIQLNGGTVAEKGAWAQARLEKQISVHSVFSQSEVIDVIAVTKGRG 100
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 101 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 160
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 161 GRGLHKEDGKV 171
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 91/139 (65%), Positives = 107/139 (76%), Gaps = 11/139 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 104 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 161
Query: 498 -------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
V++NNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLR
Sbjct: 162 RGLHKEDGKVVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 221
Query: 551 KMKLLKKRQKKAHLMEIQL 569
K L+ ++ +E++
Sbjct: 222 KSLLVHHSRRALENIELKF 240
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 80/139 (57%), Gaps = 36/139 (25%)
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
KAFTKA K+W+D GKK + +D M KYCKVIRVI HTQ
Sbjct: 1 KAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQ-------------------- 40
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
MKLL RQKKAH+MEIQLNGG+VA+K AWA+ LE+ I V VF
Sbjct: 41 ----------------MKLLPFRQKKAHIMEIQLNGGTVAEKGAWAQARLEKQISVHSVF 84
Query: 285 AQDEMIDCIGVTKGKGFKG 303
+Q E+ID I VTKG+G KG
Sbjct: 85 SQSEVIDVIAVTKGRGVKG 103
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K AWA+ LE
Sbjct: 18 QLQKDFAAMKKYC--KVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKGAWAQARLE 75
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ I V VF+Q E+ID I VTKG+G K
Sbjct: 76 KQISVHSVFSQSEVIDVIAVTKGRGVK 102
>gi|70909597|emb|CAJ17224.1| ribosomal protein L3e [Micromalthus debilis]
Length = 178
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 109/156 (69%), Positives = 116/156 (74%), Gaps = 13/156 (8%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+ KK
Sbjct: 2 GYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEV--NKKI 59
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y VIKNNAST+YDLTEKSITPMGGFPHYGEVNNDF+MIKGCCMGPKKR+
Sbjct: 60 YRIGAGIHTKDGKVIKNNASTEYDLTEKSITPMGGFPHYGEVNNDFIMIKGCCMGPKKRI 119
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
ITLRK L+ K+ L +I L A K R
Sbjct: 120 ITLRKSLLV--HTKRVALEKINLKFIDTASKFGHGR 153
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/73 (94%), Positives = 72/73 (98%)
Query: 366 KGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
KG+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKGYHHRTE+NKKIY
Sbjct: 1 KGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEVNKKIY 60
Query: 426 RMGAGIHTKDGKV 438
R+GAGIHTKDGKV
Sbjct: 61 RIGAGIHTKDGKV 73
>gi|324528901|gb|ADY48966.1| 60S ribosomal protein L3, partial [Ascaris suum]
Length = 222
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/117 (81%), Positives = 107/117 (91%)
Query: 321 MEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKL 380
MEIQ+NGG+V +K+ WA++HLE+ + V VFAQDEMIDCIGVTKGKGFKGVTSRWHTKKL
Sbjct: 1 MEIQVNGGTVPEKVDWAKEHLEKQVAVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKL 60
Query: 381 PRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGK 437
PRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+G T++GK
Sbjct: 61 PRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGK 117
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 41 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEV 100
Query: 489 ---LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
++ K L+ K N T+YD+TEKSI PMGGFPHYG VN DF+MI+GCC+G KKR
Sbjct: 101 NKKIYRLGKSCLTEEGKRNGGTEYDITEKSINPMGGFPHYGLVNQDFVMIRGCCVGSKKR 160
Query: 546 VITLRKMKLLKKRQ 559
ITLRK +++ ++
Sbjct: 161 PITLRKSLIVQTKR 174
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 44/50 (88%)
Query: 254 MEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
MEIQ+NGG+V +K+ WA++HLE+ + V VFAQDEMIDCIGVTKGKGFKG
Sbjct: 1 MEIQVNGGTVPEKVDWAKEHLEKQVAVDSVFAQDEMIDCIGVTKGKGFKG 50
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 565 MEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
MEIQ+NGG+V +K+ WA++HLE+ + V VFAQDEMIDCIGVTKGKGFK
Sbjct: 1 MEIQVNGGTVPEKVDWAKEHLEKQVAVDSVFAQDEMIDCIGVTKGKGFK 49
>gi|239789793|dbj|BAH71497.1| ACYPI009439 [Acyrthosiphon pisum]
Length = 193
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 117/162 (72%), Gaps = 13/162 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 6 GVTKGRGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 64
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y VIKNNAST+YDLTEK+ITPMGGFPHYGEVNNDFLMIKGCC+
Sbjct: 65 -INKKIYRIGLGIHTKDGKVIKNNASTEYDLTEKTITPMGGFPHYGEVNNDFLMIKGCCV 123
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
GPKKRVIT K L+ K+A L I L + K R
Sbjct: 124 GPKKRVITFCKSLLV--HTKRAALESINLKFIDTSSKFGHGR 163
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/83 (93%), Positives = 82/83 (98%)
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 415
MIDCIGVTKG+G+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH
Sbjct: 1 MIDCIGVTKGRGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 60
Query: 416 HRTELNKKIYRMGAGIHTKDGKV 438
HRTE+NKKIYR+G GIHTKDGKV
Sbjct: 61 HRTEINKKIYRIGLGIHTKDGKV 83
>gi|226475920|emb|CAX72050.1| ribosomal protein L3 [Schistosoma japonicum]
Length = 202
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 124/192 (64%), Gaps = 46/192 (23%)
Query: 360 IGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 419
I VTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV +VARAGQKGY HRTE
Sbjct: 3 IDVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVARSVARAGQKGYFHRTE 62
Query: 420 LNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAG 479
LNKKIYR+G G+ Q VA+A
Sbjct: 63 LNKKIYRIGMGLQA--------------------------------------QLEVAKA- 83
Query: 480 QKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ R + L K K NAST++DLT K+ITP+GGFPHYGEV ND++MIKGCC
Sbjct: 84 EAAKDDRDKNVLPKP-------KGNASTEFDLTAKNITPIGGFPHYGEVRNDYVMIKGCC 136
Query: 540 MGPKKRVITLRK 551
MGP+KRVITLRK
Sbjct: 137 MGPRKRVITLRK 148
>gi|310771890|emb|CBH28886.1| 60S RIBOSOMAL PROTEIN L3 [Anncaliia algerae]
Length = 381
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 148/265 (55%), Gaps = 40/265 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF APRHGS+ F PKKR+ + +K F KDDP P+HLT F YKAGMTHIVR
Sbjct: 2 SCRKFEAPRHGSLAFCPKKRAKSVKQSIKSFEKDDPQSPIHLTGFYVYKAGMTHIVRNKI 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
K KEI+EAVT+LE PPMV+ G+ GYV T GL+ T+ + H++Q RRF KN
Sbjct: 62 MKDKKSTVKEILEAVTVLEAPPMVVFGIQGYVNTSEGLKLKTTLISSHVNQSVIRRFLKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+Y S +K +K + + IA + K C IRV+ HTQ + + +Q T
Sbjct: 122 FYTSSRKDMGSITKAITKEETDEKIA-----ILKECDSIRVMMHTQ-----IDRIKQIKT 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
KKAH+ EIQ+NGGSVADK+ WA LE+ +
Sbjct: 172 ------------------------------KKAHISEIQVNGGSVADKVEWAVSMLEKEV 201
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF ++++ID IGVTKGKGF G
Sbjct: 202 KVTDVFGENDLIDVIGVTKGKGFNG 226
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 92/117 (78%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+ KKAH+ EIQ+NGGSVADK+ WA LE+ + V VF ++++ID IGVTKGKGF GVT
Sbjct: 170 KTKKAHISEIQVNGGSVADKVEWAVSMLEKEVKVTDVFGENDLIDVIGVTKGKGFNGVTK 229
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
R+ TK LPRKT+KG RKVACIGAWHP+ V ++V RAGQ G+H RTE NK +Y++G G
Sbjct: 230 RFGTKILPRKTNKGKRKVACIGAWHPANVLYSVPRAGQLGFHRRTEYNKMVYKLGNG 286
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 97/158 (61%), Gaps = 17/158 (10%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT R+ TK LPRKT+KG RKVACIGAWHP+ V ++V RAGQ G+H RTE
Sbjct: 217 GVTKGKGFNGVTKRFGTKILPRKTNKGKRKVACIGAWHPANVLYSVPRAGQLGFHRRTE- 275
Query: 490 FLCKKKYLSMVIK-----NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
Y MV K + T+YDLTEK++ PMGGFPHYG V+NDF+MIKG C GP+K
Sbjct: 276 ------YNKMVYKLGNGKQSIKTEYDLTEKTVNPMGGFPHYGCVSNDFIMIKGSCPGPRK 329
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RV+ LR K + K IQL + KI R
Sbjct: 330 RVLALR-----KNLRNKVSTENIQLKFIDTSSKIGNGR 362
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 43/55 (78%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 612
+ KKAH+ EIQ+NGGSVADK+ WA LE+ + V VF ++++ID IGVTKGKGF
Sbjct: 170 KTKKAHISEIQVNGGSVADKVEWAVSMLEKEVKVTDVFGENDLIDVIGVTKGKGF 224
>gi|429962137|gb|ELA41681.1| hypothetical protein VICG_01314 [Vittaforma corneae ATCC 50505]
Length = 383
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 161/269 (59%), Gaps = 49/269 (18%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF APRHGS+ F PK+R++ R +K FP+DD T+P HLTAF+ YKAGMTH++R +
Sbjct: 2 SCRKFRAPRHGSLQFRPKRRASSIRPSIKAFPRDDSTQPCHLTAFLSYKAGMTHVIRSKE 61
Query: 99 -RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K KE++EAVTILETPPMVI GV+GY T GL+ K V AEH+S+ RR +
Sbjct: 62 VKSKTKSQTKELLEAVTILETPPMVIHGVVGYQRTIGGLKRTKVVLAEHMSEGVIRRMFT 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIA---QDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
+ K+ D +KT+ D+ ++ K VIRV+AH+Q
Sbjct: 122 KRF--------VPGMKYTDL--RKTVGFSQDDIEELKKTSDVIRVLAHSQVY-------- 163
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 274
K +PI QKKAH+ EIQ+NGGS+++K+ +A + L
Sbjct: 164 ----KIRPIH-----------------------QKKAHIAEIQVNGGSISEKVDFAIERL 196
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
E+ IP+ +VF+++E+ID IGVTKGKGF+G
Sbjct: 197 EREIPISEVFSENELIDTIGVTKGKGFQG 225
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 97/116 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAH+ EIQ+NGGS+++K+ +A + LE+ IP+ +VF+++E+ID IGVTKGKGF+GV R
Sbjct: 170 QKKAHIAEIQVNGGSISEKVDFAIERLEREIPISEVFSENELIDTIGVTKGKGFQGVIKR 229
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W + LPRKT+KG+RKVACIGAWHPSRV ++VARAGQ G+H RT++N +Y +G G
Sbjct: 230 WGVRILPRKTNKGIRKVACIGAWHPSRVMYSVARAGQLGFHRRTQMNLAVYAIGNG 285
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 88/128 (68%), Gaps = 2/128 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V RW + LPRKT+KG+RKVACIGAWHPSRV ++VARAGQ G+H RT++
Sbjct: 216 GVTKGKGFQGVIKRWGVRILPRKTNKGIRKVACIGAWHPSRVMYSVARAGQLGFHRRTQM 275
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
L Y + TD+DLT K+I P+GGF +YG V ND++M+KG GP+KRV+TL
Sbjct: 276 NLA--VYAIGNGNDPVVTDFDLTVKTINPLGGFVNYGSVKNDYIMVKGPVTGPRKRVVTL 333
Query: 550 RKMKLLKK 557
RK L KK
Sbjct: 334 RKSLLPKK 341
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 49/58 (84%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
QKKAH+ EIQ+NGGS+++K+ +A + LE+ IP+ +VF+++E+ID IGVTKGKGF+ +
Sbjct: 170 QKKAHIAEIQVNGGSISEKVDFAIERLEREIPISEVFSENELIDTIGVTKGKGFQGVI 227
>gi|198138918|gb|ACH81777.1| ribosomal protein L3 [Artemia franciscana]
Length = 194
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 117/156 (75%), Gaps = 13/156 (8%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHT+KLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKGYHHRTE + KK
Sbjct: 14 GYKGVTSRWHTRKLPRKTHKGLRKVACIGAWHPSRVKFTVARAGQKGYHHRTE--MNKKI 71
Query: 496 YL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
Y VIKNNAST+YDL+EKSITPMGGFPHYGEVNNDF+MIKGCC+G KKRV
Sbjct: 72 YRIGAGIHTKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCVGSKKRV 131
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLRK L + K++ L +I L A K R
Sbjct: 132 LTLRKS--LVPQTKRSALEKITLKFIDTASKFGHGR 165
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 82/85 (96%)
Query: 354 DEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKG 413
DE ID IG TKGKG+KGVTSRWHT+KLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG
Sbjct: 1 DENIDVIGTTKGKGYKGVTSRWHTRKLPRKTHKGLRKVACIGAWHPSRVKFTVARAGQKG 60
Query: 414 YHHRTELNKKIYRMGAGIHTKDGKV 438
YHHRTE+NKKIYR+GAGIHTKDGKV
Sbjct: 61 YHHRTEMNKKIYRIGAGIHTKDGKV 85
>gi|401828521|ref|XP_003887974.1| 60S ribosomal protein L3 [Encephalitozoon hellem ATCC 50504]
gi|392998982|gb|AFM98993.1| 60S ribosomal protein L3 [Encephalitozoon hellem ATCC 50504]
Length = 383
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 199/410 (48%), Gaps = 117/410 (28%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF+APRHGS+ F P+KRS R FP DD ++PVHLT F+GYKAGMTH++R
Sbjct: 2 SCRKFNAPRHGSLQFCPRKRSKTIRPSAGAFPADDSSQPVHLTGFMGYKAGMTHVIRTKT 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +E+++AVTILE PPMV+ G++GY T GLR V A ++S RR +
Sbjct: 62 QVAKNKQLSREVMDAVTILEAPPMVVYGIVGYERTVTGLRRLPIVLASYVSDGVLRRMFG 121
Query: 158 NWY--KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQ 215
N Y K K F AS+ + ++ ++ K + +RV+
Sbjct: 122 NNYVEKGNSKGFC-ASEDSESRIS---------EIKKRAECVRVLV-------------- 157
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQ-KKAHLMEIQLNGGSVADKIAWARQHL 274
+TQP L+KK KKAH+ EIQ+NGGS+++K+ WA L
Sbjct: 158 -------------QTQPG---------LIKKLGLKKAHIAEIQVNGGSISEKVDWALNML 195
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKI 334
E+ + VG VF ++E ID IGVTKGKGF+G + + K+ +K
Sbjct: 196 EKEVHVGDVFGENENIDVIGVTKGKGFQGTVKRFGVRKQPRK------------------ 237
Query: 335 AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACI 394
+R+ + + + CIG WH
Sbjct: 238 --SRKGIRK-------------VACIGA------------WH------------------ 252
Query: 395 GAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRW 444
PSRV ++VARAGQ G+H RTE NK++Y +G G + + +T ++
Sbjct: 253 ----PSRVMYSVARAGQMGFHRRTEKNKRVYMVGNGSSSIRTEFDLTEKF 298
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 94/130 (72%), Gaps = 6/130 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV ++VARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSVARAGQMGFHRRTE- 273
Query: 490 FLCKKKYLSMVIKNNAS--TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
K K + MV ++S T++DLTEK I+PMGGFPHYGEV NDF+M+KG +GP+KRV+
Sbjct: 274 ---KNKRVYMVGNGSSSIRTEFDLTEKFISPMGGFPHYGEVKNDFIMVKGAVVGPRKRVV 330
Query: 548 TLRKMKLLKK 557
TLRK ++K
Sbjct: 331 TLRKSLSMQK 340
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKRQ-KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RV+ + L+KK KKAH+ EIQ+NGGS+++K+ WA LE+ + VG VF ++E ID
Sbjct: 154 RVLVQTQPGLIKKLGLKKAHIAEIQVNGGSISEKVDWALNMLEKEVHVGDVFGENENIDV 213
Query: 604 IGVTKGKGFKECV 616
IGVTKGKGF+ V
Sbjct: 214 IGVTKGKGFQGTV 226
>gi|253747835|gb|EET02309.1| Ribosomal protein L3 [Giardia intestinalis ATCC 50581]
Length = 379
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 154/266 (57%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFS R G++G+ P+KR R RG+ K FP D P+HLTAF+GYKAG TH++R D
Sbjct: 2 SHRKFSCCRKGNLGYLPRKRCTRGRGRCKTFPPDVQGTPIHLTAFLGYKAGCTHVMRFID 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
GS ++ ++ ++ TI++ PPM+ +IGY +TP GLR+ TVWA H+++ RRFY+N
Sbjct: 62 HRGSNLHNRQAIDQATIIDAPPMICTAIIGYAKTPKGLRAVTTVWAAHIAEPAMRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
++ + + AF+ KK D I + L ++ ++ VIR++AHTQ L
Sbjct: 122 YFHANKTAFSTYMKKAAD---GTYIKEQLGRLKEHADVIRIVAHTQPALTPL-------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQP 277
+QKKA +MEIQ+NGG SVA+K+ +A +E+P
Sbjct: 171 ----------------------------KQKKADIMEIQVNGGKSVAEKVDYAYALMEKP 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I + VF + ID I +T+G+GF+G
Sbjct: 203 ISIKDVFEVGKQIDTISITRGRGFEG 228
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
Query: 310 LLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
L +QKKA +MEIQ+NGG SVA+K+ +A +E+PI + VF + ID I +T+G+GF
Sbjct: 167 LTPLKQKKADIMEIQVNGGKSVAEKVDYAYALMEKPISIKDVFEVGKQIDTISITRGRGF 226
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+GV +RW +LPRKT +G RKVACIG+WHP+ VQ+TVARAGQ GY HRT+ NK+++
Sbjct: 227 EGVVTRWGVTRLPRKTRRGNRKVACIGSWHPANVQYTVARAGQMGYFHRTDTNKQVF 283
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 16/166 (9%)
Query: 422 KKIYRMGAGIHTKD-----GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVA 476
K ++ +G I T G V +RW +LPRKT +G RKVACIG+WHP+ VQ+TVA
Sbjct: 206 KDVFEVGKQIDTISITRGRGFEGVVTRWGVTRLPRKTRRGNRKVACIGSWHPANVQYTVA 265
Query: 477 RAGQKGYHHRTELFLCKKKYLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVNNDFL 533
RAGQ GY HRT+ K+ + N +T++DLT+KSI P+GGF +YG + DF+
Sbjct: 266 RAGQMGYFHRTDT---NKQVFMIDTAENPRCCTTEFDLTDKSINPVGGFVNYGRIQGDFI 322
Query: 534 MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIA 579
MIKG C GPK+R + +R LL R + +QL S A K
Sbjct: 323 MIKGTCPGPKRRPVVMRS-SLLPHR----NYPPVQLQWISTASKFG 363
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R++ + L +QKKA +MEIQ+NGG SVA+K+ +A +E+PI + VF + ID
Sbjct: 158 RIVAHTQPALTPLKQKKADIMEIQVNGGKSVAEKVDYAYALMEKPISIKDVFEVGKQIDT 217
Query: 604 IGVTKGKGFKECV 616
I +T+G+GF+ V
Sbjct: 218 ISITRGRGFEGVV 230
>gi|308160270|gb|EFO62765.1| Ribosomal protein L3 [Giardia lamblia P15]
Length = 379
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 154/266 (57%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFS R G++G+ P+KR R RG+ K FP D P+HLTAF+GYKAG TH++R D
Sbjct: 2 SHRKFSCCRKGNLGYLPRKRCTRGRGRCKAFPPDVQGAPIHLTAFLGYKAGCTHVMRFID 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
GS ++ ++ ++ TI++ PPM+ +IGY +TP GLR+ TVWA H+++ RRFY+N
Sbjct: 62 HRGSNLHNRQAIDQATIIDAPPMICTAIIGYAKTPKGLRAVTTVWAAHIAEPAMRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
++ + + AF+ KK D I + L ++ ++ VIR++AHTQ L
Sbjct: 122 YFHAEKTAFSTYMKKAAD---GTYIKEQLGRLKQHADVIRIVAHTQPALTPL-------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQP 277
+QKKA +MEIQ+NGG+ VA+K+ +A +E+P
Sbjct: 171 ----------------------------KQKKADIMEIQVNGGANVAEKVDYAYALMEKP 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I + VF+ ID I +T+G+GF+G
Sbjct: 203 ISIKDVFSVGAQIDTISITRGRGFEG 228
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
Query: 310 LLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
L +QKKA +MEIQ+NGG+ VA+K+ +A +E+PI + VF+ ID I +T+G+GF
Sbjct: 167 LTPLKQKKADIMEIQVNGGANVAEKVDYAYALMEKPISIKDVFSVGAQIDTISITRGRGF 226
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+GV +RW +LPRKT +G RKVACIGAWHP+ VQ+TVARAGQ GY HRT+ NK+++
Sbjct: 227 EGVVTRWGVTRLPRKTRRGNRKVACIGAWHPANVQYTVARAGQMGYFHRTDTNKQVF 283
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 90/141 (63%), Gaps = 11/141 (7%)
Query: 422 KKIYRMGAGIHTKD-----GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVA 476
K ++ +GA I T G V +RW +LPRKT +G RKVACIGAWHP+ VQ+TVA
Sbjct: 206 KDVFSVGAQIDTISITRGRGFEGVVTRWGVTRLPRKTRRGNRKVACIGAWHPANVQYTVA 265
Query: 477 RAGQKGYHHRTELFLCKKKYLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVNNDFL 533
RAGQ GY HRT+ K+ + N +T++DLT+KSI P+GGF +YG V DF+
Sbjct: 266 RAGQMGYFHRTDT---NKQVFMIDTAENPKCCTTEFDLTDKSINPVGGFVNYGRVQGDFI 322
Query: 534 MIKGCCMGPKKRVITLRKMKL 554
MIKG C GPK+R + +R L
Sbjct: 323 MIKGTCPGPKRRPVVMRSALL 343
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R++ + L +QKKA +MEIQ+NGG+ VA+K+ +A +E+PI + VF+ ID
Sbjct: 158 RIVAHTQPALTPLKQKKADIMEIQVNGGANVAEKVDYAYALMEKPISIKDVFSVGAQIDT 217
Query: 604 IGVTKGKGFKECV 616
I +T+G+GF+ V
Sbjct: 218 ISITRGRGFEGVV 230
>gi|159109947|ref|XP_001705236.1| Ribosomal protein L3 [Giardia lamblia ATCC 50803]
gi|157433317|gb|EDO77562.1| Ribosomal protein L3 [Giardia lamblia ATCC 50803]
Length = 379
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 154/266 (57%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFS R G++G+ P+KR R RG+ K FP D P+HLTAF+GYKAG TH++R D
Sbjct: 2 SHRKFSCCRKGNLGYLPRKRCTRGRGRCKTFPPDVQGAPIHLTAFLGYKAGCTHVMRFID 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
GS ++ ++ ++ TI++ PPM+ +IGY +TP GLR+ TVWA H+++ RRFY+N
Sbjct: 62 HRGSNLHNRQAIDQATIIDAPPMICTAIIGYAKTPKGLRAVTTVWAAHIAEPAMRRFYRN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
++ + + AF+ KK D I + L ++ ++ VIR++AHTQ L
Sbjct: 122 YFHAEKTAFSTYMKKAAD---GTYIKEQLGRLKQHADVIRIVAHTQPALTPL-------- 170
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQP 277
+QKKA +MEIQ+NGG+ VA+K+ +A +E+P
Sbjct: 171 ----------------------------KQKKADIMEIQVNGGANVAEKVDYAYALMEKP 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I + VF+ ID I +T+G+GF+G
Sbjct: 203 ISIKDVFSVGAQIDTISITRGRGFEG 228
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
Query: 310 LLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
L +QKKA +MEIQ+NGG+ VA+K+ +A +E+PI + VF+ ID I +T+G+GF
Sbjct: 167 LTPLKQKKADIMEIQVNGGANVAEKVDYAYALMEKPISIKDVFSVGAQIDTISITRGRGF 226
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+GV +RW +LPRKT +G RKVACIGAWHP+ VQ+TVARAGQ GY HRT+ NK+++
Sbjct: 227 EGVVTRWGVTRLPRKTRRGNRKVACIGAWHPANVQYTVARAGQMGYFHRTDTNKQVF 283
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 90/141 (63%), Gaps = 11/141 (7%)
Query: 422 KKIYRMGAGIHTKD-----GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVA 476
K ++ +GA I T G V +RW +LPRKT +G RKVACIGAWHP+ VQ+TVA
Sbjct: 206 KDVFSVGAQIDTISITRGRGFEGVVTRWGVTRLPRKTRRGNRKVACIGAWHPANVQYTVA 265
Query: 477 RAGQKGYHHRTELFLCKKKYLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVNNDFL 533
RAGQ GY HRT+ K+ + N +T++DLT+KSI P+GGF +YG V DF+
Sbjct: 266 RAGQMGYFHRTDT---NKQVFMIDTAENPRCCTTEFDLTDKSINPVGGFVNYGRVQGDFI 322
Query: 534 MIKGCCMGPKKRVITLRKMKL 554
MIKG C GPK+R + +R L
Sbjct: 323 MIKGTCPGPKRRPVVMRNALL 343
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R++ + L +QKKA +MEIQ+NGG+ VA+K+ +A +E+PI + VF+ ID
Sbjct: 158 RIVAHTQPALTPLKQKKADIMEIQVNGGANVAEKVDYAYALMEKPISIKDVFSVGAQIDT 217
Query: 604 IGVTKGKGFKECV 616
I +T+G+GF+ V
Sbjct: 218 ISITRGRGFEGVV 230
>gi|3642669|gb|AAC36524.1| ribosomal protein L3, partial [Mus musculus]
Length = 117
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/116 (78%), Positives = 105/116 (90%)
Query: 323 IQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPR 382
IQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KGVTSRWHTKKLPR
Sbjct: 1 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 60
Query: 383 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
KTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++G G KDGK+
Sbjct: 61 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKL 116
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 52/60 (86%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+
Sbjct: 39 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 98
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 42/48 (87%)
Query: 256 IQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
IQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+KG
Sbjct: 1 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 48
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 567 IQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
IQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG+K
Sbjct: 1 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 47
>gi|358339475|dbj|GAA47534.1| 60S ribosomal protein L3 [Clonorchis sinensis]
Length = 276
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/118 (78%), Positives = 105/118 (88%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +KKAH+MEIQ+NGG+V+ K+ W RQH E+ IP+ VF+QDEMID IGVTKGKGFKGVT
Sbjct: 111 KSKKKAHIMEIQVNGGTVSQKVDWIRQHFEKQIPIVNVFSQDEMIDVIGVTKGKGFKGVT 170
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
SRWHTKKLPRKTHKGLRKVACIG+WHP+RV TVARAGQKGY HRTELNKKIYR+G G
Sbjct: 171 SRWHTKKLPRKTHKGLRKVACIGSWHPARVGSTVARAGQKGYFHRTELNKKIYRIGLG 228
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 99/116 (85%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGF PKKRS R RGK K FPKD + P HLTAF+GYKAGMTHIVRE DRPGSK++K+EIV
Sbjct: 1 MGFTPKKRSRRIRGKCKAFPKDRRSLPPHLTAFLGYKAGMTHIVREVDRPGSKVHKREIV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKA 166
E VTILE PPMVIVG++GY T GLR+FKTVWAEHL++ECRRRFYK+W KS++KA
Sbjct: 61 EPVTILECPPMVIVGLVGYAPTARGLRTFKTVWAEHLTEECRRRFYKDWCKSKKKA 116
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 50/60 (83%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRKVACIG+WHP+RV TVARAGQKGY HRTEL
Sbjct: 159 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGSWHPARVGSTVARAGQKGYFHRTEL 218
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
K +KKAH+MEIQ+NGG+V+ K+ W RQH E+ IP+ VF+QDEMID IGVTKGKGFKG
Sbjct: 111 KSKKKAHIMEIQVNGGTVSQKVDWIRQHFEKQIPIVNVFSQDEMIDVIGVTKGKGFKG 168
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 48/57 (84%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
K +KKAH+MEIQ+NGG+V+ K+ W RQH E+ IP+ VF+QDEMID IGVTKGKGFK
Sbjct: 111 KSKKKAHIMEIQVNGGTVSQKVDWIRQHFEKQIPIVNVFSQDEMIDVIGVTKGKGFK 167
>gi|378756821|gb|EHY66845.1| ribosomal protein L3 [Nematocida sp. 1 ERTm2]
Length = 394
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 164/264 (62%), Gaps = 39/264 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ R R ++ +P+DD T+ VHLT + YKAGMTH++R +
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAERIRPRIPSYPQDDATQKVHLTTYFAYKAGMTHVLRVGE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GSK+NKKEI++ VTILETP V+ GV+GY +TP GL + KTV AEH+ + +RR+YK
Sbjct: 62 REGSKLNKKEIIDPVTILETPKCVVFGVVGYKKTPRGLVNVKTVLAEHIDESVKRRYYKR 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+Y+S++ A + K+++ + I Q+++ + VIRV+ H+Q
Sbjct: 122 YYRSKKTALSNYPLKYKNGV----IEQEIQAIRDNADVIRVLIHSQAP------------ 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
++K+L KKAH+ME QLNGG++ +KI +A H E+ I
Sbjct: 166 ---------------------KIKILN--TKKAHIMESQLNGGTIQEKIDFALAHFEKEI 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFK 302
F+++EMID IGVTKGKGF+
Sbjct: 203 SSQDCFSREEMIDIIGVTKGKGFE 226
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 89/118 (75%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAH+ME QLNGG++ +KI +A H E+ I F+++EMID IGVTKGKGF+ T RW
Sbjct: 173 KKAHIMESQLNGGTIQEKIDFALAHFEKEISSQDCFSREEMIDIIGVTKGKGFESCTKRW 232
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433
T LPRKT+KGLRKVACIGAWHPSRV ++V RAGQ G+HHR NK++Y MG G T
Sbjct: 233 GTTILPRKTNKGLRKVACIGAWHPSRVMYSVPRAGQTGFHHRVMQNKRVYLMGDGQST 290
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 101/158 (63%), Gaps = 12/158 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G S T RW T LPRKT+KGLRKVACIGAWHPSRV ++V RAGQ G+HHR +
Sbjct: 218 GVTKGKGFESCTKRWGTTILPRKTNKGLRKVACIGAWHPSRVMYSVPRAGQTGFHHR--V 275
Query: 490 FLCKKKYLSMVIKNNASTD-----YDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K+ YL + + STD YDLTEK+I PMGGF YG VNN+F+M+KG +GP+K
Sbjct: 276 MQNKRVYL---MGDGQSTDACKTEYDLTEKTINPMGGFTGYGHVNNEFIMVKGSVVGPRK 332
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RV+ LR K++ ++ K + I + + KI R
Sbjct: 333 RVLVLR--KIVGRKYKSGNAESINIKFIDTSSKIGSGR 368
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 610
K+K+L KKAH+ME QLNGG++ +KI +A H E+ I F+++EMID IGVTKGK
Sbjct: 166 KIKILN--TKKAHIMESQLNGGTIQEKIDFALAHFEKEISSQDCFSREEMIDIIGVTKGK 223
Query: 611 GFKEC 615
GF+ C
Sbjct: 224 GFESC 228
>gi|414588491|tpg|DAA39062.1| TPA: hypothetical protein ZEAMMB73_842297 [Zea mays]
Length = 347
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 135/202 (66%), Gaps = 35/202 (17%)
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
++++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKNW K
Sbjct: 23 TELHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKNWCK 82
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
S++KAFTK + K+++ GKK I L KM KY VIRVIAHTQ +
Sbjct: 83 SKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHTQIR--------------- 127
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV
Sbjct: 128 ------------------KMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVD 167
Query: 282 QVFAQDEMIDCIGVTKGKGFKG 303
VF +DEMID IGVTKGKG++G
Sbjct: 168 AVFQKDEMIDIIGVTKGKGYEG 189
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 103/124 (83%), Gaps = 1/124 (0%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG++GV +
Sbjct: 133 KQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKGYEGVVT 192
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-AGIH 432
RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G AG
Sbjct: 193 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKAGQE 252
Query: 433 TKDG 436
T D
Sbjct: 253 THDA 256
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 180 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 238
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 239 -MNKKVYKIGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRV 297
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 298 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 331
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTK
Sbjct: 126 IRKMKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTK 183
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 184 GKGYEGVV 191
>gi|26245428|gb|AAN77574.1| ribosomal protein L3 [Fundulus heteroclitus]
Length = 154
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/190 (55%), Positives = 132/190 (69%), Gaps = 36/190 (18%)
Query: 112 AVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKAS 171
AVTI+ETPPMV+VGV+GYV TP GLRSFKT+++EH+S EC+RRFY+NWYKS++KAFTK
Sbjct: 1 AVTIVETPPMVVVGVVGYVSTPRGLRSFKTIFSEHMSDECKRRFYRNWYKSKKKAFTKYC 60
Query: 172 KKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQ 231
KKWQD+ GKK + +D M KYC+V+RVIAHT
Sbjct: 61 KKWQDEEGKKQLEKDFSAMKKYCQVVRVIAHT---------------------------- 92
Query: 232 PDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMID 291
QM+LL RQKK+HLME+QLNGG+++DK+ WAR+ LEQ + V VF+QDEMID
Sbjct: 93 --------QMRLLPLRQKKSHLMEVQLNGGTISDKVDWAREKLEQQVAVSAVFSQDEMID 144
Query: 292 CIGVTKGKGF 301
IGVTKG G+
Sbjct: 145 VIGVTKGHGW 154
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKK+HLME+QLNGG+++DK+ WAR+ LE
Sbjct: 71 QLEKDFSAMKKYCQVV--RVIAHTQMRLLPLRQKKSHLMEVQLNGGTISDKVDWAREKLE 128
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGF 612
Q + V VF+QDEMID IGVTKG G+
Sbjct: 129 QQVAVSAVFSQDEMIDVIGVTKGHGW 154
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKK+HLME+QLNGG+++DK+ WAR+ LEQ + V VF+QDEMID IGVTKG G
Sbjct: 94 MRLLPLRQKKSHLMEVQLNGGTISDKVDWAREKLEQQVAVSAVFSQDEMIDVIGVTKGHG 153
Query: 368 F 368
+
Sbjct: 154 W 154
>gi|396082145|gb|AFN83757.1| 60S ribosomal protein L3 [Encephalitozoon romaleae SJ-2008]
Length = 383
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/408 (32%), Positives = 196/408 (48%), Gaps = 113/408 (27%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKFSAPRHGS+ F P+KRS R FP DD ++PVHLT F+GYKAGMTH++R
Sbjct: 2 SCRKFSAPRHGSLQFCPRKRSKTIRPSAGAFPADDSSQPVHLTGFMGYKAGMTHVIRTKI 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +E+++AVT+LE PPMV+ GV+GY T GLR V A ++S RR +
Sbjct: 62 QAAKNKQLSREVMDAVTVLEAPPMVVYGVVGYERTVTGLRRLPIVLAPYVSDGVLRRMFG 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
N + R+ SK++ + + ++ K + +RV+ TQ
Sbjct: 122 NKHVEREN-----SKRF---CASEETESRISEIKKKAECVRVLVQTQP------------ 161
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKR-QKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
L+KK KKAH+ EIQ+NGGS+++K+ W LE+
Sbjct: 162 ------------------------GLIKKLGLKKAHIAEIQVNGGSISEKVEWCLDMLEK 197
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAW 336
I +G+VF ++E ID IGVTKGKGF+G + + K+ +K
Sbjct: 198 EIHIGEVFKENENIDVIGVTKGKGFQGTVKRFGVRKQPRK-------------------- 237
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
+R+ + + + CIG WH
Sbjct: 238 SRKGIRK-------------VACIGA------------WH-------------------- 252
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRW 444
PSRV ++VARAGQ G+H RTE NK++Y +G G + + +T ++
Sbjct: 253 --PSRVMYSVARAGQMGFHRRTEKNKRVYMVGNGNSSIRTEFDLTEKF 298
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 91/124 (73%), Gaps = 6/124 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV ++VARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSVARAGQMGFHRRTE- 273
Query: 490 FLCKKKYLSMVIKNNAS--TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
K K + MV N+S T++DLTEK I+PMGGFPHYGEV NDF+M+KG +GP+KRV+
Sbjct: 274 ---KNKRVYMVGNGNSSIRTEFDLTEKFISPMGGFPHYGEVKNDFIMVKGAVVGPRKRVV 330
Query: 548 TLRK 551
TLRK
Sbjct: 331 TLRK 334
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKR-QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RV+ + L+KK KKAH+ EIQ+NGGS+++K+ W LE+ I +G+VF ++E ID
Sbjct: 154 RVLVQTQPGLIKKLGLKKAHIAEIQVNGGSISEKVEWCLDMLEKEIHIGEVFKENENIDV 213
Query: 604 IGVTKGKGFKECV 616
IGVTKGKGF+ V
Sbjct: 214 IGVTKGKGFQGTV 226
>gi|387594270|gb|EIJ89294.1| 60s ribosomal protein l3 [Nematocida parisii ERTm3]
gi|387595016|gb|EIJ92643.1| 60s ribosomal protein l3 [Nematocida parisii ERTm1]
Length = 393
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/264 (41%), Positives = 161/264 (60%), Gaps = 39/264 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ R R ++ +P+DD T+ VHLT + YKAGMTH++R +
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAERIRPRIPSYPQDDETQKVHLTTYFAYKAGMTHVLRVGE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GSK+NK+EI++ VTILETP V+ G++GY +TP GL + KTV AEH+ + +RR+YK
Sbjct: 62 REGSKLNKREIIDPVTILETPKCVVFGLVGYKKTPRGLVNVKTVLAEHIDESVKRRYYKR 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+Y+S++ A + K+++ + I Q+++ + VIRV+ H+Q
Sbjct: 122 YYRSKKTALSNYPLKYKNGV----IEQEIQAIRDNADVIRVLIHSQAP------------ 165
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K+ KKAH+ME QLNGGS+ DKI +A + E+ I
Sbjct: 166 -----------------------KIKALNTKKAHIMESQLNGGSIQDKIDFALSNFEKEI 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFK 302
F+++EMID IGVTKGKGF+
Sbjct: 203 SAPDCFSKEEMIDIIGVTKGKGFQ 226
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 93/131 (70%)
Query: 307 AMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 366
A K+ KKAH+ME QLNGGS+ DKI +A + E+ I F+++EMID IGVTKGK
Sbjct: 164 APKIKALNTKKAHIMESQLNGGSIQDKIDFALSNFEKEISAPDCFSKEEMIDIIGVTKGK 223
Query: 367 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
GF+ T RW T LPRKT+KGLRKVACIGAWHPSRV ++V RAGQ G+HHR NK++Y
Sbjct: 224 GFQSCTKRWGTTILPRKTNKGLRKVACIGAWHPSRVMYSVPRAGQTGFHHRVMQNKRVYL 283
Query: 427 MGAGIHTKDGK 437
+G G T K
Sbjct: 284 VGDGQSTDSCK 294
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 10/145 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G S T RW T LPRKT+KGLRKVACIGAWHPSRV ++V RAGQ G+HHR +
Sbjct: 218 GVTKGKGFQSCTKRWGTTILPRKTNKGLRKVACIGAWHPSRVMYSVPRAGQTGFHHR--V 275
Query: 490 FLCKKKYLSMVIKNNASTD-----YDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K+ YL + + STD YDLTEK+I PMGGF YG VNN+F+M+KG +GP+K
Sbjct: 276 MQNKRVYL---VGDGQSTDSCKTEYDLTEKTINPMGGFAGYGYVNNEFIMVKGSVVGPRK 332
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQL 569
RV+ LRK+ K + A + I+
Sbjct: 333 RVLVLRKIVGRKFKSGNAETINIKF 357
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKEC 615
KKAH+ME QLNGGS+ DKI +A + E+ I F+++EMID IGVTKGKGF+ C
Sbjct: 173 KKAHIMESQLNGGSIQDKIDFALSNFEKEISAPDCFSKEEMIDIIGVTKGKGFQSC 228
>gi|396081112|gb|AFN82731.1| 60S ribosomal protein L3 [Encephalitozoon romaleae SJ-2008]
Length = 383
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 133/408 (32%), Positives = 196/408 (48%), Gaps = 113/408 (27%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKFSAPRHGS+ F P+KRS R FP DD ++PVHLT F+GYKAGMTH++R
Sbjct: 2 SCRKFSAPRHGSLQFCPRKRSKTIRPSPGAFPADDSSQPVHLTGFMGYKAGMTHVIRTKI 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +E+++AVT+LE PPMV+ GV+GY T GLR V A ++S RR +
Sbjct: 62 QAAKNKQLSREVMDAVTVLEAPPMVVYGVVGYERTVTGLRRLPIVLAPYVSDGVLRRMFG 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
N + R+ SK++ + + ++ K + +RV+ TQ
Sbjct: 122 NKHVEREN-----SKRF---CASEETESRISEIKKKAECVRVLVQTQP------------ 161
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKR-QKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
L+KK KKAH+ EIQ+NGGS+++K+ W LE+
Sbjct: 162 ------------------------GLIKKLGLKKAHIAEIQVNGGSISEKVEWCLDMLEK 197
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAW 336
I +G+VF ++E ID IGVTKGKGF+G + + K+ +K
Sbjct: 198 EIHIGEVFKENENIDVIGVTKGKGFQGTVKRFGVRKQPRK-------------------- 237
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
+R+ + + + CIG WH
Sbjct: 238 SRKGIRK-------------VACIGA------------WH-------------------- 252
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRW 444
PSRV ++VARAGQ G+H RTE NK++Y +G G + + +T ++
Sbjct: 253 --PSRVMYSVARAGQMGFHRRTEKNKRVYMVGNGNSSIRTEFDLTEKF 298
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 91/124 (73%), Gaps = 6/124 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV ++VARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSVARAGQMGFHRRTE- 273
Query: 490 FLCKKKYLSMVIKNNAS--TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
K K + MV N+S T++DLTEK I+PMGGFPHYGEV NDF+M+KG +GP+KRV+
Sbjct: 274 ---KNKRVYMVGNGNSSIRTEFDLTEKFISPMGGFPHYGEVKNDFIMVKGAVVGPRKRVV 330
Query: 548 TLRK 551
TLRK
Sbjct: 331 TLRK 334
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKR-QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RV+ + L+KK KKAH+ EIQ+NGGS+++K+ W LE+ I +G+VF ++E ID
Sbjct: 154 RVLVQTQPGLIKKLGLKKAHIAEIQVNGGSISEKVEWCLDMLEKEIHIGEVFKENENIDV 213
Query: 604 IGVTKGKGFKECV 616
IGVTKGKGF+ V
Sbjct: 214 IGVTKGKGFQGTV 226
>gi|357443615|ref|XP_003592085.1| L3 Ribosomal protein [Medicago truncatula]
gi|355481133|gb|AES62336.1| L3 Ribosomal protein [Medicago truncatula]
Length = 337
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 144/214 (67%), Gaps = 35/214 (16%)
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTHIVRE ++PGSK++KKE E VTI+ETPPMV+VGV+GYV+TP GLR+ TVW +HLS+
Sbjct: 1 MTHIVREVEKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSE 60
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
E +RRFYKNW KS++KAF+K SK+++ GKK I L K+ KY VIRV+AHTQ ++
Sbjct: 61 EIKRRFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRK-- 118
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
MK LK QKKAH+MEIQ+NGG++A K+ +
Sbjct: 119 -------------------------------MKGLK--QKKAHIMEIQVNGGTIAQKVDF 145
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
A E+ +P+ VF +DEMID IGVTKGKG++G
Sbjct: 146 AYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEG 179
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 102/127 (80%), Gaps = 1/127 (0%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAH+MEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTKGKG++GV +
Sbjct: 123 KQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVT 182
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-AGIH 432
RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++G G
Sbjct: 183 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKVGEE 242
Query: 433 TKDGKVS 439
T D +
Sbjct: 243 THDAQTE 249
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/156 (58%), Positives = 108/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 170 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 228
Query: 490 FLCKKKY-LSMVIKN--NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y L V + +A T++D TEK ITPMGGFPHYG V DFLMIKG C+GPKKRV
Sbjct: 229 -LNKKIYKLGKVGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDFLMIKGGCVGPKKRV 287
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
ITLR+ LLK+ + A L +I+L + K R
Sbjct: 288 ITLRQ-SLLKQTSRLA-LEDIKLKFIDTSSKFGHGR 321
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 116 IRKMKGLK--QKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTK 173
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 174 GKGYEGVV 181
>gi|78190797|gb|ABB29720.1| ribosomal protein 3 large subunit [Monosiga brevicollis]
Length = 332
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/131 (68%), Positives = 109/131 (83%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK L QKKAH+MEIQ+NGGS+ +K+ +A+ LE+ +P+ VF+Q+E ID IGVTKG G
Sbjct: 119 MKKLNLGQKKAHVMEIQINGGSIQEKVDFAKSLLEKEVPIKDVFSQNEHIDIIGVTKGHG 178
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F+GVT RW TKKLPRKTHKGLRKVACIGAWHP+ V + V RAGQ+GYHHRTE+NKKIYR+
Sbjct: 179 FEGVTHRWGTKKLPRKTHKGLRKVACIGAWHPANVTYAVPRAGQRGYHHRTEMNKKIYRI 238
Query: 428 GAGIHTKDGKV 438
GAG H KDGK+
Sbjct: 239 GAGYHEKDGKL 249
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 132/217 (60%), Gaps = 36/217 (16%)
Query: 87 KAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEH 146
KAGMTHIVR+ DR GS +KKE+VEAVT++ETPP+V+VGV+GY TP GLR TVWA H
Sbjct: 1 KAGMTHIVRDLDRTGSLAHKKEVVEAVTVVETPPIVVVGVVGYTSTPRGLRQLTTVWATH 60
Query: 147 LSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQ 206
+++ RR YK++ S++ AF K K G++ DL +M KYC VIRVI HT
Sbjct: 61 MAEGFIRRCYKHFAASKKAAFRKYFSKRNTPEGQQQFDDDLARMVKYCSVIRVIVHT--- 117
Query: 207 QQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADK 266
QMK L QKKAH+MEIQ+NGGS+ +K
Sbjct: 118 ---------------------------------QMKKLNLGQKKAHVMEIQINGGSIQEK 144
Query: 267 IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +A+ LE+ +P+ VF+Q+E ID IGVTKG GF+G
Sbjct: 145 VDFAKSLLEKEVPIKDVFSQNEHIDIIGVTKGHGFEG 181
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 91/134 (67%), Gaps = 11/134 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT RW TKKLPRKTHKGLRKVACIGAWHP+ V + V RAGQ+GYHHRTE
Sbjct: 172 GVTKGHGFEGVTHRWGTKKLPRKTHKGLRKVACIGAWHPANVTYAVPRAGQRGYHHRTE- 230
Query: 490 FLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
+ KK Y ++ NA + D TEKSI PMGGFPHYG V DFL+IKGC +
Sbjct: 231 -MNKKIYRIGAGYHEKDGKLVTANAVCEADPTEKSINPMGGFPHYGLVKEDFLIIKGCTV 289
Query: 541 GPKKRVITLRKMKL 554
G KKRV+TLRK L
Sbjct: 290 GTKKRVLTLRKSIL 303
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 534 MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 593
M+K C + RVI +MK L QKKAH+MEIQ+NGGS+ +K+ +A+ LE+ +P+
Sbjct: 104 MVKYCSV---IRVIVHTQMKKLNLGQKKAHVMEIQINGGSIQEKVDFAKSLLEKEVPIKD 160
Query: 594 VFAQDEMIDCIGVTKGKGFKECVH 617
VF+Q+E ID IGVTKG GF+ H
Sbjct: 161 VFSQNEHIDIIGVTKGHGFEGVTH 184
>gi|401825791|ref|XP_003886990.1| 60S ribosomal protein L3 [Encephalitozoon hellem ATCC 50504]
gi|392998147|gb|AFM98009.1| 60S ribosomal protein L3 [Encephalitozoon hellem ATCC 50504]
Length = 383
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 197/410 (48%), Gaps = 117/410 (28%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF+APRHGS+ F P+KRS FP DD ++PVHLT F+G KAGMTH++R
Sbjct: 2 SCRKFNAPRHGSLQFCPRKRSNTITPSAGAFPADDSSQPVHLTGFMGDKAGMTHVIRTKT 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +E+++A+TILE PPMV+ G++GY T GLR V A ++S RR +
Sbjct: 62 QVAKNKQLSREVMDALTILEAPPMVVYGIVGYERTVTGLRRLPIVLASYVSDGVLRRMFG 121
Query: 158 NWY--KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQ 215
N Y K K F AS+ + ++ ++ K + +RV+
Sbjct: 122 NNYVEKGNSKGFC-ASEDSESRIS---------EIKKRAECVRVLV-------------- 157
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQ-KKAHLMEIQLNGGSVADKIAWARQHL 274
+TQP L+KK KKAH+ EIQ+NGGS+++K+ WA L
Sbjct: 158 -------------QTQPG---------LIKKLALKKAHIAEIQVNGGSISEKVDWALNML 195
Query: 275 EQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKI 334
E+ + VG VF ++E ID IGVTKGKGF+G + + K+ +K
Sbjct: 196 EKEVHVGDVFGENENIDVIGVTKGKGFQGTVKRFGVRKQPRK------------------ 237
Query: 335 AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACI 394
+R+ + + + CIG WH
Sbjct: 238 --SRKGIRK-------------VACIGA------------WH------------------ 252
Query: 395 GAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRW 444
PSRV ++VARAGQ G+H RTE NK++Y +G G + + +T ++
Sbjct: 253 ----PSRVMYSVARAGQMGFHRRTEKNKRVYMVGNGSSSIRTEFDLTEKF 298
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 94/130 (72%), Gaps = 6/130 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV ++VARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSVARAGQMGFHRRTE- 273
Query: 490 FLCKKKYLSMVIKNNAS--TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
K K + MV ++S T++DLTEK I+PMGGFPHYGEV NDF+M+KG +GP+KRV+
Sbjct: 274 ---KNKRVYMVGNGSSSIRTEFDLTEKFISPMGGFPHYGEVKNDFIMVKGAVVGPRKRVV 330
Query: 548 TLRKMKLLKK 557
TLRK ++K
Sbjct: 331 TLRKSLSMQK 340
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKRQ-KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RV+ + L+KK KKAH+ EIQ+NGGS+++K+ WA LE+ + VG VF ++E ID
Sbjct: 154 RVLVQTQPGLIKKLALKKAHIAEIQVNGGSISEKVDWALNMLEKEVHVGDVFGENENIDV 213
Query: 604 IGVTKGKGFKECV 616
IGVTKGKGF+ V
Sbjct: 214 IGVTKGKGFQGTV 226
>gi|167377647|ref|XP_001734483.1| 60S ribosomal protein L3 [Entamoeba dispar SAW760]
gi|165904006|gb|EDR29379.1| 60S ribosomal protein L3, putative [Entamoeba dispar SAW760]
Length = 381
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 175/368 (47%), Gaps = 103/368 (27%)
Query: 63 RGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMV 122
+ V FPKD+ + HLT F+G+KAGMTH++RE R +K+ K ++E VTI+ETPPMV
Sbjct: 5 KATVSAFPKDNAAEKPHLTGFLGFKAGMTHVIREVKRTNTKLPKDGVLEPVTIIETPPMV 64
Query: 123 IVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKT 182
+ G +GY +T GL+ V+AEH++ E +RR+ K WYK+ + F ++K+ D K
Sbjct: 65 VAGFVGYKKTTTGLKPITAVFAEHIADEFKRRYTKKWYKNTKNQFAVHTEKYNDVKAKSK 124
Query: 183 IAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMK 242
+ +R + C V+RVIAHT QM
Sbjct: 125 RERQIRLIKNRCDVVRVIAHT------------------------------------QMA 148
Query: 243 LLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
L+ +QKKA +MEIQ+NGGS+A+K+ +A LE+ I V VF DE ID VTKG G+
Sbjct: 149 LVPLKQKKAEVMEIQINGGSIAEKVDFAVSLLEKQISVNSVFGTDECIDVCSVTKGHGYN 208
Query: 303 GEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGV 362
G ++K+ + +HL + G + C+G
Sbjct: 209 G------VIKR----------------------FGVRHLPRKTHRGL-----RKVACVGA 235
Query: 363 TKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNK 422
WH ++ +W +R AGQ G+ RTE+NK
Sbjct: 236 ------------WHPARV---------------SWTVAR-------AGQMGFFKRTEVNK 261
Query: 423 KIYRMGAG 430
KIYR+G G
Sbjct: 262 KIYRLGCG 269
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 86/117 (73%), Gaps = 3/117 (2%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V R+ + LPRKTH+GLRKVAC+GAWHP+RV +TVARAGQ G+ RTE + KK
Sbjct: 206 GYNGVIKRFGVRHLPRKTHRGLRKVACVGAWHPARVSWTVARAGQMGFFKRTE--VNKKI 263
Query: 496 Y-LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y L NA T++D+TEK ITPMGGFPHYG V NDFLMIKG G ++RVI+LRK
Sbjct: 264 YRLGCGDLKNAKTEFDITEKGITPMGGFPHYGVVKNDFLMIKGTVAGIRRRVISLRK 320
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M L+ +QKKA +MEIQ+NGGS+A+K+ +A LE+ I V VF DE ID
Sbjct: 140 RVIAHTQMALVPLKQKKAEVMEIQINGGSIAEKVDFAVSLLEKQISVNSVFGTDECIDVC 199
Query: 605 GVTKGKGFKECV 616
VTKG G+ +
Sbjct: 200 SVTKGHGYNGVI 211
>gi|347970124|ref|XP_003436525.1| AGAP003556-PB [Anopheles gambiae str. PEST]
gi|333468789|gb|EGK97067.1| AGAP003556-PB [Anopheles gambiae str. PEST]
Length = 123
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 98/108 (90%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
M FYPKKR++RH+G+VK FPKDD +KPVHLTAF+ YKAGMTHIVREADRPGSKINKKE+V
Sbjct: 1 MAFYPKKRASRHQGRVKAFPKDDASKPVHLTAFLAYKAGMTHIVREADRPGSKINKKEVV 60
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
EAVTILETPP+V+VG +GY+ETP G R+ VWA+HLS+ECRRRFYKN
Sbjct: 61 EAVTILETPPLVVVGAVGYIETPFGPRALCNVWAQHLSEECRRRFYKN 108
>gi|301791988|ref|XP_002930962.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L3-like,
partial [Ailuropoda melanoleuca]
Length = 355
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/161 (59%), Positives = 119/161 (73%), Gaps = 4/161 (2%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
+ SHRKFS PRHGS+GF P+K S+ H G+ FPKDD +KP+HLTAF+GYKAGMTHIV E
Sbjct: 4 RISHRKFSIPRHGSLGFLPQKCSSWHHGRXTSFPKDDSSKPIHLTAFLGYKAGMTHIVXE 63
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
RPGSK+ KKEIVE VTI+E P MV VG +GY ET GL + KT++AEH+ +C+R FY
Sbjct: 64 VSRPGSKVKKKEIVEDVTIVEAPSMV-VGTMGYEETIQGLCTLKTIFAEHIHDKCKRHFY 122
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVI 197
KNW KS+ KAF K KWQD GK+ + +D M +Y ++I
Sbjct: 123 KNWGKSK-KAFNKYC-KWQDNDGKQQLEKDFNSM-RYGQII 160
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 77/105 (73%), Gaps = 4/105 (3%)
Query: 337 ARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVAC 393
+Q LE+ GQ+ DEMI I VTKGKG+K VTS WHTKKLP KTH+GL KV C
Sbjct: 143 GKQQLEKDFNSMRYGQII-HDEMIHVISVTKGKGYKEVTSHWHTKKLPCKTHQGLCKVGC 201
Query: 394 IGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
IGAWHP++V F++A AGQKGYHH TE+NKKIY++G KDGK+
Sbjct: 202 IGAWHPAQVAFSMAWAGQKGYHHCTEINKKIYKIGQSYLIKDGKL 246
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 87/141 (61%), Gaps = 26/141 (18%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE----LFL 491
G VTS WHTKKLP KTH+GL KV CIGAWHP++V F++A AGQKGYHH TE ++
Sbjct: 175 GYKEVTSHWHTKKLPCKTHQGLCKVGCIGAWHPAQVAFSMAWAGQKGYHHCTEINKKIYK 234
Query: 492 CKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
+ YL +IKNNAS DYDLT + NDF+M KGC + KK+V+T
Sbjct: 235 IGQSYLIKDGKLIKNNASADYDLT---------------MTNDFVMHKGCVI-TKKQVLT 278
Query: 549 LRKMKLLKKRQKKAHLMEIQL 569
L K+ L+ Q K +EI L
Sbjct: 279 LHKLLLV---QIKRQALEIDL 296
>gi|238601436|ref|XP_002395411.1| hypothetical protein MPER_04539 [Moniliophthora perniciosa FA553]
gi|215466097|gb|EEB96341.1| hypothetical protein MPER_04539 [Moniliophthora perniciosa FA553]
Length = 219
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/115 (75%), Positives = 98/115 (85%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAHLMEIQ+NGGS+ADK+ +A+ E+P V VF QDE ID I VTKG GF+GVT RW
Sbjct: 6 KKAHLMEIQVNGGSIADKVEYAQNLFEKPFEVSSVFEQDENIDVIAVTKGHGFEGVTHRW 65
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTELNKKIYR+G+G
Sbjct: 66 GTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQSGYHHRTELNKKIYRIGSG 120
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 98/130 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTHKGLRKVACIGAWHPS+V F+VARAGQ GYHHRTEL + S
Sbjct: 61 VTHRWGTKKLPRKTHKGLRKVACIGAWHPSKVMFSVARAGQSGYHHRTELNKKIYRIGSG 120
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NAST++D+++K ITPMGGFPHYG V NDFLM+KG G KKRVIT+RK ++ +
Sbjct: 121 SDEGNASTEHDISKKPITPMGGFPHYGIVKNDFLMLKGSIPGTKKRVITIRKSLMVHTSR 180
Query: 560 KKAHLMEIQL 569
+ ++++
Sbjct: 181 RDLEKVDLKF 190
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 42/58 (72%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
KKAHLMEIQ+NGGS+ADK+ +A+ E+P V VF QDE ID I VTKG GF+ H
Sbjct: 6 KKAHLMEIQVNGGSIADKVEYAQNLFEKPFEVSSVFEQDENIDVIAVTKGHGFEGVTH 63
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
KKAHLMEIQ+NGGS+ADK+ +A+ E+P V VF QDE ID I VTKG GF+G
Sbjct: 6 KKAHLMEIQVNGGSIADKVEYAQNLFEKPFEVSSVFEQDENIDVIAVTKGHGFEG 60
>gi|449330139|gb|AGE96402.1| 60S ribosomal protein l3 [Encephalitozoon cuniculi]
Length = 383
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 190/394 (48%), Gaps = 113/394 (28%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF+APRHGS+ F P+KRS R FP DD ++PVHLT F+ YKAGMTH+VR
Sbjct: 2 SCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKT 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +EI++AVT+LE PPMV+ G++GY +T GLR V A ++S RR +
Sbjct: 62 QVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFG 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
N Y ASK+ + K ++ + +M K +++H
Sbjct: 122 NRY---------ASKESAGQFCKGSVCESRVEMIK---------------------ERAH 151
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQ-KKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+Q TQP L+K KKAH+ EIQ+NGGS+++K+ WA LE+
Sbjct: 152 CVRVLVQ-----TQPT---------LIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEK 197
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAW 336
I +G+VF +E ID IGVTKGKGF+G + + K+ +K
Sbjct: 198 EIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRK-------------------- 237
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
+R+ + + + CIG WH ++
Sbjct: 238 SRKGIRK-------------VACIGA------------WHPSRV---------------- 256
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
+++ARAGQ G+H RTE NK++Y +G G
Sbjct: 257 ------MYSIARAGQMGFHRRTEKNKRVYMIGNG 284
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 92/128 (71%), Gaps = 2/128 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV +++ARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEK 274
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
K+ Y+ +N T++DLTEK I+PMGGFPHYGEV NDF+M+KG +G +KRV+TL
Sbjct: 275 --NKRVYMIGNGSSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTL 332
Query: 550 RKMKLLKK 557
RK LL++
Sbjct: 333 RKSLLLQR 340
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+ EIQ+NGGS+++K+ WA LE+ I +G+VF +E ID IGVTKGKGF+ V
Sbjct: 170 KKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTV 226
>gi|19173079|ref|NP_597630.1| 60S ribosomal protein L3 [Encephalitozoon cuniculi GB-M1]
gi|85014317|ref|XP_955654.1| 60S ribosomal protein L3 [Encephalitozoon cuniculi GB-M1]
gi|51701710|sp|Q8SQI3.1|RL3_ENCCU RecName: Full=60S ribosomal protein L3
gi|19168746|emb|CAD26265.1| 60S RIBOSOMAL PROTEIN L3 [Encephalitozoon cuniculi GB-M1]
gi|19171348|emb|CAD27073.1| 60S RIBOSOMAL PROTEIN L3 [Encephalitozoon cuniculi GB-M1]
Length = 383
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 190/394 (48%), Gaps = 113/394 (28%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF+APRHGS+ F P+KRS R FP DD ++PVHLT F+ YKAGMTH+VR
Sbjct: 2 SCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKT 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +EI++AVT+LE PPMV+ G++GY +T GLR V A ++S RR +
Sbjct: 62 QVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFG 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
N Y ASK+ + K ++ + +M K +++H
Sbjct: 122 NRY---------ASKESAGQFCKGSVCESRVEMIK---------------------ERAH 151
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQ-KKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+Q TQP L+K KKAH+ EIQ+NGGS+++K+ WA LE+
Sbjct: 152 CVRVLVQ-----TQPT---------LIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEK 197
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAW 336
I +G+VF +E ID IGVTKGKGF+G + + K+ +K
Sbjct: 198 EIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRK-------------------- 237
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
+R+ + + + CIG WH ++
Sbjct: 238 SRKGIRK-------------VACIGA------------WHPSRV---------------- 256
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
+++ARAGQ G+H RTE NK++Y +G G
Sbjct: 257 ------MYSIARAGQMGFHRRTEKNKRVYMIGNG 284
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 93/129 (72%), Gaps = 3/129 (2%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV +++ARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEK 274
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
K+ Y+ +N T++DLTEK I+PMGGFPHYGEV NDF+M+KG +G +KRV+TL
Sbjct: 275 --NKRVYMIGNGSSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTL 332
Query: 550 RKMKLLKKR 558
RK LL++R
Sbjct: 333 RK-SLLRQR 340
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+ EIQ+NGGS+++K+ WA LE+ I +G+VF +E ID IGVTKGKGF+ V
Sbjct: 170 KKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTV 226
>gi|303388761|ref|XP_003072614.1| 60S ribosomal protein L3 [Encephalitozoon intestinalis ATCC 50506]
gi|303301755|gb|ADM11254.1| 60S ribosomal protein L3 [Encephalitozoon intestinalis ATCC 50506]
Length = 383
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/393 (32%), Positives = 190/393 (48%), Gaps = 111/393 (28%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF+APRHGS+ F P+KRS R V FP DD ++PVHLT F+GYKAGMTH++R
Sbjct: 2 SCRKFNAPRHGSLQFCPRKRSKTIRPSVGAFPADDISQPVHLTGFMGYKAGMTHVIRTKT 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +E+++AVT++E PPMV+ G++GY T GL V A +++ RR +
Sbjct: 62 QVAKNKQLSREVMDAVTVVEAPPMVVYGIVGYERTVTGLHRLPIVTASYVNDGVLRRMFG 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
N Y ++ A Q G+ T ++ + ++ K + +RV+ TQ +
Sbjct: 122 NKYMEKEAA-------AQFCRGEVTESR-VEEIKKRAECVRVLVQTQPE----------- 162
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
+K L KKAH+ EIQLNGGS+ +K+ WA + LE+
Sbjct: 163 ----------------------MVKTLG--LKKAHIAEIQLNGGSICEKVEWALERLEKE 198
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWA 337
I + +VF ++E ID IGVTKGKGF+G + + K+ +K +
Sbjct: 199 IQIAEVFGENENIDVIGVTKGKGFQGTVKRFGVRKQPRK--------------------S 238
Query: 338 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAW 397
R+ + + + CIG WH ++
Sbjct: 239 RKGIRK-------------VACIGA------------WHPSRV----------------- 256
Query: 398 HPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
++VARAGQ G+H RTE NK++Y +G G
Sbjct: 257 -----MYSVARAGQMGFHRRTEKNKRVYMIGNG 284
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 92/125 (73%), Gaps = 8/125 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV ++VARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSVARAGQMGFHRRTE- 273
Query: 490 FLCKKKYLSMVIKNNAS---TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
K K + M I N ++ T++DLTEK+I+PMGGFPHYGEV NDF+M+KG +GP+KRV
Sbjct: 274 ---KNKRVYM-IGNGSTKIKTEFDLTEKAISPMGGFPHYGEVKNDFIMVKGAVVGPRKRV 329
Query: 547 ITLRK 551
+TLRK
Sbjct: 330 VTLRK 334
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+ EIQLNGGS+ +K+ WA + LE+ I + +VF ++E ID IGVTKGKGF+ V
Sbjct: 170 KKAHIAEIQLNGGSICEKVEWALERLEKEIQIAEVFGENENIDVIGVTKGKGFQGTV 226
>gi|376337862|gb|AFB33487.1| hypothetical protein 2_6618_01, partial [Abies alba]
gi|376337864|gb|AFB33488.1| hypothetical protein 2_6618_01, partial [Abies alba]
gi|376337866|gb|AFB33489.1| hypothetical protein 2_6618_01, partial [Abies alba]
Length = 141
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 120/207 (57%), Gaps = 68/207 (32%)
Query: 345 IPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQF 404
+P+ +F +DEMID IGVTKGKG++GV +RW +LPRKTH+GLRKVACIGAWHP+RV F
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSF 61
Query: 405 TVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIG 464
TVARAGQ GYHHRTE+NKKIY++G
Sbjct: 62 TVARAGQNGYHHRTEMNKKIYKIG------------------------------------ 85
Query: 465 AWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPH 524
+AGQ+ ++ TE D TEK ITPMGGFPH
Sbjct: 86 ------------KAGQESHNAMTEF--------------------DRTEKDITPMGGFPH 113
Query: 525 YGEVNNDFLMIKGCCMGPKKRVITLRK 551
YG V +D++MI+GCC+G KKRV+TLR+
Sbjct: 114 YGIVKDDYIMIRGCCVGTKKRVVTLRQ 140
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+P+ +F +DEMID IGVTKGKG++G
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEG 27
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 589 IPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+P+ +F +DEMID IGVTKGKG++ V
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEGVV 29
>gi|70927424|ref|XP_736100.1| ribosomal protein L3 [Plasmodium chabaudi chabaudi]
gi|56510349|emb|CAH85528.1| ribosomal protein L3, putative [Plasmodium chabaudi chabaudi]
Length = 155
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 115/160 (71%), Gaps = 6/160 (3%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR R RGK++ FPKD+ H TAF+GYK+GM+HIVRE D
Sbjct: 2 SHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDNKELAPHFTAFMGYKSGMSHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
PGSK++KKEIVEA TI+E PMV+VG++GY ETP GL+ VWA H+S E RRR+YKN
Sbjct: 62 -PGSKLHKKEIVEACTIVECAPMVVVGMVGYRETPKGLKVLTAVWANHVSDEFRRRYYKN 120
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIR 198
WYKS +KAFTK + + T + ++ KYC ++R
Sbjct: 121 WYKSDKKAFTKCL-----NIPEATKEKLYDRIEKYCTILR 155
>gi|303390711|ref|XP_003073586.1| 60S ribosomal protein L3 [Encephalitozoon intestinalis ATCC 50506]
gi|303302733|gb|ADM12226.1| 60S ribosomal protein L3 [Encephalitozoon intestinalis ATCC 50506]
Length = 383
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 189/393 (48%), Gaps = 111/393 (28%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF+APRHGS+ F P+KRS R V FP DD ++PVHLT F+GYKAGMTH++R
Sbjct: 2 SCRKFNAPRHGSLQFCPRKRSKTIRPSVGAFPADDISQPVHLTGFMGYKAGMTHVIRTKT 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +E+++AVT++E PPMV+ G++GY T GL V +++ RR +
Sbjct: 62 QVAKNKQLSREVMDAVTVVEAPPMVVYGIVGYERTVTGLHRLPIVTVSYVNDGVLRRMFG 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
N Y ++ A Q G+ T ++ + ++ K + +RV+ TQ +
Sbjct: 122 NKYMEKEAA-------AQFCRGEVTESR-VEEIKKRAECVRVLVQTQPE----------- 162
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
+K L KKAH+ EIQLNGGS+ +K+ WA + LE+
Sbjct: 163 ----------------------MVKTLG--LKKAHIAEIQLNGGSICEKVEWALERLEKE 198
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWA 337
I + +VF ++E ID IGVTKGKGF+G + + K+ +K +
Sbjct: 199 IQIAEVFGENENIDVIGVTKGKGFQGTVKRFGVRKQPRK--------------------S 238
Query: 338 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAW 397
R+ + + + CIG WH ++
Sbjct: 239 RKGIRK-------------VACIGA------------WHPSRV----------------- 256
Query: 398 HPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
++VARAGQ G+H RTE NK++Y +G G
Sbjct: 257 -----MYSVARAGQMGFHRRTEKNKRVYMIGNG 284
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 92/125 (73%), Gaps = 8/125 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV ++VARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSVARAGQMGFHRRTE- 273
Query: 490 FLCKKKYLSMVIKNNAS---TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
K K + M I N ++ T++DLTEK+I+PMGGFPHYGEV NDF+M+KG +GP+KRV
Sbjct: 274 ---KNKRVYM-IGNGSTKIKTEFDLTEKAISPMGGFPHYGEVKNDFIMVKGAVVGPRKRV 329
Query: 547 ITLRK 551
+TLRK
Sbjct: 330 VTLRK 334
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+ EIQLNGGS+ +K+ WA + LE+ I + +VF ++E ID IGVTKGKGF+ V
Sbjct: 170 KKAHIAEIQLNGGSICEKVEWALERLEKEIQIAEVFGENENIDVIGVTKGKGFQGTV 226
>gi|444706378|gb|ELW47720.1| 60S ribosomal protein L3 [Tupaia chinensis]
Length = 197
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 125/207 (60%), Gaps = 43/207 (20%)
Query: 119 PPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKL 178
PP V++G++G+VETP GLR+F+T+ AE +S EC+R FYKNW+KS+ KAFTK K WQD
Sbjct: 2 PPTVVMGIVGHVETPRGLRTFRTLLAERISDECKRFFYKNWHKSK-KAFTKYCKNWQDDN 60
Query: 179 GKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESH 238
GKK + +D M YC+VIR+IAHT
Sbjct: 61 GKKQVEKDFSSMKMYCQVIRIIAHT----------------------------------- 85
Query: 239 VQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 298
QM+LL QKKAHLMEIQ+NGG+VA+K+ W + LEQ +PV QVF QDEMID +GV KG
Sbjct: 86 -QMRLLPLCQKKAHLMEIQVNGGTVAEKLDWVLEQLEQRVPVNQVFGQDEMIDAMGVIKG 144
Query: 299 KGFKG------EMIAMKLLKKRQKKAH 319
KG++G E I +K + K H
Sbjct: 145 KGYRGTIRQALEKIDLKFIGTASKLGH 171
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+V DF +K C R+I +M+LL QKKAHLMEIQ+NGG+VA+K+ W + LE
Sbjct: 64 QVEKDFSSMKMYCQVI--RIIAHTQMRLLPLCQKKAHLMEIQVNGGTVAEKLDWVLEQLE 121
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID +GV KGKG++
Sbjct: 122 QRVPVNQVFGQDEMIDAMGVIKGKGYR 148
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL QKKAHLMEIQ+NGG+VA+K+ W + LEQ +PV QVF QDEMID +GV KGKG
Sbjct: 87 MRLLPLCQKKAHLMEIQVNGGTVAEKLDWVLEQLEQRVPVNQVFGQDEMIDAMGVIKGKG 146
Query: 368 FKG 370
++G
Sbjct: 147 YRG 149
>gi|42565416|gb|AAS20981.1| ribosomal protein L3 [Hyacinthus orientalis]
Length = 263
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++A+K+ +A E+ IPV VF +DEMID IGVTKGKG
Sbjct: 46 MKGLK--QKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKG 103
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKKIYR+
Sbjct: 104 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYRL 163
Query: 428 G 428
G
Sbjct: 164 G 164
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 105/143 (73%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 97 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 155
Query: 490 FLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y S + A T++D TEK ITPMGGFPHYG VN+D+++I GCC+GPKKRV
Sbjct: 156 -MNKKIYRLGKSGDESHQAVTEFDRTEKDITPMGGFPHYGVVNDDYILINGCCVGPKKRV 214
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
+TLR+ LLK+ + A L EI+L
Sbjct: 215 VTLRQ-SLLKQTSRLA-LEEIKL 235
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 78/138 (56%), Gaps = 35/138 (25%)
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
AFTK S K++ GKK I L KM KY VIRV+AHTQ ++
Sbjct: 4 AFTKYSNKYESDDGKKEIQTQLDKMKKYATVIRVLAHTQLRK------------------ 45
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
MK LK QKKAHLMEIQ+NGG++A+K+ +A E+ IPV VF
Sbjct: 46 ---------------MKGLK--QKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQ 88
Query: 286 QDEMIDCIGVTKGKGFKG 303
+DEMID IGVTKGKG++G
Sbjct: 89 KDEMIDIIGVTKGKGYEG 106
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
LRKMK LK QKKAHLMEIQ+NGG++A+K+ +A E+ IPV VF +DEMID IGVTK
Sbjct: 43 LRKMKGLK--QKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTK 100
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 101 GKGYEGVV 108
>gi|356871227|emb|CCC86742.1| ribosomal subunit, partial [Millerozyma miso]
Length = 150
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EM+D I VTKG GF+GVT R
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMVDAIAVTKGHGFEGVTHR 63
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ VQ+TV RAGQ GYHHRT +N KIYR+G+G
Sbjct: 64 WGTKKLPRKTHRGLRKVACIGAWHPANVQWTVPRAGQNGYHHRTSINHKIYRIGSGDDES 123
Query: 435 DG 436
+G
Sbjct: 124 NG 125
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 69/91 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ VQ+TV RAGQ GYHHRT + + S
Sbjct: 60 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVPRAGQNGYHHRTSINHKIYRIGSG 119
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNN 530
++N +T++D T+K+I PMGGF YGEV N
Sbjct: 120 DDESNGATEFDRTKKTINPMGGFVRYGEVKN 150
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 248 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EM+D I VTKG GF+G
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMVDAIAVTKGHGFEG 59
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EM+D I VTKG GF+ H
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMVDAIAVTKGHGFEGVTH 62
>gi|356871225|emb|CCC86741.1| ribosomal subunit, partial [Millerozyma farinosa]
Length = 150
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHR 63
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ VQ+TV RAGQ GYHHRT +N K+YR+G+G
Sbjct: 64 WGTKKLPRKTHRGLRKVACIGAWHPANVQWTVPRAGQNGYHHRTSINHKVYRVGSGEDES 123
Query: 435 DG 436
+G
Sbjct: 124 NG 125
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 69/91 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ VQ+TV RAGQ GYHHRT + + S
Sbjct: 60 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVPRAGQNGYHHRTSINHKVYRVGSG 119
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNN 530
++N +T++D T+K+I PMGGF YGEV N
Sbjct: 120 EDESNGATEFDRTKKTINPMGGFVRYGEVKN 150
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 248 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I VTKG GF+G
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEG 59
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I VTKG GF+ H
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTH 62
>gi|414587233|tpg|DAA37804.1| TPA: hypothetical protein ZEAMMB73_880497 [Zea mays]
Length = 137
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 106/129 (82%), Gaps = 3/129 (2%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 1 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKG 58
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 59 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 118
Query: 428 G-AGIHTKD 435
G AG T D
Sbjct: 119 GKAGQETHD 127
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 47/60 (78%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+
Sbjct: 52 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM 111
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 50/63 (79%), Gaps = 2/63 (3%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 1 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKG 58
Query: 301 FKG 303
++G
Sbjct: 59 YEG 61
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEMID IGVTKGKG
Sbjct: 1 MKGLK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVDAVFQKDEMIDIIGVTKGKG 58
Query: 612 FKECV 616
++ V
Sbjct: 59 YEGVV 63
>gi|145324164|ref|NP_001077671.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
gi|332193833|gb|AEE31954.1| 60S ribosomal protein L3-1 [Arabidopsis thaliana]
Length = 306
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 88 MKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKG 145
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+
Sbjct: 146 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 205
Query: 428 G 428
G
Sbjct: 206 G 206
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 104/143 (72%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 139 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 197
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + + A T+YD TEK +TPMGGFPHYG V +D+LMIKGCC+GPKKRV
Sbjct: 198 -LNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRV 256
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
+TLR+ LL + + A L EI+L
Sbjct: 257 VTLRQ-SLLTQTSRLA-LEEIKL 277
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 107/173 (61%), Gaps = 35/173 (20%)
Query: 131 ETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKM 190
+TP GLRS TVWA+HLS+E RRRFYKNW KS++KAFT +K++ + GKK I L KM
Sbjct: 11 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKM 70
Query: 191 AKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKK 250
KY VIRV+AHTQ + +MK LK QKK
Sbjct: 71 KKYATVIRVLAHTQIR---------------------------------KMKGLK--QKK 95
Query: 251 AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
AH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG++G
Sbjct: 96 AHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEG 148
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 85 IRKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTK 142
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 143 GKGYEGVV 150
>gi|356871217|emb|CCC86737.1| ribosomal subunit, partial [Millerozyma farinosa]
gi|356871219|emb|CCC86738.1| ribosomal subunit, partial [Millerozyma farinosa]
gi|356871221|emb|CCC86739.1| ribosomal subunit, partial [Millerozyma farinosa]
gi|356871223|emb|CCC86740.1| ribosomal subunit, partial [Millerozyma farinosa]
Length = 150
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 100/122 (81%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHR 63
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ VQ++V RAGQ GYHHRT +N K+YR+G+G
Sbjct: 64 WGTKKLPRKTHRGLRKVACIGAWHPANVQWSVPRAGQNGYHHRTSINHKVYRVGSGEDES 123
Query: 435 DG 436
+G
Sbjct: 124 NG 125
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 69/91 (75%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ VQ++V RAGQ GYHHRT + + S
Sbjct: 60 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWSVPRAGQNGYHHRTSINHKVYRVGSG 119
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNN 530
++N +T++D T+K+I PMGGF YGEV N
Sbjct: 120 EDESNGATEFDRTKKTINPMGGFVRYGEVKN 150
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 248 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I VTKG GF+G
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEG 59
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKKAHL EIQ+NGGS++DK+ WA++H E+ + V VF Q+EMID I VTKG GF+ H
Sbjct: 4 QKKAHLAEIQVNGGSISDKVDWAKEHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTH 62
>gi|255098787|gb|ACU00734.1| 60S ribosomal protein L3 [Nosema bombycis]
gi|326573816|gb|ADZ95674.1| 60S ribosomal protein L3 [Nosema bombycis]
Length = 384
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 151/268 (56%), Gaps = 48/268 (17%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVR-EA 97
S RKF+APRHGS+ F P+KRS + ++ FPKD + +HLTAFIGYKAGMTH+VR +
Sbjct: 2 SCRKFNAPRHGSLAFGPRKRSKTIKPSIRAFPKDVQEEKIHLTAFIGYKAGMTHVVRSKI 61
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRR-FY 156
+ +K KEI++AVT++ETPPMVI GV GY T GL TV A H+ + RRR F
Sbjct: 62 IQTKNKQLSKEIMDAVTLIETPPMVIYGVTGYEVTGKGLNRIATVLAPHIDESVRRREFG 121
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ-NQQQSLHQNQQ 215
K W + + K++ K+ +DL ++ K VIR++AHTQ + +LH
Sbjct: 122 KRW-----EQLSANIKEYN----KEKAEKDLEEIRKRASVIRILAHTQPTKIPALH---- 168
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
KK+H+ EIQ+NGG++ +K+ WA E
Sbjct: 169 --------------------------------LKKSHISEIQVNGGTINEKVDWALDKFE 196
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ + + +VF +E +D IGVTKGKGF+G
Sbjct: 197 KEVTIDEVFEVNENLDTIGVTKGKGFQG 224
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 86/115 (74%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KK+H+ EIQ+NGG++ +K+ WA E+ + + +VF +E +D IGVTKGKGF+GV R+
Sbjct: 170 KKSHISEIQVNGGTINEKVDWALDKFEKEVTIDEVFEVNENLDTIGVTKGKGFQGVVKRF 229
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
PRK+ KG+RKVACIGAWHPSRV TVARAGQ G+H RTE NKK+Y +G G
Sbjct: 230 GVTIQPRKSRKGIRKVACIGAWHPSRVMTTVARAGQMGFHRRTETNKKVYMIGNG 284
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ PRK+ KG+RKVACIGAWHPSRV TVARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGVVKRFGVTIQPRKSRKGIRKVACIGAWHPSRVMTTVARAGQMGFHRRTET 274
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
KK Y+ T++DLTEK ITP+GG PHYG + ND++M+KG +GP+KRV+TL
Sbjct: 275 --NKKVYMIGNGNELIKTEFDLTEKPITPLGGIPHYGSIKNDYIMVKGAVIGPRKRVVTL 332
Query: 550 RKMKLLKKRQKKAHLM 565
RK L K ++ L+
Sbjct: 333 RK-SLYKTKKASEELI 347
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KK+H+ EIQ+NGG++ +K+ WA E+ + + +VF +E +D IGVTKGKGF+ V
Sbjct: 170 KKSHISEIQVNGGTINEKVDWALDKFEKEVTIDEVFEVNENLDTIGVTKGKGFQGVV 226
>gi|309266996|ref|XP_001476854.2| PREDICTED: 60S ribosomal protein L3-like, partial [Mus musculus]
Length = 180
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 110/141 (78%), Gaps = 7/141 (4%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELF----- 490
G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYH+RTE+
Sbjct: 4 GYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEINKKIYK 63
Query: 491 LCKKKYL--SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
+C+ + +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G KKRV+T
Sbjct: 64 ICQGHLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGAKKRVLT 123
Query: 549 LRKMKLLKKRQKKAHLMEIQL 569
L K L++ +++ ++++
Sbjct: 124 LCKSLLVQTKRRALEKIDLKF 144
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 69/75 (92%)
Query: 364 KGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKK 423
KGKG+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYH+RTE+NKK
Sbjct: 1 KGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEINKK 60
Query: 424 IYRMGAGIHTKDGKV 438
IY++ G KDGK+
Sbjct: 61 IYKICQGHLIKDGKL 75
>gi|5762260|dbj|BAA83471.1| Csf-3 [Cucumis sativus]
Length = 219
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 100/121 (82%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGGS+A K +A E+ +PV VF +DEMID IGVTKGKG
Sbjct: 1 MKGLK--QKKAHLMEIQVNGGSIAQKXDYAYGFFEKQVPVEAVFQKDEMIDLIGVTKGKG 58
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y++
Sbjct: 59 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKI 118
Query: 428 G 428
G
Sbjct: 119 G 119
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 108/161 (67%), Gaps = 7/161 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 52 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 110
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + + A T++D TEK ITPMGGFPHYG V +D+LMIKG C+GPKKRV
Sbjct: 111 -MNKKVYKIGKTGQESHTAITEFDRTEKDITPMGGFPHYGIVKSDYLMIKGGCVGPKKRV 169
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
ITLR+ LLK+ + A L EI+L + K R Q
Sbjct: 170 ITLRQ-SLLKQTSRVA-LEEIKLKFIDTSSKFGHGRFQTTQ 208
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
MK LK QKKAHLMEIQ+NGGS+A K +A E+ +PV VF +DEMID IGVTKGKG
Sbjct: 1 MKGLK--QKKAHLMEIQVNGGSIAQKXDYAYGFFEKQVPVEAVFQKDEMIDLIGVTKGKG 58
Query: 301 FKG 303
++G
Sbjct: 59 YEG 61
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
MK LK QKKAHLMEIQ+NGGS+A K +A E+ +PV VF +DEMID IGVTKGKG
Sbjct: 1 MKGLK--QKKAHLMEIQVNGGSIAQKXDYAYGFFEKQVPVEAVFQKDEMIDLIGVTKGKG 58
Query: 612 FKECV 616
++ V
Sbjct: 59 YEGVV 63
>gi|154343493|ref|XP_001567692.1| putative ribosomal protein L3, partial [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065024|emb|CAM43136.1| putative ribosomal protein L3, partial [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 131
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 103/130 (79%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDD T+ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARAFPKDDATQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VE VTILE PPMV+VG++GY +TP GL++ TVWA H S E RRR+YKN
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGLKTMGTVWAHHTSVEFRRRYYKN 121
Query: 159 WYKSRQKAFT 168
W +S Q AF+
Sbjct: 122 WKQSAQLAFS 131
>gi|326495464|dbj|BAJ85828.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 213
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 96/113 (84%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++GV +RW
Sbjct: 1 KKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRW 60
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 61 GVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 113
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 46 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 104
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 105 -MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRV 163
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 164 VTLRQ-SLLKQTSRLA-LEEIKLKFVDTSSKFGHGR 197
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%)
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
KKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++G
Sbjct: 1 KKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEG 55
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++ V
Sbjct: 1 KKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVV 57
>gi|13517923|gb|AAK29057.1|AF346004_1 L3 ribosomal protein, partial [Lolium perenne]
Length = 220
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 97/115 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++GV +
Sbjct: 6 KQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVT 65
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +LPRKTH+GL KVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 66 RWGVTRLPRKTHRGLPKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 120
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 105/143 (73%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GL KVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 53 GVTKGKGYEGVVTRWGVTRLPRKTHRGLPKVACIGAWHPARVSYTVARAGQNGYHHRTE- 111
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++AST++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 112 -MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 170
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
+TLR+ LLK+ + A L EI+L
Sbjct: 171 VTLRQ-SLLKQTSRLA-LEEIKL 191
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 46/57 (80%)
Query: 247 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++G
Sbjct: 6 KQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEG 62
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++ V
Sbjct: 6 KQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVV 64
>gi|222424540|dbj|BAH20225.1| AT1G61580 [Arabidopsis thaliana]
Length = 257
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTKGKG
Sbjct: 38 MKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKG 95
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+YR+
Sbjct: 96 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRV 155
Query: 428 G 428
G
Sbjct: 156 G 156
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 106/153 (69%), Gaps = 14/153 (9%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 89 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 147
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++A T+YD TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 148 -MNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRV 206
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL-------NGG 572
+TLR+ L K+ + + EI+L NGG
Sbjct: 207 VTLRQT--LLKQTSRLTMEEIKLKFIDAASNGG 237
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 73/133 (54%), Gaps = 35/133 (26%)
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
SKK + + GKK I L KM KYC VIRV+AHTQ ++
Sbjct: 1 SKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRK----------------------- 37
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
MK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMI
Sbjct: 38 ----------MKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMI 85
Query: 291 DCIGVTKGKGFKG 303
D IGVTKGKG++G
Sbjct: 86 DIIGVTKGKGYEG 98
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 35 IRKMKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTK 92
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 93 GKGYEGVV 100
>gi|67594775|ref|XP_665877.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656728|gb|EAL35641.1| hypothetical protein Chro.50225 [Cryptosporidium hominis]
Length = 305
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 98/125 (78%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KKA +MEIQ+NGG+V+DKI + + EQPIPV +F ++EMID IG++KGKG+KGV SR
Sbjct: 89 KKKADIMEIQVNGGTVSDKIDFCVRCFEQPIPVSTIFNENEMIDIIGISKGKGYKGVISR 148
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W KLPRKT +G+RKV+CIGAWHP+RVQF V RAGQKGY RTE NKKIYR+G G +
Sbjct: 149 WGVTKLPRKTRRGVRKVSCIGAWHPARVQFQVPRAGQKGYGQRTETNKKIYRIGRGDDPR 208
Query: 435 DGKVS 439
+ S
Sbjct: 209 NASTS 213
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 112/183 (61%), Gaps = 39/183 (21%)
Query: 121 MVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGK 180
M+ VG +GY+ETP+GLR+ TV+A +LS+EC+RRFYKN+Y+S++KAFTK ++ + +
Sbjct: 1 MICVGFVGYIETPNGLRALTTVFAGYLSEECKRRFYKNYYRSKRKAFTKYARNYAE---N 57
Query: 181 KTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQ 240
+ + ++ + +YC VIR + HTQ + L+
Sbjct: 58 QRMEAEIARCKQYCTVIRALCHTQVSKTGLN----------------------------- 88
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
+KKA +MEIQ+NGG+V+DKI + + EQPIPV +F ++EMID IG++KGKG
Sbjct: 89 -------KKKADIMEIQVNGGTVSDKIDFCVRCFEQPIPVSTIFNENEMIDIIGISKGKG 141
Query: 301 FKG 303
+KG
Sbjct: 142 YKG 144
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 88/125 (70%), Gaps = 6/125 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G V SRW KLPRKT +G+RKV+CIGAWHP+RVQF V RAGQKGY RTE
Sbjct: 135 GISKGKGYKGVISRWGVTKLPRKTRRGVRKVSCIGAWHPARVQFQVPRAGQKGYGQRTET 194
Query: 490 FLCKKKYLSMVIKN---NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK + + NAST DLTEK+ITPMGGFP YG VN DFLM+KGC +G KKR+
Sbjct: 195 ---NKKIYRIGRGDDPRNASTSADLTEKTITPMGGFPRYGVVNQDFLMLKGCTVGCKKRL 251
Query: 547 ITLRK 551
+TLRK
Sbjct: 252 LTLRK 256
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+KKA +MEIQ+NGG+V+DKI + + EQPIPV +F ++EMID IG++KGKG+K
Sbjct: 89 KKKADIMEIQVNGGTVSDKIDFCVRCFEQPIPVSTIFNENEMIDIIGISKGKGYK 143
>gi|392349059|ref|XP_003750279.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L3-like
[Rattus norvegicus]
Length = 358
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 100/122 (81%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S+R FSAPRHGS+GF P+K S H GKVK FPKDD +KPVHLT F+ +KA MTHI+++ D
Sbjct: 2 SYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RP SK+NKKE+VE V I+ETPPMV++G++GY+E P GL +FK V+AEH+S + ++ FYKN
Sbjct: 62 RPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKN 121
Query: 159 WY 160
W+
Sbjct: 122 WH 123
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 88/127 (69%), Gaps = 8/127 (6%)
Query: 313 KRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGV 371
+ KKAHLMEIQ+ G + +++W V QVF DE+ID I TKG G+KGV
Sbjct: 134 REMKKAHLMEIQVMGHCGXEARLSWREA-------VNQVFGXDEIIDVIKETKGNGYKGV 186
Query: 372 TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
T HTKKLP KTH+GL KVAC+GAWHP+RV F+VA+ GQKGYHH TE NKKI ++G G
Sbjct: 187 TRVXHTKKLPXKTHRGLPKVACVGAWHPARVTFSVAQVGQKGYHHXTEXNKKICKIGQGY 246
Query: 432 HTKDGKV 438
KDGK+
Sbjct: 247 LIKDGKL 253
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 97/143 (67%), Gaps = 7/143 (4%)
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELF--LC 492
+G VT HTKKLP KTH+GL KVAC+GAWHP+RV F+VA+ GQKGYHH TE +C
Sbjct: 181 NGYKGVTRVXHTKKLPXKTHRGLPKVACVGAWHPARVTFSVAQVGQKGYHHXTEXNKKIC 240
Query: 493 K--KKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
K + YL +IKNNA T+Y L++KSI +GGF HYGEV NDF+ +KGC + KK +
Sbjct: 241 KIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTKKXTL 300
Query: 548 TLRKMKLLKKRQKKAHLMEIQLN 570
T+ K L++ Q ++ +LN
Sbjct: 301 TICKYLLVQTIQWALKKIDPKLN 323
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 246 KRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ KKAHLMEIQ+ G + +++W V QVF DE+ID I TKG G+KG
Sbjct: 134 REMKKAHLMEIQVMGHCGXEARLSWREA-------VNQVFGXDEIIDVIKETKGNGYKG 185
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 557 KRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ KKAHLMEIQ+ G + +++W V QVF DE+ID I TKG G+K
Sbjct: 134 REMKKAHLMEIQVMGHCGXEARLSWREA-------VNQVFGXDEIIDVIKETKGNGYK 184
>gi|126649185|ref|XP_001388265.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117187|gb|EAZ51287.1| hypothetical protein cgd5_1580 [Cryptosporidium parvum Iowa II]
gi|323508581|dbj|BAJ77184.1| cgd5_1580 [Cryptosporidium parvum]
gi|323509637|dbj|BAJ77711.1| cgd5_1580 [Cryptosporidium parvum]
Length = 305
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 98/125 (78%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KKA +MEIQ+NGG+V+DKI + + EQPIPV +F ++EMID IG++KGKG+KGV SR
Sbjct: 89 KKKADIMEIQVNGGTVSDKIDFCVRCFEQPIPVSTIFNENEMIDIIGISKGKGYKGVISR 148
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W KLPRKT +G+RKV+CIGAWHP+RVQF V RAGQKGY RTE NKKIYR+G G +
Sbjct: 149 WGVTKLPRKTRRGVRKVSCIGAWHPARVQFQVPRAGQKGYGQRTETNKKIYRIGRGDDPR 208
Query: 435 DGKVS 439
+ S
Sbjct: 209 NASTS 213
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 112/183 (61%), Gaps = 39/183 (21%)
Query: 121 MVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGK 180
M+ VG +GY+ETP+GLR+ TV+A +LS+EC+RRFYKN+Y+S++KAFTK ++ + +
Sbjct: 1 MICVGFVGYIETPNGLRALTTVFAGYLSEECKRRFYKNYYRSKRKAFTKYARNYAE---N 57
Query: 181 KTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQ 240
+ + ++ + +YC VIR + HTQ + L+
Sbjct: 58 QRMEAEIARCKQYCTVIRALCHTQVSKTGLN----------------------------- 88
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
+KKA +MEIQ+NGG+V+DKI + + EQPIPV +F ++EMID IG++KGKG
Sbjct: 89 -------KKKADIMEIQVNGGTVSDKIDFCVRCFEQPIPVSTIFNENEMIDIIGISKGKG 141
Query: 301 FKG 303
+KG
Sbjct: 142 YKG 144
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 88/125 (70%), Gaps = 6/125 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G V SRW KLPRKT +G+RKV+CIGAWHP+RVQF V RAGQKGY RTE
Sbjct: 135 GISKGKGYKGVISRWGVTKLPRKTRRGVRKVSCIGAWHPARVQFQVPRAGQKGYGQRTET 194
Query: 490 FLCKKKYLSMVIKN---NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK + + NAST DLTEK+ITPMGGFP YG VN DFLM+KGC +G KKR+
Sbjct: 195 ---NKKIYRIGRGDDPRNASTSADLTEKTITPMGGFPRYGVVNQDFLMLKGCTVGCKKRL 251
Query: 547 ITLRK 551
+TLRK
Sbjct: 252 LTLRK 256
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+KKA +MEIQ+NGG+V+DKI + + EQPIPV +F ++EMID IG++KGKG+K
Sbjct: 89 KKKADIMEIQVNGGTVSDKIDFCVRCFEQPIPVSTIFNENEMIDIIGISKGKGYK 143
>gi|61740425|gb|AAX54475.1| ribosomal protein L3 [Lolium multiflorum]
Length = 132
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 94/113 (83%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++ +RW
Sbjct: 1 KKAHLMEIQVNGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYRRCRTRW 60
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 61 GVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 113
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%), Gaps = 5/77 (6%)
Query: 442 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVI 501
+RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE + KK Y +
Sbjct: 58 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE--MNKKVYKIGKV 115
Query: 502 ---KNNASTDYDLTEKS 515
++AST++D TEK
Sbjct: 116 GQETHDASTEFDRTEKD 132
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 44/56 (78%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKEC 615
KKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++ C
Sbjct: 1 KKAHLMEIQVNGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYRRC 56
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
KKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++
Sbjct: 1 KKAHLMEIQVNGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYR 54
>gi|449707707|gb|EMD47318.1| 60S ribosomal protein L3, partial [Entamoeba histolytica KU27]
Length = 168
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 111/166 (66%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F+P+KR + R V FPKD+ + HLT F+G+KAGMTH++RE
Sbjct: 2 SHRKFEAPRHGSLAFHPRKRVHKVRATVSAFPKDNAAEKPHLTGFLGFKAGMTHVIREVK 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R +K+ K ++E VTI+ETPPMV+ G +GY +T GL+ V+AEH++ E +RR+ K
Sbjct: 62 RTNTKLPKDGVLEPVTIIETPPMVVAGFVGYKKTTTGLKPITAVFAEHIADEFKRRYTKK 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ 204
WYK+ + F ++K+ D K + +R + C V+RVIAHTQ
Sbjct: 122 WYKNTKNQFAVHTEKYNDVKAKSKRERQIRLIKNRCDVVRVIAHTQ 167
>gi|300709014|ref|XP_002996676.1| 60S ribosomal protein L3 [Nosema ceranae BRL01]
gi|239605995|gb|EEQ83005.1| hypothetical protein NCER_100207 [Nosema ceranae BRL01]
Length = 384
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 143/266 (53%), Gaps = 44/266 (16%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVR-EA 97
S RKF+APRHGS+ F P+KRS R ++ FPKDD P+HLT FIGYKAGMTH++R
Sbjct: 2 SCRKFNAPRHGSLAFCPRKRSKTIRPPIRAFPKDDCNAPIHLTGFIGYKAGMTHVIRTRT 61
Query: 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K + KEI++AVTI+ETP VI GV GY +T GL+ TV++ H+ Q RR Y
Sbjct: 62 VQTKNKQSVKEILDAVTIIETPANVIYGVTGYEQTGKGLKRIATVFSSHIDQGVLRRRYG 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
++ + S +DK Q + ++ K +IRV+ H+Q
Sbjct: 122 LKWEEISAKLSDCS--IEDK------EQKIAELKKRACIIRVLVHSQ------------- 160
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
K+ KK+H EIQ+NGG+V K+ WA ++ E+
Sbjct: 161 ----------------------PTKIPVLNLKKSHTAEIQVNGGNVEQKVDWALENFEKE 198
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I + +F +E +D IGVTKGKGF G
Sbjct: 199 INIRDIFDINENLDVIGVTKGKGFTG 224
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 93/136 (68%), Gaps = 3/136 (2%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K PRK+ KG+RKVACIGAWHPSRV TVARAG KG+H RTE+
Sbjct: 215 GVTKGKGFTGVVKRFGVTKQPRKSRKGIRKVACIGAWHPSRVMTTVARAGGKGFHRRTEI 274
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
KK Y+ K T++DLTEK ITPMGGFPHYG + NDF+M+KG +GP KRV+TL
Sbjct: 275 --NKKVYMIGHGKEKIKTEFDLTEKLITPMGGFPHYGSIKNDFIMLKGAIIGPSKRVVTL 332
Query: 550 RKMKLLKKRQKKAHLM 565
RK LLK +K L+
Sbjct: 333 RK-SLLKNHKKSEDLV 347
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 86/115 (74%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KK+H EIQ+NGG+V K+ WA ++ E+ I + +F +E +D IGVTKGKGF GV R+
Sbjct: 170 KKSHTAEIQVNGGNVEQKVDWALENFEKEINIRDIFDINENLDVIGVTKGKGFTGVVKRF 229
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
K PRK+ KG+RKVACIGAWHPSRV TVARAG KG+H RTE+NKK+Y +G G
Sbjct: 230 GVTKQPRKSRKGIRKVACIGAWHPSRVMTTVARAGGKGFHRRTEINKKVYMIGHG 284
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KK+H EIQ+NGG+V K+ WA ++ E+ I + +F +E +D IGVTKGKGF V
Sbjct: 170 KKSHTAEIQVNGGNVEQKVDWALENFEKEINIRDIFDINENLDVIGVTKGKGFTGVV 226
>gi|392341252|ref|XP_003754289.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L3-like
[Rattus norvegicus]
Length = 358
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 99/122 (81%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S+R FSAPRHGS+GF P+K S H GKVK FPKDD +KPVHLT F+ +KA MTHI+++ D
Sbjct: 2 SYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RP SK+NKKE+VE V I+ETPPMV++G++GY+E P GL +FK V+AEH+ + ++ FYKN
Sbjct: 62 RPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHIGGKSKKCFYKN 121
Query: 159 WY 160
W+
Sbjct: 122 WH 123
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 88/127 (69%), Gaps = 8/127 (6%)
Query: 313 KRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGV 371
+ KKAHLMEIQ+ G + +++W V QVF DE+ID I TKG G+KGV
Sbjct: 134 REMKKAHLMEIQVMGHCGXEARLSWREA-------VNQVFGXDEIIDVIKETKGNGYKGV 186
Query: 372 TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
T HTKKLP KTH+GL KVAC+GAWHP+RV F+VA+ GQKGYHH TE NKKI ++G G
Sbjct: 187 TRVXHTKKLPXKTHRGLPKVACVGAWHPARVTFSVAQVGQKGYHHXTEXNKKICKIGQGY 246
Query: 432 HTKDGKV 438
KDGK+
Sbjct: 247 LIKDGKL 253
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 97/143 (67%), Gaps = 7/143 (4%)
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELF--LC 492
+G VT HTKKLP KTH+GL KVAC+GAWHP+RV F+VA+ GQKGYHH TE +C
Sbjct: 181 NGYKGVTRVXHTKKLPXKTHRGLPKVACVGAWHPARVTFSVAQVGQKGYHHXTEXNKKIC 240
Query: 493 K--KKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
K + YL +IKNNA T+Y L++KSI +GGF HYGEV NDF+ +KGC + KK +
Sbjct: 241 KIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTKKXTL 300
Query: 548 TLRKMKLLKKRQKKAHLMEIQLN 570
T+ K L++ Q ++ +LN
Sbjct: 301 TICKYLLVQTIQWALKKIDPKLN 323
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 246 KRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ KKAHLMEIQ+ G + +++W V QVF DE+ID I TKG G+KG
Sbjct: 134 REMKKAHLMEIQVMGHCGXEARLSWREA-------VNQVFGXDEIIDVIKETKGNGYKG 185
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 557 KRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ KKAHLMEIQ+ G + +++W V QVF DE+ID I TKG G+K
Sbjct: 134 REMKKAHLMEIQVMGHCGXEARLSWREA-------VNQVFGXDEIIDVIKETKGNGYK 184
>gi|427188202|dbj|BAM69086.1| 60S ribosomal protein L3, partial [Peranema trichophorum]
Length = 333
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/122 (63%), Positives = 97/122 (79%)
Query: 307 AMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 366
A K+ RQKK+H MEIQ+NGGS A+K+ +A + LEQP+PV VF + EM+D I TKG
Sbjct: 89 AHKIPVLRQKKSHNMEIQINGGSTAEKVDFALKLLEQPLPVNTVFQESEMVDVIATTKGH 148
Query: 367 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
GF+GV RW +LPRKTHKGLRKVACIGAWHP+RV FTV RAGQ G+HHRTE++KKI++
Sbjct: 149 GFEGVIHRWGVTRLPRKTHKGLRKVACIGAWHPARVGFTVPRAGQNGFHHRTEIHKKIFK 208
Query: 427 MG 428
+G
Sbjct: 209 IG 210
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 86/114 (75%), Gaps = 2/114 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELF--LCKKKYL 497
V RW +LPRKTHKGLRKVACIGAWHP+RV FTV RAGQ G+HHRTE+ + K
Sbjct: 153 VIHRWGVTRLPRKTHKGLRKVACIGAWHPARVGFTVPRAGQNGFHHRTEIHKKIFKIGKS 212
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ K NA D DLT+K+ITPMGGF +YG V +D++M+KGC GP+KRVITLRK
Sbjct: 213 AEDDKANAKCDADLTDKTITPMGGFVNYGTVKHDYVMLKGCIAGPRKRVITLRK 266
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 104/187 (55%), Gaps = 35/187 (18%)
Query: 117 ETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQD 176
ETPPM++VG++GY+ TP G R+ KT+WAE L R YKN+ S++KA+ K +
Sbjct: 1 ETPPMIVVGIVGYIRTPRGYRTLKTIWAEQLPVGFIRSLYKNYALSKKKAYKNYLAKKKQ 60
Query: 177 KLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHE 236
+ GK+ +D+ + KYC +IRVIA TQ
Sbjct: 61 EKGKQQTERDIASLKKYCSIIRVIAITQAH------------------------------ 90
Query: 237 SHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVT 296
K+ RQKK+H MEIQ+NGGS A+K+ +A + LEQP+PV VF + EM+D I T
Sbjct: 91 -----KIPVLRQKKSHNMEIQINGGSTAEKVDFALKLLEQPLPVNTVFQESEMVDVIATT 145
Query: 297 KGKGFKG 303
KG GF+G
Sbjct: 146 KGHGFEG 152
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 545 RVITLRKM-KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RVI + + K+ RQKK+H MEIQ+NGGS A+K+ +A + LEQP+PV VF + EM+D
Sbjct: 82 RVIAITQAHKIPVLRQKKSHNMEIQINGGSTAEKVDFALKLLEQPLPVNTVFQESEMVDV 141
Query: 604 IGVTKGKGFKECVH 617
I TKG GF+ +H
Sbjct: 142 IATTKGHGFEGVIH 155
>gi|330039014|ref|XP_003239763.1| 60S ribosomal protein L3 [Cryptomonas paramecium]
gi|327206688|gb|AEA38865.1| 60S ribosomal protein L3 [Cryptomonas paramecium]
Length = 331
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 127/216 (58%), Gaps = 42/216 (19%)
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTH+++E D+PGSK++KK+++EA T++ETPP+VI G++GYV TP GL++FKT+W+++LS
Sbjct: 1 MTHVIKEVDKPGSKLHKKDVIEAATVVETPPLVIAGIVGYVSTPKGLKAFKTIWSDNLSH 60
Query: 150 ECRRRFYKNWYKSRQKAFTK--ASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQ 207
+ R +YKNWYKS++KAF+K KK +K + Q M K+CKV R I H Q
Sbjct: 61 QFLRNYYKNWYKSKKKAFSKYFIVKKKISTFFEKNVLQ----MKKFCKVFRFIVHPNICQ 116
Query: 208 QSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKI 267
S+ ++KKA + EIQ+NGGS+ DKI
Sbjct: 117 TSM------------------------------------KKKKAEICEIQVNGGSIHDKI 140
Query: 268 AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
++ + L + V VF E +D I +TKGKGF G
Sbjct: 141 SFCLKLLGNQVTVNTVFKDGEYVDTIAITKGKGFTG 176
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 85/115 (73%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
++KKA + EIQ+NGGS+ DKI++ + L + V VF E +D I +TKGKGF GV
Sbjct: 120 KKKKAEICEIQVNGGSIHDKISFCLKLLGNQVTVNTVFKDGEYVDTIAITKGKGFTGVVQ 179
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW KLPRKT +G RKVACIG+WHPSRV ++V RAGQKGYHHRT+ N ++Y++G
Sbjct: 180 RWGVTKLPRKTRRGARKVACIGSWHPSRVSYSVPRAGQKGYHHRTQSNIQVYKIG 234
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 8/114 (7%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW KLPRKT +G RKVACIG+WHPSRV ++V RAGQKGYHHRT+ +
Sbjct: 173 GFTGVVQRWGVTKLPRKTRRGARKVACIGSWHPSRVSYSVPRAGQKGYHHRTQSNI---- 228
Query: 496 YLSMVIKNNASTDY----DLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ + K++ D+ L +K+I+P+GGFP+YG + DF+M KGC G K+R
Sbjct: 229 QVYKIGKSSKGFDFFEKTPLIQKNISPIGGFPYYGIIKTDFIMFKGCITGSKRR 282
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 558 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
++KKA + EIQ+NGGS+ DKI++ + L + V VF E +D I +TKGKGF V
Sbjct: 120 KKKKAEICEIQVNGGSIHDKISFCLKLLGNQVTVNTVFKDGEYVDTIAITKGKGFTGVVQ 179
>gi|37654302|gb|AAQ96256.1| LRRGT00043 [Rattus norvegicus]
Length = 867
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/132 (62%), Positives = 100/132 (75%), Gaps = 7/132 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKK PRKTH+GLRKVACIGAW P+ V F+VARAGQKGYHH+TE
Sbjct: 360 GMTKGKGYKGVTSRWHTKKPPRKTHQGLRKVACIGAWLPAHVAFSVARAGQKGYHHQTET 419
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL + KNNASTDYDL+++SI P+GGF HYGEV NDFLM++GC +G
Sbjct: 420 NKKIYKIGQGYLIKDGKLTKNNASTDYDLSDRSINPLGGFVHYGEVTNDFLMLEGCVVGT 479
Query: 543 KKRVITLRKMKL 554
KKRV+TLRK L
Sbjct: 480 KKRVLTLRKSLL 491
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 92/112 (82%)
Query: 328 GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKG 387
G+VA+K+ WAR+ P+ QVF Q EMID +G+TKGKG+KGVTSRWHTKK PRKTH+G
Sbjct: 327 GTVAEKLDWAREAAGAAGPLNQVFGQGEMIDVMGMTKGKGYKGVTSRWHTKKPPRKTHQG 386
Query: 388 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVS 439
LRKVACIGAW P+ V F+VARAGQKGYHH+TE NKKIY++G G KDGK++
Sbjct: 387 LRKVACIGAWLPAHVAFSVARAGQKGYHHQTETNKKIYKIGQGYLIKDGKLT 438
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 261 GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
G+VA+K+ WAR+ P+ QVF Q EMID +G+TKGKG+KG
Sbjct: 327 GTVAEKLDWAREAAGAAGPLNQVFGQGEMIDVMGMTKGKGYKG 369
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 572 GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
G+VA+K+ WAR+ P+ QVF Q EMID +G+TKGKG+K
Sbjct: 327 GTVAEKLDWAREAAGAAGPLNQVFGQGEMIDVMGMTKGKGYK 368
>gi|414587225|tpg|DAA37796.1| TPA: hypothetical protein ZEAMMB73_342493 [Zea mays]
Length = 239
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 91/108 (84%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FP+DDP KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDPKKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEH 146
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR + A H
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRKVACIGAWH 109
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 97/134 (72%), Gaps = 7/134 (5%)
Query: 452 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL---SMVIKNNASTD 508
KT +GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+ KK Y + ++AST+
Sbjct: 94 KTPRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM--NKKVYKIGKAGQETHDASTE 151
Query: 509 YDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQ 568
+D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV+TLR+ LLK+ + A L EI+
Sbjct: 152 FDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRVVTLRQ-SLLKQTSRLA-LEEIK 209
Query: 569 LNGGSVADKIAWAR 582
L + K R
Sbjct: 210 LKFIDTSSKFGHGR 223
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 47/54 (87%), Gaps = 1/54 (1%)
Query: 383 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-AGIHTKD 435
KT +GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G AG T D
Sbjct: 94 KTPRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKAGQETHD 147
>gi|294917113|ref|XP_002778404.1| ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
gi|239886795|gb|EER10199.1| ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
Length = 230
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 95/121 (78%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
+K QKKAH++E+Q+NGGSV+DK+ + + E+ +P+ VF +DEM+D IGVTKG G
Sbjct: 8 VKLTQKKAHIVEVQVNGGSVSDKVEFCQSLFEKEVPISSVFDKDEMVDIIGVTKGHGNTS 67
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
VT+RW +L RKTH+GLRKVACIGAWHP+RVQF V RAGQ GYHHR E+NKKIYR+G
Sbjct: 68 VTTRWGVTRLARKTHRGLRKVACIGAWHPARVQFQVPRAGQMGYHHRVEINKKIYRIGKA 127
Query: 431 I 431
+
Sbjct: 128 L 128
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 103/144 (71%), Gaps = 8/144 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G SVT+RW +L RKTH+GLRKVACIGAWHP+RVQF V RAGQ GYHHR E
Sbjct: 58 GVTKGHGNTSVTTRWGVTRLARKTHRGLRKVACIGAWHPARVQFQVPRAGQMGYHHRVE- 116
Query: 490 FLCKKKY-LSMVIK---NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ KK Y + ++ NNA+ DLT+K+ITPMGGFPHYGEVN D++M+KG GPKKR
Sbjct: 117 -INKKIYRIGKALREDPNNAAGSNDLTQKAITPMGGFPHYGEVNEDWVMLKGTVTGPKKR 175
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK LL + + A L +I L
Sbjct: 176 VITLRK-SLLPQTSRNA-LEKIDL 197
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 238 HVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 297
H Q+ +K QKKAH++E+Q+NGGSV+DK+ + + E+ +P+ VF +DEM+D IGVTK
Sbjct: 2 HTQVSKVKLTQKKAHIVEVQVNGGSVSDKVEFCQSLFEKEVPISSVFDKDEMVDIIGVTK 61
Query: 298 GKG 300
G G
Sbjct: 62 GHG 64
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
+K QKKAH++E+Q+NGGSV+DK+ + + E+ +P+ VF +DEM+D IGVTKG G
Sbjct: 8 VKLTQKKAHIVEVQVNGGSVSDKVEFCQSLFEKEVPISSVFDKDEMVDIIGVTKGHG 64
>gi|395756298|ref|XP_002834016.2| PREDICTED: 60S ribosomal protein L3-like, partial [Pongo abelii]
Length = 164
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/131 (64%), Positives = 99/131 (75%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH E+ + + AWA+ LE+ +Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHTSEVHKSETPSQKENAWAQGRLEKQGTGHSEDSQSEVIDVIAVTKGRG 60
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 61 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 120
Query: 428 GAGIHTKDGKV 438
G G H +DGK+
Sbjct: 121 GRGPHMEDGKL 131
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 68/89 (76%), Gaps = 11/89 (12%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL-- 497
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTEL KK Y
Sbjct: 64 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELN--KKIYRIG 121
Query: 498 -------SMVIKNNASTDYDLTEKSITPM 519
++KNNAST YD+T K+IT +
Sbjct: 122 RGPHMEDGKLVKNNASTSYDVTAKAITLL 150
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
MKLL RQKKAH E+ + + AWA+ LE+ +Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHTSEVHKSETPSQKENAWAQGRLEKQGTGHSEDSQSEVIDVIAVTKGRG 60
Query: 301 FKG 303
KG
Sbjct: 61 VKG 63
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
MKLL RQKKAH E+ + + AWA+ LE+ +Q E+ID I VTKG+G
Sbjct: 1 MKLLPFRQKKAHTSEVHKSETPSQKENAWAQGRLEKQGTGHSEDSQSEVIDVIAVTKGRG 60
Query: 612 FK 613
K
Sbjct: 61 VK 62
>gi|3914741|sp|Q29293.1|RL3_PIG RecName: Full=60S ribosomal protein L3
Length = 130
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 85/94 (90%)
Query: 345 IPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQF 404
+PV QVF QDEMID IGVTKGKG+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+R F
Sbjct: 2 VPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAF 61
Query: 405 TVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
+VARAGQKGYHHRTE+NKKIY++G G KDGK+
Sbjct: 62 SVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKL 95
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 85/113 (75%), Gaps = 7/113 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+R F+VARAGQKGYHHRTE
Sbjct: 18 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEI 77
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMI 535
++ + YL +IKNN TDYDL++KSI P+G F HYGEV NDF+M+
Sbjct: 78 NKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PV QVF QDEMID IGVTKGKG+KG
Sbjct: 2 VPVNQVFGQDEMIDVIGVTKGKGYKG 27
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 589 IPVGQVFAQDEMIDCIGVTKGKGFK 613
+PV QVF QDEMID IGVTKGKG+K
Sbjct: 2 VPVNQVFGQDEMIDVIGVTKGKGYK 26
>gi|326574320|gb|ADZ95675.1| 60S ribosomal protein L3 [Nosema bombycis]
Length = 664
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 142/258 (55%), Gaps = 48/258 (18%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVR-EADR 99
RKF+APRHGS+ F P+KRS + ++ FPKD + +HLTAFIGYKAGMTH++R + +
Sbjct: 176 RKFNAPRHGSLAFGPRKRSKTIKPSIRAFPKDVQEEKIHLTAFIGYKAGMTHVIRSKIIQ 235
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRR-FYKN 158
+K KEI++AVT++ETPPMVI GV GY T GL TV A H+ + RRR F K
Sbjct: 236 TKNKQLSKEIMDAVTLIETPPMVIYGVTGYEVTGKGLNRIATVLAPHIDESVRRREFGKR 295
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQ-NQQQSLHQNQQSH 217
W + + K++ K+ +DL ++ K VIR++AHTQ + +LH
Sbjct: 296 W-----EQLSANIKEYN----KEKAEKDLEEIRKRASVIRILAHTQPTKIPALH------ 340
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
KK+H+ EIQ+NGG++ +K+ WA E+
Sbjct: 341 ------------------------------LKKSHISEIQVNGGTINEKVDWALDKFEKE 370
Query: 278 IPVGQVFAQDEMIDCIGV 295
+ + +VF +E +D IGV
Sbjct: 371 VTIDEVFEVNENLDTIGV 388
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 460 VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPM 519
VACIGAWHPSRV TVARAGQ G+H RTE KK Y+ T++DLTEK ITP+
Sbjct: 388 VACIGAWHPSRVMTTVARAGQMGFHRRTET--NKKVYMIGNGNELIKTEFDLTEKPITPL 445
Query: 520 GGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLM 565
GG PHYG + ND++M+KG +GP+KRV+TLRK L K ++ L+
Sbjct: 446 GGIPHYGSIKNDYIMVKGAVIGPRKRVVTLRK-SLYKTKKASEELI 490
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 29/115 (25%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KK+H+ EIQ+NGG++ +K+ WA E+ + + +VF +E +D IG
Sbjct: 342 KKSHISEIQVNGGTINEKVDWALDKFEKEVTIDEVFEVNENLDTIG-------------- 387
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
VACIGAWHPSRV TVARAGQ G+H RTE NKK+Y +G G
Sbjct: 388 ---------------VACIGAWHPSRVMTTVARAGQMGFHRRTETNKKVYMIGNG 427
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGV 606
KK+H+ EIQ+NGG++ +K+ WA E+ + + +VF +E +D IGV
Sbjct: 342 KKSHISEIQVNGGTINEKVDWALDKFEKEVTIDEVFEVNENLDTIGV 388
>gi|388493378|gb|AFK34755.1| unknown [Lotus japonicus]
Length = 173
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 107/156 (68%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 6 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 64
Query: 490 FLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + ++A T++D TEK ITPMGGFPHYG V +DFLMIKG C+GPKKRV
Sbjct: 65 -LNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGFPHYGIVKDDFLMIKGGCVGPKKRV 123
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LL + + A L EI+L + K R
Sbjct: 124 VTLRQ-SLLTQTSRVA-LEEIKLKFIDTSSKFGHGR 157
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 66/73 (90%)
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 415
MID IGVTKGKG++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYH
Sbjct: 1 MIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYH 60
Query: 416 HRTELNKKIYRMG 428
HRTELNKKIYR+G
Sbjct: 61 HRTELNKKIYRLG 73
>gi|156359545|ref|XP_001624828.1| predicted protein [Nematostella vectensis]
gi|156211630|gb|EDO32728.1| predicted protein [Nematostella vectensis]
Length = 94
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/93 (83%), Positives = 83/93 (89%)
Query: 346 PVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFT 405
PV +VF+ DEMID IGVTKG GFKGVT RW TKKLPRKTHKGLRKVACIGAWHP+RV F+
Sbjct: 1 PVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFS 60
Query: 406 VARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
VARAGQ GYHHRTELNKKIYR+G GIH KDGKV
Sbjct: 61 VARAGQAGYHHRTELNKKIYRIGQGIHKKDGKV 93
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/60 (76%), Positives = 49/60 (81%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VT RW TKKLPRKTHKGLRKVACIGAWHP+RV F+VARAGQ GYHHRTEL
Sbjct: 16 GVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTEL 75
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 21/25 (84%)
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +VF+ DEMID IGVTKG GFKG
Sbjct: 1 PVRKVFSPDEMIDVIGVTKGHGFKG 25
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 590 PVGQVFAQDEMIDCIGVTKGKGFKECVH 617
PV +VF+ DEMID IGVTKG GFK +
Sbjct: 1 PVRKVFSPDEMIDVIGVTKGHGFKGVTY 28
>gi|402471198|gb|EJW05055.1| hypothetical protein EDEG_00836 [Edhazardia aedis USNM 41457]
Length = 408
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 100/129 (77%), Gaps = 1/129 (0%)
Query: 316 KKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
KK+H+ME+Q+NGG +V +K+ WA +++E+ IP+ QVF E+ID I VTKGKGF+G T R
Sbjct: 189 KKSHVMEVQVNGGKNVCEKVDWALENMEKEIPIKQVFQDQEIIDIIAVTKGKGFQGCTKR 248
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
+ T+ LPRKT+KGLRKVACIGAWHPSRV +TV RAGQ G+H RTE+NK+IY++G G
Sbjct: 249 FGTRILPRKTNKGLRKVACIGAWHPSRVMWTVPRAGQMGFHRRTEINKRIYKIGNGTELA 308
Query: 435 DGKVSVTSR 443
+ +T +
Sbjct: 309 KTEFDLTPK 317
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 58/283 (20%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVR--E 96
S RK+ APRHGS+ + P+KR+ + ++ FPKD + HLTA IGYK GM+HI+R E
Sbjct: 2 SCRKYEAPRHGSLAYCPRKRANSVKQSLRAFPKDKGGE-CHLTATIGYKTGMSHIIRTSE 60
Query: 97 ADRPGSKINKK---EIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRR 153
RP K K E+ +AVT +E PP++I G++GY +T GL+ ++A++LS R
Sbjct: 61 RQRPTQKKQKATTHEVFDAVTFIECPPVIIFGIVGYKKTITGLKVHSRLFAKNLSDGVLR 120
Query: 154 RFYK------------NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIA 201
+ + N S + +K+ D + I +++ + K C IRV+
Sbjct: 121 AYNRRHTLKVNSASNPNTTVSTKNPLDFYVRKYDD---ENEIENEIKNLKK-CDSIRVLI 176
Query: 202 HTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGG 261
+Q + K+ KK+H+ME+Q+NGG
Sbjct: 177 QSQTE-----------------------------------KIRTLNTKKSHVMEVQVNGG 201
Query: 262 -SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+V +K+ WA +++E+ IP+ QVF E+ID I VTKGKGF+G
Sbjct: 202 KNVCEKVDWALENMEKEIPIKQVFQDQEIIDIIAVTKGKGFQG 244
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 84/116 (72%), Gaps = 2/116 (1%)
Query: 441 TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
T R+ T+ LPRKT+KGLRKVACIGAWHPSRV +TV RAGQ G+H RTE + K+ Y
Sbjct: 246 TKRFGTRILPRKTNKGLRKVACIGAWHPSRVMWTVPRAGQMGFHRRTE--INKRIYKIGN 303
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLK 556
A T++DLT K+I P+GGF HYG + ND+LMIKG GP+KRV+TLRK K
Sbjct: 304 GTELAKTEFDLTPKTINPVGGFKHYGNIQNDYLMIKGSVGGPRKRVVTLRKSLFTK 359
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Query: 500 VIKNNASTDYDLTEKSITPMG----GFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+K N++++ + T + P+ + E+ N+ +K C + +I + K+
Sbjct: 127 TLKVNSASNPNTTVSTKNPLDFYVRKYDDENEIENEIKNLKKC--DSIRVLIQSQTEKIR 184
Query: 556 KKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKE 614
KK+H+ME+Q+NGG +V +K+ WA +++E+ IP+ QVF E+ID I VTKGKGF+
Sbjct: 185 TLNTKKSHVMEVQVNGGKNVCEKVDWALENMEKEIPIKQVFQDQEIIDIIAVTKGKGFQG 244
Query: 615 CV 616
C
Sbjct: 245 CT 246
>gi|294919384|ref|XP_002778527.1| ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
gi|239887018|gb|EER10322.1| ribosomal protein L3, putative [Perkinsus marinus ATCC 50983]
Length = 178
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 103/144 (71%), Gaps = 8/144 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G SVT+RW +L RKTH+GLRKVACIGAWHP+RVQF V RAGQ GYHHR E
Sbjct: 6 GVTKGHGNTSVTTRWGVTRLARKTHRGLRKVACIGAWHPARVQFQVPRAGQMGYHHRVE- 64
Query: 490 FLCKKKY-LSMVIK---NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ KK Y + ++ NNA+ DLT+K+ITPMGGFPHYGEVN D++M+KG GPKKR
Sbjct: 65 -INKKIYRIGKALREDPNNAAGSNDLTQKAITPMGGFPHYGEVNEDWVMLKGTVTGPKKR 123
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK LL + + A L +I L
Sbjct: 124 VITLRK-SLLPQTSRNA-LEKIDL 145
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 61/76 (80%)
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 415
M+D IGVTKG G VT+RW +L RKTH+GLRKVACIGAWHP+RVQF V RAGQ GYH
Sbjct: 1 MVDIIGVTKGHGNTSVTTRWGVTRLARKTHRGLRKVACIGAWHPARVQFQVPRAGQMGYH 60
Query: 416 HRTELNKKIYRMGAGI 431
HR E+NKKIYR+G +
Sbjct: 61 HRVEINKKIYRIGKAL 76
>gi|376337876|gb|AFB33494.1| hypothetical protein 2_6618_01, partial [Pinus cembra]
Length = 141
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 94/125 (75%), Gaps = 5/125 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 18 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 76
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y S +NA T++D TEK ITPMGGFPHYG V +D++MI+GCC+G KKRV
Sbjct: 77 -MNKKIYKIGKSDQESHNAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCVGTKKRV 135
Query: 547 ITLRK 551
+TLR+
Sbjct: 136 VTLRQ 140
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 74/84 (88%)
Query: 345 IPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQF 404
+P+ +F +DEMID IGVTKGKG++GV +RW +LPRKTH+GLRKVACIGAWHP+RV F
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSF 61
Query: 405 TVARAGQKGYHHRTELNKKIYRMG 428
TVARAGQ GYHHRTE+NKKIY++G
Sbjct: 62 TVARAGQNGYHHRTEMNKKIYKIG 85
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+P+ +F +DEMID IGVTKGKG++G
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEG 27
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 589 IPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+P+ +F +DEMID IGVTKGKG++ V
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEGVV 29
>gi|432111882|gb|ELK34924.1| 60S ribosomal protein L3 [Myotis davidii]
Length = 231
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 128/210 (60%), Gaps = 31/210 (14%)
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 415
MID IGVTKGKG+ R H +R + H +V
Sbjct: 1 MIDLIGVTKGKGYNCQVIR-------VIAHTQMRLLPL----HQKKV------------- 36
Query: 416 HRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTV 475
H E+ ++ + G+ G VTSRWHTKKLP KTH+G +KVACI AWHP++V F+V
Sbjct: 37 HLMEIQDEMIDL-IGVTKGKGYKGVTSRWHTKKLPHKTHRGPQKVACIQAWHPAQVAFSV 95
Query: 476 ARAGQKGYHHRTEL---FLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVN 529
A+AGQKGYH TE+ + + YL S +IKNNASTDY L++KSI P+GGF +GEV
Sbjct: 96 AQAGQKGYHPHTEINKIYRIGQGYLIKDSKLIKNNASTDYGLSDKSINPLGGFVCHGEVT 155
Query: 530 NDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
NDF+M+KGC +G KKR++TLRK L++ ++
Sbjct: 156 NDFVMLKGCVVGTKKRMLTLRKSLLMQTKR 185
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 100/156 (64%), Gaps = 36/156 (23%)
Query: 289 MIDCIGVTKGKGFKGEMI------AMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 342
MID IGVTKGKG+ ++I M+LL QKK HLMEIQ
Sbjct: 1 MIDLIGVTKGKGYNCQVIRVIAHTQMRLLPLHQKKVHLMEIQ------------------ 42
Query: 343 QPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV 402
DEMID IGVTKGKG+KGVTSRWHTKKLP KTH+G +KVACI AWHP++V
Sbjct: 43 -----------DEMIDLIGVTKGKGYKGVTSRWHTKKLPHKTHRGPQKVACIQAWHPAQV 91
Query: 403 QFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
F+VA+AGQKGYH TE+N KIYR+G G KD K+
Sbjct: 92 AFSVAQAGQKGYHPHTEIN-KIYRIGQGYLIKDSKL 126
>gi|376337868|gb|AFB33490.1| hypothetical protein 2_6618_01, partial [Larix decidua]
gi|376337870|gb|AFB33491.1| hypothetical protein 2_6618_01, partial [Larix decidua]
gi|376337872|gb|AFB33492.1| hypothetical protein 2_6618_01, partial [Larix decidua]
gi|376337874|gb|AFB33493.1| hypothetical protein 2_6618_01, partial [Larix decidua]
Length = 141
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 92/125 (73%), Gaps = 5/125 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE
Sbjct: 18 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE- 76
Query: 490 FLCKKKYLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y I A T++D TEK ITPMGGFPHYG V +D++MI+GCCMG KKRV
Sbjct: 77 -MNKKIYKIGKIDEESHKAMTEFDRTEKDITPMGGFPHYGIVKDDYIMIRGCCMGTKKRV 135
Query: 547 ITLRK 551
+TLR+
Sbjct: 136 VTLRQ 140
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 74/84 (88%)
Query: 345 IPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQF 404
+P+ +F +DEMID IGVTKGKG++GV +RW +LPRKTH+GLRKVACIGAWHP+RV F
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSF 61
Query: 405 TVARAGQKGYHHRTELNKKIYRMG 428
TVARAGQ GYHHRTE+NKKIY++G
Sbjct: 62 TVARAGQNGYHHRTEMNKKIYKIG 85
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+P+ +F +DEMID IGVTKGKG++G
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEG 27
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 589 IPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+P+ +F +DEMID IGVTKGKG++ V
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEGVV 29
>gi|361068061|gb|AEW08342.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|376337878|gb|AFB33495.1| hypothetical protein 2_6618_01, partial [Pinus mugo]
gi|376337880|gb|AFB33496.1| hypothetical protein 2_6618_01, partial [Pinus mugo]
gi|376337882|gb|AFB33497.1| hypothetical protein 2_6618_01, partial [Pinus mugo]
gi|383162934|gb|AFG64168.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162936|gb|AFG64169.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162938|gb|AFG64170.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162940|gb|AFG64171.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162942|gb|AFG64172.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162944|gb|AFG64173.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162946|gb|AFG64174.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162948|gb|AFG64175.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162950|gb|AFG64176.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162952|gb|AFG64177.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162954|gb|AFG64178.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162956|gb|AFG64179.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162958|gb|AFG64180.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162960|gb|AFG64181.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
gi|383162962|gb|AFG64182.1| Pinus taeda anonymous locus 2_6618_01 genomic sequence
Length = 141
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 94/127 (74%), Gaps = 9/127 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+
Sbjct: 18 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEM 77
Query: 490 FLCKKKYLSMVIKNN-----ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K + + K++ A T++D TEK ITPMGGFPHYG V +D++MI+GCCMG KK
Sbjct: 78 ----NKKIYKIGKSDQESHKAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKK 133
Query: 545 RVITLRK 551
RV+TLR+
Sbjct: 134 RVVTLRQ 140
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 74/84 (88%)
Query: 345 IPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQF 404
+P+ +F +DEMID IGVTKGKG++GV +RW +LPRKTH+GLRKVACIGAWHP+RV F
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSF 61
Query: 405 TVARAGQKGYHHRTELNKKIYRMG 428
TVARAGQ GYHHRTE+NKKIY++G
Sbjct: 62 TVARAGQNGYHHRTEMNKKIYKIG 85
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+P+ +F +DEMID IGVTKGKG++G
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEG 27
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 589 IPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+P+ +F +DEMID IGVTKGKG++ V
Sbjct: 2 VPIDALFQKDEMIDVIGVTKGKGYEGVV 29
>gi|291391876|ref|XP_002712286.1| PREDICTED: ribosomal protein L3-like [Oryctolagus cuniculus]
Length = 188
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 101/138 (73%), Gaps = 7/138 (5%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTH+GL KVACIGAWH +R F+VA A QKGYHHRTE
Sbjct: 5 TGVTKGKGYKGVTSRWHTKKLPRKTHRGLPKVACIGAWHLARKAFSVAWARQKGYHHRTE 64
Query: 489 ----LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMG 541
++ + YL ++KNN STDYDL++KSI P+GGF HY EV NDF+M+KGC +G
Sbjct: 65 INKKIYKIGQGYLIKDGKLLKNNTSTDYDLSDKSINPLGGFVHYREVTNDFVMLKGCMVG 124
Query: 542 PKKRVITLRKMKLLKKRQ 559
KK+V+TLRK L++ ++
Sbjct: 125 TKKQVLTLRKSLLVQTKR 142
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 71/83 (85%)
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 415
MI+ GVTKGKG+KGVTSRWHTKKLPRKTH+GL KVACIGAWH +R F+VA A QKGYH
Sbjct: 1 MINVTGVTKGKGYKGVTSRWHTKKLPRKTHRGLPKVACIGAWHLARKAFSVAWARQKGYH 60
Query: 416 HRTELNKKIYRMGAGIHTKDGKV 438
HRTE+NKKIY++G G KDGK+
Sbjct: 61 HRTEINKKIYKIGQGYLIKDGKL 83
>gi|183235559|ref|XP_001914254.1| 60S ribosomal protein L3 [Entamoeba histolytica HM-1:IMSS]
gi|169800490|gb|EDS88972.1| 60S ribosomal protein L3, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 350
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 93/123 (75%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M L+ +QKKA +MEIQ+NGGS+A+K+ +A LE+ I V VF DE ID VTKG G
Sbjct: 116 MALVPLKQKKAEVMEIQINGGSIAEKVDFAVSLLEKQISVNSVFGTDECIDVCSVTKGHG 175
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+ GV R+ + LPRKTH+GLRKVAC+GAWHP+RV +TVARAGQ G+ RTE+NKKIYR+
Sbjct: 176 YNGVIKRFGVRHLPRKTHRGLRKVACVGAWHPARVSWTVARAGQMGFFKRTEVNKKIYRL 235
Query: 428 GAG 430
G G
Sbjct: 236 GCG 238
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 117/214 (54%), Gaps = 36/214 (16%)
Query: 90 MTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ 149
MTH++RE R +K+ K ++E VTI+ETPPMV+ G +GY +T GL+ V+AEH++
Sbjct: 1 MTHVIREVKRTNTKLPKDGVLEPVTIIETPPMVVAGFVGYKKTTTGLKPITAVFAEHIAD 60
Query: 150 ECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQS 209
E +RR+ K WYK+ + F ++K+ D K + +R + C V+RVIAHT
Sbjct: 61 EFKRRYTKKWYKNTKNQFAVHTEKYNDVKAKSKRERQIRLIKNRCDVVRVIAHT------ 114
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
QM L+ +QKKA +MEIQ+NGGS+A+K+ +
Sbjct: 115 ------------------------------QMALVPLKQKKAEVMEIQINGGSIAEKVDF 144
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
A LE+ I V VF DE ID VTKG G+ G
Sbjct: 145 AVSLLEKQISVNSVFGTDECIDVCSVTKGHGYNG 178
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 86/117 (73%), Gaps = 3/117 (2%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V R+ + LPRKTH+GLRKVAC+GAWHP+RV +TVARAGQ G+ RTE + KK
Sbjct: 175 GYNGVIKRFGVRHLPRKTHRGLRKVACVGAWHPARVSWTVARAGQMGFFKRTE--VNKKI 232
Query: 496 Y-LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y L NA T++D+TEK ITPMGGFPHYG V NDFLMIKG G ++RVI+LRK
Sbjct: 233 YRLGCGDLKNAKTEFDITEKGITPMGGFPHYGVVKNDFLMIKGTVAGIRRRVISLRK 289
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M L+ +QKKA +MEIQ+NGGS+A+K+ +A LE+ I V VF DE ID
Sbjct: 109 RVIAHTQMALVPLKQKKAEVMEIQINGGSIAEKVDFAVSLLEKQISVNSVFGTDECIDVC 168
Query: 605 GVTKGKGF 612
VTKG G+
Sbjct: 169 SVTKGHGY 176
>gi|379994229|gb|AFD22741.1| ribosomal protein L3, partial [Collodictyon triciliatum]
Length = 209
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 95/134 (70%), Gaps = 2/134 (1%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V SRW KLPRKTHKGLRKVACIGAWHP+RV +TV RAGQKG+ HRTE +
Sbjct: 36 GYKGVISRWGVTKLPRKTHKGLRKVACIGAWHPARVAWTVPRAGQKGFFHRTETNKKIYR 95
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
S K NA+T+ D T K+ITPMGGFPHYG V NDFL++KGC GPKKRV+TLRK L
Sbjct: 96 VGSGEDKQNATTEADGTVKTITPMGGFPHYGPVRNDFLIVKGCVTGPKKRVVTLRKS--L 153
Query: 556 KKRQKKAHLMEIQL 569
+ K+ L +I L
Sbjct: 154 RTPTKRWALEQINL 167
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 81/99 (81%)
Query: 332 DKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 391
+K+ +A E+PI VG VFAQ+E+ID + VTKG G+KGV SRW KLPRKTHKGLRKV
Sbjct: 1 EKVDFALSLFEKPIAVGTVFAQNELIDTMAVTKGHGYKGVISRWGVTKLPRKTHKGLRKV 60
Query: 392 ACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
ACIGAWHP+RV +TV RAGQKG+ HRTE NKKIYR+G+G
Sbjct: 61 ACIGAWHPARVAWTVPRAGQKGFFHRTETNKKIYRVGSG 99
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 265 DKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH--LME 322
+K+ +A E+PI VG VFAQ+E+ID + VTKG G+KG +I+ + K +K H L +
Sbjct: 1 EKVDFALSLFEKPIAVGTVFAQNELIDTMAVTKGHGYKG-VISRWGVTKLPRKTHKGLRK 59
Query: 323 IQLNGGSVADKIAWA 337
+ G ++AW
Sbjct: 60 VACIGAWHPARVAWT 74
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 576 DKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K+ +A E+PI VG VFAQ+E+ID + VTKG G+K +
Sbjct: 1 EKVDFALSLFEKPIAVGTVFAQNELIDTMAVTKGHGYKGVI 41
>gi|269859601|ref|XP_002649525.1| 60S ribosomal protein L3 [Enterocytozoon bieneusi H348]
gi|220067076|gb|EED44544.1| LSU ribosomal protein L3P [Enterocytozoon bieneusi H348]
Length = 329
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 92/117 (78%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKK+H+MEIQ+ GGS+ DK+++ HLE+ I V VF++ E +D IGVTKGKGF+GV
Sbjct: 116 KQKKSHIMEIQVGGGSIDDKVSYGISHLEKEIKVNNVFSKSEFLDTIGVTKGKGFQGVVK 175
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW T LPRKT+KG+RKVACIGA+HPSRV ++VARAGQ G+H RT+ N +Y +G G
Sbjct: 176 RWGTTILPRKTNKGIRKVACIGAFHPSRVMYSVARAGQVGFHRRTQQNLLVYDIGNG 232
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 87/125 (69%), Gaps = 8/125 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V RW T LPRKT+KG+RKVACIGA+HPSRV ++VARAGQ G+H RT+
Sbjct: 163 GVTKGKGFQGVVKRWGTTILPRKTNKGIRKVACIGAFHPSRVMYSVARAGQVGFHRRTQ- 221
Query: 490 FLCKKKYLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ L I N TD+DLT K+I PMGGFPHYG+V ND++M+KGC GP KRV
Sbjct: 222 ----QNLLVYDIGNGKQPIQTDFDLTVKTINPMGGFPHYGQVTNDYIMLKGCVTGPCKRV 277
Query: 547 ITLRK 551
+TLRK
Sbjct: 278 VTLRK 282
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 46/216 (21%)
Query: 90 MTHIVREAD-RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLS 148
MTH++R + R +KI KEI++AVTI+ETPP+V+ GV+GY T GL + A +LS
Sbjct: 1 MTHVIRTKEVRAKNKIQTKEILDAVTIIETPPIVVHGVVGYKNTVKGLERTCIILARNLS 60
Query: 149 QECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQ 208
++ RR +K KA+ K +DLRK +Y T++
Sbjct: 61 EDVIRRMFK-------KAYIPGIK-----------YEDLRKNVEY---------TEDDVN 93
Query: 209 SLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKK-RQKKAHLMEIQLNGGSVADKI 267
L K + I+ N Q++ +K +QKK+H+MEIQ+ GGS+ DK+
Sbjct: 94 ELR-------KSEIIRLICNS----------QVRAIKSIKQKKSHIMEIQVGGGSIDDKV 136
Query: 268 AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
++ HLE+ I V VF++ E +D IGVTKGKGF+G
Sbjct: 137 SYGISHLEKEIKVNNVFSKSEFLDTIGVTKGKGFQG 172
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R+I +++ +K +QKK+H+MEIQ+ GGS+ DK+++ HLE+ I V VF++ E +D
Sbjct: 102 RLICNSQVRAIKSIKQKKSHIMEIQVGGGSIDDKVSYGISHLEKEIKVNNVFSKSEFLDT 161
Query: 604 IGVTKGKGFKECV 616
IGVTKGKGF+ V
Sbjct: 162 IGVTKGKGFQGVV 174
>gi|224105031|ref|XP_002333867.1| predicted protein [Populus trichocarpa]
gi|222838758|gb|EEE77109.1| predicted protein [Populus trichocarpa]
Length = 152
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 101/138 (73%), Gaps = 7/138 (5%)
Query: 448 KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY-LSMVIKNN-- 504
+LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTEL KK Y L + +
Sbjct: 3 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELN--KKIYKLGKCGQESHC 60
Query: 505 ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHL 564
A T+YD TEK ITP+GGFPHYG V D+LMIKGCC+GPKKRV+TLR+ LLK+ + A +
Sbjct: 61 AVTEYDRTEKDITPIGGFPHYGVVKEDYLMIKGCCVGPKKRVVTLRQ-SLLKQTSRVA-M 118
Query: 565 MEIQLNGGSVADKIAWAR 582
EI+L + K R
Sbjct: 119 EEIKLKFIDTSSKFGHGR 136
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/50 (86%), Positives = 48/50 (96%)
Query: 379 KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTELNKKIY++G
Sbjct: 3 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLG 52
>gi|84998982|ref|XP_954212.1| 60S ribosomal protein l3 [Theileria annulata]
gi|65305210|emb|CAI73535.1| 60S ribosomal protein l3, putative [Theileria annulata]
Length = 173
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 96/143 (67%), Gaps = 8/143 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V SR+ +LPRKTH+GLRKVACIG+WHP+RVQF V R GQKGYH RTE
Sbjct: 6 GVTKGHGVKGVVSRYGVTRLPRKTHRGLRKVACIGSWHPARVQFQVPRHGQKGYHKRTER 65
Query: 490 FLCKKKYLSMVIKN---NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
KK + + N N STD DLTEK+ITPMGGFPHYG V DFLM+KGC G KKRV
Sbjct: 66 ---NKKIYRIGLGNCNRNGSTDSDLTEKTITPMGGFPHYGVVREDFLMLKGCIPGTKKRV 122
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
ITLRK L + + L E+ L
Sbjct: 123 ITLRKT--LLPQTSRNSLSEVNL 143
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 65/81 (80%)
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 415
M+D +GVTKG G KGV SR+ +LPRKTH+GLRKVACIG+WHP+RVQF V R GQKGYH
Sbjct: 1 MLDVLGVTKGHGVKGVVSRYGVTRLPRKTHRGLRKVACIGSWHPARVQFQVPRHGQKGYH 60
Query: 416 HRTELNKKIYRMGAGIHTKDG 436
RTE NKKIYR+G G ++G
Sbjct: 61 KRTERNKKIYRIGLGNCNRNG 81
>gi|398021160|ref|XP_003863743.1| ribosomal protein L3, putative, partial [Leishmania donovani]
gi|322501976|emb|CBZ37060.1| ribosomal protein L3, putative, partial [Leishmania donovani]
Length = 106
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 85/105 (80%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDD T+ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARAFPKDDATQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW 143
RPGSK+NKKE+VE VTILE PPMVIVG++GY +TP GL++ TVW
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVIVGIVGYRQTPVGLKTIGTVW 106
>gi|440493542|gb|ELQ75998.1| 60S ribosomal protein L3 [Trachipleistophora hominis]
Length = 384
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 94/136 (69%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++ LK KKAH++E+Q+NGGSVADK+ +A L I +G+VF + E+I GVTKGKG
Sbjct: 170 IETLKLDSKKAHVLEVQVNGGSVADKVQYALSVLNTDISIGEVFNEQELISICGVTKGKG 229
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F GV R+ + LPRK++KG+RKVACIGAWHP+ V TVARAGQ G RT +NKK+ ++
Sbjct: 230 FTGVVKRFGVRILPRKSNKGIRKVACIGAWHPAGVLRTVARAGQMGCFKRTLINKKVLKI 289
Query: 428 GAGIHTKDGKVSVTSR 443
G + + +T +
Sbjct: 290 GNATQSVQTEFDLTDK 305
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 52/274 (18%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVR--- 95
S RK+ APRHGS+ + PKKR+ + R P D+P HLT+F+ YKAGMTHI+R
Sbjct: 2 SCRKYEAPRHGSLAYCPKKRAKQIRQPAAAAPPDNPADKPHLTSFLAYKAGMTHILRITT 61
Query: 96 --EADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRR 153
D+ +I +KE+V+AV++LE P M + G+ Y GL ++ S+
Sbjct: 62 RKSNDKKAREI-RKEVVDAVSVLEAPAMRVYGIRVYTRGVRGLVLADEYVTKNKSECLLA 120
Query: 154 RFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLR----KMAKYCKVIRVIAHTQNQQQS 209
R + +++S K G++ + +DL + KYC V+
Sbjct: 121 RMVRRYHRSALK----------KNAGRENVQEDLNDVRARFEKYCATSNVLVKVL----- 165
Query: 210 LHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAW 269
H +++ LK KKAH++E+Q+NGGSVADK+ +
Sbjct: 166 ---------------------------MHTKIETLKLDSKKAHVLEVQVNGGSVADKVQY 198
Query: 270 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
A L I +G+VF + E+I GVTKGKGF G
Sbjct: 199 ALSVLNTDISIGEVFNEQELISICGVTKGKGFTG 232
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 10/126 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ + LPRK++KG+RKVACIGAWHP+ V TVARAGQ G RT
Sbjct: 223 GVTKGKGFTGVVKRFGVRILPRKSNKGIRKVACIGAWHPAGVLRTVARAGQMGCFKRT-- 280
Query: 490 FLCKKKYLSMVIKNNAS----TDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
L KK L + NA+ T++DLT+K+I P+GGF +YG V ND+LM+KG C+GP KR
Sbjct: 281 -LINKKVLKI---GNATQSVQTEFDLTDKTINPLGGFVNYGMVKNDYLMVKGPCVGPVKR 336
Query: 546 VITLRK 551
V+TL K
Sbjct: 337 VVTLCK 342
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 49/72 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
+V+ K++ LK KKAH++E+Q+NGGSVADK+ +A L I +G+VF + E+I
Sbjct: 163 KVLMHTKIETLKLDSKKAHVLEVQVNGGSVADKVQYALSVLNTDISIGEVFNEQELISIC 222
Query: 605 GVTKGKGFKECV 616
GVTKGKGF V
Sbjct: 223 GVTKGKGFTGVV 234
>gi|431890863|gb|ELK01742.1| 60S ribosomal protein L3 [Pteropus alecto]
Length = 303
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 104/176 (59%), Gaps = 34/176 (19%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KFS PR S + + +AR+ GKVK FPKDD +K VHLTA +GYKAG+T+IV+E +
Sbjct: 2 SHSKFSTPRKFSAS-HLRNAAARNHGKVKSFPKDDLSKTVHLTALLGYKAGVTYIVQEVN 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
PGSK N+KE+VE VTI+ETP MVIVG+
Sbjct: 61 SPGSKENEKEVVETVTIVETPSMVIVGI-------------------------------- 88
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
++S++KA T+ KKWQD GK+ + + M KYC+VIR+I HTQ LHQ +
Sbjct: 89 -HRSKKKALTQYCKKWQDNDGKRQLEKGFNSMKKYCQVIRIIIHTQMHLLPLHQEK 143
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 79/106 (74%), Gaps = 6/106 (5%)
Query: 461 ACIGAWHPSRVQFTVARAGQKGYHHRTELF-LCK--KKYL---SMVIKNNASTDYDLTEK 514
A + AWHP++V F+VA AG KGY RTE+ +CK + YL +I+NNAS DYDL++K
Sbjct: 144 AHLRAWHPAQVAFSVAWAGWKGYRRRTEINKICKIGQGYLIKDGKLIENNASADYDLSDK 203
Query: 515 SITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQK 560
SI P+GGF HYGEV NDF+++KGC MG KKRV+TL K L++ +Q+
Sbjct: 204 SINPLGGFVHYGEVTNDFIILKGCVMGTKKRVLTLSKFLLVQTKQQ 249
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 392 ACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
A + AWHP++V F+VA AG KGY RTE+N KI ++G G KDGK+
Sbjct: 144 AHLRAWHPAQVAFSVAWAGWKGYRRRTEIN-KICKIGQGYLIKDGKL 189
>gi|119630150|gb|EAX09745.1| hCG1794419, isoform CRA_a [Homo sapiens]
Length = 188
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 96/137 (70%), Gaps = 7/137 (5%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTS WHTKKLP KTH+GL KVA IGAWHP V F++A AGQKG HH TE+
Sbjct: 6 GVTKGKGYKGVTSCWHTKKLPHKTHRGLCKVAWIGAWHPDHVAFSMACAGQKGDHHHTEI 65
Query: 490 F--LCK--KKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
+CK + YL S IKNNASTDYDL++KSI +GGF HYGEV N+ +M+KGC +G
Sbjct: 66 NKKICKIDQGYLTEDSKPIKNNASTDYDLSDKSIDLLGGFVHYGEVTNNSVMLKGCVVGT 125
Query: 543 KKRVITLRKMKLLKKRQ 559
KKRV+ L L++ R+
Sbjct: 126 KKRVLILCTSLLVQTRR 142
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 65/82 (79%)
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYH 415
MID IGVTKGKG+KGVTS WHTKKLP KTH+GL KVA IGAWHP V F++A AGQKG H
Sbjct: 1 MIDIIGVTKGKGYKGVTSCWHTKKLPHKTHRGLCKVAWIGAWHPDHVAFSMACAGQKGDH 60
Query: 416 HRTELNKKIYRMGAGIHTKDGK 437
H TE+NKKI ++ G T+D K
Sbjct: 61 HHTEINKKICKIDQGYLTEDSK 82
>gi|324516200|gb|ADY46457.1| 60S ribosomal protein L3 [Ascaris suum]
Length = 204
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 76/83 (91%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK++K R+KKAH+MEIQ+NGG+V +K+ WA++HLE+ + V VFAQDEMIDCIGVTKGKG
Sbjct: 16 MKVMKHREKKAHIMEIQVNGGTVPEKVDWAKEHLEKQVAVDSVFAQDEMIDCIGVTKGKG 75
Query: 368 FKGVTSRWHTKKLPRKTHKGLRK 390
FKGVTSRWHTKKLPRKTHKGLRK
Sbjct: 76 FKGVTSRWHTKKLPRKTHKGLRK 98
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 70/130 (53%), Gaps = 42/130 (32%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTHKGLRK
Sbjct: 69 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRK------------------------------ 98
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
K N T+YD+TEKSI PMGGFPHYG VN DF+MI+GCC+G KKR ITL
Sbjct: 99 ------------KRNGGTEYDITEKSINPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITL 146
Query: 550 RKMKLLKKRQ 559
RK +++ ++
Sbjct: 147 RKSLIVQTKR 156
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 68/114 (59%), Gaps = 36/114 (31%)
Query: 190 MAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQK 249
M KYC IRVIAHTQ MK++K R+K
Sbjct: 1 MKKYCSKIRVIAHTQ------------------------------------MKVMKHREK 24
Query: 250 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
KAH+MEIQ+NGG+V +K+ WA++HLE+ + V VFAQDEMIDCIGVTKGKGFKG
Sbjct: 25 KAHIMEIQVNGGTVPEKVDWAKEHLEKQVAVDSVFAQDEMIDCIGVTKGKGFKG 78
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 60/71 (84%)
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMID 602
K RVI +MK++K R+KKAH+MEIQ+NGG+V +K+ WA++HLE+ + V VFAQDEMID
Sbjct: 7 KIRVIAHTQMKVMKHREKKAHIMEIQVNGGTVPEKVDWAKEHLEKQVAVDSVFAQDEMID 66
Query: 603 CIGVTKGKGFK 613
CIGVTKGKGFK
Sbjct: 67 CIGVTKGKGFK 77
>gi|429963937|gb|ELA45935.1| hypothetical protein VCUG_02577 [Vavraia culicis 'floridensis']
Length = 385
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 95/136 (69%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
+ ++K KKAH++E+Q+NGG+V DK+ +A + + +G+VF + E+I GVTKGKG
Sbjct: 171 INMIKLDSKKAHVLEVQVNGGTVEDKVQYALSIFNKDVKIGEVFDEQELISICGVTKGKG 230
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F GV R+ + LPRK++KG+RKVACIGAWHP+ V TVARAGQ G RT +NKK+ ++
Sbjct: 231 FTGVVKRFGVRILPRKSNKGIRKVACIGAWHPAGVLRTVARAGQMGSFKRTLMNKKVLKI 290
Query: 428 GAGIHTKDGKVSVTSR 443
G + + + +T++
Sbjct: 291 GNAMQSVQTEFDLTNK 306
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 148/287 (51%), Gaps = 45/287 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVR--- 95
S RK+ APRHGS+ + PK+R+ + R P+D PT HLT+F+ YKAGMTHI+R
Sbjct: 2 SCRKYEAPRHGSLAYCPKRRAKQIRQPSPAPPRDCPTDKPHLTSFLAYKAGMTHILRITT 61
Query: 96 --EADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRR 153
D+ +I +KE+V+AV+ILE P M + G+ Y + GL + +++S+
Sbjct: 62 RKSNDKKAREI-RKEVVDAVSILEAPEMRVYGIRLYAKGVRGLVLKEEYVTKNMSECLLA 120
Query: 154 RFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQN 213
R + +++S K K + ++ + + AQ + V++V+ HT+
Sbjct: 121 RMVRRYHRSGLKKNFKTKENAEENVN-EIGAQFEKYYGTSGVVVKVLVHTK--------- 170
Query: 214 QQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 273
+N + DS KKAH++E+Q+NGG+V DK+ +A
Sbjct: 171 -------------INMIKLDS--------------KKAHVLEVQVNGGTVEDKVQYALSI 203
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKA 318
+ + +G+VF + E+I GVTKGKGF G + +++L ++ K
Sbjct: 204 FNKDVKIGEVFDEQELISICGVTKGKGFTGVVKRFGVRILPRKSNKG 250
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 82/123 (66%), Gaps = 4/123 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ + LPRK++KG+RKVACIGAWHP+ V TVARAGQ G RT
Sbjct: 224 GVTKGKGFTGVVKRFGVRILPRKSNKGIRKVACIGAWHPAGVLRTVARAGQMGSFKRT-- 281
Query: 490 FLCKKKYLSM-VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
L KK L + + T++DLT K+I PMGGF +YG V ND+LM+KG C+GP KRVIT
Sbjct: 282 -LMNKKVLKIGNAMQSVQTEFDLTNKTINPMGGFINYGMVKNDYLMVKGPCVGPVKRVIT 340
Query: 549 LRK 551
L K
Sbjct: 341 LCK 343
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
+V+ K+ ++K KKAH++E+Q+NGG+V DK+ +A + + +G+VF + E+I
Sbjct: 164 KVLVHTKINMIKLDSKKAHVLEVQVNGGTVEDKVQYALSIFNKDVKIGEVFDEQELISIC 223
Query: 605 GVTKGKGFKECV 616
GVTKGKGF V
Sbjct: 224 GVTKGKGFTGVV 235
>gi|398022540|ref|XP_003864432.1| ribosomal protein L3, putative, partial [Leishmania donovani]
gi|322502667|emb|CBZ37750.1| ribosomal protein L3, putative, partial [Leishmania donovani]
Length = 98
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 79/97 (81%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHG +GF P+KRS + RG+ + FPKDD T+ HLT+F+ +KAGMTHIVR+ D
Sbjct: 2 SHCKFEHPRHGHLGFLPRKRSRQIRGRARAFPKDDATQKPHLTSFMVFKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHG 135
RPGSK+NKKE+VE VTILE PPMVIVG++GY +TP G
Sbjct: 62 RPGSKVNKKEVVEPVTILEAPPMVIVGIVGYRQTPVG 98
>gi|169626513|ref|XP_001806656.1| hypothetical protein SNOG_16548 [Phaeosphaeria nodorum SN15]
gi|111054968|gb|EAT76088.1| hypothetical protein SNOG_16548 [Phaeosphaeria nodorum SN15]
Length = 91
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 74/83 (89%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKFEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPM 121
RPG+K++KKEIVEA T++ETPP+
Sbjct: 62 RPGAKLHKKEIVEACTVIETPPV 84
>gi|414588496|tpg|DAA39067.1| TPA: hypothetical protein ZEAMMB73_537924, partial [Zea mays]
Length = 124
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 82/103 (79%)
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWY 160
S+++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS+E RRRFYKNW
Sbjct: 22 SSELHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYKNWC 81
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
KS++KAFTK + K+++ GKK I L KM KY VIRVIAHT
Sbjct: 82 KSKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHT 124
>gi|449708742|gb|EMD48143.1| 60S ribosomal protein L3, partial [Entamoeba histolytica KU27]
Length = 121
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 85/119 (71%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+ F+P+KR + R V FPKD+ + HLT F+G+KAGMTH++RE
Sbjct: 2 SHRKFEAPRHGSLAFHPRKRVHKVRATVSAFPKDNAAEKPHLTGFLGFKAGMTHVIREVK 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
R +K+ K ++E VTI+ETPPMV+ G +GY +T GL+ V+AEH++ E +RR+ K
Sbjct: 62 RTNTKLPKDGVLEPVTIIETPPMVVAGFVGYKKTTTGLKPITAVFAEHIADEFKRRYTK 120
>gi|161899261|ref|XP_001712857.1| ribosomal protein L3 [Bigelowiella natans]
gi|75756351|gb|ABA27245.1| ribosomal protein L3 [Bigelowiella natans]
Length = 370
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 81/114 (71%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KK + E + GGS K+ + + + I + +F ++++ID IG+TKG G KGV SRW
Sbjct: 158 KKKYFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRW 217
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
+LPRKTH+GLRKVACIG W PSRV +T++RAGQKGYH RT NKKIY++G+
Sbjct: 218 GITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS 271
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 85/146 (58%), Gaps = 19/146 (13%)
Query: 421 NKKIYRMGAGIHTKD-----------GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 469
NKKIY + + H D G V SRW +LPRKTH+GLRKVACIG W PS
Sbjct: 184 NKKIY-INSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPS 242
Query: 470 RVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNAS----TDYDLTEKSITPMGGFPHY 525
RV +T++RAGQKGYH RT L KK + + N S + D KS+ MGGF +
Sbjct: 243 RVAWTISRAGQKGYHKRT---LFNKKIYKIGSEENFSYYSNSLSDSIVKSVNCMGGFKKF 299
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRK 551
G +NND+L+IKG G KR I LRK
Sbjct: 300 GFINNDYLIIKGSMTGSSKRPILLRK 325
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 69/307 (22%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPV------HLTAFIGYKAGMTH 92
SHRKF PR GS+GF PKKRS R FP K + +++ F K TH
Sbjct: 2 SHRKFEHPRIGSLGFLPKKRSNR------IFPSSKTYKEIIHIYYPYISQFASLKVASTH 55
Query: 93 IVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECR 152
++R + SK + I++ VT++E PP+ +VG+ Y + L KT+ + +
Sbjct: 56 VLRICNIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI-------KLQ 108
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
R N +S+ +F D L+ + K+ + R + T + S
Sbjct: 109 RGL--NLDQSKDISF--------DSQFFTNFTYSLQFIIKHSVIFRFLCCTFIKTNS--- 155
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
++KK+ + E + GGS K+ + +
Sbjct: 156 ------------------------------MIKKK----YFFETDIIGGSPKMKLEFWLK 181
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH--LMEIQLNGGSV 330
+ I + +F ++++ID IG+TKG G KG +++ + + +K H L ++ G
Sbjct: 182 LNNKKIYINSIFHENDIIDAIGITKGHGTKG-VVSRWGITRLPRKTHRGLRKVACIGPWT 240
Query: 331 ADKIAWA 337
++AW
Sbjct: 241 PSRVAWT 247
>gi|190895944|gb|ACE96485.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895946|gb|ACE96486.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895948|gb|ACE96487.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895950|gb|ACE96488.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895952|gb|ACE96489.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895954|gb|ACE96490.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895958|gb|ACE96492.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895960|gb|ACE96493.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895962|gb|ACE96494.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895964|gb|ACE96495.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895966|gb|ACE96496.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895968|gb|ACE96497.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895970|gb|ACE96498.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895972|gb|ACE96499.1| casein kinase II regulatory subunit [Populus tremula]
gi|190895974|gb|ACE96500.1| casein kinase II regulatory subunit [Populus tremula]
Length = 99
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 71/86 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTKGKG++GV +
Sbjct: 14 KQKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDVIGVTKGKGYEGVVT 73
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHP 399
RW +LPRKTH+GLRKVACIGAWHP
Sbjct: 74 RWGVTRLPRKTHRGLRKVACIGAWHP 99
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGVTK
Sbjct: 7 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDVIGVTK 64
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 65 GKGYEGVV 72
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 237 SHVQMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGV 295
+H Q++ +K +QKKAHLMEIQ+NGG++A K+ +A E+ +P+ VF +DEMID IGV
Sbjct: 3 AHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDVIGV 62
Query: 296 TKGKGFKG 303
TKGKG++G
Sbjct: 63 TKGKGYEG 70
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHP 468
G+ G V +RW +LPRKTH+GLRKVACIGAWHP
Sbjct: 61 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHP 99
>gi|190895956|gb|ACE96491.1| casein kinase II regulatory subunit [Populus tremula]
Length = 99
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 70/86 (81%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++A K+ + E+ +P+ VF +DEMID IGVTKGKG++GV +
Sbjct: 14 KQKKAHLMEIQVNGGTIAQKVDFGYGFFEKQVPIDAVFQKDEMIDVIGVTKGKGYEGVVT 73
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHP 399
RW +LPRKTH+GLRKVACIGAWHP
Sbjct: 74 RWGVTRLPRKTHRGLRKVACIGAWHP 99
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++A K+ + E+ +P+ VF +DEMID IGVTK
Sbjct: 7 IRKMKGLK--QKKAHLMEIQVNGGTIAQKVDFGYGFFEKQVPIDAVFQKDEMIDVIGVTK 64
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 65 GKGYEGVV 72
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 237 SHVQMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGV 295
+H Q++ +K +QKKAHLMEIQ+NGG++A K+ + E+ +P+ VF +DEMID IGV
Sbjct: 3 AHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFGYGFFEKQVPIDAVFQKDEMIDVIGV 62
Query: 296 TKGKGFKG 303
TKGKG++G
Sbjct: 63 TKGKGYEG 70
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHP 468
G+ G V +RW +LPRKTH+GLRKVACIGAWHP
Sbjct: 61 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHP 99
>gi|40641603|emb|CAE54281.1| putative ribosomal protein [Triticum aestivum]
Length = 98
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 69/84 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTKGKG++GV +
Sbjct: 13 KQKKAHLMEIQINGGTIADKVDYGYSFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVT 72
Query: 374 RWHTKKLPRKTHKGLRKVACIGAW 397
RW +LPRKTH+GLRKVACIGAW
Sbjct: 73 RWGVTRLPRKTHRGLRKVACIGAW 96
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGVTK
Sbjct: 6 IRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYSFFEKEVPIDAVFQKDEMIDIIGVTK 63
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 64 GKGYEGVV 71
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 237 SHVQMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGV 295
+H Q++ +K +QKKAHLMEIQ+NGG++ADK+ + E+ +P+ VF +DEMID IGV
Sbjct: 2 AHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYSFFEKEVPIDAVFQKDEMIDIIGV 61
Query: 296 TKGKGFKG 303
TKGKG++G
Sbjct: 62 TKGKGYEG 69
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAW 466
G+ G V +RW +LPRKTH+GLRKVACIGAW
Sbjct: 60 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAW 96
>gi|68011480|ref|XP_671157.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56487082|emb|CAH93715.1| hypothetical protein PB000142.00.0 [Plasmodium berghei]
Length = 139
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 69/93 (74%), Gaps = 6/93 (6%)
Query: 462 CIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK---NNASTDYDLTEKSITP 518
CIGAWHP+RVQF V R GQKGY HRTE KK + +K NNASTD D+TEK ITP
Sbjct: 1 CIGAWHPARVQFQVPRHGQKGYFHRTER---NKKIYRIGLKKDKNNASTDADITEKKITP 57
Query: 519 MGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
MGGFPHYG VN DF+++KGC G KKR ITLRK
Sbjct: 58 MGGFPHYGVVNEDFILLKGCISGTKKRPITLRK 90
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 31/36 (86%)
Query: 393 CIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
CIGAWHP+RVQF V R GQKGY HRTE NKKIYR+G
Sbjct: 1 CIGAWHPARVQFQVPRHGQKGYFHRTERNKKIYRIG 36
>gi|389860647|ref|YP_006362887.1| 50S ribosomal protein L3P [Thermogladius cellulolyticus 1633]
gi|388525551|gb|AFK50749.1| 50S ribosomal protein L3P [Thermogladius cellulolyticus 1633]
Length = 396
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 174/412 (42%), Gaps = 107/412 (25%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFP-----------------KDDPTKPVHLTA 82
HRK APRHGS+G P+KR++ +V+ +P K + K L A
Sbjct: 3 HRKLEAPRHGSLGVRPRKRASELSVRVRTWPAKTWIELLEERYGSEVEKLNVVKRPTLLA 62
Query: 83 FIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTV 142
F YKAGMTH + DRP + + K + VT L+ PP+V++G LR++
Sbjct: 63 FPVYKAGMTHAMVVEDRPHTPLTGKPVFTPVTALDAPPIVVLG----------LRTY--- 109
Query: 143 WAEHLSQECRRRFYKNWYKSRQKAFTKASKKW--QDKLGKKTIAQDLRKMAKYCKVIRVI 200
+S+ + Y ++S A + +K+ + K +D+ + KY +R +
Sbjct: 110 ----VSENGSLKTYGEAWRSPVNAVAEVFEKFYKDNPFFKDAATKDIVR--KYLSGLRKV 163
Query: 201 AHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG 260
H K P K +ES ++ L
Sbjct: 164 NH-------------GLVKPDPSGEYGFKFIETDYESRLKQIL----------------- 193
Query: 261 GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHL 320
G V A ++ I V G G +KK +
Sbjct: 194 -------------------TGDVKAVSLIVSTIPVLSGIG--------------KKKPEI 220
Query: 321 MEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKL 380
EI++ GG + + ++A + + V VF + +++D IGVTKGKGF+GV R+ K+L
Sbjct: 221 FEIRVGGGKIDEITSYAEKVTGGYVSVTDVFIEGQLVDVIGVTKGKGFQGVIKRFGVKEL 280
Query: 381 PR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMGA 429
PR K KG RK IGA P + +AGQ G+H RTELNK+I ++GA
Sbjct: 281 PRWHKHRKGSRK---IGARSPGFGTMSEPPQAGQTGFHRRTELNKRILKIGA 329
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K+LPR K KG RK IGA P + +AGQ G+H R
Sbjct: 261 GVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGARSPGFGTMSEPPQAGQTGFHRR 317
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TEL K+ ++K AS + P GGF HYG + +++I G +G KR
Sbjct: 318 TEL---NKR----ILKIGASG------LEVVPKGGFLHYGLIYGPYILIDGSVIGTVKRA 364
Query: 547 ITLR 550
+ LR
Sbjct: 365 LLLR 368
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK + EI++ GG + + ++A + + V VF + +++D IGVTKGKGF+ +
Sbjct: 215 KKKPEIFEIRVGGGKIDEITSYAEKVTGGYVSVTDVFIEGQLVDVIGVTKGKGFQGVI 272
>gi|218884488|ref|YP_002428870.1| 50S ribosomal protein L3P [Desulfurococcus kamchatkensis 1221n]
gi|218766104|gb|ACL11503.1| 50S ribosomal protein L3P [Desulfurococcus kamchatkensis 1221n]
Length = 396
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 178/412 (43%), Gaps = 107/412 (25%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDD------------------PTKPVHL 80
HRK APRHGS+G P+KR+ +VK +P+ +PV L
Sbjct: 2 GHRKLHAPRHGSLGVRPRKRAEELTPRVKRWPEKSWFDILVERLGNEAASQGVVARPV-L 60
Query: 81 TAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFK 140
F YKAGMTH + DRP + + KE+ VTIL+ PP+V++ G+R++
Sbjct: 61 LGFPVYKAGMTHAIIVEDRPNTPVTGKEVFTPVTILDAPPIVVL----------GVRTY- 109
Query: 141 TVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMA-KYCKVIRV 199
+ E + + +++ Y + KAF + G I ++ + KY +R
Sbjct: 110 -IIDEEGYLKTKGEAWRSPYDAIAKAFEELYA------GIPLIGISVKDVVRKYLHGLRK 162
Query: 200 IAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLN 259
+ H K +P K +S ES ++ L
Sbjct: 163 VNH-------------GLVKPEPSSEYGFKFVAESSESELRDAL---------------- 193
Query: 260 GGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
G +AD + + IPV + IG +KK
Sbjct: 194 SGEIADV-----RVIASTIPV---------LSGIG--------------------KKKPE 219
Query: 320 LMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKK 379
++E+++ GGS+ +++ +A L + VF + + +D IGVTKGKGF+GV R+ K+
Sbjct: 220 IIELKIGGGSIDERLKYAEGILGGYVRASDVFMEGQFVDVIGVTKGKGFQGVVKRFGVKE 279
Query: 380 LPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMG 428
LPR K KG RK IGA P + +AGQ G+H RTE NK+I +MG
Sbjct: 280 LPRWHKHRKGSRK---IGARSPGFGTMSEPPQAGQMGFHRRTEYNKRILKMG 328
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K+LPR K KG RK IGA P + +AGQ G+H R
Sbjct: 261 GVTKGKGFQGVVKRFGVKELPRWHKHRKGSRK---IGARSPGFGTMSEPPQAGQMGFHRR 317
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L M L IT GGF HYG V ++M+KG GP KR+
Sbjct: 318 TE---YNKRILKM----------GLNGLEITIEGGFLHYGLVYGPYIMLKGTVFGPAKRM 364
Query: 547 ITLR 550
+ LR
Sbjct: 365 LILR 368
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++E+++ GGS+ +++ +A L + VF + + +D IGVTKGKGF+ V
Sbjct: 215 KKKPEIIELKIGGGSIDERLKYAEGILGGYVRASDVFMEGQFVDVIGVTKGKGFQGVV 272
>gi|297527410|ref|YP_003669434.1| 50S ribosomal protein L3 [Staphylothermus hellenicus DSM 12710]
gi|297256326|gb|ADI32535.1| ribosomal protein L3 [Staphylothermus hellenicus DSM 12710]
Length = 395
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 145/314 (46%), Gaps = 94/314 (29%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPK------------DDPT------KPVHL 80
HRK SAPRHGS+G P+KR+A+ +++ +P D+ T KPV L
Sbjct: 2 GHRKHSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEATDKGISPKPV-L 60
Query: 81 TAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLRSF 139
+ YKAGM+H + DRP + + KEI VTIL+ PP++I+G+ GY P HGL SF
Sbjct: 61 LGYAAYKAGMSHAIIIDDRPHTFTSGKEIAVPVTILDAPPILILGIRGYKIHPMHGLLSF 120
Query: 140 KTVW---AEHLSQ-----------------ECRRRFYKNWYK----------SRQKAFTK 169
VW E L + + R++ K K + + F
Sbjct: 121 GEVWRSPVEALKEVYEKIYSDNPFVNLGIKDVVRKYLKGLRKVNPGLVKPDPNNEYGFKF 180
Query: 170 ASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNK 229
W++KL ++ A DL IRVIA T P+ S + K
Sbjct: 181 LENNWEEKL-QRLKAADLAD-------IRVIAST-----------------IPVLSGIGK 215
Query: 230 TQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEM 289
+P+ ++EI++ GG++ D+IA+A + L I V QVF + +
Sbjct: 216 KKPE-------------------IIEIKVGGGTLNDRIAYAEKLLGNYITVDQVFREGQF 256
Query: 290 IDCIGVTKGKGFKG 303
ID IGVTKGKGF+G
Sbjct: 257 IDIIGVTKGKGFQG 270
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%), Gaps = 6/118 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ GG++ D+IA+A + L I V QVF + + ID IGVTKGKGF+GV R
Sbjct: 215 KKKPEIIEIKVGGGTLNDRIAYAEKLLGNYITVDQVFREGQFIDIIGVTKGKGFQGVIKR 274
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMGA 429
+ K+LPR K KG RK IG+ P + + GQ G+H RTE NK+I ++G
Sbjct: 275 FGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQTGFHRRTEYNKRIIKIGV 329
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ GG++ D+IA+A + L I V QVF + + ID IGVTKGKGF+ +
Sbjct: 215 KKKPEIIEIKVGGGTLNDRIAYAEKLLGNYITVDQVFREGQFIDIIGVTKGKGFQGVI 272
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K+LPR K KG RK IG+ P + + GQ G+H R
Sbjct: 261 GVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQTGFHRR 317
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE Y +IK + ITP GGF YG V ++M+ G +GP+KR+
Sbjct: 318 TE-------YNKRIIKIGVNG------WEITPKGGFLGYGIVYGPYIMVYGSTIGPRKRL 364
Query: 547 ITLR 550
+ LR
Sbjct: 365 LVLR 368
>gi|119602067|gb|EAW81661.1| hCG22885, isoform CRA_b [Homo sapiens]
Length = 169
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 80/106 (75%), Gaps = 7/106 (6%)
Query: 471 VQFTVARAGQKGYHHRTEL----FLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFP 523
++F+VARAGQKGYHHRTE+ + + YL +IKNNASTDYDL++KSI P+GGF
Sbjct: 28 IKFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFV 87
Query: 524 HYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
HYGEV NDF+M+KGC +G KKRV+TLRK L++ +++ ++++
Sbjct: 88 HYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKF 133
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 402 VQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
++F+VARAGQKGYHHRTE+NKKIY++G G KDGK+
Sbjct: 28 IKFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKL 64
>gi|126465913|ref|YP_001041022.1| 50S ribosomal protein L3P [Staphylothermus marinus F1]
gi|212288413|sp|A3DNA4.1|RL3_STAMF RecName: Full=50S ribosomal protein L3P
gi|126014736|gb|ABN70114.1| LSU ribosomal protein L3P [Staphylothermus marinus F1]
Length = 395
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 80/307 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFP------------------KDDPTKPVHL 80
HRK+SAPRHGS+G P+KR+A+ +++ +P K KPV L
Sbjct: 2 GHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-L 60
Query: 81 TAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLRSF 139
++ YKAGM+H + DRP + + KEI VT+L+ PP++I+G+ GY P HGL SF
Sbjct: 61 LGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSF 120
Query: 140 KTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRV 199
VW + E + Y+ Y F LG K I + KY K +R
Sbjct: 121 GEVWRSPV--EALKELYEKIYS--DNPFI--------NLGAKDIVR------KYLKGLRK 162
Query: 200 I--------AHTQ--------NQQQSLHQNQQSHTKD-------QPIQSNVNKTQPDSHE 236
+ H++ N ++ L + + + D P+ S + K +P+
Sbjct: 163 VNPGLVKPEPHSEYGFKFLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPE--- 219
Query: 237 SHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVT 296
++EI++ GG+++++I +A + L + V QVF + + ID IGVT
Sbjct: 220 ----------------IIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVT 263
Query: 297 KGKGFKG 303
KGKGF+G
Sbjct: 264 KGKGFQG 270
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ GG+++++I +A + L + V QVF + + ID IGVTKGKGF+GV R
Sbjct: 215 KKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKR 274
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMG 428
+ K+LPR K KG RK IG+ P + + GQ G+H RTE NK+I ++G
Sbjct: 275 FGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG 328
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ GG+++++I +A + L + V QVF + + ID IGVTKGKGF+ +
Sbjct: 215 KKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVI 272
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K+LPR K KG RK IG+ P + + GQ G+H R
Sbjct: 261 GVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRR 317
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE Y +IK + +TP GGF YG V ++M+ G +GP+KR+
Sbjct: 318 TE-------YNKRIIK------IGINGWEVTPKGGFLGYGIVYGPYIMLHGSIIGPRKRL 364
Query: 547 ITLR 550
+ LR
Sbjct: 365 LVLR 368
>gi|193084205|gb|ACF09869.1| ribosomal protein L3 [uncultured marine group II euryarchaeote
KM3-136-D10]
Length = 342
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 60/282 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S P+ GSM F P+KR+ R G+VK +P + V + F GYKAGM+H++ + PGS
Sbjct: 5 SKPKRGSMAFGPRKRARRQTGRVKSWPSNG-NGEVKIQGFAGYKAGMSHVLIRDENPGSP 63
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWA--EHLSQE----CRRRFYK 157
+EI +AVTI+ETPP+ I+G+ GY +T +G ++ WA E +++ RR +
Sbjct: 64 SAGQEIRKAVTIVETPPLQILGIRGYHQTYYGKQTAGEAWASGEEIAEAQPNLVRRVPAR 123
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
N + + + T +++ + + C+V R+I T Q S
Sbjct: 124 NTHDTEEHI---------------TALKEMAEKGQLCEV-RLIVST----------QPSK 157
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
K P K ++ME+ LNG + +IAWA + L Q
Sbjct: 158 VKSIPT-------------------------KTPNIMELGLNGSDITSRIAWAEERLGQT 192
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKK 317
+ V VF+ +D I VTKGKG++G + +KLL + K
Sbjct: 193 LKVSDVFSNGNDLDVIAVTKGKGWQGSIKRWGIKLLSHKNSK 234
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ-------- 315
++IA A+ +L + +P +E I + K KG++ ++L+ Q
Sbjct: 106 GEEIAEAQPNLVRRVPARNTHDTEEHITAL---KEMAEKGQLCEVRLIVSTQPSKVKSIP 162
Query: 316 -KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
K ++ME+ LNG + +IAWA + L Q + V VF+ +D I VTKGKG++G R
Sbjct: 163 TKTPNIMELGLNGSDITSRIAWAEERLGQTLKVSDVFSNGNDLDVIAVTKGKGWQGSIKR 222
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
W K L K K R+ +G + V+ T+ +AGQ GYH RTE NKK+ R+ +
Sbjct: 223 WGIKLLSHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKKVIRISS 277
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K L K K R+ +G + V+ T+ +AGQ GYH RTE Y VI+
Sbjct: 222 RWGIKLLSHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQTGYHQRTE-------YNKKVIR 274
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
+S D D +TP GGF YGEV ND+++++G GP KR++ R+ +K Q
Sbjct: 275 I-SSPDED----EVTPDGGFLRYGEVTNDYIIVQGSLPGPSKRLLRFRESVRPRKTQDPV 329
Query: 563 HLMEI 567
+ +
Sbjct: 330 DITYV 334
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 546 VITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIG 605
+++ + K+ K ++ME+ LNG + +IAWA + L Q + V VF+ +D I
Sbjct: 150 IVSTQPSKVKSIPTKTPNIMELGLNGSDITSRIAWAEERLGQTLKVSDVFSNGNDLDVIA 209
Query: 606 VTKGKGFKECV 616
VTKGKG++ +
Sbjct: 210 VTKGKGWQGSI 220
>gi|315229856|ref|YP_004070292.1| 50S ribosomal protein L3e (L3p) [Thermococcus barophilus MP]
gi|315182884|gb|ADT83069.1| LSU ribosomal protein L3e (L3p) [Thermococcus barophilus MP]
Length = 346
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 131/264 (49%), Gaps = 52/264 (19%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K S PR GS+ + P+KR+ +++ +P+++ V L F GYKAGMTHI+ DRPG
Sbjct: 3 KISKPRRGSLAYSPRKRAKSIVPRIRKWPQEEE---VRLLGFAGYKAGMTHILMIDDRPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
KEI VTI+ETPPMV+ G+ Y + GL + VW +L+ + +RR K
Sbjct: 60 L-TKGKEIFMPVTIVETPPMVVFGIRAYKQGYLGLETATEVWIPNLNPDLKRRI-----K 113
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ K + + + +Q KLG+ +DL K + +V R + HTQ +
Sbjct: 114 TLPKNYDEGA--FQQKLGE---LEDLVKSGEIVEV-RALVHTQPR--------------- 152
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
L K +KK +ME + G SV DK A+ ++ L + I
Sbjct: 153 ----------------------LIKLKKKPEVMEYAVGGKSVEDKFAYLKEKLGKEIRAK 190
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
+V + E++D I VTKGKG +G +
Sbjct: 191 EVLKEGELLDVIAVTKGKGTQGPV 214
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
L K +KK +ME + G SV DK A+ ++ L + I +V + E++D I VTKGKG +G
Sbjct: 153 LIKLKKKPEVMEYAVGGKSVEDKFAYLKEKLGKEIRAKEVLKEGELLDVIAVTKGKGTQG 212
Query: 371 VTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW K K + R V +G WHP+RV +TV +AGQ G+HHRTE NK++ +G
Sbjct: 213 PVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIG 272
Query: 429 AG--IHTKDGKVSVTSR 443
+ K+ +T +
Sbjct: 273 ENGFLELNGNKIEITPK 289
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V +G WHP+RV +TV +AGQ G+HHRTE K+ ++ I N + + + IT
Sbjct: 233 RHVGNLGPWHPARVMWTVPQAGQMGFHHRTEF---NKRLIA--IGENGFLELNGNKIEIT 287
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG V +DFLMI G G KR++ +R
Sbjct: 288 PKGGFPHYGIVRSDFLMIAGSVPGAIKRIVRVR 320
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L K +KK +ME + G SV DK A+ ++ L + I +V + E++D I VTKGKG
Sbjct: 153 LIKLKKKPEVMEYAVGGKSVEDKFAYLKEKLGKEIRAKEVLKEGELLDVIAVTKGKG 209
>gi|119873281|ref|YP_931288.1| 50S ribosomal protein L3P [Pyrobaculum islandicum DSM 4184]
gi|212288410|sp|A1RVG3.1|RL3_PYRIL RecName: Full=50S ribosomal protein L3P
gi|119674689|gb|ABL88945.1| LSU ribosomal protein L3P [Pyrobaculum islandicum DSM 4184]
Length = 342
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 161/406 (39%), Gaps = 126/406 (31%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
+A K + PR GSMG YP+KR+A +V+ +P+ + KP L F YKAGM H V
Sbjct: 3 RAMGLKINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVV 61
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGL-RSFKTVWAEHLSQECRRR 154
DRP S + KE+V+AVT+L+ PP+ I G Y P +G RS VWA L RR
Sbjct: 62 EDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRR- 120
Query: 155 FYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
T K DK KK + + + +
Sbjct: 121 -----------VLTLPEKVDVDKQMKKV----------------------EEFKDVAVDV 147
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQH 273
++ QP S + K P+ L+EI + G SV ++I +A
Sbjct: 148 RALVATQPHLSGIGKKTPE-------------------LLEIPIGGVPSVDERIKFAVSL 188
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADK 333
L + + +VF +++D I VTKGKG++G
Sbjct: 189 LGKTVSPKEVFTAGQLVDVIAVTKGKGYQG------------------------------ 218
Query: 334 IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVAC 393
+I GVT + RWH K KG R+
Sbjct: 219 ----------------------VIKRFGVT-------ILPRWH------KHRKGHRRTGT 243
Query: 394 IGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM---GAGIHTKDG 436
IG P+ V FT R GQ G+H RTE NK+I ++ GA I K G
Sbjct: 244 IGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAEITPKSG 288
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 24/115 (20%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ V FT R GQ G+H RTE Y
Sbjct: 225 VTILPRWH------KHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTE-------YN 270
Query: 498 SMVIK--NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+IK +N + ITP GF HYG V +++I+G G +KR++ LR
Sbjct: 271 KRIIKIGDNGA--------EITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLR 317
>gi|347524198|ref|YP_004781768.1| 50S ribosomal protein L3 [Pyrolobus fumarii 1A]
gi|343461080|gb|AEM39516.1| ribosomal protein L3 [Pyrolobus fumarii 1A]
Length = 346
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 132/265 (49%), Gaps = 48/265 (18%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK APR GS+G P+KR++R K++ +P+ KP+ L AF+ YKAGMTH+ DRP
Sbjct: 4 RKKHAPRRGSLGLRPRKRASRLIPKIRSWPEVKSEKPLPL-AFLAYKAGMTHVFMIDDRP 62
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPH-GLRSFKTVWAEHLSQECRRRFYKNW 159
GS KEI VTILE PPMV++ V Y P+ GL + WA ++ +++ +
Sbjct: 63 GSTTEGKEIFVPVTILEAPPMVVLAVRVYGYDPNIGLYTLTEAWAR--PEDLVQQYNLDI 120
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
Y+ K F + Q K I + L K+ +R+IA TQ +
Sbjct: 121 YRVLPKTFRVPDPEQQ----LKKIEELLPKVYD----VRIIAATQPR------------- 159
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGS-VADKIAWARQHLEQPI 278
+ ++K +PD L+EI++ GGS + ++ +A L +
Sbjct: 160 ---LVGGLSKKKPD-------------------LIEIKIGGGSGIEERFQYAASILGKTF 197
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF + +++D I VTKGKGF+G
Sbjct: 198 TVRDVFQEGQLVDVIAVTKGKGFQG 222
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 13/121 (10%)
Query: 315 QKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+KK L+EI++ GGS + ++ +A L + V VF + +++D I VTKGKGF+GV
Sbjct: 166 KKKPDLIEIKIGGGSGIEERFQYAASILGKTFTVRDVFQEGQLVDVIAVTKGKGFQGVIK 225
Query: 374 RWHTKKLPR--KTHKGLRKVAC----IGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
R+ K+LP+ K KG R++ IGA P V + GQ G+H RTE NK+I ++
Sbjct: 226 RFGVKELPKWHKHRKGSRRIGARSPGIGAISP------VPQPGQMGFHRRTEYNKRILKI 279
Query: 428 G 428
G
Sbjct: 280 G 280
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 25/117 (21%)
Query: 440 VTSRWHTKKLPR--KTHKGLRKVAC----IGAWHPSRVQFTVARAGQKGYHHRTELFLCK 493
V R+ K+LP+ K KG R++ IGA P V + GQ G+H RTE
Sbjct: 223 VIKRFGVKELPKWHKHRKGSRRIGARSPGIGAISP------VPQPGQMGFHRRTE---YN 273
Query: 494 KKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
K+ L I +N +TP GGF HYG V + ++M+ G GP KR I LR
Sbjct: 274 KRILK--IGDNGW--------EVTPAGGFLHYGIVRSTYVMLAGSVPGPAKRPIVLR 320
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 559 QKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK L+EI++ GGS + ++ +A L + V VF + +++D I VTKGKGF+ +
Sbjct: 166 KKKPDLIEIKIGGGSGIEERFQYAASILGKTFTVRDVFQEGQLVDVIAVTKGKGFQGVI 224
>gi|134045079|ref|YP_001096565.1| 50S ribosomal protein L3P [Methanococcus maripaludis C5]
gi|166233156|sp|A4FVY2.1|RL3_METM5 RecName: Full=50S ribosomal protein L3P
gi|132662704|gb|ABO34350.1| LSU ribosomal protein L3P [Methanococcus maripaludis C5]
Length = 334
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 57/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P S N
Sbjct: 8 PRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNN 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 65 GQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRK----------- 113
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T A K+ +K A L + + +R I HT P +
Sbjct: 114 -LTLAKKE------EKKTADALDAVVEKATEVRAIVHT-----------------NPKTT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++EI++ G SVA+++A+A++ L + + +G VF
Sbjct: 150 GIPKKKPE-------------------VVEIRIGGSSVAERLAYAKEILGKTLAIGDVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E+ID + +TKGKGF+G +
Sbjct: 191 AGEIIDTLAITKGKGFQGSV 210
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 102/236 (43%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + +G VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ G SVA+++A+A++ L + + +G VF E+ID + +TKGKGF+ V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSV 210
>gi|193084317|gb|ACF09976.1| ribosomal protein L3 [uncultured marine group II euryarchaeote
KM3-130-D10]
Length = 358
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 135/277 (48%), Gaps = 34/277 (12%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMG+ P+KR+ R G++ +P D ++ V + F G+KAGMTH++ + P S
Sbjct: 5 SKPRRGSMGYSPRKRAIRQYGRISSWPDSDSSE-VRVQGFAGWKAGMTHVLVRDNNPHSP 63
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
++E+ +AVT++E PPM ++ + GY TP+G+++ WA+
Sbjct: 64 SARQEVRKAVTVVEAPPMCVLAIRGYRMTPYGMQTAGEAWAD----------VDGGPDGL 113
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
F S+ D+ + RK +K R+ + N + ++ Q+ D
Sbjct: 114 TPRFANQSRGEHDR-------DEGRKPSKRGG--RIPSRNGNSPDAAMESLQN--ADLCE 162
Query: 224 QSNVNKTQPDSHESHVQMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
+ TQP L+K K +ME+ L GG + K+ WAR+ L I +
Sbjct: 163 IRLIVSTQP---------ALVKSVTSKTPEIMEVALVGGDNSSKMEWARERLGGTISLDD 213
Query: 283 VFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKK 317
V+ + ID +GVTKGKG++G + +KLL + K
Sbjct: 214 VYQTGQEIDVVGVTKGKGWQGSIKRWGIKLLSHKNSK 250
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 66/112 (58%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K +ME+ L GG + K+ WAR+ L I + V+ + ID +GVTKGKG++G RW
Sbjct: 180 KTPEIMEVALVGGDNSSKMEWARERLGGTISLDDVYQTGQEIDVVGVTKGKGWQGSIKRW 239
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
K L K K R+ +G + V+ T+ +AGQ GYH RTELNK+I R+
Sbjct: 240 GIKLLSHKNSKRRRQGGNMGDFGTRYVRKTIRQAGQVGYHQRTELNKRILRI 291
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 388 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTS 442
+ +VA +G + S++++ R G T +Y+ G G+ G
Sbjct: 184 IMEVALVGGDNSSKMEWARERLGG------TISLDDVYQTGQEIDVVGVTKGKGWQGSIK 237
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K L K K R+ +G + V+ T+ +AGQ GYH RTEL K+ L I
Sbjct: 238 RWGIKLLSHKNSKRRRQGGNMGDFGTRYVRKTIRQAGQVGYHQRTEL---NKRILR--IS 292
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
N +D ITP GGF +YGEV N +++I+G GP KR++ R+
Sbjct: 293 NPEESD-------ITPAGGFLNYGEVTNPYMIIQGSLPGPAKRMLRFRE 334
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R+I + L+K K +ME+ L GG + K+ WAR+ L I + V+ + ID
Sbjct: 164 RLIVSTQPALVKSVTSKTPEIMEVALVGGDNSSKMEWARERLGGTISLDDVYQTGQEIDV 223
Query: 604 IGVTKGKGFKECV 616
+GVTKGKG++ +
Sbjct: 224 VGVTKGKGWQGSI 236
>gi|380481419|emb|CCF41852.1| 60S ribosomal protein L3, partial [Colletotrichum higginsianum]
Length = 83
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 63/72 (87%)
Query: 49 GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKE 108
GS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ DRPG+K NKKE
Sbjct: 12 GSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKANKKE 71
Query: 109 IVEAVTILETPP 120
+VEAV+I++TPP
Sbjct: 72 VVEAVSIIDTPP 83
>gi|170516812|gb|ACB15214.1| ribosomal protein L3 [uncultured marine group II euryarchaeote
DeepAnt-15E7]
Length = 358
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 149/316 (47%), Gaps = 54/316 (17%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMG+ P+KR+ R G++ +P+ D + + + F G+KAGMTH++ + P S
Sbjct: 5 SKPRRGSMGYSPRKRANRQYGRISSWPESDSAE-IRVQGFAGWKAGMTHLLVRDNNPNSS 63
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVW------AEHLSQEC--RRRF 155
++E+ +AVT++E PPM ++ V GY TP+G+++ W E LS + R
Sbjct: 64 SAQQEVRKAVTVVEAPPMSVLAVRGYRMTPYGMQTAGEAWFNSDSGPEGLSPRLANQSRG 123
Query: 156 YKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQ 215
++ + R K +A + G A + + C+V R+I T Q +L ++
Sbjct: 124 ERDAEEGR-KPSKRAGRIPSRGEGSPDAALEALREVDLCEV-RLIVST---QPALVKSVS 178
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
S T + +ME+ L GG A K+ WA + L
Sbjct: 179 SKTPE--------------------------------IMEVALAGGDNASKLDWAEERLG 206
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLMEIQLNGGSVAD- 332
I + V+ + ID +GVTKGKG++G + +KLL + K + GG++ D
Sbjct: 207 GAITLDDVYETGQEIDVVGVTKGKGWQGAIKRWGIKLLSHKNSKR-----RRQGGNMGDF 261
Query: 333 KIAWARQHLEQPIPVG 348
+ R+ + Q VG
Sbjct: 262 GTGYVRKTIRQAGQVG 277
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 66/112 (58%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K +ME+ L GG A K+ WA + L I + V+ + ID +GVTKGKG++G RW
Sbjct: 180 KTPEIMEVALAGGDNASKLDWAEERLGGAITLDDVYETGQEIDVVGVTKGKGWQGAIKRW 239
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
K L K K R+ +G + V+ T+ +AGQ GYH+RTELNK+I R+
Sbjct: 240 GIKLLSHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQVGYHNRTELNKRILRV 291
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 12/108 (11%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K L K K R+ +G + V+ T+ +AGQ GYH+RTEL K+ L +
Sbjct: 238 RWGIKLLSHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQVGYHNRTEL---NKRILR--VS 292
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
N +D ITP GGF +YGEV N +++I+G GP KR++ R
Sbjct: 293 NPEESD-------ITPSGGFLNYGEVTNPYMIIQGSLPGPSKRILRFR 333
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R+I + L+K K +ME+ L GG A K+ WA + L I + V+ + ID
Sbjct: 164 RLIVSTQPALVKSVSSKTPEIMEVALAGGDNASKLDWAEERLGGAITLDDVYETGQEIDV 223
Query: 604 IGVTKGKGFKECV 616
+GVTKGKG++ +
Sbjct: 224 VGVTKGKGWQGAI 236
>gi|242398279|ref|YP_002993703.1| 50S ribosomal protein L3P [Thermococcus sibiricus MM 739]
gi|259709744|sp|C6A159.1|RL3_THESM RecName: Full=50S ribosomal protein L3P
gi|242264672|gb|ACS89354.1| 50S ribosomal protein L3P [Thermococcus sibiricus MM 739]
Length = 359
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 282 QVFAQ--DEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 339
+VF Q E+ D + + + + L + +KK +ME + G S+ +K + ++
Sbjct: 137 EVFQQKLGELEDLVKTGEVVELRALVATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKE 196
Query: 340 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP 399
L + I VG++ + E++D + VTKGKG +G RW K K KG RKVA IG WHP
Sbjct: 197 KLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGVKLTSHKDSKGRRKVATIGPWHP 256
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMGA-GIHTKDG-KVSVT 441
+RV +TV RAGQ G+HHRTE NK++ R+G G T +G K+ +T
Sbjct: 257 ARVMWTVPRAGQMGFHHRTEFNKRLLRIGENGKLTLNGEKIEIT 300
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKVA IG WHP+RV +TV RAGQ G+HHRTE K+ L I
Sbjct: 231 RWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEF---NKRLLR--IG 285
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
N + + ITP GGFPHYG V NDF+MI G G KR+I +R
Sbjct: 286 ENGKLTLNGEKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMR 333
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 43/265 (16%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ S PR GS+ + P+KR+ +++ +P++ + V + F GYKAGMTH++ D PG
Sbjct: 3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQE---CRRRFYKN 158
KEI VTI+E PP+++ G+ Y GL + V E +R
Sbjct: 60 L-TKGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLENYPSKRAKNVT 118
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+YK ++ K + +++ ++ + +L + K +V+ + A
Sbjct: 119 FYKLLERRIKTLPKNYTEEVFQQKLG-ELEDLVKTGEVVELRA----------------- 160
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+ TQP L + +KK +ME + G S+ +K + ++ L + I
Sbjct: 161 --------LVATQP----------WLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEI 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG++ + E++D + VTKGKG +G
Sbjct: 203 RVGEILQEGELLDIVAVTKGKGTQG 227
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L + +KK +ME + G S+ +K + ++ L + I VG++ + E++D + VTKGKG
Sbjct: 168 LARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKG 224
>gi|150402715|ref|YP_001330009.1| 50S ribosomal protein L3P [Methanococcus maripaludis C7]
gi|166233157|sp|A6VHD2.1|RL3_METM7 RecName: Full=50S ribosomal protein L3P
gi|150033745|gb|ABR65858.1| ribosomal protein L3 [Methanococcus maripaludis C7]
Length = 334
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 126/264 (47%), Gaps = 57/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K S PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S N +E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRK------- 113
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
T K+ +K A L + + +RVI HT
Sbjct: 114 -----LTLVKKE------EKKTADALDAVLEKATEVRVIVHT-----------------N 145
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
P + + K +P+ ++EI++ G SVA+++A+A++ L + + +
Sbjct: 146 PKTTGIPKKKPE-------------------VVEIRIGGSSVAERLAYAKEILGKTLAIS 186
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF E+ID + +TKGKGF+G +
Sbjct: 187 DVFEAGEIIDTLAITKGKGFQGSV 210
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI K +KK ++EI++ G SVA+++A+A++ L + + + VF E+ID +
Sbjct: 139 RVIVHTNPKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTL 198
Query: 605 GVTKGKGFKECV 616
+TKGKGF+ V
Sbjct: 199 AITKGKGFQGSV 210
>gi|8572163|gb|AAF77033.1|AF247852_1 ribosomal protein L3 [Caenorhabditis remanei]
Length = 91
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 124 VGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTI 183
GV GY++TP G R+ T+WAEHLS+E RRRFY NW KS++KAFTK +KKWQD+ GKK I
Sbjct: 1 AGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLI 60
Query: 184 AQDLRKMAKYCKVIRVIAHTQ 204
D K+ KYC IRVIAHTQ
Sbjct: 61 EADFAKLKKYCSSIRVIAHTQ 81
>gi|14600545|ref|NP_147062.1| 50S ribosomal protein L3 [Aeropyrum pernix K1]
gi|6685859|sp|Q9YFM2.1|RL3_AERPE RecName: Full=50S ribosomal protein L3P
gi|5103618|dbj|BAA79139.1| 50S ribosomal protein L3P [Aeropyrum pernix K1]
Length = 344
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 133/268 (49%), Gaps = 60/268 (22%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK APR GS+GF P+KR++R +VK +P+ D KPV L AF+GY+AGMTH+ DRP
Sbjct: 4 RKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRP 62
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPH-GLRSFKTVWAEHLSQ-ECRRRFYKN 158
G + KEI VTI+ETPPM + V Y P+ G S WA+ + E +RR
Sbjct: 63 GRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI--- 119
Query: 159 WYKSRQKAF--TKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
S +F K K +++L K A+D +R+IA +Q +
Sbjct: 120 ---STLGSFDTDKMLKSLEERLDK---AED----------VRLIAASQPK---------- 153
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKI-AWARQHLE 275
+ ++K +PD L+EI++ G S K+ +A+ L
Sbjct: 154 ------LAGGLSKKKPD-------------------LLEIKVGGVSDVTKLFDYAKDVLG 188
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
I V VF + +++D I VTKGKGF+G
Sbjct: 189 NLIAVNDVFEEGQLVDVIAVTKGKGFQG 216
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 7/114 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKI-AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+KK L+EI++ G S K+ +A+ L I V VF + +++D I VTKGKGF+GV
Sbjct: 160 KKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIK 219
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQF-TVARAGQKGYHHRTELNKKI 424
RW K+LPR K KG R+ IGA R F +AGQ G+H RTE NK+I
Sbjct: 220 RWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRI 270
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 440 VTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQF-TVARAGQKGYHHRTELFLCKKKY 496
V RW K+LPR K KG R+ IGA R F +AGQ G+H RTE K
Sbjct: 217 VIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEY----NKR 269
Query: 497 LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ M+ D +TP GGF YG V + F+M+ G G KR I +R
Sbjct: 270 ILMI---------DDDGYKVTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMR 314
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 559 QKKAHLMEIQLNGGSVADKI-AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK L+EI++ G S K+ +A+ L I V VF + +++D I VTKGKGF+ +
Sbjct: 160 KKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVI 218
>gi|171185278|ref|YP_001794197.1| 50S ribosomal protein L3P [Pyrobaculum neutrophilum V24Sta]
gi|212288414|sp|B1YD88.1|RL3_THENV RecName: Full=50S ribosomal protein L3P
gi|170934490|gb|ACB39751.1| ribosomal protein L3 [Pyrobaculum neutrophilum V24Sta]
Length = 338
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 151/395 (38%), Gaps = 133/395 (33%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR+A +V+ +P+ + KP L F YKAGM H V DRP
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHG--LRSFKTVWAEHLSQECRRRFYKNW 159
S + KE+V VT+L+ PP+ I G Y P RS VWA L RR
Sbjct: 63 SPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRR------ 116
Query: 160 YKSRQKAFTKASKKWQDKLGKKT-----IAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
T K DK KK +A D+R +
Sbjct: 117 ------VLTLPEKADVDKQMKKVEEFKDVAVDVRAL------------------------ 146
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQH 273
QP S + K P+ L+EI + G SV ++I +A
Sbjct: 147 ---VATQPHLSGIGKKTPE-------------------LLEIPIGGVPSVDERIKFAVSL 184
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADK 333
L + + +VF +++D I VTKGKG++G
Sbjct: 185 LGKTVSPKEVFTAGQLVDVIAVTKGKGYQG------------------------------ 214
Query: 334 IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVAC 393
+I GVT + RWH K KG R+
Sbjct: 215 ----------------------VIKRFGVT-------ILPRWH------KHRKGHRRTGT 239
Query: 394 IGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
IG P+ + FT R GQ G+H RTE NK++ ++G
Sbjct: 240 IGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIG 273
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ + FT R GQ G+H RTE K +
Sbjct: 221 VTILPRWH------KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEY----NKRV 269
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ N A ITP GF HYG + +++I+G G KKR++ LR
Sbjct: 270 VKIGDNGAE---------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313
>gi|336121494|ref|YP_004576269.1| 50S ribosomal protein L3 [Methanothermococcus okinawensis IH1]
gi|334856015|gb|AEH06491.1| ribosomal protein L3 [Methanothermococcus okinawensis IH1]
Length = 333
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 126/264 (47%), Gaps = 58/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GS+ F P+KR+ R K++ +P D+ V L AF YKAG TH + + + P
Sbjct: 4 KRNRPRRGSLAFSPRKRAKRPVPKIRSWPNDEK---VRLQAFPVYKAGTTHALVKENNPK 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S ++++ VT+LE P + + G+ Y +T GL++ VWAE+L +E R+
Sbjct: 61 SPNAEQDVFTPVTVLEAPDITVAGIRVYEKTTKGLKTLTEVWAENLDKELNRKIT----- 115
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
K K I + L ++A +R I HT
Sbjct: 116 -------------TPKEPKANI-EKLDEVADKIAEVRAIVHT-----------------N 144
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
P +N+ K +P+ ++EI++ G ++++K+A+A++ L + + +
Sbjct: 145 PKNTNLPKKKPE-------------------IIEIRIGGNNISEKLAYAKEILGKTLSIN 185
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF E ID I +TKGKGF+G +
Sbjct: 186 DVFTDGEFIDTIAITKGKGFQGPV 209
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G ++++K+A+A++ L + + + VF E ID I +TKGKGF+G R
Sbjct: 152 KKKPEIIEIRIGGNNISEKLAYAKEILGKTLSINDVFTDGEFIDTIAITKGKGFQGPVKR 211
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + +KG+ R IG W P RV +TV AGQ GYH RTE NK+I ++G
Sbjct: 212 WGIKIQFGKHRNKGVGRHTGSIGPWTPKRVMWTVPMAGQMGYHQRTEYNKRILKIG 267
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 15/110 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + +KG+ R IG W P RV +TV AGQ GYH RTE K+ L
Sbjct: 211 RWGIKIQFGKHRNKGVGRHTGSIGPWTPKRVMWTVPMAGQMGYHQRTEY---NKRILK-- 265
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I NN + I P GGF HYG+V N+++++KG GP KR++ LR
Sbjct: 266 IGNNG--------EEIVPKGGFLHYGDVKNNYVLVKGSVQGPAKRMVVLR 307
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV-- 616
+KK ++EI++ G ++++K+A+A++ L + + + VF E ID I +TKGKGF+ V
Sbjct: 152 KKKPEIIEIRIGGNNISEKLAYAKEILGKTLSINDVFTDGEFIDTIAITKGKGFQGPVKR 211
Query: 617 ---------HSNASCAKYFKSLG 630
H N ++ S+G
Sbjct: 212 WGIKIQFGKHRNKGVGRHTGSIG 234
>gi|330508498|ref|YP_004384926.1| 50S ribosomal protein L3 [Methanosaeta concilii GP6]
gi|328929306|gb|AEB69108.1| ribosomal protein L3 [Methanosaeta concilii GP6]
Length = 334
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 56/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ + P+KR+ +++ + ++D + + F GYKAGMTH++ DRP S
Sbjct: 7 PRRGSLAYSPRKRAKSEVPRIRSWLEEDKAR---IAGFAGYKAGMTHVMMIDDRPRSLTE 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VT+LE PPM +V V Y GLR +WAE+LS E R
Sbjct: 64 GMEISTPVTVLEVPPMNVVAVRAYESYNGGLRPAGELWAENLSPELSR------------ 111
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
A T K + T DL + +RV+ HT + + S
Sbjct: 112 AMTVPKKT------RGTAPGDLVALGDDIADVRVLVHT----------------NPTLVS 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K P+ +ME+ +NGGS+ D++++A+ L Q +P+ VF
Sbjct: 150 GIPKKVPE-------------------IMEMPINGGSMNDRLSFAQTLLGQQVPISSVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
+++D VTKGKG +G +
Sbjct: 191 LGDLMDTSAVTKGKGTQGPV 210
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K +ME+ +NGGS+ D++++A+ L Q +P+ VF +++D VTKGKG +G R
Sbjct: 153 KKVPEIMEMPINGGSMNDRLSFAQTLLGQQVPISSVFELGDLMDTSAVTKGKGTQGPVRR 212
Query: 375 WHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RK + +R V +G WHP+ + + V + GQ GYH RTE NK++ +G
Sbjct: 213 WGIAMAKRKHARTGKVRHVGNLGPWHPAHISWRVPQLGQMGYHQRTEYNKRLMFIG 268
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 13/94 (13%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
+R V +G WHP+ + + V + GQ GYH RTE K L M I + S I
Sbjct: 228 VRHVGNLGPWHPAHISWRVPQLGQMGYHQRTEY----NKRL-MFIGTDGS--------KI 274
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
TP GGFP YG + N +++IKG GP KR++ +R
Sbjct: 275 TPDGGFPGYGVIKNQYILIKGSVPGPIKRLVRMR 308
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K +ME+ +NGGS+ D++++A+ L Q +P+ VF +++D VTKGKG + V
Sbjct: 153 KKVPEIMEMPINGGSMNDRLSFAQTLLGQQVPISSVFELGDLMDTSAVTKGKGTQGPV 210
>gi|390370692|ref|XP_003731872.1| PREDICTED: 60S ribosomal protein L3-like, partial
[Strongylocentrotus purpuratus]
Length = 64
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS RHRGK K FPKDD +KPVHLT F+GYKAGMTHIVR+ D
Sbjct: 1 SHRKFSAPRHGSLGFLPRKRSRRHRGKAKAFPKDDKSKPVHLTCFLGYKAGMTHIVRDVD 60
Query: 99 RPGS 102
RPGS
Sbjct: 61 RPGS 64
>gi|414587229|tpg|DAA37800.1| TPA: hypothetical protein ZEAMMB73_342493 [Zea mays]
Length = 78
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 59/67 (88%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FP+DDP KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDPKKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKIN 105
+PGS ++
Sbjct: 62 KPGSSMS 68
>gi|159905511|ref|YP_001549173.1| 50S ribosomal protein L3P [Methanococcus maripaludis C6]
gi|226730533|sp|A9A9B8.1|RL3_METM6 RecName: Full=50S ribosomal protein L3P
gi|159887004|gb|ABX01941.1| ribosomal protein L3 [Methanococcus maripaludis C6]
Length = 334
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 125/264 (47%), Gaps = 57/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K S PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S N +E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRK------- 113
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
T K+ +K A L + + +R I HT
Sbjct: 114 -----LTLVKKE------EKKTADALDAVLEKATEVRAIVHT-----------------N 145
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
P + + K +P+ ++EI++ G SVA+++A+A++ L + + +
Sbjct: 146 PKTTGIPKKKPE-------------------VVEIRIGGSSVAERLAYAKEILGKTLAIS 186
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF E+ID + +TKGKGF+G +
Sbjct: 187 DVFEAGEIIDTLAITKGKGFQGSV 210
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+ V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSV 210
>gi|432328989|ref|YP_007247133.1| archaeal ribosomal protein L3 [Aciduliprofundum sp. MAR08-339]
gi|432135698|gb|AGB04967.1| archaeal ribosomal protein L3 [Aciduliprofundum sp. MAR08-339]
Length = 340
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 130/280 (46%), Gaps = 63/280 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFP--KDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
PR GSM +YP+KR+A +++ +P +D P + F GYKAGMTH+ R +
Sbjct: 7 PRRGSMAYYPRKRAASPVPRIRTWPDIEDGP----RIQGFAGYKAGMTHVFTVDWRKHTT 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
+EI VT++E PPM + GV Y T +GLRS VW E+L +E RRF
Sbjct: 63 TAGQEIWTPVTVIEVPPMKVAGVRFYERTIYGLRSIGEVWDENLDRELSRRF-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
K++ +++ I D+ IR+I HTQ + +
Sbjct: 115 -----PLPKEYSEEVALSRIKGDIED-------IRLIVHTQPR----------------L 146
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
S + K PD +MEI++ GG+V ++ +A L + I
Sbjct: 147 VSGIPKKAPD-------------------IMEIRVGGGTVEERKDYALNLLGKEIKFSDF 187
Query: 284 FAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLM 321
++ + +D + +TKGKGF+G + +KLL ++ +K M
Sbjct: 188 KSEGKFVDVVAITKGKGFQGHVKRFGVKLLHQKNRKHRRM 227
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ K L +K K R + +G WHP V++TV +AGQ GYH RTE KY+ V +
Sbjct: 211 RFGVKLLHQKNRKHRRMIGTLGPWHPDWVRYTVPQAGQMGYHQRTEYNKRIIKYVDFVEE 270
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
N ITP GGFPHYGEV N +++I G GP KR+I R
Sbjct: 271 NGERK----LAMDITPEGGFPHYGEVRNPYVLIHGSVPGPAKRLIRFR 314
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 67/110 (60%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K +MEI++ GG+V ++ +A L + I ++ + +D + +TKGKGF+G R
Sbjct: 152 KKAPDIMEIRVGGGTVEERKDYALNLLGKEIKFSDFKSEGKFVDVVAITKGKGFQGHVKR 211
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKI 424
+ K L +K K R + +G WHP V++TV +AGQ GYH RTE NK+I
Sbjct: 212 FGVKLLHQKNRKHRRMIGTLGPWHPDWVRYTVPQAGQMGYHQRTEYNKRI 261
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 545 RVITLRKMKLLKKRQKKA-HLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R+I + +L+ KKA +MEI++ GG+V ++ +A L + I ++ + +D
Sbjct: 137 RLIVHTQPRLVSGIPKKAPDIMEIRVGGGTVEERKDYALNLLGKEIKFSDFKSEGKFVDV 196
Query: 604 IGVTKGKGFK 613
+ +TKGKGF+
Sbjct: 197 VAITKGKGFQ 206
>gi|14591535|ref|NP_143617.1| 50S ribosomal protein L3P [Pyrococcus horikoshii OT3]
gi|6094075|sp|O59418.1|RL3_PYRHO RecName: Full=50S ribosomal protein L3P
gi|3258212|dbj|BAA30895.1| 362aa long hypothetical 50S ribosomal protein L3 [Pyrococcus
horikoshii OT3]
Length = 362
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAW 336
+ Q+E +G + +GE++ ++ L Q KK +ME + G SV +K +
Sbjct: 137 YTQEEFEQKLGALEDMIKEGEIVEVRALVSTQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 196
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
++ L + I VG+V + E++D I VTKGKG +G RW K K KG RKV IG
Sbjct: 197 IKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGP 256
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 257 WHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 288
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTEL K+ ++ I
Sbjct: 234 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL---NKRLIA--IG 288
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N D E ITP GGFPHYG V DF+MI G G KR+I +R ++ +KK
Sbjct: 289 ENGKLVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPA--IRPPKKKP 346
Query: 563 HLMEIQLNGGSVADK 577
+ Q+ SV K
Sbjct: 347 PVQRPQITYVSVESK 361
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 127/266 (47%), Gaps = 42/266 (15%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GS+ F P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG
Sbjct: 3 KIHRPRKGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
N KEI VTI+ETPP+ + G+ Y + GL + V + Y K
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETAGEVIVPDFELDN----YTPSKK 114
Query: 162 SRQKAFTKASKKWQDKLGKK--TIAQDLRKMAKYCKVIRVIAHTQNQ-QQSLHQNQQSHT 218
+ + FT + LG++ T+ +D +TQ + +Q L +
Sbjct: 115 GKGRKFT-----FYQFLGRRIATLPKD---------------YTQEEFEQKLGALEDMIK 154
Query: 219 KDQPIQSN-VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
+ + ++ + TQP + K +KK +ME + G SV +K + ++ L +
Sbjct: 155 EGEIVEVRALVSTQP----------WVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKE 204
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I VG+V + E++D I VTKGKG +G
Sbjct: 205 IRVGEVLKEGELLDVIAVTKGKGTQG 230
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K +KK +ME + G SV +K + ++ L + I VG+V + E++D I VTKGKG
Sbjct: 173 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKG 227
>gi|18313001|ref|NP_559668.1| 50S ribosomal protein L3P [Pyrobaculum aerophilum str. IM2]
gi|42559672|sp|Q8ZW52.1|RL3_PYRAE RecName: Full=50S ribosomal protein L3P
gi|18160502|gb|AAL63850.1| ribosomal protein L3 [Pyrobaculum aerophilum str. IM2]
Length = 338
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 159/401 (39%), Gaps = 126/401 (31%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR+A +V+ +P+ + KP L F YKAGM H V DRP
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGL-RSFKTVWAEHLSQECRRRFYKNW 159
S + KE+V+AVT+L+ PP+ + G Y P +G R+ VWA L + R
Sbjct: 63 SPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHR------ 116
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
T K DK KK ++ R +A + +
Sbjct: 117 ------VLTLPEKLDVDKQLKKV--EEFRDVAVDVRAL--------------------VA 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
QP S + K P+ L+EI + G SV ++I +A L + +
Sbjct: 149 TQPHLSGIGKKTPE-------------------LLEIPIGGVPSVDERINFAISLLGKTV 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
VF +++D I VTKGKG++G
Sbjct: 190 SPKDVFTPGQLVDVIAVTKGKGYQG----------------------------------- 214
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+I GVT + RWH K KG R+ IG
Sbjct: 215 -----------------VIKRFGVT-------ILPRWH------KHRKGHRRTGTIGPQA 244
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRM---GAGIHTKDG 436
P+ V FT R GQ G+H RTE NK++ ++ GA I K G
Sbjct: 245 PA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAEITPKSG 284
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ V FT R GQ G+H RTE K L
Sbjct: 221 VTILPRWH------KHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEY----NKRL 269
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ +N A ITP GFPHYG V +++I+G G +KR++ LR
Sbjct: 270 LKIGENGAE---------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313
>gi|332158024|ref|YP_004423303.1| 50S ribosomal protein L3P [Pyrococcus sp. NA2]
gi|331033487|gb|AEC51299.1| 50S ribosomal protein L3P [Pyrococcus sp. NA2]
Length = 362
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAW 336
+ Q++ +G + +GE++ ++ L Q KK +ME + G SV +K +
Sbjct: 137 YTQEDFEQKLGTLEDMIKEGEIVEVRALVSTQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 196
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
++ L + I VG+V + E++D I VTKGKG +G RW K K KG RKV IG
Sbjct: 197 IKERLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGP 256
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 257 WHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 288
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 76/135 (56%), Gaps = 7/135 (5%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTEL K+ ++ I
Sbjct: 234 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL---NKRLIA--IG 288
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N D E ITP GGFPHYG V +DF+MI G GP KR+I +R ++ +KK
Sbjct: 289 ENGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGPVKRIIRVRPA--IRPPKKKP 346
Query: 563 HLMEIQLNGGSVADK 577
+ Q+ SV K
Sbjct: 347 PVQRPQITYVSVESK 361
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 122/262 (46%), Gaps = 42/262 (16%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG N
Sbjct: 7 PRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGLT-N 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KEI VTI+ETPP+ I GV Y + GL + V + Y K R +
Sbjct: 63 GKEIFMPVTIIETPPLRIFGVRAYRQGYLGLETATEVIVPDFELDN----YVPSKKGRGR 118
Query: 166 AFTKASKKWQDKLGKK--TIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
FT + LG++ T+ +D +TQ + + K+ I
Sbjct: 119 KFT-----FYQFLGRRIATLPKD---------------YTQEDFEQKLGTLEDMIKEGEI 158
Query: 224 QS--NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+ TQP + K +KK +ME + G SV +K + ++ L + I VG
Sbjct: 159 VEVRALVSTQP----------WVIKLKKKPEVMEYAIGGTSVEEKFNYIKERLGKEIRVG 208
Query: 282 QVFAQDEMIDCIGVTKGKGFKG 303
+V + E++D I VTKGKG +G
Sbjct: 209 EVLKEGELLDVIAVTKGKGTQG 230
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K +KK +ME + G SV +K + ++ L + I VG+V + E++D I VTKGKG
Sbjct: 173 KLKKKPEVMEYAIGGTSVEEKFNYIKERLGKEIRVGEVLKEGELLDVIAVTKGKG 227
>gi|193083756|gb|ACF09443.1| ribosomal protein L3 [uncultured marine group II euryarchaeote
SAT1000-15-B12]
Length = 358
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 147/309 (47%), Gaps = 40/309 (12%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMG+ P+KR+ R G++ +P D ++ V + F G+KAGMTH++ + P S
Sbjct: 5 SKPRRGSMGYSPRKRAIRQYGRISSWPDSDSSE-VRVQGFAGWKAGMTHVLVRDNNPHSP 63
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
++E+ +AVT++E PPM ++ + GY T +G+++ WA+
Sbjct: 64 SARQEVRKAVTVVEAPPMCVLAIRGYRMTSYGMQTAGEAWADA----------DGGPDGL 113
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
F S+ D+ + RK +K R+ + N + ++ Q+ D
Sbjct: 114 MPRFANQSQGEHDR-------DEGRKPSKRGG--RIPSRNGNSPDAAMESLQN--ADLCE 162
Query: 224 QSNVNKTQPDSHESHVQMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
+ TQP L+K K +ME+ L GG + K+ WAR+ L I +
Sbjct: 163 IRLIVSTQP---------ALVKSVPSKTPEIMEVALVGGDNSSKLEWAREKLGGEISLDD 213
Query: 283 VFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLMEIQLNGGSVAD-KIAWARQ 339
V+ + ID +G+TKGKG++G + +KLL + K + GG++ D + R+
Sbjct: 214 VYQTGQEIDVVGITKGKGWQGSIKRWGIKLLSHKNSKR-----RRQGGNMGDFGTGYVRK 268
Query: 340 HLEQPIPVG 348
+ Q VG
Sbjct: 269 TIRQAGQVG 277
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K +ME+ L GG + K+ WAR+ L I + V+ + ID +G+TKGKG++G RW
Sbjct: 180 KTPEIMEVALVGGDNSSKLEWAREKLGGEISLDDVYQTGQEIDVVGITKGKGWQGSIKRW 239
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
K L K K R+ +G + V+ T+ +AGQ GYH RTELNK+I R+
Sbjct: 240 GIKLLSHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQVGYHQRTELNKRILRI 291
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 24/179 (13%)
Query: 378 KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIH 432
K +P KT + + +VA +G + S++++ + G + L+ +Y+ G GI
Sbjct: 175 KSVPSKTPE-IMEVALVGGDNSSKLEWAREKLGGE-----ISLDD-VYQTGQEIDVVGIT 227
Query: 433 TKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLC 492
G RW K L K K R+ +G + V+ T+ +AGQ GYH RTEL
Sbjct: 228 KGKGWQGSIKRWGIKLLSHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQVGYHQRTEL--- 284
Query: 493 KKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
K+ L I N +D ITP GGF +YGEV N +++I+G GP KR++ R+
Sbjct: 285 NKRILR--ISNPEESD-------ITPAGGFLNYGEVTNPYMIIQGSLPGPAKRMLRFRE 334
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R+I + L+K K +ME+ L GG + K+ WAR+ L I + V+ + ID
Sbjct: 164 RLIVSTQPALVKSVPSKTPEIMEVALVGGDNSSKLEWAREKLGGEISLDDVYQTGQEIDV 223
Query: 604 IGVTKGKGFKECV 616
+G+TKGKG++ +
Sbjct: 224 VGITKGKGWQGSI 236
>gi|45359106|ref|NP_988663.1| 50S ribosomal protein L3P [Methanococcus maripaludis S2]
gi|74553576|sp|Q6LX10.1|RL3_METMP RecName: Full=50S ribosomal protein L3P
gi|45047981|emb|CAF31099.1| LSU Ribosomal protein L3P [Methanococcus maripaludis S2]
Length = 334
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 123/260 (47%), Gaps = 57/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P S +
Sbjct: 8 PRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNS 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 65 SQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRK----------- 113
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T A K+ +K L + + +R I HT P +
Sbjct: 114 -LTLAKKE------EKKTVDALDAVLEKATEVRAIVHT-----------------NPKTT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++EI++ G SVA+++A+A++ L + + + VF
Sbjct: 150 GIPKKKPE-------------------VVEIRIGGSSVAERLAYAKEILGKTLAISDVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E+ID + +TKGKGF+G +
Sbjct: 191 AGEIIDTLAITKGKGFQGSV 210
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+ V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSV 210
>gi|150399607|ref|YP_001323374.1| 50S ribosomal protein L3P [Methanococcus vannielii SB]
gi|9910844|sp|Q9UWG2.1|RL3_METVA RecName: Full=50S ribosomal protein L3P
gi|166233160|sp|A6UQJ0.1|RL3_METVS RecName: Full=50S ribosomal protein L3P
gi|150012310|gb|ABR54762.1| ribosomal protein L3 [Methanococcus vannielii SB]
Length = 334
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 57/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P S N
Sbjct: 8 PRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNN 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ VT+LETP + + G+ Y +T GL++ VWA+ +E R+
Sbjct: 65 GQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL---------- 114
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+KK + K + L + + +RVI HT P +
Sbjct: 115 ---TVTKKEEIK-----TVESLDAVLEKTVDLRVIVHT-----------------NPKTT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++EI++ G SVA+K+A+A+ L + + + VF
Sbjct: 150 GIPKKKPE-------------------VVEIRVGGSSVAEKLAYAKDILGKTLSINDVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E ID + VTKGKGF+G +
Sbjct: 191 TGEFIDTLAVTKGKGFQGPV 210
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+K+A+A+ L + + + VF E ID + VTKGKGF+G R
Sbjct: 153 KKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKR 212
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
W K + + KG+ R+ IG W P RV +TV AGQ G+H RTE NK+I ++G+
Sbjct: 213 WGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGS 269
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + KG+ R+ IG W P RV +TV AGQ G+H RTE Y +
Sbjct: 212 RWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTE-------YNKRI 264
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 265 LKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI K +KK ++EI++ G SVA+K+A+A+ L + + + VF E ID +
Sbjct: 139 RVIVHTNPKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTL 198
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ V
Sbjct: 199 AVTKGKGFQGPV 210
>gi|340624855|ref|YP_004743308.1| 50S ribosomal protein L3P [Methanococcus maripaludis X1]
gi|339905123|gb|AEK20565.1| 50S ribosomal protein L3P [Methanococcus maripaludis X1]
Length = 334
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 123/260 (47%), Gaps = 57/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P S +
Sbjct: 8 PRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNS 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 65 SQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRK----------- 113
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T A K+ +K L + + +R I HT P +
Sbjct: 114 -LTLAKKE------EKKTVDALDAVLEKATEVRAIVHT-----------------NPKTT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++EI++ G SVA+++A+A++ L + + + VF
Sbjct: 150 GIPKKKPE-------------------VVEIRVGGSSVAERLAYAKEILGKTLAISDVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E+ID + +TKGKGF+G +
Sbjct: 191 AGEIIDTLAITKGKGFQGSV 210
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRVGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+ V
Sbjct: 153 KKKPEVVEIRVGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSV 210
>gi|337283644|ref|YP_004623118.1| 50S ribosomal protein L3P [Pyrococcus yayanosii CH1]
gi|334899578|gb|AEH23846.1| 50S ribosomal protein L3P [Pyrococcus yayanosii CH1]
Length = 359
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAW 336
+ +D+ +G + +GE++ ++ L Q KK +ME + G SV +K +
Sbjct: 134 YTEDDFQQKLGELEDLIKEGEIVEVRALVSTQPWIIKLKKKPEVMEYAIGGTSVEEKFNY 193
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
++ L + + V V + E++D I VTKGKG +GV RW K K KG RKVA IG
Sbjct: 194 IKERLGKELRVKDVLKEGELLDVIAVTKGKGTQGVIKRWGVKLRAHKDSKGRRKVASIGP 253
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 254 WHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 285
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V RW K K KG RKVA IG WHP+RV +TV AGQ G+HHRTEL K+
Sbjct: 224 GTQGVIKRWGVKLRAHKDSKGRRKVASIGPWHPARVMWTVPMAGQMGFHHRTEL---NKR 280
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
++ I N D E ITP GGFPHYG V +DF+MI G G KR+I +R +
Sbjct: 281 LIA--IGENGKLVLDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPA--I 336
Query: 556 KKRQKKAHLMEIQLNGGSVADK 577
+ +KK + Q+ SV K
Sbjct: 337 RPPKKKPPVQRPQITYVSVESK 358
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 121/261 (46%), Gaps = 43/261 (16%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+GF P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG N
Sbjct: 7 PRRGSLGFTPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGLT-N 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWY--KSR 163
KEI VTI+ETPP+ + GV Y + GL + V + + N+ K +
Sbjct: 63 GKEIFMPVTIVETPPLRVFGVRAYRQGYLGLETATEVIVPDFTLD-------NYVTKKGK 115
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
QK F + ++ L K D QQ L + + + + +
Sbjct: 116 QKTFYELLRRRIATLPKNYTEDDF-------------------QQKLGELEDLIKEGEIV 156
Query: 224 QSN-VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
+ + TQP + K +KK +ME + G SV +K + ++ L + + V
Sbjct: 157 EVRALVSTQP----------WIIKLKKKPEVMEYAIGGTSVEEKFNYIKERLGKELRVKD 206
Query: 283 VFAQDEMIDCIGVTKGKGFKG 303
V + E++D I VTKGKG +G
Sbjct: 207 VLKEGELLDVIAVTKGKGTQG 227
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
K +KK +ME + G SV +K + ++ L + + V V + E++D I VTKGKG + +
Sbjct: 170 KLKKKPEVMEYAIGGTSVEEKFNYIKERLGKELRVKDVLKEGELLDVIAVTKGKGTQGVI 229
>gi|289597193|ref|YP_003483889.1| 50S ribosomal protein L3 [Aciduliprofundum boonei T469]
gi|289534980|gb|ADD09327.1| ribosomal protein L3 [Aciduliprofundum boonei T469]
Length = 340
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 63/280 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPK--DDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
PR GSM +YP+KR+A +++ +P+ D P + F GYKAGMTH+ R +
Sbjct: 7 PRRGSMAYYPRKRAASPIPRIRTWPEIEDGP----RIQGFAGYKAGMTHVFTIDWRKHTT 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
+EI VT++E PPM + GV Y T +GL+S VW E+L +E RRF S+
Sbjct: 63 TAGQEIWTPVTVIEVPPMKVAGVRFYERTMYGLKSIGEVWDENLDKELARRFPLPKEYSK 122
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
KA + +D IR+I HTQ + +
Sbjct: 123 DKALERIKGDIED--------------------IRLIVHTQPR----------------L 146
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
S V K PD +MEI++ GG++ + +A L + I
Sbjct: 147 VSGVPKKAPD-------------------IMEIRVGGGTIDARKEYALNLLGKEIKFSDF 187
Query: 284 FAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLM 321
+ + +D I +TKGKGF+G + +KLL ++ +K M
Sbjct: 188 KSDGKFVDVIAITKGKGFQGHVKRFGVKLLNQKNRKHRRM 227
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ K L +K K R + +G WHP V++TV +AGQ GYH RTE KY+ + +
Sbjct: 211 RFGVKLLNQKNRKHRRMIGTLGPWHPDWVRYTVPQAGQMGYHQRTEYNKRIVKYVDFIEE 270
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
N ITP GGFPHYGEV N +++I G GP KR+I R
Sbjct: 271 NGEKR----LAIDITPKGGFPHYGEVKNAYVLIHGSVPGPAKRLIRFR 314
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 17/162 (10%)
Query: 272 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ---------KKAHLME 322
+ L + P+ + +++D+ ++ I KG++ ++L+ Q K +ME
Sbjct: 108 KELARRFPLPKEYSKDKALERI--------KGDIEDIRLIVHTQPRLVSGVPKKAPDIME 159
Query: 323 IQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPR 382
I++ GG++ + +A L + I + + +D I +TKGKGF+G R+ K L +
Sbjct: 160 IRVGGGTIDARKEYALNLLGKEIKFSDFKSDGKFVDVIAITKGKGFQGHVKRFGVKLLNQ 219
Query: 383 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKI 424
K K R + +G WHP V++TV +AGQ GYH RTE NK+I
Sbjct: 220 KNRKHRRMIGTLGPWHPDWVRYTVPQAGQMGYHQRTEYNKRI 261
>gi|254168629|ref|ZP_04875472.1| ribosomal protein L3 [Aciduliprofundum boonei T469]
gi|197622463|gb|EDY35035.1| ribosomal protein L3 [Aciduliprofundum boonei T469]
Length = 340
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 63/280 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPK--DDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
PR GSM +YP+KR+A +++ +P+ D P + F GYKAGMTH+ R +
Sbjct: 7 PRRGSMAYYPRKRAASPIPRIRTWPEIEDGP----RIQGFAGYKAGMTHVFTIDWRKHTT 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
+EI VT++E PPM + GV Y T +GL+S VW E+L +E RRF S+
Sbjct: 63 TAGQEIWTPVTVIEVPPMKVAGVRFYERTMYGLKSIGEVWDENLDKELARRFPLPKEYSK 122
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
KA + +D IR+I HTQ + +
Sbjct: 123 DKALERIKGDIED--------------------IRLIVHTQPK----------------L 146
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
S V K PD +MEI++ GG++ + +A L + I
Sbjct: 147 VSGVPKKAPD-------------------IMEIRVGGGTIDARKEYALNLLGKEIKFSDF 187
Query: 284 FAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLM 321
+ + +D I +TKGKGF+G + +KLL ++ +K M
Sbjct: 188 KSDGKFVDVIAITKGKGFQGHVKRFGVKLLNQKNRKHRRM 227
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 17/162 (10%)
Query: 272 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKK---------AHLME 322
+ L + P+ + +++D+ ++ I KG++ ++L+ Q K +ME
Sbjct: 108 KELARRFPLPKEYSKDKALERI--------KGDIEDIRLIVHTQPKLVSGVPKKAPDIME 159
Query: 323 IQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPR 382
I++ GG++ + +A L + I + + +D I +TKGKGF+G R+ K L +
Sbjct: 160 IRVGGGTIDARKEYALNLLGKEIKFSDFKSDGKFVDVIAITKGKGFQGHVKRFGVKLLNQ 219
Query: 383 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKI 424
K K R + +G WHP V++TV +AGQ GYH RTE NK+I
Sbjct: 220 KNRKHRRMIGTLGPWHPDWVRYTVPQAGQMGYHQRTEYNKRI 261
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ K L +K K R + +G WHP V++TV +AGQ GYH RTE KY+ + +
Sbjct: 211 RFGVKLLNQKNRKHRRMIGTLGPWHPDWVRYTVPQAGQMGYHQRTEYNKRIVKYVDFIEE 270
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
N ITP GGF HYGEV N++++I G GP KR++ R
Sbjct: 271 NGEKK----LAIDITPKGGFLHYGEVKNEYVLIHGSVPGPAKRLVRFR 314
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 545 RVITLRKMKLLKKRQKKA-HLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R+I + KL+ KKA +MEI++ GG++ + +A L + I + + +D
Sbjct: 137 RLIVHTQPKLVSGVPKKAPDIMEIRVGGGTIDARKEYALNLLGKEIKFSDFKSDGKFVDV 196
Query: 604 IGVTKGKGFK 613
I +TKGKGF+
Sbjct: 197 IAITKGKGFQ 206
>gi|255710123|gb|ACU30881.1| 60S ribosomal protein L3 [Ochlerotatus triseriatus]
Length = 144
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 75/111 (67%), Gaps = 13/111 (11%)
Query: 481 KGYHHRTELFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNND 531
KGYHHRTE+ KK Y V+KN+A+T+YDLT+K+ITPMGGFP YGE+NND
Sbjct: 1 KGYHHRTEI--NKKIYRIGAGIHTKDGKVVKNSAATEYDLTDKTITPMGGFPLYGEINND 58
Query: 532 FLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
FLM+KGCC+G K+R+ITLRK L+ K+A L +I L + K+ R
Sbjct: 59 FLMVKGCCIGAKRRIITLRKSLLV--HTKRASLEQINLKFIDTSSKMGHGR 107
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 31/42 (73%)
Query: 412 KGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKT 453
KGYHHRTE+NKKIYR+GAGIHTKDGKV S L KT
Sbjct: 1 KGYHHRTEINKKIYRIGAGIHTKDGKVVKNSAATEYDLTDKT 42
>gi|14520558|ref|NP_126033.1| 50S ribosomal protein L3P [Pyrococcus abyssi GE5]
gi|9910846|sp|Q9V1T5.1|RL3_PYRAB RecName: Full=50S ribosomal protein L3P
gi|5457774|emb|CAB49264.1| rpl3P LSU ribosomal protein L3P [Pyrococcus abyssi GE5]
gi|380741085|tpe|CCE69719.1| TPA: 50S ribosomal protein L3P [Pyrococcus abyssi GE5]
Length = 361
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAW 336
+ +D+ +G + +GE++ ++ L Q KK +ME + G SV +K +
Sbjct: 136 YTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 195
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
++ L + + VG+V + E++D I VTKGKG +G RW K K KG RKV IG
Sbjct: 196 IKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGP 255
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 256 WHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 287
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 75/135 (55%), Gaps = 7/135 (5%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTEL K+ ++ I
Sbjct: 233 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL---NKRLIA--IG 287
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N D E ITP GGFPHYG V +DF+MI G G KR+I +R ++ +KK
Sbjct: 288 ENGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPA--IRPPKKKP 345
Query: 563 HLMEIQLNGGSVADK 577
+ Q+ SV K
Sbjct: 346 PVQRPQITYVSVESK 360
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 59/270 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG N
Sbjct: 7 PRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGLT-N 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWA------EHLSQECRRR---FY 156
KEI VTI+ETPP+ + G+ Y + GL + V ++S++ + R FY
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFTFY 122
Query: 157 ---KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQN 213
K + K +TK ++ KLG +L M K +++ V A Q +
Sbjct: 123 QLLKRRIATLPKNYTKDD--FEQKLG------NLEDMIKEGEIVEVRALVATQPWVI--- 171
Query: 214 QQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 273
K +KK +ME + G SV +K + ++
Sbjct: 172 --------------------------------KLKKKPEVMEYAIGGTSVEEKFNYIKEK 199
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
L + + VG+V + E++D I VTKGKG +G
Sbjct: 200 LGKELRVGEVLKEGELLDVIAVTKGKGTQG 229
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K +KK +ME + G SV +K + ++ L + + VG+V + E++D I VTKGKG
Sbjct: 172 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKG 226
>gi|18978197|ref|NP_579554.1| 50S ribosomal protein L3P [Pyrococcus furiosus DSM 3638]
gi|397652527|ref|YP_006493108.1| 50S ribosomal protein L3P [Pyrococcus furiosus COM1]
gi|42559663|sp|Q8TZZ8.1|RL3_PYRFU RecName: Full=50S ribosomal protein L3P
gi|428697961|pdb|3J21|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
gi|18894006|gb|AAL81949.1| LSU ribosomal protein L3P [Pyrococcus furiosus DSM 3638]
gi|393190118|gb|AFN04816.1| 50S ribosomal protein L3P [Pyrococcus furiosus COM1]
Length = 365
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 74/116 (63%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +KK +ME + G SV +K + ++ L + + VG+V + E++D I VTKGKG +G
Sbjct: 175 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPV 234
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 235 KRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 290
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTEL K L + +
Sbjct: 236 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL----NKRLIAIGE 291
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N + TE ITP GGFPHYG V +DF+MI G G KR+I +R ++ +KK
Sbjct: 292 NGKLKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPA--IRPPKKKP 349
Query: 563 HLMEIQLNGGSVADK 577
+ Q+ SV K
Sbjct: 350 PVQRPQITYVSVESK 364
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 34/259 (13%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+GF P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGL-TN 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KEI VTI+ETPP+ + G+ Y GL + V + N+ +K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLD-------NYPAKERK 115
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAH-TQNQQQSLHQNQQSHTKDQPIQ 224
K KM Y + R IA +N Q + + + +D +
Sbjct: 116 GKPKP------------------KMTFYKLLERRIATLPKNYTQEMFEQKLGQLEDMIKE 157
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
+ D + K +KK +ME + G SV +K + ++ L + + VG+V
Sbjct: 158 GEIV----DVRAIVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVL 213
Query: 285 AQDEMIDCIGVTKGKGFKG 303
+ E++D I VTKGKG +G
Sbjct: 214 KEGELLDVIAVTKGKGTQG 232
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K +KK +ME + G SV +K + ++ L + + VG+V + E++D I VTKGKG
Sbjct: 175 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKG 229
>gi|332796528|ref|YP_004458028.1| 50S ribosomal protein L3 [Acidianus hospitalis W1]
gi|332694263|gb|AEE93730.1| ribosomal protein L3 [Acidianus hospitalis W1]
Length = 361
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 157/397 (39%), Gaps = 123/397 (30%)
Query: 34 RVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHI 93
R + HRK ++PR GS GF P+KR+ + +P+ + P+ L F+GYK GMTH+
Sbjct: 19 RGRGLGHRKLASPRRGSSGFRPRKRAEELLPTPRSWPRISSSNPI-LLGFVGYKVGMTHV 77
Query: 94 VREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKT-VWAEHLSQECR 152
D GS KE+ VT++ETPP++ + + Y+ G T W L QE
Sbjct: 78 YYINDIKGSSEYGKEVFTPVTVIETPPIIPIALRAYILGSKGEPEVLTDYWTPELPQEIT 137
Query: 153 RRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
R+ K+ K +DKL + L K
Sbjct: 138 RKI-------------KSLKVNKDKLN-----EFLDK----------------------- 156
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKR-QKKAHLMEIQLNGGSVADKIAWAR 271
I+SN+N Q KL+ +KK ++EIQ+ GG + ++ +
Sbjct: 157 ----------IKSNLNNILYLRAIIATQPKLVPALGKKKPEIVEIQVGGGDTSAQLNYLL 206
Query: 272 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVA 331
L +P+ V +F + +++D IGVTKGKGF+G + K+ +ME+
Sbjct: 207 DILGKPVNVTDIFKEGQLVDIIGVTKGKGFQGVI----------KRYSVMEL-------- 248
Query: 332 DKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 391
RWH K KG RKV
Sbjct: 249 -----------------------------------------PRWH------KHRKGSRKV 261
Query: 392 ACIGAWHPSR-VQFTVARAGQKGYHHRTELNKKIYRM 427
G PS V + GQ G+H RTE NK+I ++
Sbjct: 262 GTKG---PSLGTPSYVPQPGQLGFHRRTEYNKRILKI 295
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 530 NDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 589
N+ L ++ K V L K KK ++EIQ+ GG + ++ + L +P+
Sbjct: 162 NNILYLRAIIATQPKLVPALGK--------KKPEIVEIQVGGGDTSAQLNYLLDILGKPV 213
Query: 590 PVGQVFAQDEMIDCIGVTKGKGFKECV 616
V +F + +++D IGVTKGKGF+ +
Sbjct: 214 NVTDIFKEGQLVDIIGVTKGKGFQGVI 240
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSR-VQFTVARAGQKGYHHR 486
G+ G V R+ +LPR K KG RKV G PS V + GQ G+H R
Sbjct: 229 GVTKGKGFQGVIKRYSVMELPRWHKHRKGSRKVGTKG---PSLGTPSYVPQPGQLGFHRR 285
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L + ST+ + I P GGF YG V N +++I+G +G +KR
Sbjct: 286 TE---YNKRILKI------STN----PQEINPAGGFVKYGLVKNPYILIQGSTIGVRKRP 332
Query: 547 ITLR 550
+ LR
Sbjct: 333 LFLR 336
>gi|389853117|ref|YP_006355351.1| 50S ribosomal protein L3 [Pyrococcus sp. ST04]
gi|388250423|gb|AFK23276.1| rplC, large subunit ribosomal protein L3 [Pyrococcus sp. ST04]
Length = 361
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAW 336
+ Q++ +G + +GE++ ++ L Q KK +ME + G SV +K +
Sbjct: 136 YTQEQFEQKLGQLEDMIKEGEIVEVRALVSTQPWIIKLKKKPEVMEYAIGGTSVEEKFNY 195
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
++ L + + V +V + E++D I VTKGKG +G RW K K KG RKV IG
Sbjct: 196 IKERLGKELRVDEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGP 255
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 256 WHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 287
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTEL K+ ++ I
Sbjct: 233 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL---NKRLIA--IG 287
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
+N + + E ITP GGFPHYG V +DF+MI G GP KR+I +R ++ +KK
Sbjct: 288 HNGKLELNGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGPVKRIIRVRPA--IRPPKKKP 345
Query: 563 HLMEIQLNGGSVADK 577
+ Q+ SV K
Sbjct: 346 PVQRPQITYVSVESK 360
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 45/267 (16%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GS+GF P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG
Sbjct: 3 KIHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWA-----EHLSQECRRRFY 156
N KEI VTI+ETPP+ + G+ Y + GL + V ++ + ++
Sbjct: 60 LT-NGKEIFVPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFKLDNYPVKPNKKVE 118
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
+YK ++ K + + ++ + Q L M K +++ V A
Sbjct: 119 MTFYKLLRRRIATLPKDYTQEQFEQKLGQ-LEDMIKEGEIVEVRA--------------- 162
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+ TQP + K +KK +ME + G SV +K + ++ L +
Sbjct: 163 ----------LVSTQP----------WIIKLKKKPEVMEYAIGGTSVEEKFNYIKERLGK 202
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V +V + E++D I VTKGKG +G
Sbjct: 203 ELRVDEVLKEGELLDVIAVTKGKGTQG 229
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K +KK +ME + G SV +K + ++ L + + V +V + E++D I VTKGKG
Sbjct: 172 KLKKKPEVMEYAIGGTSVEEKFNYIKERLGKELRVDEVLKEGELLDVIAVTKGKG 226
>gi|291333648|gb|ADD93339.1| ribosomal protein L3 [uncultured archaeon MedDCM-OCT-S11-C441]
Length = 348
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 145/301 (48%), Gaps = 37/301 (12%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MG+ P+KR+ R ++ +P+ + ++ V + F G+KAGMTHI+ P S +E+
Sbjct: 1 MGYGPRKRTVRQYPRITSWPETEASE-VRVQGFAGWKAGMTHILMRDTNPKSTSAGQEVR 59
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
+AVT++E PPM ++ V GY TP+G ++ VW + +S+E + R T+
Sbjct: 60 KAVTVVEAPPMTVLAVRGYRMTPYGKQTAGEVWTD-VSEESPTNLF-----PRLANQTRG 113
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
+ ++ G+K + R + K + A+ SL Q S + + T
Sbjct: 114 ER--DEEQGRKPAKRGGRIPKRPSKPLEEAAN------SLRQQDLSEVR------LIVCT 159
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
QP+S S K +ME+ L GG + K+ WA + L I + V+ + +
Sbjct: 160 QPESVRSVP--------SKTPEIMEMGLTGGDIEAKLEWALERLGGEIGIEDVYDVGQEV 211
Query: 291 DCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLMEIQLNGGSVAD-KIAWARQHLEQPIPV 347
D +GVTKGKG++G + +KLL + K + GG++ D + R+ + Q V
Sbjct: 212 DVVGVTKGKGWQGSIKRFGLKLLSHKNSKR-----RRQGGNMGDFGTGYVRKTIRQAGQV 266
Query: 348 G 348
G
Sbjct: 267 G 267
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K +ME+ L GG + K+ WA + L I + V+ + +D +GVTKGKG++G R+
Sbjct: 170 KTPEIMEMGLTGGDIEAKLEWALERLGGEIGIEDVYDVGQEVDVVGVTKGKGWQGSIKRF 229
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
K L K K R+ +G + V+ T+ +AGQ GYH RTELNKKI R+
Sbjct: 230 GLKLLSHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQVGYHKRTELNKKILRI 281
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ K L K K R+ +G + V+ T+ +AGQ GYH RTEL KK L +
Sbjct: 228 RFGLKLLSHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQVGYHKRTEL---NKKILRI--- 281
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ E ITP GGF +YGEV N +++I+G GP KR+I R
Sbjct: 282 ------SNPEESEITPAGGFLNYGEVTNPYMIIQGSLPGPAKRLIRFR 323
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
K +ME+ L GG + K+ WA + L I + V+ + +D +GVTKGKG++ +
Sbjct: 170 KTPEIMEMGLTGGDIEAKLEWALERLGGEIGIEDVYDVGQEVDVVGVTKGKGWQGSI 226
>gi|84489708|ref|YP_447940.1| 50S ribosomal protein L3P [Methanosphaera stadtmanae DSM 3091]
gi|109893523|sp|Q2NFV6.1|RL3_METST RecName: Full=50S ribosomal protein L3P
gi|84373027|gb|ABC57297.1| 50S ribosomal protein L3P [Methanosphaera stadtmanae DSM 3091]
Length = 337
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 112/259 (43%), Gaps = 57/259 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR AR +V +P+ D L AF GYK GMTH+ R GS
Sbjct: 7 PRKGSVAFSPRKRVARETPRVSTWPELDEA---GLLAFAGYKVGMTHVTALDSRKGSPTE 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWA-EHLSQECRRRFYKNWYKSRQ 164
E+ VTILE PP+V++G+ Y +T +GL++ V A ++L E R+
Sbjct: 64 NMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------- 114
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
+ K+ D K ++LR IRV+ HT+
Sbjct: 115 -----SVPKFDDIEAK---IEELRNKIDDIDEIRVLIHTKP------------------- 147
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
KL +KK ++E L G SV DK+ +A L + I VF
Sbjct: 148 -----------------KLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVF 190
Query: 285 AQDEMIDCIGVTKGKGFKG 303
+ E D I TKGKG +G
Sbjct: 191 QEGEYTDAIATTKGKGVQG 209
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +KK ++E L G SV DK+ +A L + I VF + E D I TKGKG
Sbjct: 148 KLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGV 207
Query: 369 KGVTSRWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
+G R+ + + + G+ R V IG W P+R +TVA GQ GYH RTE NKK+ +
Sbjct: 208 QGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLK 267
Query: 427 MG 428
+G
Sbjct: 268 IG 269
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V IG W P+R +TVA GQ GYH RTE Y ++K ++ DL I
Sbjct: 230 RHVGSIGPWTPNRTMWTVAMQGQMGYHKRTE-------YNKKLLKIGDESEVDL----IN 278
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
P GGF YG V N+++++KG GP KR++ LRK
Sbjct: 279 PDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRK 312
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ K KL +KK ++E L G SV DK+ +A L + I VF + E D I
Sbjct: 140 RVLIHTKPKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAI 199
Query: 605 GVTKGKGFKECVHSNASCAKYFKS 628
TKGKG + V +Y K+
Sbjct: 200 ATTKGKGVQGPVKRFGVRIQYGKA 223
>gi|15668348|ref|NP_247144.1| 50S ribosomal protein L3P [Methanocaldococcus jannaschii DSM 2661]
gi|1710558|sp|P54014.1|RL3_METJA RecName: Full=50S ribosomal protein L3P
gi|1590928|gb|AAB98161.1| LSU ribosomal protein L3P (rplC) [Methanocaldococcus jannaschii DSM
2661]
Length = 335
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 58/264 (21%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
+ PR GS+ F P+KR+ R +++ +P++D V L AF YKAGM+H + D P S
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKS 61
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYKNWYK 161
+E+ +TILE PP+ + + Y L + VWA++L +E R+
Sbjct: 62 PNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI------ 115
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
K K +KT+ +DL + + +RV+ HT + L
Sbjct: 116 -----------KLPKKEDRKTV-EDLEALKDKIEDVRVLVHTNPKLTCLP---------- 153
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+KK ++EI++ G + +++ +A++ L + + +
Sbjct: 154 --------------------------KKKPEILEIRIGGKDIEERLNYAKEILGKQLNIT 187
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF + E++D IGVTKGKGF+G++
Sbjct: 188 DVFQEGELVDTIGVTKGKGFQGQV 211
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G + +++ +A++ L + + + VF + E++D IGVTKGKGF+G R
Sbjct: 154 KKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKR 213
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + KG+ R V IG W P V ++V GQ GYH RTE NK+I ++G
Sbjct: 214 WGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG 269
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + KG+ R V IG W P V ++V GQ GYH RTE K+ L
Sbjct: 213 RWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEY---NKRILK-- 267
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
I NN ITP GGF HYG + N+++++KG GP KR+I LR+
Sbjct: 268 IGNNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRR 310
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ KL +KK ++EI++ G + +++ +A++ L + + + VF + E++D I
Sbjct: 140 RVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTI 199
Query: 605 GVTKGKGFK 613
GVTKGKGF+
Sbjct: 200 GVTKGKGFQ 208
>gi|256810689|ref|YP_003128058.1| 50S ribosomal protein L3P [Methanocaldococcus fervens AG86]
gi|256793889|gb|ACV24558.1| ribosomal protein L3 [Methanocaldococcus fervens AG86]
Length = 335
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 58/264 (21%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
+ PR GS+ F P+KR+ R +++ +P++D V L AF YKAGMTH + D P S
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPEEDN---VRLQAFPVYKAGMTHAFIKEDNPKS 61
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYKNWYK 161
+E+ VT+LE PP+ + + Y L + VWA++L +E R+
Sbjct: 62 PNAGQEVFTPVTVLEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI------ 115
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
K K +KT+ +DL + + +RV+ HT + L
Sbjct: 116 -----------KLPKKEERKTV-EDLEAIKDKIEDVRVLVHTNPKLTCLP---------- 153
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+KK ++EI++ G + +++ +A++ L + + +
Sbjct: 154 --------------------------KKKPEILEIRIGGKDIEERLNYAKEILGKQLNIT 187
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF + E++D IGVTKGKGF+G++
Sbjct: 188 DVFQEGELVDTIGVTKGKGFQGQV 211
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G + +++ +A++ L + + + VF + E++D IGVTKGKGF+G R
Sbjct: 154 KKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKR 213
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + KG+ R V IG W P V +TV GQ GYH RTE NK+I ++G
Sbjct: 214 WGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWTVPMPGQMGYHQRTEYNKRILKIG 269
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + KG+ R V IG W P V +TV GQ GYH RTE K+ L
Sbjct: 213 RWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWTVPMPGQMGYHQRTEY---NKRILK-- 267
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I NN + ITP GGF HYG + N+++++KG GP KR+I LR
Sbjct: 268 IGNNG--------EEITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLR 309
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ KL +KK ++EI++ G + +++ +A++ L + + + VF + E++D I
Sbjct: 140 RVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTI 199
Query: 605 GVTKGKGFK 613
GVTKGKGF+
Sbjct: 200 GVTKGKGFQ 208
>gi|15920641|ref|NP_376310.1| 50S ribosomal protein L3P [Sulfolobus tokodaii str. 7]
gi|42559677|sp|Q975I1.1|RL3_SULTO RecName: Full=50S ribosomal protein L3P
gi|15621424|dbj|BAB65419.1| 50S ribosomal protein L3P [Sulfolobus tokodaii str. 7]
Length = 343
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 48/265 (18%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK ++PR GS G P+KR++ + +P +P L F+GYK GM+HI D+
Sbjct: 3 HRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDK 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
P S KEI V+++ETPP++ + + YV P G
Sbjct: 62 PTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKG------------------------ 97
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
T ++ W D I++DL K+ + KV R+ + + L +
Sbjct: 98 ------EPTTLTEYWGD------ISEDLLKLIQQRKVTRLKIDKEKMKGKLDE------- 138
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKR-QKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
I + +N Q KL+ +KK ++E+Q+ GG + ++ + L +P+
Sbjct: 139 ---INNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPL 195
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF + ++ID IGVTKGKGF+G
Sbjct: 196 SVKDVFKEGQLIDIIGVTKGKGFQG 220
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++E+Q+ GG + ++ + L +P+ V VF + ++ID IGVTKGKGF+GV R
Sbjct: 165 KKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKR 224
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPS-RVQFTVARAGQKGYHHRTELNKKIYRM 427
+ +LPR K KG RKV GA PS V + GQ GYH RTE NK+I ++
Sbjct: 225 YGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKI 277
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPS-RVQFTVARAGQKGYHHR 486
G+ G V R+ +LPR K KG RKV GA PS V + GQ GYH R
Sbjct: 211 GVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRR 267
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L + N I P GGF +YG V N +L+I+G +G KKR
Sbjct: 268 TE---YNKRILKISDDPN----------EINPKGGFVNYGIVRNTYLIIEGSIIGAKKRP 314
Query: 547 ITLR 550
+ LR
Sbjct: 315 LFLR 318
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 527 EVNN---DFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 583
E+NN D L ++ K V +L K KK ++E+Q+ GG + ++ +
Sbjct: 138 EINNKLNDILYLRVLIATQPKLVPSLGK--------KKPEIVEVQVGGGDIKSQLNYVLN 189
Query: 584 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
L +P+ V VF + ++ID IGVTKGKGF+ V
Sbjct: 190 ILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVV 222
>gi|215259693|gb|ACJ64338.1| 60S ribosomal protein L3 [Culex tarsalis]
Length = 143
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 72/110 (65%), Gaps = 13/110 (11%)
Query: 482 GYHHRTELFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDF 532
GYHHRTE+ KK Y V+KN+A+T+YDLT+KSITPMGGFP YGE+N DF
Sbjct: 1 GYHHRTEI--NKKIYRIGAGIHTKDGKVVKNSAATEYDLTDKSITPMGGFPFYGEINQDF 58
Query: 533 LMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
LMIKGCC+G K+R+ITLRK L K+A L I+L + K+ R
Sbjct: 59 LMIKGCCIGAKRRIITLRKSLLT--HTKRASLERIKLKFIDTSSKMGHGR 106
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 26/26 (100%)
Query: 413 GYHHRTELNKKIYRMGAGIHTKDGKV 438
GYHHRTE+NKKIYR+GAGIHTKDGKV
Sbjct: 1 GYHHRTEINKKIYRIGAGIHTKDGKV 26
>gi|352682917|ref|YP_004893441.1| 50S ribosomal protein L3p [Thermoproteus tenax Kra 1]
gi|350275716|emb|CCC82363.1| 50S ribosomal protein L3p [Thermoproteus tenax Kra 1]
Length = 339
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 156/391 (39%), Gaps = 122/391 (31%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GSMG YP+KR++ +V+ +P KP L F YK GM H V D+
Sbjct: 4 KIHRPRRGSMGVYPRKRASDIVPRVRTWPDPQLGKP-SLLGFAAYKVGMIHAVLVEDKQT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLR-SFKTVWAEHLSQECRRRFYKNW 159
S + KEIV+A T+LE PP+ I+ + Y P +G R S VW + ++ R
Sbjct: 63 SPLFGKEIVKAATVLEAPPLKILAIRLYSLDPTNGYRKSIGEVWTPEIPRDVAR------ 116
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
V++ + + N + L Q
Sbjct: 117 ------------------------------------VVKTLPKSYNLEDRLKLLDQLKPA 140
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
+++ V+ TQP +L +K L+EI + G S+ ++I + + L + +
Sbjct: 141 AVEVRALVS-TQP---------RLAGIGKKTPELLEIPIGGVASIDERIKYGLEILGKEV 190
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
+ VF++ ++ID IG+TKGKG++G
Sbjct: 191 KIADVFSEGKLIDVIGITKGKGWQG----------------------------------- 215
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+I GVT + RWH K KG R+ IG
Sbjct: 216 -----------------VIKRFGVT-------ILPRWH------KHRKGHRRTGTIGPQS 245
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
P+ + FT R GQ G+H R+E NK+I ++G+
Sbjct: 246 PA-LMFTQPRPGQMGFHQRSEYNKRILKIGS 275
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ + FT R GQ G+H R+E K+ L
Sbjct: 222 VTILPRWH------KHRKGHRRTGTIGPQSPA-LMFTQPRPGQMGFHQRSE---YNKRIL 271
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I +N + I P GG+PHYG V D++++ G GP KR+I LR
Sbjct: 272 K--IGSNPA--------EINPRGGWPHYGLVKTDYVILAGSVQGPPKRLIVLR 314
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 559 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K L+EI + G S+ ++I + + L + + + VF++ ++ID IG+TKGKG++ +
Sbjct: 159 KKTPELLEIPIGGVASIDERIKYGLEILGKEVKIADVFSEGKLIDVIGITKGKGWQGVI 217
>gi|47079404|gb|AAT10147.1| ribosomal protein L3 [uncultured marine group II euryarchaeote
DeepAnt-JyKC7]
Length = 358
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 34/275 (12%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
P+ GSMGF P+KR+ R G++ +P+ + ++ + + F G+KAGMTH++ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+EI +AVT++E PPM ++ V GY TP+G+++ +WA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGP----------DGLMP 115
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
F ++ +D ++ RK AK I V N + + + I +
Sbjct: 116 RFANQTRGDRD-------IEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVA 168
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAH-LMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
TQP L+K K +ME+ L GG K+ WA + L I + V+
Sbjct: 169 ----TQP---------ALVKSVPSKTPVIMEVGLVGGDTGAKLEWAHERLGGEIGIDDVY 215
Query: 285 AQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKK 317
+ +D +G+TKGKG++G + +KLL + K
Sbjct: 216 EAGKELDVVGITKGKGWQGVIKRFGVKLLSHKNSK 250
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%)
Query: 320 LMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKK 379
+ME+ L GG K+ WA + L I + V+ + +D +G+TKGKG++GV R+ K
Sbjct: 184 IMEVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKL 243
Query: 380 LPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
L K K R++ +G + V+ T+ +AGQ GYH RTELNK+I R+
Sbjct: 244 LSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRI 291
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 377 TKKLPRKTHKGLRKVACIGAWHPSRVQFTVAR-AGQKGYHHRTELNKKIYRMGAGIHTKD 435
K +P KT + +V +G +++++ R G+ G E K++ +G I
Sbjct: 174 VKSVPSKTPV-IMEVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVG--ITKGK 230
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V R+ K L K K R++ +G + V+ T+ +AGQ GYH RTEL K+
Sbjct: 231 GWQGVIKRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTEL---NKR 287
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L I N +D +TP GGF HYGEV N +++++G GP KR++ R
Sbjct: 288 ILR--ISNPGESD-------VTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFR 333
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 526 GEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAH-LMEIQLNGGSVADKIAWARQH 584
G +N D L + R+I + L+K K +ME+ L GG K+ WA +
Sbjct: 145 GGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIMEVGLVGGDTGAKLEWAHER 204
Query: 585 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
L I + V+ + +D +G+TKGKG++ +
Sbjct: 205 LGGEIGIDDVYEAGKELDVVGITKGKGWQGVI 236
>gi|433638933|ref|YP_007284693.1| archaeal ribosomal protein L3 [Halovivax ruber XH-70]
gi|433290737|gb|AGB16560.1| archaeal ribosomal protein L3 [Halovivax ruber XH-70]
Length = 340
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 120/282 (42%), Gaps = 66/282 (23%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
PR GS+GF P+KR+ + + +P DD PT L F GYKAGMTH+V D S
Sbjct: 7 PRKGSLGFGPRKRATSEVPRFRSWPDDDGQPT----LQGFAGYKAGMTHVVTVDDAANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF----YKNW 159
E VTI+ETPPM I + Y E+P+G + VWA+ L E R
Sbjct: 63 TEGMETTVPVTIVETPPMAIAALRAYEESPYGQQPVAEVWADELDDELERTLDLPGDDYD 122
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
+ FT A + A +R I +T T
Sbjct: 123 RDAAADEFTAALE------------------AGRVDDVRAITYT--------------TP 150
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
D+ IQS V KT+PD +ME ++ GGSV D++ + LE
Sbjct: 151 DE-IQS-VPKTKPD-------------------VMETRIGGGSVDDRVEFGLDLLEADGG 189
Query: 280 ---VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 6/126 (4%)
Query: 317 KAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKGVTS 373
K +ME ++ GGSV D++ + LE + VF E +D GVTKGKG +G
Sbjct: 160 KPDVMETRIGGGSVDDRVEFGLDLLEADGGEHVMNDVFRAGEYVDASGVTKGKGTQGPVK 219
Query: 374 RWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 220 RWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLLAIGDGA 279
Query: 432 H-TKDG 436
T DG
Sbjct: 280 DATVDG 285
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 24/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV+F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVEFGLDLLEADGGEH---VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ L++ +A+ D
Sbjct: 232 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLLAIGDGADATVD---- 284
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP +R+I R
Sbjct: 285 -------GGFVNYGEVDGPHALIKGSLPGPSQRLIRFR 315
>gi|312137075|ref|YP_004004412.1| 50S ribosomal protein L3 [Methanothermus fervidus DSM 2088]
gi|311224794|gb|ADP77650.1| LSU ribosomal protein L3P [Methanothermus fervidus DSM 2088]
Length = 333
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 117/258 (45%), Gaps = 55/258 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR++R ++K +P+ K L A GYK GMTH++ ++ S
Sbjct: 7 PRRGSLAFSPRKRASRETPRIKSWPE---IKDTCLLAAAGYKVGMTHVMAIDNKKNSPTE 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E+ VTI+ETPP+ ++G+ Y T GL++ V A+ L ++ RR + K
Sbjct: 64 GMEVFTPVTIIETPPLTVMGIRAYERTSRGLKTLTDVLADDLKEDLERRINLPKNYDKDK 123
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
A K + + Y + +RV+ HT + + +
Sbjct: 124 ALDK-----------------IEENKDYIEEVRVLVHTNPR----------------LVT 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
V K +P+ + E L G +K+ +A + L + + + ++F+
Sbjct: 151 GVPKKKPE-------------------IFECGLGGKDPQEKLEYALELLGKDVKISEIFS 191
Query: 286 QDEMIDCIGVTKGKGFKG 303
+ E +D I VTKGKGF+G
Sbjct: 192 EGEYVDTIAVTKGKGFQG 209
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 10/167 (5%)
Query: 271 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKR------QKKAHLMEIQ 324
++ LE+ I + + + +D+ +D I + K + E+ + R +KK + E
Sbjct: 106 KEDLERRINLPKNYDKDKALDKI--EENKDYIEEVRVLVHTNPRLVTGVPKKKPEIFECG 163
Query: 325 LNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKT 384
L G +K+ +A + L + + + ++F++ E +D I VTKGKGF+G RW K KT
Sbjct: 164 LGGKDPQEKLEYALELLGKDVKISEIFSEGEYVDTIAVTKGKGFQGPVKRWGIKIQNAKT 223
Query: 385 HKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
+ R + +G W PSR + V +AGQ GYH RTE NK I ++G
Sbjct: 224 ARSGKGRHIGSLGPWTPSRTMWRVPQAGQTGYHRRTEYNKMIMKIGT 270
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R + +G W PSR + V +AGQ GYH RTE Y M++K S D EK I
Sbjct: 230 RHIGSLGPWTPSRTMWRVPQAGQTGYHRRTE-------YNKMIMKIGTS---DEVEK-IN 278
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKK 561
P GGF YG V ND+L++KG GP KR+I LRK K RQ+K
Sbjct: 279 PKGGFIRYGLVRNDYLLVKGSVPGPTKRLIMLRKAIRPKVRQEK 322
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK + E L G +K+ +A + L + + + ++F++ E +D I VTKGKGF+ V
Sbjct: 154 KKKPEIFECGLGGKDPQEKLEYALELLGKDVKISEIFSEGEYVDTIAVTKGKGFQGPV 211
>gi|77024938|gb|ABA61365.1| ribosomal protein L3 [uncultured marine group II euryarchaeote
HF70_59C08]
Length = 338
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 125/274 (45%), Gaps = 52/274 (18%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
P+ GSMGF P+KR+ R G+VK +P+ D + V + F G+KAGMTH++ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E+ +AVT++E PPM ++ V GY TP+G ++ WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA--------------------- 104
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
++ K D + + R I + + H ++ + ++
Sbjct: 105 ----SADKLSDVI---------------PSLPRRIPERKEHDANAHLDKLRESDLAEVRL 145
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
V+ +QPD K+ K +ME+ L GG + ++ WA + L + + + VF
Sbjct: 146 IVS-SQPD--------KVSAVGSKSPEIMEMGLTGGDLGAQLDWAAEKLGEELGIEDVFE 196
Query: 286 QDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKK 317
ID IGVTKG G +G + +KLL + K
Sbjct: 197 SGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSK 230
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 64/112 (57%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K +ME+ L GG + ++ WA + L + + + VF ID IGVTKG G +GV R+
Sbjct: 160 KSPEIMEMGLTGGDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRF 219
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
K L K K R++ +G + V+ T+ +AGQ GYH RTE NK+I R+
Sbjct: 220 GVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI 271
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K L K K R++ +G + V+ T+ +AGQ GYH RTE
Sbjct: 205 GVTKGYGNQGVVRRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEY 264
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
K+ L + + E ITP GGF HYGEV N +++I+G GP KR+I
Sbjct: 265 ---NKRILRIAGEE---------ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRF 312
Query: 550 RKMKLLKKRQKKAHLMEI 567
R ++ Q + +
Sbjct: 313 RDAARPRREQPPVDITYV 330
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
K +ME+ L GG + ++ WA + L + + + VF ID IGVTKG G + V
Sbjct: 160 KSPEIMEMGLTGGDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVV 216
>gi|374635578|ref|ZP_09707174.1| ribosomal protein L3 [Methanotorris formicicus Mc-S-70]
gi|373561880|gb|EHP88105.1| ribosomal protein L3 [Methanotorris formicicus Mc-S-70]
Length = 335
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 56/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GS+ F P+KR+ R +++ +P++D V L AF YKAGM+H + + + P
Sbjct: 4 KRNRPRRGSLAFSPRKRAKRPVPRIRSWPEEDK---VRLQAFPVYKAGMSHALVKENNPK 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S +E+ +TILE P + + G+ Y + GL++ VWA+ L +E R+ K
Sbjct: 61 SPNANQEVFTPITILEAPDINVFGIRVYGKDTRGLKTLTEVWADELDEELARKI-----K 115
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ K K + + D L K + +RV+ HT + +L
Sbjct: 116 TLPKKEEKKTVEELDSLVDKIVD------------VRVLVHTNPKNTTLP---------- 153
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+KK ++EI++ G + +++ +A++ L + + +
Sbjct: 154 --------------------------KKKPEVLEIRIGGKDIQERLNYAKEILGKKLSIT 187
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF++ E +D I VTKGKGF+G++
Sbjct: 188 DVFSEGEFVDAIAVTKGKGFQGQV 211
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G + +++ +A++ L + + + VF++ E +D I VTKGKGF+G R
Sbjct: 154 KKKPEVLEIRIGGKDIQERLNYAKEILGKKLSITDVFSEGEFVDAIAVTKGKGFQGQVKR 213
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + K + R V IG W P R+ +TV GQ GYH RTE NK+I ++G
Sbjct: 214 WGVKIQFGKHQRKSVGRHVGSIGPWTPKRIMWTVPMPGQMGYHQRTEYNKRILKIG 269
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V IG W P R+ +TV GQ GYH RTE Y ++K S + IT
Sbjct: 230 RHVGSIGPWTPKRIMWTVPMPGQMGYHQRTE-------YNKRILKIGNSGE------EIT 276
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGF HYG V N+++++KG GP KR++ LR
Sbjct: 277 PKGGFLHYGVVRNNYVVVKGSVPGPAKRLVVLR 309
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV-- 616
+KK ++EI++ G + +++ +A++ L + + + VF++ E +D I VTKGKGF+ V
Sbjct: 154 KKKPEVLEIRIGGKDIQERLNYAKEILGKKLSITDVFSEGEFVDAIAVTKGKGFQGQVKR 213
Query: 617 ---------HSNASCAKYFKSLG 630
H S ++ S+G
Sbjct: 214 WGVKIQFGKHQRKSVGRHVGSIG 236
>gi|408381922|ref|ZP_11179469.1| 50S ribosomal protein L3P [Methanobacterium formicicum DSM 3637]
gi|407815370|gb|EKF85955.1| 50S ribosomal protein L3P [Methanobacterium formicicum DSM 3637]
Length = 336
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 115/259 (44%), Gaps = 58/259 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFP-KDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKI 104
PR GS+ F P+KR+AR + +P +++P L F GYK GMTH+ + + S
Sbjct: 7 PRKGSVAFSPRKRAARESPTISSWPEREEP----GLLGFPGYKVGMTHVTQLDNTKNSPT 62
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQ 164
EI VT++ETPP+V++G+ Y T GL++ V A ++ +R+
Sbjct: 63 EGMEISTPVTVVETPPIVVMGIRAYTRTSRGLKAMTDVLASEFDEDLKRKI--------- 113
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
++ + ++ ++L K+ + IR + HT+ + S+
Sbjct: 114 ----SVPAEYDSEAQLASLKENLDKVVE----IRALIHTKPRMASVP------------- 152
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
+KK LME + G SV DK+ +A L + I VF
Sbjct: 153 -----------------------KKKPELMECGIGGNSVEDKLDYAAGVLGKEINPADVF 189
Query: 285 AQDEMIDCIGVTKGKGFKG 303
A E D I VTKGKGF+G
Sbjct: 190 ADGEHTDAIAVTKGKGFQG 208
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK LME + G SV DK+ +A L + I VFA E D I VTKGKGF+GV R
Sbjct: 153 KKKPELMECGIGGNSVEDKLDYAAGVLGKEINPADVFADGEHTDAIAVTKGKGFQGVIKR 212
Query: 375 WHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W + K + R V IG W P+R +TV AGQ GYH RTE NKKI ++G
Sbjct: 213 WGVRIQYGKAARSSKARVVGSIGPWTPARTMWTVPMAGQMGYHQRTEFNKKILKIG 268
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 545 RVITLRKMKLLKKR-----QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 599
+V+ +R + K R +KK LME + G SV DK+ +A L + I VFA E
Sbjct: 134 KVVEIRALIHTKPRMASVPKKKPELMECGIGGNSVEDKLDYAAGVLGKEINPADVFADGE 193
Query: 600 MIDCIGVTKGKGFKECV 616
D I VTKGKGF+ +
Sbjct: 194 HTDAIAVTKGKGFQGVI 210
>gi|297619637|ref|YP_003707742.1| 50S ribosomal protein L3 [Methanococcus voltae A3]
gi|297378614|gb|ADI36769.1| ribosomal protein L3 [Methanococcus voltae A3]
Length = 333
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 58/260 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ R K++ +P D+ V L A+ YKAG+TH + + P S
Sbjct: 8 PRRGSLAFSPRKRAKRIVPKIRSWPVDEK---VRLQAYPVYKAGVTHALYVENNPKSPNA 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
++E+ VT+LETP + I G+ Y + +GL+ VWA L QE R+
Sbjct: 65 EQEVASPVTVLETPNITIAGIRVYKKDTNGLKVLTEVWAPELDQELARK----------- 113
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T A K+ + L + +RVI +T ++ ++
Sbjct: 114 -LTVAKKELKS-------VDTLDSLINEIVDVRVIVYTIPKETAIA-------------- 151
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+KK ++EI++ G SV +++ +A+ L Q + + VF
Sbjct: 152 ----------------------KKKPEVVEIRVGGSSVDERLNYAKGILGQKLSINDVFE 189
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E+ID + VTKGKGF+G +
Sbjct: 190 AGEIIDTVAVTKGKGFQGSV 209
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SV +++ +A+ L Q + + VF E+ID + VTKGKGF+G R
Sbjct: 152 KKKPEVVEIRVGGSSVDERLNYAKGILGQKLSINDVFEAGEIIDTVAVTKGKGFQGSVKR 211
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
W K + + KG+ R IG W P RV ++V GQ G+H RTE NK+I+++GA
Sbjct: 212 WGIKIQFGKHQRKGVGRHTGSIGPWRPRRVMWSVPLPGQMGFHQRTEYNKRIFKIGA 268
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI K +KK ++EI++ G SV +++ +A+ L Q + + VF E+ID +
Sbjct: 138 RVIVYTIPKETAIAKKKPEVVEIRVGGSSVDERLNYAKGILGQKLSINDVFEAGEIIDTV 197
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ V
Sbjct: 198 AVTKGKGFQGSV 209
>gi|289191591|ref|YP_003457532.1| 50S ribosomal protein L3 [Methanocaldococcus sp. FS406-22]
gi|288938041|gb|ADC68796.1| ribosomal protein L3 [Methanocaldococcus sp. FS406-22]
Length = 335
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 58/264 (21%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
+ PR GS+ F P+KR+ R +++ +P+++ V L AF YKAGM+H + D P S
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPEEET---VRLQAFPVYKAGMSHAFIKEDNPKS 61
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYKNWYK 161
+EI +TILE PP+ + + Y L + VWA++L +E R+
Sbjct: 62 PNAGQEIFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI------ 115
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
K K +KT+ +DL + + +RV+ HT + L
Sbjct: 116 -----------KLPKKEDRKTV-EDLEALKDKIEDVRVLVHTNPKLTCLP---------- 153
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+KK ++EI++ G + +++ +A++ L + + +
Sbjct: 154 --------------------------KKKPEILEIRIGGKDIEERLNYAKEILGKQLNIT 187
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF + E++D IGVTKGKGF+G++
Sbjct: 188 DVFQEGELVDTIGVTKGKGFQGQV 211
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G + +++ +A++ L + + + VF + E++D IGVTKGKGF+G R
Sbjct: 154 KKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKR 213
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + KG+ R V IG W P V ++V GQ GYH RTE NK+I ++G
Sbjct: 214 WGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG 269
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + KG+ R V IG W P V ++V GQ GYH RTE K+ L
Sbjct: 213 RWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEY---NKRILK-- 267
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
I NN ITP GGF HYG + N+++++KG GP KR+I LR+
Sbjct: 268 IGNNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRR 310
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ KL +KK ++EI++ G + +++ +A++ L + + + VF + E++D I
Sbjct: 140 RVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTI 199
Query: 605 GVTKGKGFK 613
GVTKGKGF+
Sbjct: 200 GVTKGKGFQ 208
>gi|297832722|ref|XP_002884243.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330083|gb|EFH60502.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 78
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%), Gaps = 3/76 (3%)
Query: 83 FIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTV 142
F+GYKAGMTHIVRE +PGS+ +K+E EAVT++ETPPMV V+GYV+ P GL + TV
Sbjct: 6 FLGYKAGMTHIVREVVKPGSQHHKEETCEAVTMIETPPMV---VVGYVKIPDGLSTRSTV 62
Query: 143 WAEHLSQECRRRFYKN 158
WA+HLS+E RRRFYKN
Sbjct: 63 WAQHLSEEVRRRFYKN 78
>gi|296242583|ref|YP_003650070.1| 50S ribosomal protein L3P [Thermosphaera aggregans DSM 11486]
gi|296095167|gb|ADG91118.1| LSU ribosomal protein L3P [Thermosphaera aggregans DSM 11486]
Length = 395
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 134/284 (47%), Gaps = 34/284 (11%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFP-------------KDDP-----TKPVHL 80
HRK APR GS+G P+KR+ +V+ +P KD +KPV L
Sbjct: 2 GHRKLHAPRRGSLGVRPRKRAEELTPRVRTWPAKTWAELLLEKYGKDAEKHGVVSKPV-L 60
Query: 81 TAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGY-VETPHGLRSF 139
F YKAGMTH + DRP + KE+ VTIL+ PPMVI+G+ Y V GL S
Sbjct: 61 LGFAAYKAGMTHALMVEDRPNTPFTGKEVFTPVTILDAPPMVILGLRAYSVGEQGGLVSL 120
Query: 140 KTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRV 199
W + E + Y+ +Y S+ T+ D + +K + Q LRK+ +++
Sbjct: 121 GEAWRSPV--EAVGKAYEEYY-SKNPLLTERV----DSVVRKYL-QGLRKLNH--GLVKP 170
Query: 200 IAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLN 259
+ + + N + K + NV + + + V K KK ++EI++
Sbjct: 171 DPTGKYGFKFVETNWEEAFK-KVFTGNVVEVRALASTIPVLSGFAK---KKPEIVEIKIG 226
Query: 260 GGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
GG V + + + L + V VF + + ID IGVTKGKGF+G
Sbjct: 227 GGKVEEIVKYGESVLGGLVTVRDVFTEGQFIDVIGVTKGKGFQG 270
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ GG V + + + L + V VF + + ID IGVTKGKGF+GV R
Sbjct: 215 KKKPEIVEIKIGGGKVEEIVKYGESVLGGLVTVRDVFTEGQFIDVIGVTKGKGFQGVVKR 274
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMG 428
+ K LPR K KG RK IG+ P+ + +AGQ G+H RT+ NK+I R+G
Sbjct: 275 FGVKVLPRWHKHRKGARK---IGSRSPAFGTMSEPPQAGQTGFHRRTDYNKRILRIG 328
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K LPR K KG RK IG+ P+ + +AGQ G+H R
Sbjct: 261 GVTKGKGFQGVVKRFGVKVLPRWHKHRKGARK---IGSRSPAFGTMSEPPQAGQTGFHRR 317
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
T+ N +TP GGF HYG V +LM+KG GP KR+
Sbjct: 318 TDY-------------NKRILRIGFNGLEVTPSGGFLHYGLVYGPYLMLKGTVFGPAKRL 364
Query: 547 ITLR 550
+ LR
Sbjct: 365 LILR 368
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ GG V + + + L + V VF + + ID IGVTKGKGF+ V
Sbjct: 215 KKKPEIVEIKIGGGKVEEIVKYGESVLGGLVTVRDVFTEGQFIDVIGVTKGKGFQGVV 272
>gi|443691463|gb|ELT93305.1| hypothetical protein CAPTEDRAFT_218970 [Capitella teleta]
Length = 118
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 56/70 (80%)
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+IKNN ST+YD+TEK+ITPMGGFPHYGEVN DF+M+ GCCMGPKKRVITLRK L ++
Sbjct: 12 LIKNNGSTEYDVTEKTITPMGGFPHYGEVNQDFIMLGGCCMGPKKRVITLRKSLLTHTKR 71
Query: 560 KKAHLMEIQL 569
K M ++
Sbjct: 72 KALEKMNLKF 81
>gi|76803057|ref|YP_331152.1| 50S ribosomal protein L3P [Natronomonas pharaonis DSM 2160]
gi|109893528|sp|Q3IMY8.1|RL3_NATPD RecName: Full=50S ribosomal protein L3P
gi|76558922|emb|CAI50518.1| 50S ribosomal protein L3 [Natronomonas pharaonis DSM 2160]
Length = 336
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+ R+A + +P DD +P L F GYKAGM+H+V D P S
Sbjct: 5 SRPRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
+E VT++ETPPM V V Y +TP+G R VW + + ++ R
Sbjct: 63 REGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLER---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+ + ++ D G A D +A +RVI HT
Sbjct: 113 --SLSVPEEQSGDIEGDIRTALDEGALAD----VRVITHTVPG----------------A 150
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVG 281
S+V K +PD +ME ++ GGS++D++ +A ++ V
Sbjct: 151 LSSVPKKEPD-------------------VMETRVGGGSLSDRVDFALDLVDDGGEHTVT 191
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
VF E D G+TKGKG +G + + K++ K A
Sbjct: 192 DVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHA 228
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K+ +ME ++ GGS++D++ +A ++ V VF E D G+TKGKG +G
Sbjct: 156 KKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPV 215
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 216 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLGDD 275
Query: 431 IHTKDG 436
+ DG
Sbjct: 276 DVSPDG 281
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 26/158 (16%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV F + G H T+ ++R G AGI G RW +K K
Sbjct: 173 DRVDFALDLVDDGGEHTVTD----VFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHA 228
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + DL
Sbjct: 229 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLI------------DLG 273
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ ++P GGF +YGEV+ + ++KG GP KR++ R
Sbjct: 274 DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFR 311
>gi|288560108|ref|YP_003423594.1| 50S ribosomal protein L3 [Methanobrevibacter ruminantium M1]
gi|288542818|gb|ADC46702.1| ribosomal protein L3P Rpl3p [Methanobrevibacter ruminantium M1]
Length = 336
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 60/260 (23%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR A+ ++K +P ++ K L GYKAGMTH + + S +
Sbjct: 7 PRKGSVAFSPRKRVAKETPRIKAWPSNEEPK---LLGLAGYKAGMTHAMVVDNDKNSPSH 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY--KNWYKSR 163
E+ VT+LE PP+VI+G+ Y +T HGL++ V A++L +E R+ K++ +S
Sbjct: 64 GMEVFTPVTVLEVPPLVILGIRSYEKTAHGLKAITEVIADNLDEELSRKITLPKDYDQS- 122
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+A K QD L K + +RV+ HT + S+
Sbjct: 123 -----EAIAKIQDALEK-------------TEEVRVLVHTNPKMASVP------------ 152
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
+KK + E L G S +K+ +A L Q I +
Sbjct: 153 ------------------------KKKPEIFECALGGSSAEEKLNYALGILGQEIRASDI 188
Query: 284 FAQDEMIDCIGVTKGKGFKG 303
F++ + +D I TKGKG +G
Sbjct: 189 FSEGQYVDAIATTKGKGVQG 208
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
K+ +KK + E L G S +K+ +A L Q I +F++ + +D I TKGKG
Sbjct: 147 KMASVPKKKPEIFECALGGSSAEEKLNYALGILGQEIRASDIFSEGQYVDAIATTKGKGV 206
Query: 369 KGVTSRWHTK---KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+GV RW+ + ++ KG R V IG W P R +TVA+AGQ GYH RTE NKK+
Sbjct: 207 QGVVKRWNIRIQYGKAMRSGKG-RHVGSIGPWSPERTMWTVAQAGQMGYHKRTEFNKKVI 265
Query: 426 RMG 428
++G
Sbjct: 266 KIG 268
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 65/120 (54%), Gaps = 15/120 (12%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V IG W P R +TVA+AGQ GYH RTE KK VIK ++ D ++
Sbjct: 229 RHVGSIGPWSPERTMWTVAQAGQMGYHKRTEF---NKK----VIKIGDVSEVD----AVN 277
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADK 577
P GGF YG V ND++++KG GP KR++ LR+ R KKA Q+N S A K
Sbjct: 278 PAGGFIRYGLVKNDYVLVKGSVPGPTKRLVILRQA----IRPKKADDAAPQVNYISTASK 333
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ K+ +KK + E L G S +K+ +A L Q I +F++ + +D I
Sbjct: 139 RVLVHTNPKMASVPKKKPEIFECALGGSSAEEKLNYALGILGQEIRASDIFSEGQYVDAI 198
Query: 605 GVTKGKGFKECV 616
TKGKG + V
Sbjct: 199 ATTKGKGVQGVV 210
>gi|397773843|ref|YP_006541389.1| ribosomal protein L3 [Natrinema sp. J7-2]
gi|448341390|ref|ZP_21530351.1| 50S ribosomal protein L3P [Natrinema gari JCM 14663]
gi|397682936|gb|AFO57313.1| ribosomal protein L3 [Natrinema sp. J7-2]
gi|445628072|gb|ELY81383.1| 50S ribosomal protein L3P [Natrinema gari JCM 14663]
Length = 339
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 61/281 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ PR GS+GF P++R+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NTPRKGSLGFGPRQRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G++ VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGMKPITEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D+ +LR + + +V +RVI HT
Sbjct: 115 ----------DLPGDEYDTDAATDELRGLQEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ GGSV D++ +A + +E
Sbjct: 149 -------------------VPGDVPSVPKKKPDVMETRVGGGSVDDRVDFALETIEDGGE 189
Query: 280 --VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 HVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV D++ +A + +E + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVDDRVDFALETIEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGEG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVDFALETIEDGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 231 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGEGADATVD---- 283
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 -------GGFVNYGEVDGPHALIKGSLPGPQQRLVRFR 314
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK +ME ++ GGSV D++ +A + +E + VF E +D GVTKGKG + V
Sbjct: 158 KKKPDVMETRVGGGSVDDRVDFALETIEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
>gi|327400872|ref|YP_004341711.1| 50S ribosomal protein L3 [Archaeoglobus veneficus SNP6]
gi|327316380|gb|AEA46996.1| ribosomal protein L3 [Archaeoglobus veneficus SNP6]
Length = 329
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 60/260 (23%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+GF P+KR++ +++ +P+ T+ L F GYK GMTH+V DR S
Sbjct: 6 PRRGSLGFSPRKRASSIVPRIRAWPECSETR---LLGFAGYKVGMTHVVMVDDRKNSLTY 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+EIV VT++ETPPM + G+ Y +TP+G++ VW+ L RR
Sbjct: 63 GEEIVVPVTVIETPPMKVAGIRVYRKTPYGMQIAGEVWSSDLDNFLGRRL---------- 112
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+L KK+ + K +RVI +TQ + +
Sbjct: 113 -----------QLPKKSPDVEKLKEIDDAAEVRVITYTQPY----------------LIT 145
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K PD E V GG V+ + +A + L + I V +V++
Sbjct: 146 GIPKKVPDVMEHKV--------------------GGDVSSALDYAIEKLGKEIRVSEVYS 185
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
+ +ID + +TKGKGF+G +
Sbjct: 186 EGAIIDVLSITKGKGFQGPV 205
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 327 GGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK 386
GG V+ + +A + L + I V +V+++ +ID + +TKGKGF+G RW L K +
Sbjct: 160 GGDVSSALDYAIEKLGKEIRVSEVYSEGAIIDVLSITKGKGFQGPVKRWGVITLDAKHAR 219
Query: 387 GL--RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
R+V C+G W+P +++TV +AGQ G+H RTE NK+I ++G
Sbjct: 220 SSKHRRVGCLGPWNPHHIRWTVPQAGQMGFHQRTEFNKRIIKIG 263
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 13/93 (13%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R+V C+G W+P +++TV +AGQ G+H RTE K+ + I + S +T
Sbjct: 224 RRVGCLGPWNPHHIRWTVPQAGQMGFHQRTEF---NKRIIK--IGEDGS--------EVT 270
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG V +D+++I G G KR+I +R
Sbjct: 271 PNGGFPHYGVVRSDYVLISGSVPGSVKRLIRMR 303
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 545 RVITLRKMKLLKKRQKKA-HLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RVIT + L+ KK +ME ++ GG V+ + +A + L + I V +V+++ +ID
Sbjct: 134 RVITYTQPYLITGIPKKVPDVMEHKV-GGDVSSALDYAIEKLGKEIRVSEVYSEGAIIDV 192
Query: 604 IGVTKGKGFKECV 616
+ +TKGKGF+ V
Sbjct: 193 LSITKGKGFQGPV 205
>gi|333911089|ref|YP_004484822.1| 50S ribosomal protein L3 [Methanotorris igneus Kol 5]
gi|333751678|gb|AEF96757.1| ribosomal protein L3 [Methanotorris igneus Kol 5]
Length = 335
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 56/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GS+ F P+KR+ R +++ +P +D V L AF YKAGM+H + + + P
Sbjct: 4 KRNRPRRGSLAFSPRKRAKRPVPRIRSWPDEDK---VRLQAFPVYKAGMSHALVKENNPN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S +E+ +TILE P + + + Y + GL++ VWA+ L +E R+
Sbjct: 61 SPNANQEVFTPITILEAPDINVFAIRVYGKDTRGLKTLTEVWADELDKELARKI------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
K K +KT+ +L + +RV+ HT + L
Sbjct: 115 ----------KTLPKKEERKTV-DELDNLIDKIADVRVLVHTNPKLTCLP---------- 153
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+KK ++EI++ G + +++ +A++ L + + +
Sbjct: 154 --------------------------KKKPEVLEIRIGGKDIQERLNYAKEILGKKVSIT 187
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF++ E +D I +TKGKGF+G++
Sbjct: 188 DVFSEGEFVDTIAITKGKGFQGQV 211
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G + +++ +A++ L + + + VF++ E +D I +TKGKGF+G R
Sbjct: 154 KKKPEVLEIRIGGKDIQERLNYAKEILGKKVSITDVFSEGEFVDTIAITKGKGFQGQVKR 213
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + KG+ R V IG W P RV +TV GQ GYH RTE NK+I ++G
Sbjct: 214 WGVKIQFGKHQRKGVGRHVGSIGPWTPKRVMWTVPMPGQMGYHQRTEYNKRILKIG 269
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + KG+ R V IG W P RV +TV GQ GYH RTE K+ L
Sbjct: 213 RWGVKIQFGKHQRKGVGRHVGSIGPWTPKRVMWTVPMPGQMGYHQRTE---YNKRILK-- 267
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I NN + ITP GGF HYG + N+++++KG GP KR++ LR
Sbjct: 268 IGNNG--------EEITPKGGFLHYGVIRNNYVVVKGSVPGPAKRLVVLR 309
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ KL +KK ++EI++ G + +++ +A++ L + + + VF++ E +D I
Sbjct: 140 RVLVHTNPKLTCLPKKKPEVLEIRIGGKDIQERLNYAKEILGKKVSITDVFSEGEFVDTI 199
Query: 605 GVTKGKGFK 613
+TKGKGF+
Sbjct: 200 AITKGKGFQ 208
>gi|429190344|ref|YP_007176022.1| 50S ribosomal protein L3 [Natronobacterium gregoryi SP2]
gi|448326256|ref|ZP_21515623.1| 50S ribosomal protein L3P [Natronobacterium gregoryi SP2]
gi|429134562|gb|AFZ71573.1| archaeal ribosomal protein L3 [Natronobacterium gregoryi SP2]
gi|445612913|gb|ELY66630.1| 50S ribosomal protein L3P [Natronobacterium gregoryi SP2]
Length = 339
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 120/284 (42%), Gaps = 67/284 (23%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P+KR+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRKRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDQAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+GL VW + + E R
Sbjct: 61 SPTEGMEQTVPVTIVETPPMRAVALRAYEDTPYGLNPVTEVWTDEFADELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D +LR + + +V +RVI HT
Sbjct: 115 ----------DLPGDDYDSDAAEDELRGLLEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V ++ +KK +ME ++ GGSV +++ + LE +
Sbjct: 149 -------------------VPSEVPSMPKKKPDVMETRVGGGSVEERVDFG---LELLVD 186
Query: 280 VGQ-----VFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 187 GGEHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 11/130 (8%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ-----VFAQDEMIDCIGVTKGKGFK 369
+KK +ME ++ GGSV +++ + LE + G+ VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEERVDFG---LELLVDGGEHVMNDVFRAGEYVDASGVTKGKGTQ 214
Query: 370 GVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ M
Sbjct: 215 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDM 274
Query: 428 GAGIH-TKDG 436
G G T DG
Sbjct: 275 GNGADATVDG 284
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFGLELLVDGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + M +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDMGNGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP+KR++ R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPEKRLVRFR 314
>gi|448338134|ref|ZP_21527186.1| 50S ribosomal protein L3P [Natrinema pallidum DSM 3751]
gi|445623309|gb|ELY76731.1| 50S ribosomal protein L3P [Natrinema pallidum DSM 3751]
Length = 339
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 61/281 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ PR GS+GF P++R+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NTPRKGSLGFGPRQRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G++ VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGMKPITEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D+ +LR + + +V +RVI HT
Sbjct: 115 ----------DLPGDEYDTDAATDELRGLQEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ GGSV D++ +A + +E
Sbjct: 149 -------------------VPGDVPSVPKKKPDVMETRVGGGSVGDRVDFALEIIEDGGE 189
Query: 280 --VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 HVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV D++ +A + +E + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVGDRVDFALEIIEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGDG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVDFALEIIEDGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 231 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD---- 283
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 -------GGFVNYGEVDGPHALIKGSLPGPQQRLVRFR 314
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK +ME ++ GGSV D++ +A + +E + VF E +D GVTKGKG + V
Sbjct: 158 KKKPDVMETRVGGGSVGDRVDFALEIIEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
>gi|159145604|gb|ABW90339.1| putative ribosomal protein L3 [Sipunculus nudus]
Length = 59
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/58 (81%), Positives = 52/58 (89%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
SHR FSAPRHGS+GF PKKRS RHRG+VK FPKDD +KPVHLTAF+ YKAGMTH+VRE
Sbjct: 2 SHRTFSAPRHGSLGFLPKKRSKRHRGEVKAFPKDDASKPVHLTAFLTYKAGMTHVVRE 59
>gi|448377806|ref|ZP_21560502.1| 50S ribosomal protein L3P [Halovivax asiaticus JCM 14624]
gi|445655750|gb|ELZ08595.1| 50S ribosomal protein L3P [Halovivax asiaticus JCM 14624]
Length = 340
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 118/278 (42%), Gaps = 58/278 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
PR GS+GF P+KR+ + + +P DD PT L F GYKAGMTH+V D S
Sbjct: 7 PRKGSLGFGPRKRATSEVPRFRSWPDDDGQPT----LQGFAGYKAGMTHVVTVDDAANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VTI+ETPPM I + Y E+P+G + VWA+ L E R
Sbjct: 63 TEGMETTVPVTIVETPPMAIAALRAYEESPYGQQPVAEVWADELDDELERTL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+ T A D ++ +R I +T + I
Sbjct: 115 --DLPGDDYDRDAAADEFTAALDEGRVDD----VRAITYTTPGE---------------I 153
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---V 280
QS V KT+PD +ME ++ GGSV D++ + LE +
Sbjct: 154 QS-VPKTKPD-------------------VMETRIGGGSVDDRVEFGLDLLEADGGEHVM 193
Query: 281 GQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
VF E +D GVTKGKG +G + + K++ K A
Sbjct: 194 NDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 6/126 (4%)
Query: 317 KAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKGVTS 373
K +ME ++ GGSV D++ + LE + VF E +D GVTKGKG +G
Sbjct: 160 KPDVMETRIGGGSVDDRVEFGLDLLEADGGEHVMNDVFRAGEYVDASGVTKGKGTQGPVK 219
Query: 374 RWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 220 RWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLLAIGDGA 279
Query: 432 H-TKDG 436
T DG
Sbjct: 280 DATVDG 285
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 24/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV+F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVEFGLDLLEADGGEH---VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ L++ +A+ D
Sbjct: 232 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLLAIGDGADATVD---- 284
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP +R+I R
Sbjct: 285 -------GGFVNYGEVDGPHALIKGSLPGPSQRLIRFR 315
>gi|448345585|ref|ZP_21534474.1| 50S ribosomal protein L3P [Natrinema altunense JCM 12890]
gi|445633518|gb|ELY86705.1| 50S ribosomal protein L3P [Natrinema altunense JCM 12890]
Length = 339
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 61/281 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ PR GS+GF P++R+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NTPRKGSLGFGPRQRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKSN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G++ VW + E R
Sbjct: 61 SPTEGMEQTVPVTIVETPPMRAVALRAYEDTPYGMKPITEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D+ +LR + + +V +RVI HT
Sbjct: 115 ----------DLPGDEYDTDAATDELRGLQEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ GGSV D++ +A + +E
Sbjct: 149 -------------------VPGDVPSVPKKKPDVMETRVGGGSVDDRVDFALEIIEDGGE 189
Query: 280 --VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 HVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV D++ +A + +E + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVDDRVDFALEIIEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGDG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVDFALEIIEDGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 231 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD---- 283
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 -------GGFVNYGEVDGPHALIKGSLPGPQQRLVRFR 314
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK +ME ++ GGSV D++ +A + +E + VF E +D GVTKGKG + V
Sbjct: 158 KKKPDVMETRVGGGSVDDRVDFALEIIEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
>gi|15678033|ref|NP_275147.1| 50S ribosomal protein L3P [Methanothermobacter thermautotrophicus
str. Delta H]
gi|3122720|sp|O26110.1|RL3_METTH RecName: Full=50S ribosomal protein L3P
gi|2621048|gb|AAB84521.1| ribosomal protein L3 (E.coli ) [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 337
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 57/261 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPK-DDPTKPVHLTAFIGYKAGMTHIVREADRPGSKI 104
PR GS+ F P+KR+AR +VK +P+ D+P L A GYKAGMTH++ ++ S
Sbjct: 7 PRKGSVAFSPRKRAARETPRVKSWPQVDEP----GLLALAGYKAGMTHVMMVDNQKNSPT 62
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQ 164
E+ VTILE PP+ ++ V Y +T GL++ V A + RR+
Sbjct: 63 EGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKLTPP------ 116
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
D ++ + +R +Y +RVI HT + S+
Sbjct: 117 ----------ADDYDQEAAIEKIRSNMEYVADVRVIVHTNPRLASVP------------- 153
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
+KK + E L G + +K +A + L + + ++F
Sbjct: 154 -----------------------KKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIF 190
Query: 285 AQDEMIDCIGVTKGKGFKGEM 305
++ +D I VTKGKGF+G +
Sbjct: 191 SEGAFVDAIAVTKGKGFQGPV 211
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
+L +KK + E L G + +K +A + L + + ++F++ +D I VTKGKGF
Sbjct: 148 RLASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGF 207
Query: 369 KGVTSRWHTK---KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+G RW + ++ KG R + +G W PSR +TV +AGQ GYH RTE NK+I
Sbjct: 208 QGPVKRWGIRIQYGKAARSSKG-RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQIL 266
Query: 426 RMG 428
++G
Sbjct: 267 KIG 269
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 452 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDL 511
++ KG R + +G W PSR +TV +AGQ GYH RTE Y ++K +++ DL
Sbjct: 225 RSSKG-RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTE-------YNKQILKIGDASEADL 276
Query: 512 TEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNG 571
+ P GGF YG V ND++MIKG GP KR++ LRK +Q++A Q+N
Sbjct: 277 ----VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAIRAAGKQEEAP----QINY 328
Query: 572 GSVADK 577
S A K
Sbjct: 329 ISTASK 334
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +L +KK + E L G + +K +A + L + + ++F++ +D I
Sbjct: 140 RVIVHTNPRLASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAI 199
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ V
Sbjct: 200 AVTKGKGFQGPV 211
>gi|296109263|ref|YP_003616212.1| 50S ribosomal protein L3 [methanocaldococcus infernus ME]
gi|295434077|gb|ADG13248.1| ribosomal protein L3 [Methanocaldococcus infernus ME]
Length = 333
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G + +++ +A++ L + + + VF + E++D IGVTKGKGF+GV R
Sbjct: 152 KKKPEILEIRIGGKDLEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGVVKR 211
Query: 375 WHTKKLPRK-THKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K PRK +G+ R V IG W P + +TV R GQ GYH RTE NK+I ++G
Sbjct: 212 WGVKIQPRKHRRQGVGRHVGSIGPWQPKMIMWTVPRPGQMGYHQRTEYNKRILKIG 267
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 58/263 (22%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K+ PR GS+GF P+KR+ R +++ +P +D V L AF YKAGMTH + + D
Sbjct: 2 KYHTPRRGSLGFSPRKRAKRPVPRIRSWPDEDK---VRLQAFPVYKAGMTHGLIKEDNQK 58
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYKNWY 160
S +E+ +T+LE PP+ + G+ Y L + +WA++L +E R+
Sbjct: 59 SPRAGQEVFTPMTVLEAPPINVFGIRVYGRNERNYLTTLTEIWADNLDKELSRKI----- 113
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
K KK + K + L ++ + +RV+ HT + L
Sbjct: 114 --------KLPKKEERKG-----VEYLDEIKDKIEDVRVLVHTNPKLTCLP--------- 151
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
+KK ++EI++ G + +++ +A++ L + + +
Sbjct: 152 ---------------------------KKKPEILEIRIGGKDLEERLNYAKEILGKQLNI 184
Query: 281 GQVFAQDEMIDCIGVTKGKGFKG 303
VF + E++D IGVTKGKGF+G
Sbjct: 185 TDVFQEGELVDTIGVTKGKGFQG 207
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 67/123 (54%), Gaps = 15/123 (12%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRK-THKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G+ G V RW K PRK +G+ R V IG W P + +TV R GQ GYH RT
Sbjct: 198 GVTKGKGFQGVVKRWGVKIQPRKHRRQGVGRHVGSIGPWQPKMIMWTVPRPGQMGYHQRT 257
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
E K+ L I NN + ITP GGFPHYG + N+++++KG GP+KR+I
Sbjct: 258 E---YNKRILK--IGNNG--------EEITPEGGFPHYGVIKNNYVILKGSVQGPQKRLI 304
Query: 548 TLR 550
LR
Sbjct: 305 VLR 307
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ KL +KK ++EI++ G + +++ +A++ L + + + VF + E++D I
Sbjct: 138 RVLVHTNPKLTCLPKKKPEILEIRIGGKDLEERLNYAKEILGKQLNITDVFQEGELVDTI 197
Query: 605 GVTKGKGFKECV 616
GVTKGKGF+ V
Sbjct: 198 GVTKGKGFQGVV 209
>gi|325958531|ref|YP_004289997.1| 50S ribosomal protein L3 [Methanobacterium sp. AL-21]
gi|325329963|gb|ADZ09025.1| ribosomal protein L3 [Methanobacterium sp. AL-21]
Length = 337
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 55/258 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GSM F P+KR+A+ KV+ +P+ T+ L F GYK GMTH+ + S +
Sbjct: 7 PRSGSMAFSPRKRAAKETPKVRSWPE---TEESCLLGFPGYKVGMTHVTMLDNVKNSPTS 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E+ VTILETPP+V++GV Y + GL++ V A+ L ++ R+ + K
Sbjct: 64 GMEVSSPVTILETPPVVVMGVRAYRKDTRGLKTLNDVMAKDLDEDLTRKI------TLPK 117
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+ +K ++++ + IRV+ HT+ + + S
Sbjct: 118 DYDVEAK-----------LDEMKEQLDEVEDIRVLLHTKPR----------------LAS 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++E + G SV DK +AR L + + F+
Sbjct: 151 GIPKKKPE-------------------IIECGIGGKSVEDKFEFARSLLGKEVNPADSFS 191
Query: 286 QDEMIDCIGVTKGKGFKG 303
E +D I VTKGKGF+G
Sbjct: 192 DGEHVDTIAVTKGKGFQG 209
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++E + G SV DK +AR L + + F+ E +D I VTKGKGF+G R
Sbjct: 154 KKKPEIIECGIGGKSVEDKFEFARSLLGKEVNPADSFSDGEHVDTIAVTKGKGFQGPVKR 213
Query: 375 WHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+ + K + R V IG W P+R +TVA AGQ GYH RTE NKKI R+
Sbjct: 214 FGVRIQYGKAARSSKARHVGSIGPWTPARTMWTVAMAGQMGYHKRTEFNKKILRI 268
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V IG W P+R +TVA AGQ GYH RTE KK L I + + D +
Sbjct: 230 RHVGSIGPWTPARTMWTVAMAGQMGYHKRTEF---NKKILR--IADESQVD------EVN 278
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
P GGF YG + N ++MIKG GP KR++ LRK
Sbjct: 279 PKGGFVKYGLIKNGYVMIKGSIPGPSKRLVILRK 312
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++E + G SV DK +AR L + + F+ E +D I VTKGKGF+ V
Sbjct: 154 KKKPEIIECGIGGKSVEDKFEFARSLLGKEVNPADSFSDGEHVDTIAVTKGKGFQGPV 211
>gi|284165492|ref|YP_003403771.1| 50S ribosomal protein L3 [Haloterrigena turkmenica DSM 5511]
gi|284015147|gb|ADB61098.1| ribosomal protein L3 [Haloterrigena turkmenica DSM 5511]
Length = 339
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 120/282 (42%), Gaps = 63/282 (22%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
++PR GS+GF P+KR+ + +P DD +P L F GYKAGMTH+V D+ S
Sbjct: 5 NSPRKGSLGFGPRKRATSEVPRFNSWP-DDEGQPT-LQGFAGYKAGMTHVVMVDDKANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VTI+ETPPM V + Y ETP+G++ VW + E R
Sbjct: 63 TEGMEQTVPVTIVETPPMRAVALRAYEETPYGMKPVTEVWTDEFVPELDRVL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
D +LR + + +V +RVI HT
Sbjct: 115 --------DIPGDDYDTDAAEDELRGLLEQGRVDDVRVITHT------------------ 148
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
V ++ +KK +ME ++ GGSV D+I +A LE G
Sbjct: 149 -----------------VPSEIPSVPKKKPDVMETRVGGGSVEDRIDFA---LETVADGG 188
Query: 282 Q-----VFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 189 EHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 11/130 (8%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ-----VFAQDEMIDCIGVTKGKGFK 369
+KK +ME ++ GGSV D+I +A LE G+ VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEDRIDFA---LETVADGGEHVMNDVFRAGEYVDASGVTKGKGTQ 214
Query: 370 GVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +
Sbjct: 215 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDI 274
Query: 428 GAGIH-TKDG 436
G G T DG
Sbjct: 275 GDGADATVDG 284
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
R+ F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRIDFALETVADGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 231 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD---- 283
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 -------GGFVNYGEVDGPHALIKGSLPGPQQRLVRFR 314
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ-----VFAQDEMIDCIGVTKGKGFK 613
+KK +ME ++ GGSV D+I +A LE G+ VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEDRIDFA---LETVADGGEHVMNDVFRAGEYVDASGVTKGKGTQ 214
Query: 614 ECV 616
V
Sbjct: 215 GPV 217
>gi|229584895|ref|YP_002843397.1| 50S ribosomal protein L3P [Sulfolobus islandicus M.16.27]
gi|259709736|sp|C3N5S7.1|RL3_SULIA RecName: Full=50S ribosomal protein L3P
gi|228019945|gb|ACP55352.1| ribosomal protein L3 [Sulfolobus islandicus M.16.27]
Length = 351
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 127/271 (46%), Gaps = 52/271 (19%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK ++PR GS G P+KRS+ + +P+ + P L F+GYK GM+H+ D
Sbjct: 3 HRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDW 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKT-VWA----EHLSQECRRR 154
P S N KEI VT+LE PP++ + + Y G + T W+ + L R R
Sbjct: 62 PNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIR 121
Query: 155 FYKNWYKSRQKAFTKASKKWQDKLGKK--TIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
+ ++ K+ + + KK+++K G K I +L ++ + R++ TQ ++
Sbjct: 122 SFSSFLKNDE-----SKKKFEEKFGSKLDLIKSNLDRIVYF----RLLVATQPRK----- 167
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
++ K PD L+EIQ+ GG ++ +A
Sbjct: 168 -----------IPSLGKKVPD-------------------LVEIQIGGGEKKAQLDYALN 197
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
L + I + VF + ++ID +GVTKGKGF G
Sbjct: 198 VLGKEISIKDVFKEGQLIDVVGVTKGKGFAG 228
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF GV R
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKR 232
Query: 375 WHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+ +LPR K KG RK+ G PS + GQ G+H RTE NK+I ++G
Sbjct: 233 YSVVELPRWHKHRKGSRKIGTRGPSLGTPS----YTPQPGQLGFHRRTEYNKRIIKIG 286
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 76/180 (42%), Gaps = 35/180 (19%)
Query: 389 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELN--------KKIYRMG-----AGIHTKD 435
RK+ +G P V+ + G+K LN K +++ G G+
Sbjct: 166 RKIPSLGKKVPDLVEIQIG-GGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
Query: 436 GKVSVTSRWHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELFL 491
G V R+ +LPR K KG RK+ G PS + GQ G+H RTE
Sbjct: 225 GFAGVIKRYSVVELPRWHKHRKGSRKIGTRGPSLGTPS----YTPQPGQLGFHRRTE--- 277
Query: 492 CKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y +IK K I P GGF YG V N +++++G +G KKR I LR+
Sbjct: 278 ----YNKRIIKIGDDP------KEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLRE 327
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 609
RK+ L K K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKG
Sbjct: 166 RKIPSLGK--KVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKG 223
Query: 610 KGFKECV 616
KGF +
Sbjct: 224 KGFAGVI 230
>gi|395502503|ref|XP_003755619.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L3-like
[Sarcophilus harrisii]
Length = 358
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 122/264 (46%), Gaps = 78/264 (29%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S+ KF P+HG F P+K + KDD K +HLT F+GYK +T I RE D
Sbjct: 2 SYWKFFTPKHG---FLPQKIELK--------VKDDHIKLIHLTDFMGYKTDITXITREVD 50
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R SK+NKKE+V VTI+E M+I+ T++AE + KN
Sbjct: 51 RMDSKVNKKEVVWMVTIVEMSLMIII----------------TIFAELM--------MKN 86
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++K K W+ KK + ++ + KYC+VI + AHT
Sbjct: 87 WHKSKEKXCKYYKKWWEVD-SKKXLKKNFNNIKKYCQVIXLAAHT--------------- 130
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM LL RQKK +M+IQ+ V DK+ W + + Q +
Sbjct: 131 ---------------------QMLLLPLRQKKPEIMKIQV---XVTDKLEWTCEXMGQQV 166
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFK 302
P VF QD+M D VTK G+K
Sbjct: 167 P---VFGQDKMTDISEVTKINGYK 187
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M LL RQKK +M+IQ+ V DK+ W + + Q +PV F QD+M D VTK G
Sbjct: 132 MLLLPLRQKKPEIMKIQV---XVTDKLEWTCEXMGQQVPV---FGQDKMTDISEVTKING 185
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+K V S HTKKL KT +GL K+ C + F++A+AGQ G + + +NKKI+++
Sbjct: 186 YKDVASCCHTKKLSEKTLQGLHKLICTDFDTVTIXVFSLAQAGQMGCSYXSNINKKIHKI 245
Query: 428 GAGIHTKDGKV 438
G G K K+
Sbjct: 246 GXGYXIKFEKL 256
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 16/142 (11%)
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
+G V S HTKKL KT +GL K+ C + F++A+AGQ G + + + K
Sbjct: 184 NGYKDVASCCHTKKLSEKTLQGLHKLICTDFDTVTIXVFSLAQAGQMGCSYXSNI---NK 240
Query: 495 KY----------LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKK 544
K +IK+NASTD DL++K+I +GGF H EV ND ++ K C +G KK
Sbjct: 241 KIHKIGXGYXIKFEKLIKSNASTDXDLSDKNINHLGGFVHXSEVINDLIIQKVCVVGTKK 300
Query: 545 RVITLRKMKLLKKRQKKAHLME 566
V+ L K L K+H +E
Sbjct: 301 HVLILXKFLL---SXTKSHALE 319
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 551 KMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGK 610
+M LL RQKK +M+IQ+ V DK+ W + + Q +PV F QD+M D VTK
Sbjct: 131 QMLLLPLRQKKPEIMKIQV---XVTDKLEWTCEXMGQQVPV---FGQDKMTDISEVTKIN 184
Query: 611 GFKE---CVHSNASCAKYFKSL 629
G+K+ C H+ K + L
Sbjct: 185 GYKDVASCCHTKKLSEKTLQGL 206
>gi|410722182|ref|ZP_11361491.1| archaeal ribosomal protein L3 [Methanobacterium sp. Maddingley
MBC34]
gi|410597418|gb|EKQ52037.1| archaeal ribosomal protein L3 [Methanobacterium sp. Maddingley
MBC34]
Length = 336
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 60/260 (23%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFP-KDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKI 104
PR GS+ F P+KR+AR ++ +P +++P L F GYK GMTH+ + + S
Sbjct: 7 PRKGSVAFSPRKRAARESPRISSWPEREEPG----LLGFPGYKVGMTHVTQMDNTKNSPT 62
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF-YKNWYKSR 163
EI VT++ETPP+V++G+ Y +T G+++ V A + ++ +R+ Y S
Sbjct: 63 EGMEISTPVTVVETPPIVVMGIRAYTQTSRGIKAMTDVLAAEMDEDLKRKISIPVEYDSE 122
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+ +A KM + + IR + HT+ + S+
Sbjct: 123 AQ-----------------LASLKEKMDQVVE-IRALIHTKPRMASVP------------ 152
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
+KK L+E + G SV DK+ +A L + I V
Sbjct: 153 ------------------------KKKPELLECGIGGNSVEDKLEYAASVLGKEINPADV 188
Query: 284 FAQDEMIDCIGVTKGKGFKG 303
FA E D I VTKGKGF+G
Sbjct: 189 FADGEHTDAIAVTKGKGFQG 208
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK L+E + G SV DK+ +A L + I VFA E D I VTKGKGF+GV R
Sbjct: 153 KKKPELLECGIGGNSVEDKLEYAASVLGKEINPADVFADGEHTDAIAVTKGKGFQGVIKR 212
Query: 375 WHTK----KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W + K R + KG R V IG W P+R +TV AGQ GYH RTE NKKI ++G
Sbjct: 213 WGVRIQYGKAARSS-KG-RHVGSIGPWSPARTMWTVPMAGQMGYHQRTEYNKKILKIG 268
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R + K ++ +KK L+E + G SV DK+ +A L + I VFA E D I
Sbjct: 139 RALIHTKPRMASVPKKKPELLECGIGGNSVEDKLEYAASVLGKEINPADVFADGEHTDAI 198
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ +
Sbjct: 199 AVTKGKGFQGVI 210
>gi|448392361|ref|ZP_21567135.1| 50S ribosomal protein L3P [Haloterrigena salina JCM 13891]
gi|445664451|gb|ELZ17160.1| 50S ribosomal protein L3P [Haloterrigena salina JCM 13891]
Length = 339
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 120/282 (42%), Gaps = 63/282 (22%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
++PR GS+GF P+KR+ + +P DD +P L F GYKAGMTH+V D+ S
Sbjct: 5 NSPRKGSLGFGPRKRATSEVPRFNSWP-DDEGQPT-LQGFAGYKAGMTHVVMVDDKANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VTI+ETPPM V + Y ETP+G++ VW + E R
Sbjct: 63 TEGMEQTVPVTIVETPPMRAVALRAYEETPYGMKPVTEVWTDEFVPELDRVL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
D +LR + + +V +RVI HT
Sbjct: 115 --------DIPGDDYDTDAAEDELRGLLEQGRVDDVRVITHT------------------ 148
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
V ++ +KK +ME ++ GGSV D++ +A LE G
Sbjct: 149 -----------------VPSEIPSVPKKKPDVMETRVGGGSVEDRVDFA---LETVADGG 188
Query: 282 Q-----VFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 189 EHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 11/130 (8%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ-----VFAQDEMIDCIGVTKGKGFK 369
+KK +ME ++ GGSV D++ +A LE G+ VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEDRVDFA---LETVADGGEHVMNDVFRAGEYVDASGVTKGKGTQ 214
Query: 370 GVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +
Sbjct: 215 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDI 274
Query: 428 GAGIH-TKDG 436
G G T DG
Sbjct: 275 GDGADATVDG 284
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVDFALETVADGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 231 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD---- 283
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 -------GGFVNYGEVDGPHALIKGSLPGPQQRLVRFR 314
>gi|288931510|ref|YP_003435570.1| 50S ribosomal protein L3 [Ferroglobus placidus DSM 10642]
gi|288893758|gb|ADC65295.1| ribosomal protein L3 [Ferroglobus placidus DSM 10642]
Length = 329
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 117/265 (44%), Gaps = 62/265 (23%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPK-DDPTKPVHLTAFIGYKAGMTHIVREADRP 100
K+ PR GS+GF P+KR++ +++ +P D+P L F GYKAGMTH++ DR
Sbjct: 2 KYHRPRRGSLGFSPRKRASSIIPRIRSWPDCDEP----RLLGFAGYKAGMTHVIMIDDRK 57
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWY 160
S +EI+ VT+LETPPM ++G+ Y +T +GL+ VW + + RR
Sbjct: 58 NSPTYGEEIMVPVTVLETPPMKVMGIRVYRKTVYGLQIAGEVWTDEVDSYLSRRL----- 112
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
++ KK D K +RVI +TQ
Sbjct: 113 ----------------QIPKKKGDVDKLKEIDDIAEVRVITYTQPY-------------- 142
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
+ + V K PD E V GG V + +A + L + + V
Sbjct: 143 --LITGVPKKVPDVMEQKV--------------------GGDVEAALNYAIEKLGKEVRV 180
Query: 281 GQVFAQDEMIDCIGVTKGKGFKGEM 305
+VF + ID + +TKGKGF+G +
Sbjct: 181 NEVFKEGAFIDVLSITKGKGFQGPV 205
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 16/221 (7%)
Query: 212 QNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKI-AWA 270
+N ++ ++ + V +T P MK++ R + + +Q+ G D++ ++
Sbjct: 57 KNSPTYGEEIMVPVTVLETPP--------MKVMGIRVYRKTVYGLQIAGEVWTDEVDSYL 108
Query: 271 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSV 330
+ L+ P G V E ID I + + + + KK +ME Q GG V
Sbjct: 109 SRRLQIPKKKGDVDKLKE-IDDIAEVRVITYTQPYLITGVPKK---VPDVME-QKVGGDV 163
Query: 331 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGL-- 388
+ +A + L + + V +VF + ID + +TKGKGF+G RW L K +
Sbjct: 164 EAALNYAIEKLGKEVRVNEVFKEGAFIDVLSITKGKGFQGPVKRWGVITLDAKHARSSKH 223
Query: 389 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
R+V +G WHP RV++TV +AGQ G+H RTE NK+I ++G
Sbjct: 224 RRVGTLGPWHPHRVRWTVPQAGQMGFHQRTEYNKRILKIGT 264
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 13/93 (13%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R+V +G WHP RV++TV +AGQ G+H RTE Y ++K + + I
Sbjct: 224 RRVGTLGPWHPHRVRWTVPQAGQMGFHQRTE-------YNKRILKIGTNGE------DIN 270
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGF HYG V +D++++ G G KR++ +R
Sbjct: 271 PEGGFLHYGLVRSDYVLVSGSVPGSVKRLVRMR 303
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVIT + L+ KK + Q GG V + +A + L + + V +VF + ID +
Sbjct: 134 RVITYTQPYLITGVPKKVPDVMEQKVGGDVEAALNYAIEKLGKEVRVNEVFKEGAFIDVL 193
Query: 605 GVTKGKGFKECV 616
+TKGKGF+ V
Sbjct: 194 SITKGKGFQGPV 205
>gi|448362304|ref|ZP_21550915.1| 50S ribosomal protein L3P [Natrialba asiatica DSM 12278]
gi|445648825|gb|ELZ01773.1| 50S ribosomal protein L3P [Natrialba asiatica DSM 12278]
Length = 340
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 117/282 (41%), Gaps = 62/282 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P+KR+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRKRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPLTEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D A +LR + +V +RVI HT
Sbjct: 115 ----------DLPGDDYDTDASADELRGFLEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ G SV D++ +A + LE
Sbjct: 149 -------------------VPGDIPSMPKKKPDVMETRVGGSSVEDRVDYALELLEDGGG 189
Query: 280 ---VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ +F E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EHVMNDMFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKGV 371
+KK +ME ++ G SV D++ +A + LE + +F E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGSSVEDRVDYALELLEDGGGEHVMNDMFRAGEYVDASGVTKGKGTQGP 217
Query: 372 TSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 218 VKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGD 277
Query: 430 GIH-TKDG 436
G T DG
Sbjct: 278 GADATVDG 285
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 14/93 (15%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R++ +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 237 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD--------- 284
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++IKG GP+KR++ R
Sbjct: 285 --GGFINYGEVDGPHVLIKGSLPGPEKRLVRFR 315
>gi|304314253|ref|YP_003849400.1| 50S ribosomal protein L3P [Methanothermobacter marburgensis str.
Marburg]
gi|302587712|gb|ADL58087.1| 50S ribosomal protein L3P [Methanothermobacter marburgensis str.
Marburg]
Length = 337
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 57/259 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPK-DDPTKPVHLTAFIGYKAGMTHIVREADRPGSKI 104
PR GS+ F P+KR+AR +VK +P+ D+P L A GYKAGMTH++ ++ S
Sbjct: 7 PRKGSVAFSPRKRAARETPRVKSWPQVDEP----GLLALAGYKAGMTHVMMVDNQKNSPT 62
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQ 164
E+ VTILE PP+ ++ V Y +T GL++ V A ++ RR+ Q
Sbjct: 63 EGMEVSTPVTILEVPPLTVMAVRAYEKTSRGLKTLGEVLATETKEDLRRKLTPPAEDYDQ 122
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
+A + +R +Y +RVI HT + S+
Sbjct: 123 EAAI----------------ERIRSNMEYVADVRVIVHTNPRLASVP------------- 153
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
+KK + E L G + +K +A L + + ++F
Sbjct: 154 -----------------------KKKPEVFECGLGGKTPEEKFEYALGILGKDVRASEIF 190
Query: 285 AQDEMIDCIGVTKGKGFKG 303
++ +D I VTKGKGF+G
Sbjct: 191 SEGAFVDAIAVTKGKGFQG 209
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
+L +KK + E L G + +K +A L + + ++F++ +D I VTKGKGF
Sbjct: 148 RLASVPKKKPEVFECGLGGKTPEEKFEYALGILGKDVRASEIFSEGAFVDAIAVTKGKGF 207
Query: 369 KGVTSRWHTK---KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+G RW + ++ KG R + +G W PSR +TV +AGQ GYH RTE NK+I
Sbjct: 208 QGPVKRWGIRIQYGKAARSSKG-RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQIL 266
Query: 426 RMG 428
++G
Sbjct: 267 KIG 269
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 452 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDL 511
++ KG R + +G W PSR +TV +AGQ GYH RTE Y ++K +++ D
Sbjct: 225 RSSKG-RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTE-------YNKQILKIGDASEAD- 275
Query: 512 TEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNG 571
+ P GGF YG V ND++M+KG GP KR++ LRK +Q++A Q+N
Sbjct: 276 ---QVNPSGGFVRYGLVRNDYVMVKGSVPGPTKRLVVLRKAIRAAGKQEEAP----QINY 328
Query: 572 GSVADK 577
S A K
Sbjct: 329 ISTASK 334
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +L +KK + E L G + +K +A L + + ++F++ +D I
Sbjct: 140 RVIVHTNPRLASVPKKKPEVFECGLGGKTPEEKFEYALGILGKDVRASEIFSEGAFVDAI 199
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ V
Sbjct: 200 AVTKGKGFQGPV 211
>gi|448350181|ref|ZP_21539000.1| 50S ribosomal protein L3P [Natrialba taiwanensis DSM 12281]
gi|445637688|gb|ELY90836.1| 50S ribosomal protein L3P [Natrialba taiwanensis DSM 12281]
Length = 340
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 116/282 (41%), Gaps = 62/282 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P+KR+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRKRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPLTEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D A +LR + +V +RVI HT
Sbjct: 115 ----------DLPGDDYDTDASADELRGFLEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ G SV D++ + + LE
Sbjct: 149 -------------------VPGDIPSMPKKKPDVMETRVGGSSVEDRVDYTLELLEDGGG 189
Query: 280 ---VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKGV 371
+KK +ME ++ G SV D++ + + LE + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGSSVEDRVDYTLELLEDGGGEHVMNDVFRAGEYVDASGVTKGKGTQGP 217
Query: 372 TSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 218 VKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGD 277
Query: 430 GIH-TKDG 436
G T DG
Sbjct: 278 GADATVDG 285
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV +T+ G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVDYTLELLEDGGGEH---VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD---- 284
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++IKG GP+KR++ R
Sbjct: 285 -------GGFINYGEVDGPHVLIKGSLPGPEKRLVRFR 315
>gi|409096184|ref|ZP_11216208.1| 50S ribosomal protein L3P [Thermococcus zilligii AN1]
Length = 346
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 52/260 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ + P+KR+ K++ +P+D V + F GYKAGMTHI+ D PG
Sbjct: 7 PRRGSLAYSPRKRARSIVPKIRNWPEDSE---VRMLGFAGYKAGMTHILMIDDNPGLT-K 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KEI VTI+E PP+ + G+ Y + GL + VW L+ RRR K+ K
Sbjct: 63 GKEIFAPVTIVEVPPLFVYGIRAYRQGYLGLETATEVWFHKLNDHVRRRI-----KTLPK 117
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+++ + +Q +LG+ +DL + V R++ HTQ L
Sbjct: 118 DYSEEA--FQARLGQ---LEDLVNEGEVVDV-RLLVHTQPWLIGL--------------- 156
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+KK +ME + G +A K +A++ + + I +V
Sbjct: 157 ----------------------KKKPEVMEYAIGGNDIAAKFEYAKERIGREIRASEVLH 194
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
+ E++D + VTKGKG +G +
Sbjct: 195 EGELLDVVAVTKGKGTQGPV 214
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 302 KGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQD 354
+GE++ ++LL Q KK +ME + G +A K +A++ + + I +V +
Sbjct: 137 EGEVVDVRLLVHTQPWLIGLKKKPEVMEYAIGGNDIAAKFEYAKERIGREIRASEVLHEG 196
Query: 355 EMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVQFTVARAGQK 412
E++D + VTKGKG +G RW K K + R V +G WHP+RV +TV +AGQ
Sbjct: 197 ELLDVVAVTKGKGTQGPVKRWGVKIQFHKAQRAGKGRHVGNLGPWHPARVMWTVPQAGQT 256
Query: 413 GYHHRTELNKKIYRMG 428
G+HHRTELNK++ +G
Sbjct: 257 GFHHRTELNKRLIAIG 272
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V +G WHP+RV +TV +AGQ G+HHRTEL K+ ++ I N + D E IT
Sbjct: 233 RHVGNLGPWHPARVMWTVPQAGQTGFHHRTEL---NKRLIA--IGENGKLNLDGNEIEIT 287
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG V +DFLMI+G G KR+I +R
Sbjct: 288 PKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVR 320
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
+KK +ME + G +A K +A++ + + I +V + E++D + VTKGKG
Sbjct: 157 KKKPEVMEYAIGGNDIAAKFEYAKERIGREIRASEVLHEGELLDVVAVTKGKG 209
>gi|70606412|ref|YP_255282.1| 50S ribosomal protein L3P [Sulfolobus acidocaldarius DSM 639]
gi|449066624|ref|YP_007433706.1| 50S ribosomal protein L3P [Sulfolobus acidocaldarius N8]
gi|449068898|ref|YP_007435979.1| 50S ribosomal protein L3P [Sulfolobus acidocaldarius Ron12/I]
gi|76363364|sp|Q4JB40.1|RL3_SULAC RecName: Full=50S ribosomal protein L3P
gi|68567060|gb|AAY79989.1| 50S ribosomal protein L3P [Sulfolobus acidocaldarius DSM 639]
gi|449035132|gb|AGE70558.1| 50S ribosomal protein L3P [Sulfolobus acidocaldarius N8]
gi|449037406|gb|AGE72831.1| 50S ribosomal protein L3P [Sulfolobus acidocaldarius Ron12/I]
Length = 342
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 49/265 (18%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK S+PR GS G P+KR+ K +P + +P L FIGYKAGMTH+ D+
Sbjct: 3 HRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDK 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGY-VETPHGLRSFKTVWAEHLSQECRRRFYKN 158
P S KE+ VTI+E+PP++ + + Y +++ L WA +
Sbjct: 62 PTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANFEEGSLK------ 115
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+ K + + S K ++KL I ++L + +R++ TQ
Sbjct: 116 YLKRKITSLKVDSSKMKEKL--DLIQKNLNNIT----YMRLLVSTQPW------------ 157
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+ ++ K +P+ ++EIQ+ GGS+ D++ + L + I
Sbjct: 158 ----LVPSLGKKRPE-------------------IVEIQIGGGSIQDQLNYGLSLLGKQI 194
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF + ++ D IGVTKGKGF+G
Sbjct: 195 PVRDVFREGQLTDIIGVTKGKGFQG 219
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K+ ++EIQ+ GGS+ D++ + L + IPV VF + ++ D IGVTKGKGF+GV R
Sbjct: 164 KKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKR 223
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPS-RVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
+ + PR K KG RK IGA PS V + GQ G+H RTE NK+I ++G +
Sbjct: 224 YSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRRTEYNKRIIKIGDNV 280
Query: 432 H 432
+
Sbjct: 281 N 281
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K+ ++EIQ+ GGS+ D++ + L + IPV VF + ++ D IGVTKGKGF+ +
Sbjct: 164 KKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVI 221
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPS-RVQFTVARAGQKGYHHR 486
G+ G V R+ + PR K KG RK IGA PS V + GQ G+H R
Sbjct: 210 GVTKGKGFQGVIKRYSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRR 266
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE Y +IK + + I P GG +YG V N +L+I+G +G +KR
Sbjct: 267 TE-------YNKRIIKIGDNVN------EINPAGGIVNYGLVKNTYLVIEGSVLGSRKRP 313
Query: 547 ITLR 550
+ LR
Sbjct: 314 LFLR 317
>gi|320101368|ref|YP_004176960.1| 50S ribosomal protein L3P [Desulfurococcus mucosus DSM 2162]
gi|319753720|gb|ADV65478.1| LSU ribosomal protein L3P [Desulfurococcus mucosus DSM 2162]
Length = 396
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 130/306 (42%), Gaps = 78/306 (25%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDD------------------PTKPVHL 80
HRK APRHGS+G P+KR+ +V+ +P+ KPV L
Sbjct: 2 GHRKLHAPRHGSLGVRPRKRAEELTPRVRRWPEKSWFDIVVERLGSEAASRGIAAKPV-L 60
Query: 81 TAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHG----- 135
F YKAGMTH V DRP + ++ KE+ VTIL+ PP+V++GV YV G
Sbjct: 61 LGFPVYKAGMTHAVVVEDRPNTPVSGKEVFTPVTILDAPPIVVLGVRTYVVGEDGYLKAK 120
Query: 136 -----------LRSFKTVWAEH--LSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKT 182
L++++ ++A + + R K Y R+ + G K
Sbjct: 121 GEAWRSPVDAVLKAYEELYAGNPLFNMNGRDVVRKYLYGLRRLNHGLVKPDPSGEYGFKF 180
Query: 183 IAQDLRKMAK-----YCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHES 237
IA+ K K +RVIA T P+ S + K +P+
Sbjct: 181 IAESGEKEVKEVFSGEVADVRVIAST-----------------IPVFSGIGKKKPE---- 219
Query: 238 HVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 297
++E+++ GGS+ +++ + L + VF + + ID IGVTK
Sbjct: 220 ---------------IVELKIGGGSIDERLRYGESILGGYVKAADVFMEGQFIDVIGVTK 264
Query: 298 GKGFKG 303
GKGF+G
Sbjct: 265 GKGFQG 270
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 6/117 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++E+++ GGS+ +++ + L + VF + + ID IGVTKGKGF+GV R
Sbjct: 215 KKKPEIVELKIGGGSIDERLRYGESILGGYVKAADVFMEGQFIDVIGVTKGKGFQGVVKR 274
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMG 428
+ K+LPR K KG RK IGA P + +AGQ G+H RTE NK+I R+G
Sbjct: 275 FGVKELPRWHKHRKGSRK---IGARSPGFGTMSEPPQAGQMGFHRRTEYNKRILRIG 328
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K+LPR K KG RK IGA P + +AGQ G+H R
Sbjct: 261 GVTKGKGFQGVVKRFGVKELPRWHKHRKGSRK---IGARSPGFGTMSEPPQAGQMGFHRR 317
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L + L T GGF HYG V +LM+KG GP KR+
Sbjct: 318 TE---YNKRILRI----------GLNGLEATVEGGFLHYGLVYGPYLMLKGTVFGPAKRM 364
Query: 547 ITLR 550
+ LR
Sbjct: 365 LILR 368
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++E+++ GGS+ +++ + L + VF + + ID IGVTKGKGF+ V
Sbjct: 215 KKKPEIVELKIGGGSIDERLRYGESILGGYVKAADVFMEGQFIDVIGVTKGKGFQGVV 272
>gi|150401236|ref|YP_001325002.1| 50S ribosomal protein L3P [Methanococcus aeolicus Nankai-3]
gi|166233154|sp|A6UV68.1|RL3_META3 RecName: Full=50S ribosomal protein L3P
gi|150013939|gb|ABR56390.1| ribosomal protein L3 [Methanococcus aeolicus Nankai-3]
Length = 333
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 58/260 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ R K++ +P+ + K L AF YKAG TH + + + P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPKIRSWPERETVK---LLAFPVYKAGTTHALYKENNPKSPNA 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+++ VT++E P + I G+ Y + GL++ VWA+ +E R+ N K
Sbjct: 65 DQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRKI--NLPKE--- 119
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
KA+ + D++ K + +R I HT + +L
Sbjct: 120 --PKANTEKLDEVADKIVE------------VRAIVHTNPKDTNLP-------------- 151
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+KK ++EI++ G +++D IA+A+ + + + + VF
Sbjct: 152 ----------------------KKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFT 189
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E ID + +TKGKGF+G +
Sbjct: 190 GGEFIDTVAITKGKGFQGPV 209
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G +++D IA+A+ + + + + VF E ID + +TKGKGF+G R
Sbjct: 152 KKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKR 211
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + +KG+ R IG W P R+ +TV AGQ G+H RTE NK+I ++G
Sbjct: 212 WGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIG 267
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 15/111 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + +KG+ R IG W P R+ +TV AGQ G+H RTE K+ L
Sbjct: 211 RWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTE---YNKRILK-- 265
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
I N S I P GGF +YG V N+++++KG GP KR++ LR+
Sbjct: 266 IGENGS--------EIVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLRE 308
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV-- 616
+KK ++EI++ G +++D IA+A+ + + + + VF E ID + +TKGKGF+ V
Sbjct: 152 KKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKR 211
Query: 617 ---------HSNASCAKYFKSLG 630
H N ++ S+G
Sbjct: 212 WGIKIQFGKHQNKGVGRHTGSIG 234
>gi|448618114|ref|ZP_21666459.1| 50S ribosomal protein L3P [Haloferax mediterranei ATCC 33500]
gi|445747669|gb|ELZ99124.1| 50S ribosomal protein L3P [Haloferax mediterranei ATCC 33500]
Length = 338
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 121/280 (43%), Gaps = 60/280 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ + ++K +P DD + L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSMGFSPRKRAVKEVPRIKSWPDDDGSP--ALQGFAGYKAGMTHVMMVNDEADSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF---YKNWY 160
E VT++ETPPM V + Y +TP+G++ VWA E R ++ +
Sbjct: 63 REGMEESVPVTVVETPPMRAVALRAYEQTPYGMKPKTEVWASEFHDELDRVLDLPAEDTF 122
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
+S A +A + A +RVI HT
Sbjct: 123 ESDADALREAVE------------------AGEVDDLRVITHT----------------- 147
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PI 278
V +L +KK +ME ++ GGS+ ++ +A +E+
Sbjct: 148 ------------------VPAELKNVPKKKPDVMETRVGGGSMVERADFALDLVEEGGEH 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ ++ +A +E+ + VF E +D GVT
Sbjct: 148 VPAELKNVPKKKPDVMETRVGGGSMVERADFALDLVEEGGEHEMSDVFRAGEYLDAAGVT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ +G G
Sbjct: 268 KRLIDLGEG 276
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + + G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RADFALDLVEEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + ++AS +
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDDASVE--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + +IKG GP KR++ R
Sbjct: 283 --GGFVNYGEVDGSYALIKGSLPGPNKRLLRFR 313
>gi|227827691|ref|YP_002829471.1| 50S ribosomal protein L3P [Sulfolobus islandicus M.14.25]
gi|238619862|ref|YP_002914688.1| 50S ribosomal protein L3P [Sulfolobus islandicus M.16.4]
gi|385773363|ref|YP_005645929.1| 50S ribosomal protein L3 [Sulfolobus islandicus HVE10/4]
gi|385776001|ref|YP_005648569.1| 50S ribosomal protein L3 [Sulfolobus islandicus REY15A]
gi|259709737|sp|C4KHF6.1|RL3_SULIK RecName: Full=50S ribosomal protein L3P
gi|259709739|sp|C3MVH8.1|RL3_SULIM RecName: Full=50S ribosomal protein L3P
gi|227459487|gb|ACP38173.1| ribosomal protein L3 [Sulfolobus islandicus M.14.25]
gi|238380932|gb|ACR42020.1| ribosomal protein L3 [Sulfolobus islandicus M.16.4]
gi|323474749|gb|ADX85355.1| ribosomal protein L3 [Sulfolobus islandicus REY15A]
gi|323477477|gb|ADX82715.1| ribosomal protein L3 [Sulfolobus islandicus HVE10/4]
Length = 351
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 127/271 (46%), Gaps = 52/271 (19%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK ++PR GS G P+KRS+ + +P+ + P L F+GYK GM+H+ D
Sbjct: 3 HRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDW 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKT-VWAEHLSQ--ECRRRF- 155
P S N KEI VT+LE PP++ + + Y G + T W+ Q + RR
Sbjct: 62 PNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIH 121
Query: 156 -YKNWYKSRQKAFTKASKKWQDKLGKK--TIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
+ ++ K+ + + KK+++K G K I +L ++ + R++ TQ ++
Sbjct: 122 SFSSFLKNDE-----SKKKFEEKFGSKLDLIKSNLDRIVYF----RLLVATQPRK----- 167
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
++ K PD L+EIQ+ GG ++ +A
Sbjct: 168 -----------IPSLGKKVPD-------------------LVEIQIGGGEKKAQLDYALN 197
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
L + I + VF + ++ID +GVTKGKGF G
Sbjct: 198 VLGKEISIKDVFKEGQLIDVVGVTKGKGFAG 228
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF GV R
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKR 232
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSR-VQFTVARAGQKGYHHRTELNKKIYRMG 428
+ +LPR K KG RK+ G PS + GQ G+H RTE NK+I ++G
Sbjct: 233 YSVVELPRWHKHRKGSRKIGTRG---PSLGTPSYTPQPGQLGFHRRTEYNKRIIKIG 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 33/179 (18%)
Query: 389 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELN--------KKIYRMG-----AGIHTKD 435
RK+ +G P V+ + G+K LN K +++ G G+
Sbjct: 166 RKIPSLGKKVPDLVEIQIG-GGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
Query: 436 GKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSR-VQFTVARAGQKGYHHRTELFLC 492
G V R+ +LPR K KG RK+ G PS + GQ G+H RTE
Sbjct: 225 GFAGVIKRYSVVELPRWHKHRKGSRKIGTRG---PSLGTPSYTPQPGQLGFHRRTE---- 277
Query: 493 KKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y +IK K I P GGF YG V N +++++G +G KKR I LR+
Sbjct: 278 ---YNKRIIKIGDDP------KEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLRE 327
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 609
RK+ L K K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKG
Sbjct: 166 RKIPSLGK--KVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKG 223
Query: 610 KGFKECV 616
KGF +
Sbjct: 224 KGFAGVI 230
>gi|448311980|ref|ZP_21501733.1| 50S ribosomal protein L3P [Natronolimnobius innermongolicus JCM
12255]
gi|445603601|gb|ELY57563.1| 50S ribosomal protein L3P [Natronolimnobius innermongolicus JCM
12255]
Length = 339
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 57/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
++PR GS+GF P+KR+ + +P DD +P L F GYKAGMTH+V D+ S
Sbjct: 5 NSPRKGSLGFGPRKRATSEVPRFNSWP-DDEGQPT-LQGFAGYKAGMTHVVMVDDKSNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 63 TEGMEQTVPVTIVETPPMRAVSLRAYEDTPYGKQPITEVWTDEFVPELDRTL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
D + ++LR + ++ +RVI HT
Sbjct: 115 --------DLPGDDYDAEAAEEELRNLLAEGRIDDVRVITHT------------------ 148
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
V + +KK +ME ++ GGSV +++ +A + LE
Sbjct: 149 -----------------VPGSVPSVPKKKPDVMETRVGGGSVGERVDFALELLEDGGEHV 191
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 192 MNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV +++ +A + LE + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVGERVDFALELLEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ MG G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDMGDG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFALELLEDGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + M +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDMGDGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R+I R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPEQRLIRFR 314
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK +ME ++ GGSV +++ +A + LE + VF E +D GVTKGKG + V
Sbjct: 158 KKKPDVMETRVGGGSVGERVDFALELLEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
>gi|67594773|ref|XP_665876.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656732|gb|EAL35645.1| hypothetical protein Chro.50226 [Cryptosporidium hominis]
Length = 74
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PR GS+GF P+KR +R RGKVK FPKDD +P HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFERPRSGSLGFLPRKRCSRSRGKVKAFPKDDSNQPPHLTAFMGYKAGMTHIVRDVD 61
Query: 99 RPGS 102
+PGS
Sbjct: 62 KPGS 65
>gi|240104060|ref|YP_002960369.1| 50S ribosomal protein L3P [Thermococcus gammatolerans EJ3]
gi|259709743|sp|C5A286.1|RL3_THEGJ RecName: Full=50S ribosomal protein L3P
gi|239911614|gb|ACS34505.1| LSU ribosomal protein L3P (rpl3P) [Thermococcus gammatolerans EJ3]
Length = 346
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 117/258 (45%), Gaps = 52/258 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ ++K +PKD V + F GYKAGMTHI+ D PG
Sbjct: 7 PRRGSLAFSPRKRARSVVPRIKKWPKDSE---VRMLGFAGYKAGMTHILMIDDSPGLT-K 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KEI VTI+E PP+ + G+ Y + GL + VW L+ +RR K+ K
Sbjct: 63 GKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRI-----KTLPK 117
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+ + ++ KLG+ +DL + V R++ HTQ
Sbjct: 118 NY--GEEDFKAKLGQ---LEDLVNDGEIVDV-RLLVHTQ--------------------- 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
L K +KK +ME + G V K +A++ + + I +V
Sbjct: 151 ----------------PWLIKLKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLH 194
Query: 286 QDEMIDCIGVTKGKGFKG 303
+ E++D I VTKGKG +G
Sbjct: 195 EGELLDVIAVTKGKGTQG 212
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Query: 303 GEMIAMKLLK-------KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 355
GE++ ++LL K +KK +ME + G V K +A++ + + I +V + E
Sbjct: 138 GEIVDVRLLVHTQPWLIKLKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGE 197
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVQFTVARAGQKG 413
++D I VTKGKG +G RW K K + R + +G WHP+RV +TV +AGQ G
Sbjct: 198 LLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMG 257
Query: 414 YHHRTELNKKIYRMG 428
+HHRTE NK++ +G
Sbjct: 258 FHHRTEFNKRLIAIG 272
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R + +G WHP+RV +TV +AGQ G+HHRTE K+ ++ I N + E IT
Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEF---NKRLIA--IGENGKLVLNGNEIDIT 287
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG + +DFLMI+G G KR+I +R
Sbjct: 288 PKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVR 320
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L K +KK +ME + G V K +A++ + + I +V + E++D I VTKGKG
Sbjct: 153 LIKLKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKG 209
>gi|448369939|ref|ZP_21556392.1| 50S ribosomal protein L3P [Natrialba aegyptia DSM 13077]
gi|445650379|gb|ELZ03303.1| 50S ribosomal protein L3P [Natrialba aegyptia DSM 13077]
Length = 340
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 118/282 (41%), Gaps = 62/282 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P+KR+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRKRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPLTEVWTDEFVPELDRVLDLPGDD 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
A A +LR + +V +RVI HT
Sbjct: 121 YDTDA----------------AADELRGFLEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ GGSV D++ +A + LE
Sbjct: 149 -------------------VPGDIPSMPKKKPDVMETRVGGGSVEDRVDYALELLEDGGG 189
Query: 280 ---VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKGV 371
+KK +ME ++ GGSV D++ +A + LE + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVEDRVDYALELLEDGGGEHVMNDVFRAGEYVDASGVTKGKGTQGP 217
Query: 372 TSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 218 VKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGD 277
Query: 430 GIH-TKDG 436
G T DG
Sbjct: 278 GADATVDG 285
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 24/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV + + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVDYALELLEDGGGEH---VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD---- 284
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++IKG GP+KR++ R
Sbjct: 285 -------GGFINYGEVDGPHVLIKGSLPGPEKRLVRFR 315
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKEC 615
+KK +ME ++ GGSV D++ +A + LE + VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEDRVDYALELLEDGGGEHVMNDVFRAGEYVDASGVTKGKGTQGP 217
Query: 616 V 616
V
Sbjct: 218 V 218
>gi|448704116|ref|ZP_21700597.1| 50S ribosomal protein L3P [Halobiforma nitratireducens JCM 10879]
gi|445796505|gb|EMA47009.1| 50S ribosomal protein L3P [Halobiforma nitratireducens JCM 10879]
Length = 339
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P+KR++ + +P D PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRKRASSEVPRFNSWPDTDGQPT----LQGFAGYKAGMTHVVMVDDKSN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G+ VW + + E R
Sbjct: 61 SPTEGMEQTVPVTIVETPPMRAVALRAYEDTPYGMNPVTEVWTDEFADELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D +LR + + +V +R I HT
Sbjct: 115 ----------DLPGDDYDSDAAEDELRGLLEEGRVDDVRAITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V ++ +KK +ME ++ GGSV +++ + LE
Sbjct: 149 -------------------VPSEVPSVPKKKPDVMETRVGGGSVEERVDFGLDLLENGGE 189
Query: 280 --VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 HVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV +++ + LE + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVEERVDFGLDLLENGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGNG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFGLDLLENGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGNGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP+KR++ R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPEKRLVRFR 314
>gi|212223211|ref|YP_002306447.1| 50S ribosomal protein L3P [Thermococcus onnurineus NA1]
gi|226730581|sp|B6YSL3.1|RL3_THEON RecName: Full=50S ribosomal protein L3P
gi|212008168|gb|ACJ15550.1| LSU ribosomal protein L3P [Thermococcus onnurineus NA1]
Length = 347
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 121/264 (45%), Gaps = 52/264 (19%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GS+ + P+KR+ +++ +PKD V + F GYKAGMTHI+ DRPG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKDSE---VRMLGFAGYKAGMTHILMIDDRPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
KEI VT++E PP+ + G+ Y + GL + VW L+ +RR K
Sbjct: 60 L-TKGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI-----K 113
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ K + + + +Q KLG+ +DL + V R++ HTQ
Sbjct: 114 TLPKDYNEEA--FQAKLGQ---LEDLVNDGEIVDV-RLLVHTQ----------------- 150
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
L K +KK +ME + G V K +A++ + + +
Sbjct: 151 --------------------PWLIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAS 190
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
+V + E++D I VTKGKG +G +
Sbjct: 191 EVLHEGELLDVIAVTKGKGTQGPV 214
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Query: 303 GEMIAMKLLK-------KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 355
GE++ ++LL K +KK +ME + G V K +A++ + + + +V + E
Sbjct: 138 GEIVDVRLLVHTQPWLIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGE 197
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVQFTVARAGQKG 413
++D I VTKGKG +G RW K K + R V +G WHP+RV +TV +AGQ G
Sbjct: 198 LLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMG 257
Query: 414 YHHRTELNKKIYRMG 428
+HHRTE NK++ +G
Sbjct: 258 FHHRTEFNKRLIAIG 272
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V +G WHP+RV +TV +AGQ G+HHRTE K L + +N + E IT
Sbjct: 233 RHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEF----NKRLIAIGENGKLKLDEKNEIEIT 288
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG + +DFLMI+G G KR+I +R
Sbjct: 289 PKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVR 321
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L K +KK +ME + G V K +A++ + + + +V + E++D I VTKGKG
Sbjct: 153 LIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKG 209
>gi|227830387|ref|YP_002832167.1| 50S ribosomal protein L3P [Sulfolobus islandicus L.S.2.15]
gi|229579206|ref|YP_002837604.1| 50S ribosomal protein L3P [Sulfolobus islandicus Y.G.57.14]
gi|229582042|ref|YP_002840441.1| 50S ribosomal protein L3P [Sulfolobus islandicus Y.N.15.51]
gi|284997894|ref|YP_003419661.1| 50S ribosomal protein L3 [Sulfolobus islandicus L.D.8.5]
gi|259709738|sp|C3MQ59.1|RL3_SULIL RecName: Full=50S ribosomal protein L3P
gi|259709740|sp|C3NHA9.1|RL3_SULIN RecName: Full=50S ribosomal protein L3P
gi|259709741|sp|C3NEE3.1|RL3_SULIY RecName: Full=50S ribosomal protein L3P
gi|227456835|gb|ACP35522.1| ribosomal protein L3 [Sulfolobus islandicus L.S.2.15]
gi|228009920|gb|ACP45682.1| ribosomal protein L3 [Sulfolobus islandicus Y.G.57.14]
gi|228012758|gb|ACP48519.1| ribosomal protein L3 [Sulfolobus islandicus Y.N.15.51]
gi|284445789|gb|ADB87291.1| ribosomal protein L3 [Sulfolobus islandicus L.D.8.5]
Length = 351
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 125/275 (45%), Gaps = 60/275 (21%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK ++PR GS G P+KRS+ + +P+ + P L F+GYK GM+H+ D
Sbjct: 3 HRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDW 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKT-VWAEHLSQ--ECRRR-- 154
P S N KEI VT+LE PP++ + + Y G + T W+ Q + RR
Sbjct: 62 PNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIH 121
Query: 155 ----FYKNWYKSRQKAFTKASKKWQDKLGKK--TIAQDLRKMAKYCKVIRVIAHTQNQQQ 208
F KN ++ KK+++K G K I +L ++ + R++ TQ ++
Sbjct: 122 SLSSFLKN---------DESKKKFEEKFGSKLDLIKSNLDRIVYF----RLLVATQPRK- 167
Query: 209 SLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIA 268
++ K PD L+EIQ+ GG ++
Sbjct: 168 ---------------IPSLGKKVPD-------------------LVEIQIGGGEKKAQLD 193
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+A L + I + VF + ++ID +GVTKGKGF G
Sbjct: 194 YALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAG 228
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF GV R
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKR 232
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSR-VQFTVARAGQKGYHHRTELNKKIYRMG 428
+ +LPR K KG RK+ G PS + GQ G+H RTE NK+I ++G
Sbjct: 233 YSVVELPRWHKHRKGSRKIGTRG---PSLGTPSYTPQPGQLGFHRRTEYNKRIIKIG 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 33/179 (18%)
Query: 389 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELN--------KKIYRMG-----AGIHTKD 435
RK+ +G P V+ + G+K LN K +++ G G+
Sbjct: 166 RKIPSLGKKVPDLVEIQIG-GGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
Query: 436 GKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSR-VQFTVARAGQKGYHHRTELFLC 492
G V R+ +LPR K KG RK+ G PS + GQ G+H RTE
Sbjct: 225 GFAGVIKRYSVVELPRWHKHRKGSRKIGTRG---PSLGTPSYTPQPGQLGFHRRTE---- 277
Query: 493 KKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y +IK K I P GGF YG V N +++++G +G KKR I LR+
Sbjct: 278 ---YNKRIIKIGDDP------KEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLRE 327
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 609
RK+ L K K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKG
Sbjct: 166 RKIPSLGK--KVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKG 223
Query: 610 KGFKECV 616
KGF +
Sbjct: 224 KGFAGVI 230
>gi|14278035|pdb|1GIY|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
gi|28373724|pdb|1ML5|EE Chain e, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
gi|66361021|pdb|1YL3|E Chain E, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
gi|88192261|pdb|2B66|E Chain E, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
gi|88192324|pdb|2B9N|E Chain E, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
gi|88192379|pdb|2B9P|E Chain E, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400
Length = 338
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 115/277 (41%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 4 SRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 61
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 62 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-------- 113
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
A +D++ A DL + R+I H
Sbjct: 114 SDRLDHALDIVEDQIRDAHEAGDLGDL-------RLITH--------------------- 145
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
T PD+ S +KK +ME ++ GGSV+D++ A +E +
Sbjct: 146 ------TVPDAVPS--------VPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMN 191
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 192 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 228
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 156 KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 215
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 216 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 275
Query: 431 IH-TKDG 436
T DG
Sbjct: 276 DEPTVDG 282
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 21/147 (14%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 191 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 250
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 251 VPQQGQTGYHQRTEL---NKRLIDIGEGDEPTVD-----------GGFVNYGEVDGPYTL 296
Query: 535 IKGCCMGPKKRVITLRKMKLLKKRQKK 561
+KG GP KR++ + + Q +
Sbjct: 297 VKGSVPGPDKRLVPFFRPAVRPNDQPR 323
>gi|284162460|ref|YP_003401083.1| 50S ribosomal protein L3 [Archaeoglobus profundus DSM 5631]
gi|284012457|gb|ADB58410.1| ribosomal protein L3 [Archaeoglobus profundus DSM 5631]
Length = 332
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 117/266 (43%), Gaps = 61/266 (22%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K+S PR GS+ F P+KR+ +++ +P D +P L F GYKAGMTH++ DR
Sbjct: 2 KYSRPRRGSLAFSPRKRAKDVIPRIRSWP-DYEGEP-KLLGFAGYKAGMTHVIMIDDRKN 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S +EIV VT+LE PPM + G+ Y T +GL+ K VW L + RR
Sbjct: 60 SPTYGEEIVVPVTVLECPPMKVAGIRVYKNTMYGLQIAKEVWTTELDEHLSRRL------ 113
Query: 162 SRQKAFTKASKKWQDKLGKK--TIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
L KK T + L+ + +V R+I +TQ
Sbjct: 114 ---------------PLPKKINTDVESLKNVENIAEV-RLITYTQPY------------- 144
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
+ + V PD +ME ++ G + + +A L + I
Sbjct: 145 ---LITGVPSKTPD-------------------VMEYKVGGSDINAVLDYAISKLGKEIR 182
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEM 305
V +VF + ID I +TKGKGF+G +
Sbjct: 183 VSEVFQEGAFIDVIAITKGKGFQGPV 208
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
K +ME ++ G + + +A L + I V +VF + ID I +TKGKGF+G R
Sbjct: 151 SKTPDVMEYKVGGSDINAVLDYAISKLGKEIRVSEVFQEGAFIDVIAITKGKGFQGPVKR 210
Query: 375 WHTKKLPRKTHKGL--RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W L K + R+V +G W P RV++TV +AGQ G+H RTE NK+I ++G
Sbjct: 211 WGVITLDAKHARSSKHRRVGTLGPWTPHRVRWTVPQAGQMGFHQRTEYNKRIIKIG 266
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R+V +G W P RV++TV +AGQ G+H RTE Y +IK + + IT
Sbjct: 227 RRVGTLGPWTPHRVRWTVPQAGQMGFHQRTE-------YNKRIIKIGENGE------EIT 273
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGF HYG + +D++++ G GP KR+I +R
Sbjct: 274 PEGGFVHYGVIRSDYVLVSGSVPGPVKRLIRMR 306
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 522 FPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAW 580
P ++N D +K + R+IT + L+ K +ME ++ G + + +
Sbjct: 113 LPLPKKINTDVESLKNVENIAEVRLITYTQPYLITGVPSKTPDVMEYKVGGSDINAVLDY 172
Query: 581 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
A L + I V +VF + ID I +TKGKGF+ V
Sbjct: 173 AISKLGKEIRVSEVFQEGAFIDVIAITKGKGFQGPV 208
>gi|15897623|ref|NP_342228.1| 50S ribosomal protein L3P [Sulfolobus solfataricus P2]
gi|284174948|ref|ZP_06388917.1| 50S ribosomal protein L3P [Sulfolobus solfataricus 98/2]
gi|384434237|ref|YP_005643595.1| 50S ribosomal protein L3 [Sulfolobus solfataricus 98/2]
gi|9910845|sp|Q9UXA8.1|RL3_SULSO RecName: Full=50S ribosomal protein L3P
gi|6015757|emb|CAB57584.1| ribosomal protein L3 (HMAL3) [Sulfolobus solfataricus P2]
gi|13813888|gb|AAK41018.1| LSU ribosomal protein L3AB (rpl3AB) [Sulfolobus solfataricus P2]
gi|261602391|gb|ACX91994.1| ribosomal protein L3 [Sulfolobus solfataricus 98/2]
Length = 351
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 40/265 (15%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK ++PR GS G P+KRS+ + +P+ + P L F+GYK GMTH+ D
Sbjct: 3 HRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDW 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
P S N KEI VT+LE PP++ P LR++ + + +
Sbjct: 62 PNSPTNGKEIYMPVTVLEVPPII----------PLALRAYA------IDGKGEPNVITEY 105
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
+ S F +++ + ++ + K + + +++ +TK
Sbjct: 106 WSSSSLQFLDITRR-------------IHSISSFLK---------DDESKKKFDERFNTK 143
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKA-HLMEIQLNGGSVADKIAWARQHLEQPI 278
I+SN+++ Q + + KKA L+EIQ+ GG ++ +A L + I
Sbjct: 144 LDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEI 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ VF + ++ID +GVTKGKGF G
Sbjct: 204 TIRDVFKEGQLIDVVGVTKGKGFAG 228
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF GV R
Sbjct: 173 KKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKR 232
Query: 375 WHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+ +LPR K KG RK+ G PS + GQ G+H RTE NK+I ++G
Sbjct: 233 YSVVELPRWHKHRKGSRKIGTRGPSLGTPS----YTPQPGQLGFHRRTEYNKRIIKIG 286
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 35/180 (19%)
Query: 389 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELN--------KKIYRMG-----AGIHTKD 435
RK+ +G P V+ + G+K LN + +++ G G+
Sbjct: 166 RKIPSLGKKAPDLVEIQIG-GGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGK 224
Query: 436 GKVSVTSRWHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELFL 491
G V R+ +LPR K KG RK+ G PS + GQ G+H RTE
Sbjct: 225 GFAGVIKRYSVVELPRWHKHRKGSRKIGTRGPSLGTPS----YTPQPGQLGFHRRTE--- 277
Query: 492 CKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y +IK K I P GGF YG V N +++++G +G KKR I LR+
Sbjct: 278 ----YNKRIIKIGDE------PKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 609
RK+ L K K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKG
Sbjct: 166 RKIPSLGK--KAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKG 223
Query: 610 KGFKECV 616
KGF +
Sbjct: 224 KGFAGVI 230
>gi|448630850|ref|ZP_21673305.1| 50S ribosomal protein L3P [Haloarcula vallismortis ATCC 29715]
gi|445755224|gb|EMA06614.1| 50S ribosomal protein L3P [Haloarcula vallismortis ATCC 29715]
Length = 338
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 5 SRPRKGSMGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 63 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T + D + +D + +RVI HT
Sbjct: 113 ----TLDVPEDHDPDAAEEQIRDAHEAGDLGD-LRVITHT-------------------- 147
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 148 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDLVEDGGEHAMN 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSVSDRLDHALDLVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 192 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 251
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 252 VPQQGQTGYHQRTEL---NKRLIDIGEGDEPTVD-----------GGFVNYGEVDGSYTL 297
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 298 VKGSVPGPDKRLVRFR 313
>gi|315425680|dbj|BAJ47337.1| large subunit ribosomal protein L3 [Candidatus Caldiarchaeum
subterraneum]
gi|315427562|dbj|BAJ49161.1| large subunit ribosomal protein L3 [Candidatus Caldiarchaeum
subterraneum]
gi|343484512|dbj|BAJ50166.1| large subunit ribosomal protein L3 [Candidatus Caldiarchaeum
subterraneum]
Length = 320
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K + EI++ GG A+ + A+Q + + + V VF + + +D I VTKGKGF+GV R+
Sbjct: 150 KAPRIAEIKI-GGKPAEALEKAKQLVGKDLRVTDVFKEGQFVDVIAVTKGKGFQGVVKRY 208
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG---AGIH 432
L RK+ K R VA IG W+P V +TV R+GQ GYH RTE NK+I R+G A I+
Sbjct: 209 GVSILQRKSRKTRRGVAAIGPWNPHYVMYTVPRSGQMGYHRRTEFNKRILRIGDDPASIN 268
Query: 433 TKDGKVSVTSRWH 445
K G WH
Sbjct: 269 PKSG-------WH 274
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 65/279 (23%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK+S PRHGS+ + P+ R+A +VK +P + + FIGYK GMT + + P
Sbjct: 4 RKYSRPRHGSLAYLPRGRAASILPRVKHWPDGE-----GVLGFIGYKVGMTMVHYIDNTP 58
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWY 160
S E+ +A T++ PP+ ++G+ Y L + W++ + ++ +R
Sbjct: 59 NSPTQGSEVAKACTVVAAPPLKVIGISLYRNVDGELVNIGKYWSKEVPEDVKR------- 111
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
R F A+++ ++ +R++ TQ +
Sbjct: 112 --RNPTFRPMPS-----------AEEIGQLEDDVDEVRIVVATQPR-------------- 144
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
L K + EI++ GG A+ + A+Q + + + V
Sbjct: 145 -----------------------LVGAGKAPRIAEIKI-GGKPAEALEKAKQLVGKDLRV 180
Query: 281 GQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKK 317
VF + + +D I VTKGKGF+G + + +L+++ +K
Sbjct: 181 TDVFKEGQFVDVIAVTKGKGFQGVVKRYGVSILQRKSRK 219
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V R+ L RK+ K R VA IG W+P V +TV R+GQ GYH RTE K+ L
Sbjct: 204 VVKRYGVSILQRKSRKTRRGVAAIGPWNPHYVMYTVPRSGQMGYHRRTEF---NKRILR- 259
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I ++ + SI P G+ +G V +D+L+++G G R + LR
Sbjct: 260 -IGDDPA--------SINPKSGWHRFGLVKSDYLVLEGSVAGTPLRPLVLR 301
>gi|390938993|ref|YP_006402731.1| 50S ribosomal protein L3 [Desulfurococcus fermentans DSM 16532]
gi|390192100|gb|AFL67156.1| ribosomal protein L3 [Desulfurococcus fermentans DSM 16532]
Length = 396
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 50/292 (17%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPK------------DDPT------KPVHL 80
HRK APRHGS+G P+KR+ +VK +P+ ++ T +PV L
Sbjct: 2 GHRKLHAPRHGSLGVRPRKRAEELTPRVKRWPEKSWFDILVERLGNEATSQGVVARPV-L 60
Query: 81 TAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFK 140
F YKAGMTH + DRP + + KE+ VTIL+ PP+V++GV Y+
Sbjct: 61 LGFPVYKAGMTHAIIVEDRPNTPVTGKEVFTPVTILDAPPIVVLGVRTYI---------- 110
Query: 141 TVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIA-QDLRKMAKYCKVIRV 199
+ +E + ++S A KA ++ + I+ +D+ + KY +R
Sbjct: 111 ------IDEEGYLKTKGEAWRSPHDAVAKAFEELYAGIPLMGISVKDVVR--KYLHGLRK 162
Query: 200 IAH--------TQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKA 251
+ H ++ + + ++ +S +D + + + + V + K KK
Sbjct: 163 VNHGLVKPEPSSEYGFKFVAESSESELRDA-LSGEIADVRVIASTIPVLSGIGK---KKP 218
Query: 252 HLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
++E+++ GGS+ +++ +A L + VF + + +D IGVTKGKGF+G
Sbjct: 219 EIIELKIGGGSIDERLKYAEGILGGYVKASDVFMEGQFVDVIGVTKGKGFQG 270
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++E+++ GGS+ +++ +A L + VF + + +D IGVTKGKGF+GV R
Sbjct: 215 KKKPEIIELKIGGGSIDERLKYAEGILGGYVKASDVFMEGQFVDVIGVTKGKGFQGVVKR 274
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMG 428
+ K+LPR K KG RK IGA P + +AGQ G+H RTE NK+I +MG
Sbjct: 275 FGVKELPRWHKHRKGSRK---IGARSPGFGTMSEPPQAGQMGFHRRTEYNKRILKMG 328
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K+LPR K KG RK IGA P + +AGQ G+H R
Sbjct: 261 GVTKGKGFQGVVKRFGVKELPRWHKHRKGSRK---IGARSPGFGTMSEPPQAGQMGFHRR 317
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L M + N T + GGF HYG V ++M+KG GP KR+
Sbjct: 318 TE---YNKRILKMGL-NGLETTIE---------GGFLHYGLVYGPYIMLKGTVFGPAKRM 364
Query: 547 ITLR 550
+ LR
Sbjct: 365 LILR 368
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++E+++ GGS+ +++ +A L + VF + + +D IGVTKGKGF+ V
Sbjct: 215 KKKPEIIELKIGGGSIDERLKYAEGILGGYVKASDVFMEGQFVDVIGVTKGKGFQGVV 272
>gi|156937755|ref|YP_001435551.1| 50S ribosomal protein L3P [Ignicoccus hospitalis KIN4/I]
gi|156566739|gb|ABU82144.1| LSU ribosomal protein L3P [Ignicoccus hospitalis KIN4/I]
Length = 358
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 123/273 (45%), Gaps = 53/273 (19%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK APR GS G P+KR+A +V+ +P D KP+ AF+GYK GMTH++ DR
Sbjct: 4 RKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDRE 60
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPH-GLRSFKTVW-------AEHLSQECR 152
+EI VT++ETPPMV++G Y P+ G + VW E L +E
Sbjct: 61 HVDTAGQEIFVPVTVIETPPMVVLGARVYGYDPNRGRYALTEVWRNPSDTIKEKLGEEVL 120
Query: 153 RRFYKNWYKSRQKAFTK--ASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSL 210
R++ K + K ++ K+ +K + D K+ ++ I
Sbjct: 121 RKYLLGMSKRLPHMVEELGPGKGFEFKVPEKELDVDPEKVVGVGLIMSSIPF-------- 172
Query: 211 HQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWA 270
+ V+K PD ++E+++ GGS + + +A
Sbjct: 173 ------------LAGGVSKKAPD-------------------ILEVKV-GGSPVEALEYA 200
Query: 271 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ L Q + V +V + +D IGVTKGKGF+G
Sbjct: 201 KGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQG 233
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K ++E+++ GGS + + +A+ L Q + V +V + +D IGVTKGKGF+GV R
Sbjct: 179 KKAPDILEVKV-GGSPVEALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKR 237
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIH 432
+ K+LP+ K KG R+V +W + V + GQ GYH RT+ NK++ I
Sbjct: 238 FGVKELPKWHKHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLM----IS 291
Query: 433 TKDGKVSVTSRW 444
K++V W
Sbjct: 292 DDPSKINVEGGW 303
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G+ G V R+ K+LP+ K KG R+V +W + V + GQ GYH RT
Sbjct: 224 GVTKGKGFQGVIKRFGVKELPKWHKHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRT 281
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
+ K + M+ + + + + GG+ HYG V + ++++KG GP KR I
Sbjct: 282 DY----NKRVLMISDDPSKINVE---------GGWLHYGLVKSKYVVLKGSVFGPPKRPI 328
Query: 548 TLR 550
+R
Sbjct: 329 IMR 331
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K ++E+++ GGS + + +A+ L Q + V +V + +D IGVTKGKGF+ +
Sbjct: 179 KKAPDILEVKV-GGSPVEALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVI 235
>gi|448302866|ref|ZP_21492816.1| 50S ribosomal protein L3P [Natronorubrum sulfidifaciens JCM 14089]
gi|445593873|gb|ELY48040.1| 50S ribosomal protein L3P [Natronorubrum sulfidifaciens JCM 14089]
Length = 339
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 120/281 (42%), Gaps = 61/281 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P++R+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRQRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G++ VW + + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRVYEDTPYGMKPLTEVWTDEFAPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D +LR + +V +RVI HT
Sbjct: 115 ----------DLPGDDYDVDAATDELRGYLEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V ++ +KK +ME ++ GGS+ +++ +A + +E
Sbjct: 149 -------------------VPGEIPSMPKKKPDVMETRVGGGSLDERVDFALETVEDGGE 189
Query: 280 --VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ +F E +D GVTKGKG +G + + K++ K A
Sbjct: 190 HVMNDMFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 303 GEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCI 360
GE+ +M +KK +ME ++ GGS+ +++ +A + +E + +F E +D
Sbjct: 151 GEIPSMP-----KKKPDVMETRVGGGSLDERVDFALETVEDGGEHVMNDMFRAGEYVDAS 205
Query: 361 GVTKGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRT 418
GVTKGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RT
Sbjct: 206 GVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRT 265
Query: 419 ELNKKIYRMGAGIH-TKDG 436
ELNK++ +G G T DG
Sbjct: 266 ELNKRLVDIGDGADATVDG 284
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
RV F + G H ++ + Y +G+ G RW +K K +G R
Sbjct: 176 RVDFALETVEDGGEHVMNDMFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 235
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 236 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD--------- 283
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP KR++ R
Sbjct: 284 --GGFVNYGEVDGPHALIKGSLPGPNKRLVRFR 314
>gi|57641477|ref|YP_183955.1| 50S ribosomal protein L3P [Thermococcus kodakarensis KOD1]
gi|73917495|sp|Q5JDJ0.1|RL3_PYRKO RecName: Full=50S ribosomal protein L3P
gi|57159801|dbj|BAD85731.1| LSU ribosomal protein L3P [Thermococcus kodakarensis KOD1]
Length = 346
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 52/264 (19%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GS+ + P+KR+ +++ +PKD V + F GYKAGMTHI+ D PG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKDSE---VRMLGFAGYKAGMTHILMIDDSPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
KEI VTI+E PP+ + G+ Y + GL + VW L + RR K
Sbjct: 60 LT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRI-----K 113
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ K + + + +Q KLG+ +DL + V R++ HTQ L
Sbjct: 114 TLPKNYNEEA--FQAKLGQ---LEDLVNDGEIADV-RLLVHTQPWLIGL----------- 156
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+KK +ME + G V K +A++ + + + G
Sbjct: 157 --------------------------KKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAG 190
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
+V + E++D I VTKGKG +G +
Sbjct: 191 EVLHEGELLDVIAVTKGKGTQGPV 214
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 9/135 (6%)
Query: 303 GEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 355
GE+ ++LL Q KK +ME + G V K +A++ + + + G+V + E
Sbjct: 138 GEIADVRLLVHTQPWLIGLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGE 197
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVQFTVARAGQKG 413
++D I VTKGKG +G RW K K + R + +G WHP+RV +TV +AGQ G
Sbjct: 198 LLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMG 257
Query: 414 YHHRTELNKKIYRMG 428
+HHRTE NK++ +G
Sbjct: 258 FHHRTEFNKRLIAIG 272
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R + +G WHP+RV +TV +AGQ G+HHRTE K+ ++ I N D E IT
Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEF---NKRLIA--IGENGKLVLDGNEIEIT 287
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG V +DFLMI+G G KR+I +R
Sbjct: 288 PKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVR 320
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
+KK +ME + G V K +A++ + + + G+V + E++D I VTKGKG
Sbjct: 157 KKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKG 209
>gi|448399310|ref|ZP_21570612.1| 50S ribosomal protein L3P [Haloterrigena limicola JCM 13563]
gi|445669217|gb|ELZ21830.1| 50S ribosomal protein L3P [Haloterrigena limicola JCM 13563]
Length = 339
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 118/279 (42%), Gaps = 61/279 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
PR GS+GF P+KR+ + +P DD PT L F GYKAGMTH+V D+ S
Sbjct: 7 PRKGSLGFGPRKRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKSNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VTI+ETPPM V + Y +TP+G++ VW + E R
Sbjct: 63 TEGMEQTVPVTIVETPPMRAVSLRAYEDTPYGMKPLTEVWTDEFVPELDRVLDLPGDDYD 122
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
A +LR + + +V +RVI HT
Sbjct: 123 ADA----------------ATDELRGLHEEGRVDDVRVITHT------------------ 148
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
V ++ +KK +ME ++ GGSV +++ +A + LE
Sbjct: 149 -----------------VPSEVPSVPKKKPDVMETRVGGGSVDERVDFALELLEDGGEHV 191
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 192 MNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV +++ +A + LE + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVDERVDFALELLEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGDG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFALELLEDGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP+KR++ R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPQKRLVRFR 314
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK +ME ++ GGSV +++ +A + LE + VF E +D GVTKGKG + V
Sbjct: 158 KKKPDVMETRVGGGSVDERVDFALELLEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
>gi|315425735|dbj|BAJ47391.1| large subunit ribosomal protein L3, partial [Candidatus
Caldiarchaeum subterraneum]
Length = 289
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K + EI++ GG A+ + A+Q + + + V VF + + +D I VTKGKGF+GV R+
Sbjct: 150 KAPRIAEIKI-GGKPAEALEKAKQLVGKDLRVTDVFKEGQFVDVIAVTKGKGFQGVVKRY 208
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG---AGIH 432
L RK+ K R VA IG W+P V +TV R+GQ GYH RTE NK+I R+G A I+
Sbjct: 209 GVSILQRKSRKTRRGVAAIGPWNPHYVMYTVPRSGQMGYHRRTEFNKRILRIGDDPASIN 268
Query: 433 TKDGKVSVTSRWH 445
K G WH
Sbjct: 269 PKSG-------WH 274
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 65/279 (23%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK+S PRHGS+ + P+ R+A +VK +P + + FIGYK GMT + + P
Sbjct: 4 RKYSRPRHGSLAYLPRGRAASILPRVKHWPDGE-----GVLGFIGYKVGMTMVHYIDNTP 58
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWY 160
S E+ +A T++ PP+ ++G+ Y L + W++ + ++ +R
Sbjct: 59 NSPTQGSEVAKACTVVAAPPLKVIGISLYRNVDGELVNIGKYWSKEVPEDVKR------- 111
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
R F A+++ ++ +R++ TQ +
Sbjct: 112 --RNPTFRPMPS-----------AEEIGQLEDDVDEVRIVVATQPR-------------- 144
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
L K + EI++ GG A+ + A+Q + + + V
Sbjct: 145 -----------------------LVGAGKAPRIAEIKI-GGKPAEALEKAKQLVGKDLRV 180
Query: 281 GQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKK 317
VF + + +D I VTKGKGF+G + + +L+++ +K
Sbjct: 181 TDVFKEGQFVDVIAVTKGKGFQGVVKRYGVSILQRKSRK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V R+ L RK+ K R VA IG W+P V +TV R+GQ GYH RTE K+ L
Sbjct: 204 VVKRYGVSILQRKSRKTRRGVAAIGPWNPHYVMYTVPRSGQMGYHRRTEF---NKRILR- 259
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGC 538
I ++ + SI P G+ +G V +D+L+++G
Sbjct: 260 -IGDDPA--------SINPKSGWHRFGLVKSDYLVLEGS 289
>gi|448565515|ref|ZP_21636382.1| 50S ribosomal protein L3P [Haloferax prahovense DSM 18310]
gi|448583470|ref|ZP_21646826.1| 50S ribosomal protein L3P [Haloferax gibbonsii ATCC 33959]
gi|445715259|gb|ELZ67015.1| 50S ribosomal protein L3P [Haloferax prahovense DSM 18310]
gi|445729699|gb|ELZ81294.1| 50S ribosomal protein L3P [Haloferax gibbonsii ATCC 33959]
Length = 338
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 118/280 (42%), Gaps = 60/280 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR + ++K +P DD + L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSMGFSPRKRVTKEVPRIKSWPSDDGSP--ALQGFAGYKAGMTHVMMVNDEADSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF---YKNWY 160
E VT++ETPPM V + Y +TP+G++ VW + E R +N +
Sbjct: 63 REGMEESVPVTVVETPPMRAVALRAYEQTPYGMKPQTEVWTDEFHDELDRVLDLPAENTF 122
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
S A +A + A +RVI HT
Sbjct: 123 DSDADALREAVE------------------AGEVDDLRVITHT----------------- 147
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PI 278
V +L +KK +ME ++ GGS+ ++ +A + +
Sbjct: 148 ------------------VPAELANVPKKKPDVMETRVGGGSMVERADFALDLVAEGGEH 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ ++ +A + + + VF E +D GVT
Sbjct: 148 VPAELANVPKKKPDVMETRVGGGSMVERADFALDLVAEGGEHEMSDVFRAGEYLDAAGVT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ +G G
Sbjct: 268 KRLIDLGEG 276
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + + G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RADFALDLVAEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + + AS +
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDEASVE--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + +IKG GP KR++ R
Sbjct: 283 --GGFVNYGEVDGSYALIKGSLPGPNKRLLRFR 313
>gi|223477993|ref|YP_002582389.1| 50S ribosomal protein L3e (L3p) [Thermococcus sp. AM4]
gi|214033219|gb|EEB74047.1| LSU ribosomal protein L3e (L3p) [Thermococcus sp. AM4]
Length = 346
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 118/260 (45%), Gaps = 52/260 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ ++K +PKD V + F GYKAGMTHI+ D PG
Sbjct: 7 PRRGSLAFSPRKRARSVVPRIKKWPKDSE---VRMLGFAGYKAGMTHILMIDDSPGL-TK 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KEI VTI+E PP+ + G+ Y + GL + VW L+ +RR K+ K
Sbjct: 63 GKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRI-----KTLPK 117
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+ + ++ KLG+ +DL + V R++ HTQ
Sbjct: 118 NY--GEEDFKAKLGQ---LEDLVNDGEIVDV-RLLVHTQ--------------------- 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
L K +KK +ME + G V K +A++ + + + +V
Sbjct: 151 ----------------PWLIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLH 194
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
+ E++D I VTKGKG +G +
Sbjct: 195 EGELLDVIAVTKGKGTQGPV 214
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Query: 303 GEMIAMKLLK-------KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 355
GE++ ++LL K +KK +ME + G V K +A++ + + + +V + E
Sbjct: 138 GEIVDVRLLVHTQPWLIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGE 197
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVQFTVARAGQKG 413
++D I VTKGKG +G RW K K + R V +G WHP+RV +TV +AGQ G
Sbjct: 198 LLDVIAVTKGKGTQGPVKRWGIKVQFHKAQRAGKGRHVGNLGPWHPARVMWTVPQAGQMG 257
Query: 414 YHHRTELNKKIYRMG 428
+HHRTE NK++ +G
Sbjct: 258 FHHRTEFNKRLIAIG 272
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V +G WHP+RV +TV +AGQ G+HHRTE K+ ++ I N + E IT
Sbjct: 233 RHVGNLGPWHPARVMWTVPQAGQMGFHHRTEF---NKRLIA--IGENGKLILNGNEIEIT 287
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG + +DFLMI+G G KR+I +R
Sbjct: 288 PKGGFPHYGVIRSDFLMIEGSVPGAFKRIIRVR 320
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L K +KK +ME + G V K +A++ + + + +V + E++D I VTKGKG
Sbjct: 153 LIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKG 209
>gi|448611747|ref|ZP_21662177.1| 50S ribosomal protein L3P [Haloferax mucosum ATCC BAA-1512]
gi|445742508|gb|ELZ94002.1| 50S ribosomal protein L3P [Haloferax mucosum ATCC BAA-1512]
Length = 338
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 121/280 (43%), Gaps = 60/280 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ + ++K +P DD + L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSMGFSPRKRAVKEVPRIKSWPSDDGSP--ALQGFAGYKAGMTHVMMVNDEADSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF---YKNWY 160
E VT++ETPPM V + Y +TP+G++ VWA E R ++ +
Sbjct: 63 REGMEESVPVTVVETPPMRAVALRAYEQTPYGMKPKTEVWASEFHDELDRVLDLPAEDTF 122
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
+S A +A + A +RVI HT +
Sbjct: 123 ESDADALREAVE------------------AGEVDDLRVITHTVPSE------------- 151
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PI 278
NV K +PD +ME ++ GGS+ ++ +A + +
Sbjct: 152 ---LKNVPKKKPD-------------------VMETRVGGGSMVERADFALDLVAEGGEH 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ ++ +A + + + VF E +D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSMVERADFALDLVAEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELNKRLIDLGEG 276
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + + G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RADFALDLVAEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + + AS +
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDEASVE--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + ++KG GP KR++ R
Sbjct: 283 --GGFVNYGEVDGSYALVKGSLPGPNKRLLRFR 313
>gi|448329359|ref|ZP_21518659.1| 50S ribosomal protein L3P [Natrinema versiforme JCM 10478]
gi|445614098|gb|ELY67779.1| 50S ribosomal protein L3P [Natrinema versiforme JCM 10478]
Length = 339
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 122/286 (42%), Gaps = 71/286 (24%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ PR GS+GF P+KR+ + +P D PT L F GYKAGMTH+V D+
Sbjct: 5 NTPRKGSLGFGPRKRATSEVPRFNSWPDTDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRR--RFYKNW 159
S E VTI+ETPPM V + Y +TP+G++ VW + E R +
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGMKPITEVWTDEFVPELDRVLDLPGDD 120
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSH 217
Y T AS+ +LR + + +V +RVI HT
Sbjct: 121 YD------TDASE------------DELRGLLEEGRVDDVRVITHT-------------- 148
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
V + +KK +ME ++ GGSV D++ +A LE
Sbjct: 149 ---------------------VPGDVPSVPKKKPDVMETRVGGGSVDDRVEFA---LETV 184
Query: 278 IPVGQ-----VFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 185 ADGGEHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 11/130 (8%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ-----VFAQDEMIDCIGVTKGKGFK 369
+KK +ME ++ GGSV D++ +A LE G+ VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVDDRVEFA---LETVADGGEHVMNDVFRAGEYVDASGVTKGKGTQ 214
Query: 370 GVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +
Sbjct: 215 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDI 274
Query: 428 GAGIH-TKDG 436
G G T DG
Sbjct: 275 GDGADATVDG 284
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV+F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVEFALETVADGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 231 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD---- 283
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 -------GGFVNYGEVDGPHALIKGSLPGPQQRLVRFR 314
>gi|448606195|ref|ZP_21658774.1| 50S ribosomal protein L3P [Haloferax sulfurifontis ATCC BAA-897]
gi|448623080|ref|ZP_21669729.1| 50S ribosomal protein L3P [Haloferax denitrificans ATCC 35960]
gi|445739612|gb|ELZ91119.1| 50S ribosomal protein L3P [Haloferax sulfurifontis ATCC BAA-897]
gi|445753588|gb|EMA05005.1| 50S ribosomal protein L3P [Haloferax denitrificans ATCC 35960]
Length = 338
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 121/280 (43%), Gaps = 60/280 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ + ++K +P DD + L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSMGFSPRKRAVKEVPRIKSWPSDDGSP--ALQGFAGYKAGMTHVMMVNDEADSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF---YKNWY 160
E VT++ETPPM V + Y +TP+G++ VWA E R ++ +
Sbjct: 63 REGMEESVPVTVVETPPMRAVALRAYEQTPYGMKPQTEVWAGEFHDELDRVLDLPAEDTF 122
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
S A +A + A +RVI HT +
Sbjct: 123 DSDADALREAVE------------------AGEVDDLRVITHTVPSE------------- 151
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI-- 278
+NV K +PD +ME ++ GGS+ ++ +A + +
Sbjct: 152 ---LANVPKKKPD-------------------VMETRVGGGSMVERADFALDLVAEGGEH 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ ++ +A + + + VF E +D GVT
Sbjct: 148 VPSELANVPKKKPDVMETRVGGGSMVERADFALDLVAEGGEHEMSDVFRAGEYLDAAGVT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ +G G
Sbjct: 268 KRLIDLGEG 276
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + + G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RADFALDLVAEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + ++AS D
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDDASVD--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + +IKG GP KR++ R
Sbjct: 283 --GGFVNYGEVDGSYALIKGSLPGPNKRLLRFR 313
>gi|433420037|ref|ZP_20405423.1| 50S ribosomal protein L3P [Haloferax sp. BAB2207]
gi|448545986|ref|ZP_21626313.1| 50S ribosomal protein L3P [Haloferax sp. ATCC BAA-646]
gi|448548060|ref|ZP_21627404.1| 50S ribosomal protein L3P [Haloferax sp. ATCC BAA-645]
gi|448557083|ref|ZP_21632518.1| 50S ribosomal protein L3P [Haloferax sp. ATCC BAA-644]
gi|448569070|ref|ZP_21638482.1| 50S ribosomal protein L3P [Haloferax lucentense DSM 14919]
gi|448600511|ref|ZP_21656007.1| 50S ribosomal protein L3P [Haloferax alexandrinus JCM 10717]
gi|432199294|gb|ELK55485.1| 50S ribosomal protein L3P [Haloferax sp. BAB2207]
gi|445703332|gb|ELZ55263.1| 50S ribosomal protein L3P [Haloferax sp. ATCC BAA-646]
gi|445714762|gb|ELZ66520.1| 50S ribosomal protein L3P [Haloferax sp. ATCC BAA-645]
gi|445714952|gb|ELZ66709.1| 50S ribosomal protein L3P [Haloferax sp. ATCC BAA-644]
gi|445725220|gb|ELZ76845.1| 50S ribosomal protein L3P [Haloferax lucentense DSM 14919]
gi|445735228|gb|ELZ86780.1| 50S ribosomal protein L3P [Haloferax alexandrinus JCM 10717]
Length = 338
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 121/280 (43%), Gaps = 60/280 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ + ++K +P DD + L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSMGFSPRKRAVKEVPRIKSWPSDDGSP--ALQGFAGYKAGMTHVMMVNDEADSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF---YKNWY 160
E VT++ETPPM V + Y +TP+G++ VWA E R ++ +
Sbjct: 63 REGMEESVPVTVVETPPMRAVALRAYEQTPYGMKPQTEVWAGEFHDELDRVLDLPAEDTF 122
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
S A +A + A +RVI HT +
Sbjct: 123 DSDADALREAVE------------------AGEVDDLRVITHTVPSE------------- 151
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI-- 278
+NV K +PD +ME ++ GGS+ ++ +A + +
Sbjct: 152 ---LANVPKKKPD-------------------VMETRVGGGSMVERADFALDLVAEGGEH 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ ++ +A + + + VF E +D GVT
Sbjct: 148 VPSELANVPKKKPDVMETRVGGGSMVERADFALDLVAEGGEHEMSDVFRAGEYLDAAGVT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ +G G
Sbjct: 268 KRLIDLGEG 276
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + + G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RADFALDLVAEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + ++AS +
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDDASVE--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + +IKG GP KR++ R
Sbjct: 283 --GGFVNYGEVDGSYALIKGSLPGPNKRLLRFR 313
>gi|333987679|ref|YP_004520286.1| 50S ribosomal protein L3 [Methanobacterium sp. SWAN-1]
gi|333825823|gb|AEG18485.1| ribosomal protein L3 [Methanobacterium sp. SWAN-1]
Length = 336
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 114/263 (43%), Gaps = 62/263 (23%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+A ++ +P+ T+ L F GYK GMTHI R S
Sbjct: 7 PRKGSVAFSPRKRAASETPRITAWPE---TEEACLLGFPGYKVGMTHITMLDSRKSSPTE 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY---KNWYKS 162
EI VTILE PP+V++G+ Y + GL++ + A L ++ +R +N ++
Sbjct: 64 GMEISTPVTILEAPPIVVMGIRAYRQDTRGLKTLADILANDLDEDLQRTISLPKENDLEA 123
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
+ K F + + D IRV+ HT+ + S+
Sbjct: 124 KLKDFKEKMDEIVD--------------------IRVLVHTKPRLASVP----------- 152
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
+KK ++E + G +VA+K+ +A L + +
Sbjct: 153 -------------------------KKKPEILECGVGGKTVAEKLDYAVSVLGKELNPSD 187
Query: 283 VFAQDEMIDCIGVTKGKGFKGEM 305
VFA E D I +TKGKGF+G +
Sbjct: 188 VFADGEHTDSIAITKGKGFQGPV 210
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
+L +KK ++E + G +VA+K+ +A L + + VFA E D I +TKGKGF
Sbjct: 147 RLASVPKKKPEILECGVGGKTVAEKLDYAVSVLGKELNPSDVFADGEHTDSIAITKGKGF 206
Query: 369 KGVTSRWHTK----KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKI 424
+G R+ + K R + + R V IG W+PSR +TVA AGQ GYH RTE NKKI
Sbjct: 207 QGPVKRFGIRIQYGKAARSSKE--RHVGSIGPWNPSRTMWTVAMAGQMGYHKRTEFNKKI 264
Query: 425 YRMGA 429
++G
Sbjct: 265 LKIGG 269
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V IG W+PSR +TVA AGQ GYH RTE KK ++K + + D ++
Sbjct: 229 RHVGSIGPWNPSRTMWTVAMAGQMGYHKRTEF---NKK----ILKIGGADEVD----AVN 277
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
P GGF YG V N + ++KG GP KR++ LRK
Sbjct: 278 PDGGFVKYGLVKNGYFIVKGSVPGPSKRLVMLRK 311
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ K +L +KK ++E + G +VA+K+ +A L + + VFA E D I
Sbjct: 139 RVLVHTKPRLASVPKKKPEILECGVGGKTVAEKLDYAVSVLGKELNPSDVFADGEHTDSI 198
Query: 605 GVTKGKGFKECV 616
+TKGKGF+ V
Sbjct: 199 AITKGKGFQGPV 210
>gi|11499509|ref|NP_070750.1| 50S ribosomal protein L3P [Archaeoglobus fulgidus DSM 4304]
gi|3914742|sp|O28354.1|RL3_ARCFU RecName: Full=50S ribosomal protein L3P
gi|2648621|gb|AAB89331.1| LSU ribosomal protein L3P (rpl3P) [Archaeoglobus fulgidus DSM 4304]
Length = 331
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 116/264 (43%), Gaps = 58/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K+ PR GS+ F P+KR+ +++ +P+ D V + F GYKAGMTH+V DR
Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKN 58
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S +E+V VT++ETPPM + V Y +T +G++ VW+ +L RR
Sbjct: 59 SPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL------ 112
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
KK D K ++ +RV+ +TQ
Sbjct: 113 -------NLPKKEPDVEKLKAAVEN------GASEVRVVTYTQPY--------------- 144
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+ + V K PD E + GG+V + + +A L + I V
Sbjct: 145 -LITGVPKKVPDVMEHRI--------------------GGNVEEALDYAISKLGKEISVS 183
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
+VF + +ID I VTKGKGF+G +
Sbjct: 184 EVFDEGAIIDVIAVTKGKGFQGPV 207
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K +ME ++ GG+V + + +A L + I V +VF + +ID I VTKGKGF+G R
Sbjct: 151 KKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKR 209
Query: 375 WHTKKLPRKTHKGL--RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W L K + R+V +G W+P V++TV +AGQ G+H RTE NK++ ++G
Sbjct: 210 WGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIG 265
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R+V +G W+P V++TV +AGQ G+H RTE K L + +N + IT
Sbjct: 226 RRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEY----NKRLIKIGENG---------EEIT 272
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
P GGF HYG + ++++ G GP KR+I +R R KAH + +
Sbjct: 273 PKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRD----AIRPPKAHFDGVNI 320
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 545 RVITLRKMKLLKKRQKKA-HLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
RV+T + L+ KK +ME ++ GG+V + + +A L + I V +VF + +ID
Sbjct: 136 RVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDV 194
Query: 604 IGVTKGKGFKECV 616
I VTKGKGF+ V
Sbjct: 195 IAVTKGKGFQGPV 207
>gi|448671480|ref|ZP_21687419.1| 50S ribosomal protein L3P [Haloarcula amylolytica JCM 13557]
gi|445766083|gb|EMA17220.1| 50S ribosomal protein L3P [Haloarcula amylolytica JCM 13557]
Length = 338
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 5 SRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 63 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL----DVPE 118
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
A ++ +D L + +R+I HT
Sbjct: 119 DHDPDAAEEQVRDALEAGDLGD-----------VRLITHT-------------------- 147
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 148 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDLVEDGGEHAMN 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSVSDRLDHALDLVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGDG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 192 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 251
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 252 VPQQGQTGYHQRTEL---NKRLIDIGDGDEPTVD-----------GGFVNYGEVDGPYTL 297
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 298 VKGSVPGPDKRLVRFR 313
>gi|448309694|ref|ZP_21499550.1| 50S ribosomal protein L3P [Natronorubrum bangense JCM 10635]
gi|445589551|gb|ELY43781.1| 50S ribosomal protein L3P [Natronorubrum bangense JCM 10635]
Length = 339
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 119/281 (42%), Gaps = 61/281 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P++R+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRQRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G++ VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRVYEDTPYGMKPLTEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D +LR + ++ +RVI HT
Sbjct: 115 ----------DLPGDDYDVDAATDELRGYLEEGRIDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V ++ +KK +ME ++ GGS+ +++ +A + +E
Sbjct: 149 -------------------VPGEVPSMPKKKPDVMETRVGGGSIEERVDFALETVEDGGE 189
Query: 280 --VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ +F E +D GVTKGKG +G + + K++ K A
Sbjct: 190 HVMNDMFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 303 GEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCI 360
GE+ +M +KK +ME ++ GGS+ +++ +A + +E + +F E +D
Sbjct: 151 GEVPSMP-----KKKPDVMETRVGGGSIEERVDFALETVEDGGEHVMNDMFRAGEYVDAS 205
Query: 361 GVTKGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRT 418
GVTKGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RT
Sbjct: 206 GVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRT 265
Query: 419 ELNKKIYRMGAGIH-TKDG 436
ELNK++ +G G T DG
Sbjct: 266 ELNKRLVDIGDGADATVDG 284
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
RV F + G H ++ + Y +G+ G RW +K K +G R
Sbjct: 176 RVDFALETVEDGGEHVMNDMFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 235
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 236 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD--------- 283
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP KR++ R
Sbjct: 284 --GGFVNYGEVDGPHALIKGSLPGPNKRLVRFR 314
>gi|292656685|ref|YP_003536582.1| 50S ribosomal protein L3 [Haloferax volcanii DS2]
gi|448290689|ref|ZP_21481835.1| 50S ribosomal protein L3P [Haloferax volcanii DS2]
gi|291372463|gb|ADE04690.1| ribosomal protein L3 [Haloferax volcanii DS2]
gi|445578060|gb|ELY32475.1| 50S ribosomal protein L3P [Haloferax volcanii DS2]
Length = 338
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 121/280 (43%), Gaps = 60/280 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ + ++K +P DD + L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSMGFSPRKRAVKEVPRIKSWPSDDGSP--ALQGFAGYKAGMTHVMMVNDEADSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF---YKNWY 160
E VT++ETPPM V + Y +TP+G++ VWA E R ++ +
Sbjct: 63 HEGMEESVPVTVVETPPMRAVALRAYEQTPYGMKPQTEVWAGEFHDELDRVLDLPAEDTF 122
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
S A +A + A +RVI HT +
Sbjct: 123 DSDADALREAVE------------------AGEVDDLRVITHTVPSE------------- 151
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PI 278
+NV K +PD +ME ++ GGS+ ++ +A + +
Sbjct: 152 ---LANVPKKKPD-------------------VMETRVGGGSMVERADFALDLVAEGGEH 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ ++ +A + + + VF E +D GVT
Sbjct: 148 VPSELANVPKKKPDVMETRVGGGSMVERADFALDLVAEGGEHEMSDVFRAGEYLDAAGVT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ +G G
Sbjct: 268 KRLIDLGEG 276
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + + G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RADFALDLVAEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + ++AS +
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDDASVE--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + +IKG GP KR++ R
Sbjct: 283 --GGFVNYGEVDGSYALIKGSLPGPNKRLLRFR 313
>gi|448323163|ref|ZP_21512627.1| 50S ribosomal protein L3P [Natronococcus amylolyticus DSM 10524]
gi|445600349|gb|ELY54362.1| 50S ribosomal protein L3P [Natronococcus amylolyticus DSM 10524]
Length = 339
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 118/281 (41%), Gaps = 61/281 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
++PR GS+GF P++R++ + +P DD PT L F GYKAGMTH+V D
Sbjct: 5 NSPRKGSLGFGPRQRASSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDEAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPITEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D T +LR++ + +V +RVI HT
Sbjct: 115 ----------DLPGDDYDADTAEDELRELLEDGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ GGSV +++ +A + +
Sbjct: 149 -------------------VPSAVPSVPKKKPDVMETRVGGGSVDERVDFALELIADGGE 189
Query: 280 --VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ F E +D GVTKGKG +G + + K++ K A
Sbjct: 190 HVMNDTFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV +++ +A + + + F E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVDERVDFALELIADGGEHVMNDTFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGDG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTE-LNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
RV F + G H + Y +G+ G RW +K K +G R
Sbjct: 176 RVDFALELIADGGEHVMNDTFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 235
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 236 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD--------- 283
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP KR++ R
Sbjct: 284 --GGFVNYGEVDGPHALIKGSLPGPNKRLVRFR 314
>gi|448681421|ref|ZP_21691554.1| 50S ribosomal protein L3P [Haloarcula argentinensis DSM 12282]
gi|445767954|gb|EMA19047.1| 50S ribosomal protein L3P [Haloarcula argentinensis DSM 12282]
Length = 338
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 5 SRPRKGSMGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 63 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T + D + +D + +R+I HT
Sbjct: 113 ----TLDVPEDHDPDAAEEQIRDAHEAGDLGD-LRLITHT-------------------- 147
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 148 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMN 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 192 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 251
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 252 VPQQGQTGYHQRTEL---NKRLIDIGEGDEPTVD-----------GGFVNYGEVDGPYTL 297
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 298 VKGSVPGPDKRLVRFR 313
>gi|390960794|ref|YP_006424628.1| 50S ribosomal protein L3P [Thermococcus sp. CL1]
gi|390519102|gb|AFL94834.1| 50S ribosomal protein L3P [Thermococcus sp. CL1]
Length = 347
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 52/264 (19%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GS+ + P+KR+ +++ +P+D V + F GYKAGMTH++ DRPG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPQDSE---VRMLGFAGYKAGMTHVLMIDDRPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
KEI VT++E PP+ + G+ Y + GL + VW L+ RRR K
Sbjct: 60 L-TKGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVRRRI-----K 113
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ K + + + ++ KLG+ +DL + V R++ HTQ
Sbjct: 114 TLPKNYDEEA--FKAKLGQ---LEDLVNDGEIVDV-RLLVHTQ----------------- 150
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
L K +KK +ME + G V K +A++ + + +
Sbjct: 151 --------------------PWLIKLKKKPEVMEYAIGGDDVRAKFDYAKEKIGKELRAS 190
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
+V + E++D I VTKGKG +G +
Sbjct: 191 EVLHEGELLDVIAVTKGKGTQGPV 214
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Query: 303 GEMIAMKLLK-------KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 355
GE++ ++LL K +KK +ME + G V K +A++ + + + +V + E
Sbjct: 138 GEIVDVRLLVHTQPWLIKLKKKPEVMEYAIGGDDVRAKFDYAKEKIGKELRASEVLHEGE 197
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVQFTVARAGQKG 413
++D I VTKGKG +G RW K K + R + +G WHP+RV +TV +AGQ G
Sbjct: 198 LLDVIAVTKGKGTQGPVKRWGVKIQFHKAQRAGKGRHIGNLGPWHPTRVMWTVPQAGQMG 257
Query: 414 YHHRTELNKKIYRMG 428
+HHRTE NK++ +G
Sbjct: 258 FHHRTEFNKRLIAIG 272
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R + +G WHP+RV +TV +AGQ G+HHRTE K L + +N + E IT
Sbjct: 233 RHIGNLGPWHPTRVMWTVPQAGQMGFHHRTEF----NKRLIAIGENGKLKLDEKNEIEIT 288
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG + +DFLMI+G G KR+I +R
Sbjct: 289 PKGGFPHYGIIRSDFLMIQGTVPGSFKRIIRVR 321
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L K +KK +ME + G V K +A++ + + + +V + E++D I VTKGKG
Sbjct: 153 LIKLKKKPEVMEYAIGGDDVRAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKG 209
>gi|335437513|ref|ZP_08560289.1| 50S ribosomal protein L3P [Halorhabdus tiamatea SARL4B]
gi|334895861|gb|EGM34024.1| 50S ribosomal protein L3P [Halorhabdus tiamatea SARL4B]
Length = 338
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 120/275 (43%), Gaps = 50/275 (18%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ + +P DD +P + F GYKAGM+H+V D P S
Sbjct: 5 SRPRKGSLGYGPRTRATSETPRFNSWP-DDEGQP-GVQGFAGYKAGMSHVVVINDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+GLR VW + ++ R
Sbjct: 63 REGMEETVPVTVVETPPMRAVALRAYEDTPYGLRPLTEVWTDEFHEDLDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
A ++ QD+ G + +D + V R+I HT D P
Sbjct: 113 --AIDLPAE--QDRDGAEAQIRDALDAGRLGDV-RLITHTV-------------PGDLP- 153
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
+V K +PD E+ V L R + H +E+ +GG A + V
Sbjct: 154 --SVPKNKPDVMETRVGGGSLADRLE--HGLELVADGGEYA---------------MTDV 194
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
F E D GVTKGKG +G + + K++ K A
Sbjct: 195 FRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG------QVFAQDEMIDCIGVTKGKGF 368
+ K +ME ++ GGS+AD++ +H + + G VF E D GVTKGKG
Sbjct: 157 KNKPDVMETRVGGGSLADRL----EHGLELVADGGEYAMTDVFRAGEYADVAGVTKGKGT 212
Query: 369 KGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
+G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++
Sbjct: 213 QGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLID 272
Query: 427 MG 428
G
Sbjct: 273 FG 274
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 423 KIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTV 475
++R G AG+ G RW +K K +G R+ + +G W+PSRV+ TV
Sbjct: 193 DVFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTV 252
Query: 476 ARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMI 535
+ GQ GYH RTEL N D+ E +TP GGF +YGEV + +I
Sbjct: 253 PQQGQTGYHQRTEL-------------NKRLIDFG-DEDDVTPEGGFVNYGEVEGHYALI 298
Query: 536 KGCCMGPKKRVITLR 550
KG GP R++ LR
Sbjct: 299 KGSLPGPDGRLVRLR 313
>gi|257053359|ref|YP_003131192.1| 50S ribosomal protein L3P [Halorhabdus utahensis DSM 12940]
gi|256692122|gb|ACV12459.1| ribosomal protein L3 [Halorhabdus utahensis DSM 12940]
Length = 338
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 120/275 (43%), Gaps = 50/275 (18%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ + +P DD +P + F GYKAGM+H+V D P S
Sbjct: 5 SRPRKGSLGYGPRTRATSETPRFNSWP-DDEGQP-GVQGFAGYKAGMSHVVVINDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+GLR VW + ++ R
Sbjct: 63 REGMEETVPVTVVETPPMRAVALRAYEDTPYGLRPLTEVWTDEFHEDLDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
A ++ QD+ G + +D + V R+I HT D P
Sbjct: 113 --AIDLPAE--QDRDGAEAQIRDALDAGRLGDV-RLITHTV-------------PGDLP- 153
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
+V K +PD E+ V L R + H +E+ +GG A + V
Sbjct: 154 --SVPKNKPDVMETRVGGGSLADRLE--HGLELVADGGEYA---------------MTDV 194
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
F E D GVTKGKG +G + + K++ K A
Sbjct: 195 FRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG------QVFAQDEMIDCIGVTKGKGF 368
+ K +ME ++ GGS+AD++ +H + + G VF E D GVTKGKG
Sbjct: 157 KNKPDVMETRVGGGSLADRL----EHGLELVADGGEYAMTDVFRAGEYADVAGVTKGKGT 212
Query: 369 KGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
+G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++
Sbjct: 213 QGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLID 272
Query: 427 MG 428
G
Sbjct: 273 FG 274
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 423 KIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTV 475
++R G AG+ G RW +K K +G R+ + +G W+PSRV+ TV
Sbjct: 193 DVFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTV 252
Query: 476 ARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMI 535
+ GQ GYH RTEL N D+ E +TP GGF +YGEV ++ +I
Sbjct: 253 PQQGQTGYHQRTEL-------------NKRLIDFG-DEDDVTPDGGFVNYGEVEGNYALI 298
Query: 536 KGCCMGPKKRVITLR 550
KG GP R++ LR
Sbjct: 299 KGSIPGPDSRLVRLR 313
>gi|336252440|ref|YP_004595547.1| 50S ribosomal protein L3 [Halopiger xanaduensis SH-6]
gi|335336429|gb|AEH35668.1| ribosomal protein L3 [Halopiger xanaduensis SH-6]
Length = 339
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 57/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
+APR GS+GF P+KR++ + +P DD +P L F GYKAGMTH+V D+ S
Sbjct: 5 NAPRKGSLGFGPRKRASSEVPRFNSWP-DDEGQPT-LQGFAGYKAGMTHVVMVDDQSNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VTI+ETPPM V + Y +T +G + VW + E R
Sbjct: 63 TEGMEQTVPVTIVETPPMRAVALRAYEDTAYGKQPVTEVWTDEFVSELDRVL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
D +LR + + +V +RVI HT
Sbjct: 115 --------DLPGDDYDPDAAEDELRGLLEEGRVDDVRVITHT------------------ 148
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
V ++ +KK +ME ++ GG+V +++ +A + LE
Sbjct: 149 -----------------VPTEIPSVPKKKPDVMETRVGGGAVEERVDFALELLEDGGEHV 191
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 192 MNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GG+V +++ +A + LE + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGAVEERVDFALELLEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGDG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFALELLEDGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 ------GGFINYGEVDGPHALIKGSLPGPEQRLVRFR 314
>gi|148642822|ref|YP_001273335.1| 50S ribosomal protein L3P [Methanobrevibacter smithii ATCC 35061]
gi|222445053|ref|ZP_03607568.1| hypothetical protein METSMIALI_00670 [Methanobrevibacter smithii
DSM 2375]
gi|261350378|ref|ZP_05975795.1| ribosomal protein L3 [Methanobrevibacter smithii DSM 2374]
gi|166233159|sp|A5UL89.1|RL3_METS3 RecName: Full=50S ribosomal protein L3P
gi|148551839|gb|ABQ86967.1| ribosomal protein L3p [Methanobrevibacter smithii ATCC 35061]
gi|222434618|gb|EEE41783.1| archaeal ribosomal protein L3 [Methanobrevibacter smithii DSM 2375]
gi|288861161|gb|EFC93459.1| ribosomal protein L3 [Methanobrevibacter smithii DSM 2374]
Length = 336
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 58/259 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTH-IVREADRPGSKI 104
PR GS+ F P+KR+A+ ++K +P++D K L GYK GMTH +V ++D+ S
Sbjct: 7 PRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSPT 62
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQ 164
N ++ VT+LE PP+V++G+ Y +T GL+ V A++L +E R+
Sbjct: 63 NGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKI--------- 113
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
++ ++ K K+ V+ T++ + +H N P
Sbjct: 114 -----------------SLPKEYNKSEAIAKIQGVLDKTEDIKVLVHTN--------PKV 148
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
++V K +PD + E + G + +K+ A + L + +
Sbjct: 149 TSVPKKKPD-------------------IFECGIGGANPEEKLNTALELLGNEVKASDIL 189
Query: 285 AQDEMIDCIGVTKGKGFKG 303
+ + +D I TKGKGF+G
Sbjct: 190 NEGQFVDAIATTKGKGFQG 208
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK + E + G + +K+ A + L + + + + +D I TKGKGF+GV R
Sbjct: 153 KKKPDIFECGIGGANPEEKLNTALELLGNEVKASDILNEGQFVDAIATTKGKGFQGVVKR 212
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
W + + + G R V IG W PSR +TVA+AGQ GYH RTE NKKI ++ +
Sbjct: 213 WGIRIQYGKAVRAGKGRHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIAS 269
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V IG W PSR +TVA+AGQ GYH RTE KK L + AS D I
Sbjct: 229 RHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEF---NKKILKI-----ASAD---EVDQIN 277
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
P GGF YG V ND++++KG GP KR++ LR+
Sbjct: 278 PDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQ 311
>gi|218117235|emb|CAQ37747.1| 60S ribosomal protein L3 [Brachionus plicatilis]
Length = 130
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 55/76 (72%)
Query: 476 ARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMI 535
ARAGQKGYHHRTE+ + S K NA T++D EKSITPMGGFP YG V DF+M+
Sbjct: 1 ARAGQKGYHHRTEINKKVYRIGSGADKANAKTEFDPAEKSITPMGGFPQYGIVRQDFVMV 60
Query: 536 KGCCMGPKKRVITLRK 551
KGC +G KKR ITLRK
Sbjct: 61 KGCIVGTKKRPITLRK 76
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 407 ARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
ARAGQKGYHHRTE+NKK+YR+G+G + K
Sbjct: 1 ARAGQKGYHHRTEINKKVYRIGSGADKANAKT 32
>gi|341582063|ref|YP_004762555.1| 50S ribosomal protein L3P [Thermococcus sp. 4557]
gi|340809721|gb|AEK72878.1| 50S ribosomal protein L3P [Thermococcus sp. 4557]
Length = 347
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 56/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GS+ + P+KR+ ++K +PKD V + F GYKAGMTH++ DRPG
Sbjct: 3 KIHRPRRGSLAYSPRKRARSIVPRIKKWPKDSE---VRMLGFAGYKAGMTHVLMIDDRPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
KEI VTI+E PP+ + G+ Y + GL + VW L+ +RR
Sbjct: 60 L-TKGKEIFMPVTIVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDHVKRR------- 111
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
K + ++ K +AQ L ++ + ++ +R++ HTQ
Sbjct: 112 -----IKTLPKNYDEEAFKAKLAQ-LEELIESGEIVDVRLLVHTQ--------------- 150
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
L K +KK +ME + G V K +A++ + + +
Sbjct: 151 ----------------------PWLIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELR 188
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKG 303
+V + E++D I VTKGKG +G
Sbjct: 189 ASEVLHEGELLDIIAVTKGKGTQG 212
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 9/135 (6%)
Query: 303 GEMIAMKLLK-------KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 355
GE++ ++LL K +KK +ME + G V K +A++ + + + +V + E
Sbjct: 138 GEIVDVRLLVHTQPWLIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGE 197
Query: 356 MIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKG 413
++D I VTKGKG +G RW K K + R + +G WHP+RV +TV AGQ G
Sbjct: 198 LLDIIAVTKGKGTQGPVKRWGVKIQFHKAQRAGKARHIGNLGPWHPTRVMWTVPLAGQMG 257
Query: 414 YHHRTELNKKIYRMG 428
+HHRTE NK++ +G
Sbjct: 258 FHHRTEFNKRLIAIG 272
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R + +G WHP+RV +TV AGQ G+HHRTE K L + +N D E IT
Sbjct: 233 RHIGNLGPWHPTRVMWTVPLAGQMGFHHRTEF----NKRLIAIGENGVLKLGDKKEIEIT 288
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG + +DFLMI+G G KR+I +R
Sbjct: 289 PKGGFPHYGVIRSDFLMIQGTVPGAFKRIIRVR 321
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L K +KK +ME + G V K +A++ + + + +V + E++D I VTKGKG
Sbjct: 153 LIKLKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDIIAVTKGKG 209
>gi|448352597|ref|ZP_21541379.1| 50S ribosomal protein L3P [Natrialba hulunbeirensis JCM 10989]
gi|445642159|gb|ELY95229.1| 50S ribosomal protein L3P [Natrialba hulunbeirensis JCM 10989]
Length = 340
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 121/282 (42%), Gaps = 62/282 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P++R++ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRQRASSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKSN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKQPVTEVWTDEFVPELDRVLDLPGDD 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
A A +LR + + +V +RVI HT
Sbjct: 121 YDTDA----------------AADELRGLLEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ GGSV +++ +A + +E+
Sbjct: 149 -------------------VPGDVPSMPKKKPDVMETRVGGGSVEERVDYALELVEEDGG 189
Query: 280 ---VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKGV 371
+KK +ME ++ GGSV +++ +A + +E+ + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVEERVDYALELVEEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGP 217
Query: 372 TSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 218 VKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGD 277
Query: 430 GIH-TKDG 436
G T DG
Sbjct: 278 GADATVDG 285
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV + + + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDYALELVEEDGGEH---VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 232
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 233 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD----- 284
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++IKG GP KR++ R
Sbjct: 285 ------GGFVNYGEVDGPHVLIKGSLPGPNKRLVRFR 315
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKEC 615
+KK +ME ++ GGSV +++ +A + +E+ + VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEERVDYALELVEEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGP 217
Query: 616 V 616
V
Sbjct: 218 V 218
>gi|289579898|ref|YP_003478364.1| 50S ribosomal protein L3 [Natrialba magadii ATCC 43099]
gi|448281138|ref|ZP_21472446.1| 50S ribosomal protein L3P [Natrialba magadii ATCC 43099]
gi|448358804|ref|ZP_21547478.1| 50S ribosomal protein L3P [Natrialba chahannaoensis JCM 10990]
gi|289529451|gb|ADD03802.1| ribosomal protein L3 [Natrialba magadii ATCC 43099]
gi|445579462|gb|ELY33856.1| 50S ribosomal protein L3P [Natrialba magadii ATCC 43099]
gi|445644484|gb|ELY97497.1| 50S ribosomal protein L3P [Natrialba chahannaoensis JCM 10990]
Length = 340
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 121/282 (42%), Gaps = 62/282 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P++R++ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRQRASSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKSN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEQTVPVTIVETPPMRAVALRAYEDTPYGKQPVTEVWTDEFVPELDRVLDLPGDD 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
A A +LR + + +V +RVI HT
Sbjct: 121 YDTDA----------------AADELRGLLEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ GGSV +++ +A + +E+
Sbjct: 149 -------------------VPGDVPSMPKKKPDVMETRVGGGSVEERVDYALELVEEDGG 189
Query: 280 ---VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 EHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 231
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKGV 371
+KK +ME ++ GGSV +++ +A + +E+ + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVEERVDYALELVEEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGP 217
Query: 372 TSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 218 VKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGD 277
Query: 430 GIH-TKDG 436
G T DG
Sbjct: 278 GADATVDG 285
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV + + + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDYALELVEEDGGEH---VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 232
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 233 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD----- 284
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++IKG GP KR++ R
Sbjct: 285 ------GGFVNYGEVDGPHVLIKGSLPGPNKRLVRFR 315
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP---VGQVFAQDEMIDCIGVTKGKGFKEC 615
+KK +ME ++ GGSV +++ +A + +E+ + VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEERVDYALELVEEDGGEHVMNDVFRAGEYVDASGVTKGKGTQGP 217
Query: 616 V 616
V
Sbjct: 218 V 218
>gi|159040903|ref|YP_001540155.1| 50S ribosomal protein L3P [Caldivirga maquilingensis IC-167]
gi|212288253|sp|A8MB75.1|RL3_CALMQ RecName: Full=50S ribosomal protein L3P
gi|157919738|gb|ABW01165.1| ribosomal protein L3 [Caldivirga maquilingensis IC-167]
Length = 347
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 120/265 (45%), Gaps = 53/265 (20%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GSM +YP+KR++ +++ +P D KP L F+GYKAGM H+ DR
Sbjct: 4 KIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPT-LLGFVGYKAGMVHVTVVDDRKT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETP--HGLRSFKTVWAEHLSQECRRRFYKNW 159
S KE+V+AVT++ETPP+ +VG+ Y P L S W ++ E R+
Sbjct: 63 SPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWV-NIPNEVRK------ 115
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
Y +R+ +K DL+ + I+VIA T
Sbjct: 116 YIARR------IPTLPEKFDTDKALADLQGLLDSVSYIKVIAMT---------------- 153
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
QP ++ V K P+ ++EI + G ++ ++ +A L + +
Sbjct: 154 -QPYKAGVGKKTPE-------------------VLEIPVGGVPTIDEQFKYASGLLGKEV 193
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VF +++D IGVTKGKG +G
Sbjct: 194 KPTDVFKPGQLVDVIGVTKGKGTQG 218
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 315 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+K ++EI + G ++ ++ +A L + + VF +++D IGVTKGKG +GV
Sbjct: 162 KKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIK 221
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM---G 428
R+ K+LPR K KG R+ +G P+ V +T R GQ G+H RTE NK+I ++ G
Sbjct: 222 RFGVKELPRWHKHRKGSRRTGTVGP-KPA-VMYTQPRMGQMGFHRRTEYNKRILKISDNG 279
Query: 429 AGIHTKDG 436
+ I K G
Sbjct: 280 SEITPKGG 287
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G+ G V R+ K+LPR K KG R+ +G P+ V +T R GQ G+H RT
Sbjct: 209 GVTKGKGTQGVIKRFGVKELPRWHKHRKGSRRTGTVGP-KPA-VMYTQPRMGQMGFHRRT 266
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
E K+ L I +N S ITP GGF HYG V + +++I+G G KR+I
Sbjct: 267 E---YNKRILK--ISDNGS--------EITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLI 313
Query: 548 TLR 550
R
Sbjct: 314 AFR 316
>gi|313125790|ref|YP_004036060.1| 50S ribosomal protein L3 [Halogeometricum borinquense DSM 11551]
gi|448285629|ref|ZP_21476870.1| 50S ribosomal protein L3P [Halogeometricum borinquense DSM 11551]
gi|312292155|gb|ADQ66615.1| LSU ribosomal protein L3P [Halogeometricum borinquense DSM 11551]
gi|445576265|gb|ELY30722.1| 50S ribosomal protein L3P [Halogeometricum borinquense DSM 11551]
Length = 338
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 119/280 (42%), Gaps = 58/280 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSM + P++R+A+ +++ +P DD + L F GYKAGMT ++ D S
Sbjct: 5 SRPRKGSMAYSPRQRAAKEVPRIRSWPDDDGSP--GLQGFAGYKAGMTQVMMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V V Y +TP+G + VWA + R
Sbjct: 63 REGMEEAVPVTVVETPPMRAVAVRAYEDTPYGAKPLTEVWASEFVENLDRTL----DLPS 118
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ F + A DLR + +V IRVI HT
Sbjct: 119 EDTFEED-------------ADDLRAAVEAGEVDDIRVITHT------------------ 147
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--P 279
MK + K KK +ME ++ GGS+ ++ +A +E+
Sbjct: 148 ---------------VPASMKNIPK--KKPDVMETRVGGGSLQERSDFALDLVEEGGEHS 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 191 MSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHAR 230
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 307 AMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTK 364
+MK + K KK +ME ++ GGS+ ++ +A +E+ + VF E +D GVTK
Sbjct: 151 SMKNIPK--KKPDVMETRVGGGSLQERSDFALDLVEEGGEHSMSDVFRAGEYLDAAGVTK 208
Query: 365 GKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNK 422
GKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK
Sbjct: 209 GKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELNK 268
Query: 423 KIYRMGAGIH-TKDG 436
++ +G G T DG
Sbjct: 269 RLIDLGDGDDATVDG 283
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + + G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RSDFALDLVEEGGEHSMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + ++A+ D
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGDGDDATVD--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF YGEV+ + ++KG GP KR++ R
Sbjct: 283 --GGFVGYGEVDGPYALVKGSLPGPDKRLLRFR 313
>gi|170291100|ref|YP_001737916.1| 50S ribosomal protein L3P [Candidatus Korarchaeum cryptofilum OPF8]
gi|170175180|gb|ACB08233.1| ribosomal protein L3 [Candidatus Korarchaeum cryptofilum OPF8]
Length = 332
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 57/274 (20%)
Query: 47 RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINK 106
RHGS+ +YP+KR+A + + +P+ KP L AF GYK GM H++ + DRPG
Sbjct: 4 RHGSLQYYPRKRAATQKALFRSYPELSVDKPT-LVAFPGYKVGMVHVLLKEDRPGKLNLG 62
Query: 107 KEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKA 166
++I A T++ETPP+ IVG Y E +GL+ T R K SR
Sbjct: 63 QQITLASTVIETPPIEIVGFRAYKEGYYGLKPLTTAL----------RIEKKDPISRTLT 112
Query: 167 FTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSN 226
+ + + L K A+ IR++++T+ +H
Sbjct: 113 IGEGVDNFNEALSKLEGAK--------VSEIRILSYTRPDLAGIH--------------- 149
Query: 227 VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQ 286
+KK MEI + GG + ++I +A+ + + V VF
Sbjct: 150 ---------------------KKKPEFMEIPVKGGEMEERIEFAKSLVGSQLKVDSVFKV 188
Query: 287 DEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKA 318
+++D VTKG G++G + ++LL+ + K
Sbjct: 189 GQLVDVTAVTKGHGWQGVVRRFGIELLRHKAGKG 222
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK MEI + GG + ++I +A+ + + V VF +++D VTKG G++GV R
Sbjct: 150 KKKPEFMEIPVKGGEMEERIEFAKSLVGSQLKVDSVFKVGQLVDVTAVTKGHGWQGVVRR 209
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+ + L K KG +V +G+ HP V + V RAGQ GYH RTE NK+I MG
Sbjct: 210 FGIELLRHKAGKGRWRVGSLGSRHPPYVTWRVPRAGQTGYHKRTEYNKRILMMG 263
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V R+ + L K KG +V +G+ HP V + V RAGQ GYH RTE K+ L M
Sbjct: 206 VVRRFGIELLRHKAGKGRWRVGSLGSRHPPYVTWRVPRAGQTGYHKRTE---YNKRILMM 262
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ D DL +P GGF +YG + + ++++ G GP KR + +R
Sbjct: 263 --GDLTKGDLDL-----SPKGGFKNYGILRSQYILLSGSVPGPAKRFVFIR 306
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
R+++ + L +KK MEI + GG + ++I +A+ + + V VF +++D
Sbjct: 136 RILSYTRPDLAGIHKKKPEFMEIPVKGGEMEERIEFAKSLVGSQLKVDSVFKVGQLVDVT 195
Query: 605 GVTKGKGFKECV 616
VTKG G++ V
Sbjct: 196 AVTKGHGWQGVV 207
>gi|257387876|ref|YP_003177649.1| 50S ribosomal protein L3P [Halomicrobium mukohataei DSM 12286]
gi|257170183|gb|ACV47942.1| ribosomal protein L3 [Halomicrobium mukohataei DSM 12286]
Length = 338
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 112/275 (40%), Gaps = 50/275 (18%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+A + +P DD L F GYKAGMTH+ D P S
Sbjct: 5 SRPRKGSLGYGPRTRAANETPRFNSWPSDD--GQAGLQGFAGYKAGMTHVTLVNDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPP+ V V Y +TP+G R VW + E R
Sbjct: 63 REGMEETVPVTVVETPPVRAVAVRAYEDTPYGKRPLTEVWTDEFHSELDRAL----DLPE 118
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
A ++ +D L IA +RV+ HT +
Sbjct: 119 GHDADAAEEQVRDALDAGDIAD-----------VRVVTHTVPDE---------------- 151
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
+NV K +PD E+ V L R + H +E+ +GG A + V
Sbjct: 152 LANVPKKKPDVMETRVGGGSLSDRFE--HALELVDDGGEHA---------------MNDV 194
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
F E D VTKGKG +G + + K++ K A
Sbjct: 195 FRAGEYADIAAVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS++D+ A + ++ + VF E D VT
Sbjct: 148 VPDELANVPKKKPDVMETRVGGGSLSDRFEHALELVDDGGEHAMNDVFRAGEYADIAAVT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ +G G
Sbjct: 268 KRLIDIGDG 276
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 14/93 (15%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R++ +G W+PSRV+ TV + GQ GYH RTEL K+ + + ++AS D
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDIGDGDDASVD--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + ++KG GP +R++ R
Sbjct: 283 --GGFVNYGEVDGPYTLVKGSVPGPDQRLVRFR 313
>gi|448648021|ref|ZP_21679499.1| 50S ribosomal protein L3P [Haloarcula californiae ATCC 33799]
gi|445775891|gb|EMA26886.1| 50S ribosomal protein L3P [Haloarcula californiae ATCC 33799]
Length = 338
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 5 SRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 63 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T + D + +D + +R+I HT
Sbjct: 113 ----TLDVPEDHDPDAAEEQIRDAHEAGDLGD-LRLITHT-------------------- 147
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 148 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDLVEDGGEHAMN 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSVSDRLDHALDLVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGDG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 192 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 251
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 252 VPQQGQTGYHQRTEL---NKRLIDIGDGDEPTVD-----------GGFVNYGEVDGPYTL 297
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 298 VKGSVPGPDKRLVRFR 313
>gi|448685260|ref|ZP_21693252.1| 50S ribosomal protein L3P [Haloarcula japonica DSM 6131]
gi|445781871|gb|EMA32722.1| 50S ribosomal protein L3P [Haloarcula japonica DSM 6131]
Length = 338
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 5 SRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 63 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T + D + +D + +R+I HT
Sbjct: 113 ----TLDVPEDHDPDAAEEQIRDAHEAGDLGD-LRLITHT-------------------- 147
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 148 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDLVEDGGEHAMN 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSVSDRLDHALDLVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 192 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 251
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 252 VPQQGQTGYHQRTEL---NKRLIDIGEGDEPTVD-----------GGFVNYGEVDGPYTL 297
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 298 VKGSVPGPDKRLVRFR 313
>gi|322372168|ref|ZP_08046709.1| 50S ribosomal protein L3P [Haladaptatus paucihalophilus DX253]
gi|320548177|gb|EFW89850.1| 50S ribosomal protein L3P [Haladaptatus paucihalophilus DX253]
Length = 338
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 115/277 (41%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KR+ + +P D +P L F GYKAGMTH+V D S
Sbjct: 5 SRPRKGSLGFGPRKRATSEVPRFNSWPDSD-GQP-SLQGFAGYKAGMTHVVMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VTI+ETPPM V + Y +TP+G + VW E R
Sbjct: 63 REGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPMTEVWGSEFHDELDRTLNVPENHDA 122
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
A +D+L A D+ + RVI HT
Sbjct: 123 DAA--------EDELRAAIEAGDVADL-------RVITHTVPSD---------------- 151
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
NV K +PD +ME ++ GGS++D+ +A + LE +
Sbjct: 152 LKNVPKKRPD-------------------VMETRVGGGSISDRADFALELLEDGGEHDIT 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
VF E +D GVTKGKG +G + + K++ K A
Sbjct: 193 DVFRAGEYLDTSGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 4/118 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K+ +ME ++ GGS++D+ +A + LE + VF E +D GVTKGKG +G
Sbjct: 157 KKRPDVMETRVGGGSISDRADFALELLEDGGEHDITDVFRAGEYLDTSGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELNKRLISLG 274
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
R F + G H T+ ++R G +G+ G RW +K K
Sbjct: 174 DRADFALELLEDGGEHDITD----VFRAGEYLDTSGVTKGKGTQGPVKRWGVQKRKGKHA 229
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ +S+ + AS D
Sbjct: 230 RQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLISLGDDDEASVD---- 282
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + +IKG GP KR++ R
Sbjct: 283 -------GGFVNYGEVDGPYALIKGSVPGPNKRLVRFR 313
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 545 RVITLRKMKLLKK-RQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMI 601
RVIT LK +K+ +ME ++ GGS++D+ +A + LE + VF E +
Sbjct: 142 RVITHTVPSDLKNVPKKRPDVMETRVGGGSISDRADFALELLEDGGEHDITDVFRAGEYL 201
Query: 602 DCIGVTKGKGFKECV 616
D GVTKGKG + V
Sbjct: 202 DTSGVTKGKGTQGPV 216
>gi|148801|gb|AAA86859.1| ribosomal protein L3 [Haloarcula marismortui]
Length = 338
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 5 SRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 63 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T + D + +D + +R+I HT
Sbjct: 113 ----TLDVPEDHDPDAAEEQIRDAHEAGDLGD-LRLITHT-------------------- 147
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 148 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMN 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 192 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 251
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 252 VPQQGQTGYHQRTEL---NKRLIDIGEGDEPTVD-----------GGFVNYGEVDGPYTL 297
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 298 VKGSVPGPDKRLVPFR 313
>gi|55378384|ref|YP_136234.1| 50S ribosomal protein L3P [Haloarcula marismortui ATCC 43049]
gi|344212413|ref|YP_004796733.1| 50S ribosomal protein L3P [Haloarcula hispanica ATCC 33960]
gi|448636987|ref|ZP_21675435.1| 50S ribosomal protein L3P [Haloarcula sinaiiensis ATCC 33800]
gi|57015335|sp|P20279.5|RL3_HALMA RecName: Full=50S ribosomal protein L3P; AltName: Full=Hl1;
AltName: Full=Hmal3
gi|50513471|pdb|1S72|B Chain B, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
gi|66360785|pdb|1YHQ|B Chain B, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
gi|66360818|pdb|1YI2|B Chain B, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
gi|66360851|pdb|1YIJ|B Chain B, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
gi|66360884|pdb|1YIT|B Chain B, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
gi|66360917|pdb|1YJ9|B Chain B, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
gi|66360950|pdb|1YJN|B Chain B, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
gi|66360983|pdb|1YJW|B Chain B, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
gi|83753127|pdb|1VQ4|B Chain B, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
gi|83753159|pdb|1VQ5|B Chain B, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
gi|83753191|pdb|1VQ6|B Chain B, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
gi|83753223|pdb|1VQ7|B Chain B, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
gi|83753254|pdb|1VQ8|B Chain B, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
gi|83753286|pdb|1VQ9|B Chain B, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
gi|83753317|pdb|1VQK|B Chain B, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
gi|83753348|pdb|1VQL|B Chain B, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
gi|83753379|pdb|1VQM|B Chain B, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
gi|83753411|pdb|1VQN|B Chain B, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
gi|83753442|pdb|1VQO|B Chain B, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
gi|83753474|pdb|1VQP|B Chain B, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
gi|145580174|pdb|2OTJ|B Chain B, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
gi|171848838|pdb|2QA4|B Chain B, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
gi|188596003|pdb|3CC2|B Chain B, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
gi|188596034|pdb|3CC4|B Chain B, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
gi|188596065|pdb|3CC7|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
gi|188596096|pdb|3CCE|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
gi|188596127|pdb|3CCJ|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
gi|188596158|pdb|3CCL|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
gi|188596189|pdb|3CCM|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
gi|188596220|pdb|3CCQ|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
gi|188596251|pdb|3CCR|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
gi|188596282|pdb|3CCS|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
gi|188596313|pdb|3CCU|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
gi|188596344|pdb|3CCV|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
gi|188596375|pdb|3CD6|B Chain B, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
gi|194368706|pdb|3CPW|B Chain B, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
gi|206581909|pdb|3CMA|B Chain B, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
gi|206581942|pdb|3CME|B Chain B, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
gi|208435496|pdb|2QEX|B Chain B, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
gi|290790037|pdb|3I55|B Chain B, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
gi|290790068|pdb|3I56|B Chain B, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
gi|374977943|pdb|4ADX|B Chain B, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
gi|55231109|gb|AAV46528.1| 50S ribosomal protein L3 [Haloarcula marismortui ATCC 43049]
gi|343783768|gb|AEM57745.1| 50S ribosomal protein L3P [Haloarcula hispanica ATCC 33960]
gi|445765293|gb|EMA16432.1| 50S ribosomal protein L3P [Haloarcula sinaiiensis ATCC 33800]
Length = 338
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 5 SRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 63 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T + D + +D + +R+I HT
Sbjct: 113 ----TLDVPEDHDPDAAEEQIRDAHEAGDLGD-LRLITHT-------------------- 147
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 148 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMN 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 192 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 251
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 252 VPQQGQTGYHQRTEL---NKRLIDIGEGDEPTVD-----------GGFVNYGEVDGPYTL 297
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 298 VKGSVPGPDKRLVRFR 313
>gi|15825944|pdb|1JJ2|B Chain B, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
gi|20150989|pdb|1KQS|B Chain B, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
gi|22218923|pdb|1K8A|D Chain D, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
gi|22218957|pdb|1K9M|D Chain D, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
gi|22219000|pdb|1KD1|D Chain D, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
gi|22219327|pdb|1M1K|D Chain D, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
gi|24159022|pdb|1M90|D Chain D, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
gi|34811119|pdb|1K73|D Chain D, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
gi|34811149|pdb|1KC8|D Chain D, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
gi|34811188|pdb|1N8R|D Chain D, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
gi|34811218|pdb|1NJI|D Chain D, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
gi|37927902|pdb|1Q7Y|D Chain D, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
gi|37927937|pdb|1Q81|D Chain D, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
gi|37927973|pdb|1Q82|D Chain D, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
gi|37928009|pdb|1Q86|D Chain D, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
gi|39654674|pdb|1QVF|B Chain B, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
gi|39654707|pdb|1QVG|B Chain B, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
gi|55670537|pdb|1W2B|B Chain B, Trigger Factor Ribosome Binding Domain In Complex With 50s
gi|145580205|pdb|2OTL|B Chain B, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
gi|228311913|pdb|3CXC|B Chain B, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
gi|228312143|pdb|3G4S|B Chain B, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
gi|228312199|pdb|3G6E|B Chain B, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
gi|228312235|pdb|3G71|B Chain B, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
gi|392311507|pdb|3OW2|B Chain B, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 337
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 4 SRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 61
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 62 REGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR---------- 111
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T + D + +D + +R+I HT
Sbjct: 112 ----TLDVPEDHDPDAAEEQIRDAHEAGDLGD-LRLITHT-------------------- 146
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 147 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMN 191
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 192 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 228
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 156 KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 215
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 216 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 275
Query: 431 IH-TKDG 436
T DG
Sbjct: 276 DEPTVDG 282
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 191 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 250
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 251 VPQQGQTGYHQRTEL---NKRLIDIGEGDEPTVD-----------GGFVNYGEVDGPYTL 296
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 297 VKGSVPGPDKRLVRFR 312
>gi|379003041|ref|YP_005258713.1| 50S ribosomal protein L3 [Pyrobaculum oguniense TE7]
gi|375158494|gb|AFA38106.1| archaeal ribosomal protein L3 [Pyrobaculum oguniense TE7]
Length = 338
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 117/265 (44%), Gaps = 57/265 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR+A +V+ +P + KP L F YKAGM H V DRP
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDANLGKPA-LLGFAAYKAGMLHAVVVDDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHG--LRSFKTVWAEHLSQECRRRFYKNW 159
S + KE+V+AVT+L+ PP+ + G Y P LRS VWA L + R
Sbjct: 63 SPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSR------ 116
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
T K DK K+ ++ R +A + +
Sbjct: 117 ------VLTLPEKVDVDKQMKQV--EEYRDVAVEVRAL--------------------VA 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
QP S + K P+ L+EI + G ++ ++I +A L + +
Sbjct: 149 TQPHLSGIGKKTPE-------------------LLEIPIGGVPNIDERIKFATSLLGKTV 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VF+ +++D I VTKGKG++G
Sbjct: 190 SPKDVFSPGQLVDVIAVTKGKGWQG 214
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 315 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+K L+EI + G ++ ++I +A L + + VF+ +++D I VTKGKG++GV
Sbjct: 158 KKTPELLEIPIGGVPNIDERIKFATSLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVK 217
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
R+ LPR K KG R+ IG P+ + FT R GQ G+H RTE NK++ ++G
Sbjct: 218 RFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIG 273
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ + FT R GQ G+H RTE K L
Sbjct: 221 VTILPRWH------KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEY----NKRL 269
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ +N A ITP GFPHYG + +++I+G G +KR++ LR
Sbjct: 270 LKIGENGAE---------ITPKSGFPHYGVIKGPYILIQGSMPGARKRLVVLR 313
>gi|2425176|dbj|BAA22270.1| ribosomal protein L3 [Halobacterium salinarum]
Length = 330
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 123/275 (44%), Gaps = 61/275 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GSMGF P+KR+ + +P DD V L AF GYKAGMTH+V D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADD--GEVGLQAFAGYKAGMTHVVLVDDKANAPTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E VT+ ETPPM V + Y +TP+G + VWA+ + ++S +
Sbjct: 65 GMETTVPVTV-ETPPMRAVRL--YEDTPYGKKPLTEVWAD------------DTHESLDR 109
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+ +++ D+L + A D ++A IRVI HT +
Sbjct: 110 TLSVPTRRVTDELIE---ALDTEEIAD----IRVITHTVPGD----------------HA 146
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQV 283
V K PD +ME ++ GG++AD++ +A +E G V
Sbjct: 147 GVPKKNPD-------------------VMETRVGGGTLADRLEFAADLIEDGGVHAFGDV 187
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
F E D G+TKGKG +G + + K++ K A
Sbjct: 188 FRAGEFADAAGITKGKGTQGPVKRWGVQKRKGKHA 222
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K +ME ++ GG++AD++ +A +E G VF E D G+TKGKG +G
Sbjct: 150 KKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFADAAGITKGKGTQGPV 209
Query: 373 SRWHTKKLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K + + R++ +G W+PSRV+ TV + GQ GYH RTELNK++ + G
Sbjct: 210 KRWGVQKRKGKHARHVARRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDG 268
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 424 IYRMG-----AGIHTKDGKVSVTSRWHTKKLPRKTHKGL-RKVACIGAWHPSRVQFTVAR 477
++R G AGI G RW +K K + + R++ +G W+PSRV+ TV +
Sbjct: 187 VFRAGEFADAAGITKGKGTQGPVKRWGVQKRKGKHARHVARRIGNLGPWNPSRVRSTVPQ 246
Query: 478 AGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKG 537
GQ GYH RTEL K+ + + + S D GGFP+YGEV+ + ++KG
Sbjct: 247 QGQTGYHQRTEL---NKRLIDINDGDEPSPD-----------GGFPNYGEVDGPYTLVKG 292
Query: 538 CCMGPKKRVITLR 550
GP++R++ R
Sbjct: 293 SVPGPEQRLVRFR 305
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K +ME ++ GG++AD++ +A +E G VF E D G+TKGKG + V
Sbjct: 150 KKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFADAAGITKGKGTQGPV 209
>gi|448578201|ref|ZP_21643636.1| 50S ribosomal protein L3P [Haloferax larsenii JCM 13917]
gi|445726742|gb|ELZ78358.1| 50S ribosomal protein L3P [Haloferax larsenii JCM 13917]
Length = 338
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 120/282 (42%), Gaps = 64/282 (22%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ + ++K +P DD + L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSMGFSPRKRATKEVPRIKSWPSDDGSP--ALQGFAGYKAGMTHVMMVNDEADSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V V Y +T +G++ VWA E R
Sbjct: 63 REGMEEAVPVTVVETPPMRAVAVRAYEQTSYGMKPKTEVWASEFHDELDRVL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQD---LRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHT 218
D + T +D LR+ + +V +RVI HT
Sbjct: 115 ------------DLPAEDTFEEDAEALREAVEAGEVDDLRVITHT--------------- 147
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
V L +KK +ME ++ GGS+ ++ +A + + +
Sbjct: 148 --------------------VPAGLKNVPKKKPDVMETRVGGGSLVERADFALELVGEGG 187
Query: 279 --PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 188 EHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ ++ +A + + + + VF E +D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSLVERADFALELVGEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELNKRLIDLGEG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + G+ G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RADFALELVGEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + + + D
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDEPTVD--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + ++KG GP KR++ R
Sbjct: 283 --GGFVNYGEVDGHYALVKGSLPGPNKRLLRFR 313
>gi|448441449|ref|ZP_21589112.1| 50S ribosomal protein L3P [Halorubrum saccharovorum DSM 1137]
gi|445688858|gb|ELZ41105.1| 50S ribosomal protein L3P [Halorubrum saccharovorum DSM 1137]
Length = 338
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 120/279 (43%), Gaps = 58/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ R +++ +P DD L F GYKAGMTH+V D S
Sbjct: 5 SRPRKGSLGYGPRTRADREVPRIRSWPDDDGAP--ALQGFAGYKAGMTHVVMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G + + VWA +E R
Sbjct: 63 REGMEESVPVTVVETPPMYAVALRAYEQTPYGKKPVEEVWATEFHEELDRALD------- 115
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
A +++ A +LR + V +RVI HT +
Sbjct: 116 ----LPAEDTFEED------ADELRALLDEDAVDDVRVITHTVPSE-------------- 151
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
SNV K +PD +ME ++ GGS+ +++ + + +
Sbjct: 152 --LSNVPKKKPD-------------------IMETRVGGGSLEERVDFGLDLVAEGGAHE 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + D G+TKGKG +G + + K++ K A
Sbjct: 191 FGDVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ +++ + + + G VF + D G+T
Sbjct: 148 VPSELSNVPKKKPDIMETRVGGGSLEERVDFGLDLVAEGGAHEFGDVFRAGQYTDVSGIT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ G G
Sbjct: 268 KRLIDFGEG 276
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + + G H + ++R G +GI G RW +K K
Sbjct: 175 RVDFGLDLVAEGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ D+ +IKG GP KR++ R
Sbjct: 283 ------GGFVNYGEVDGDYALIKGSLPGPDKRLLRFR 313
>gi|222480857|ref|YP_002567094.1| 50S ribosomal protein L3P [Halorubrum lacusprofundi ATCC 49239]
gi|222453759|gb|ACM58024.1| ribosomal protein L3 [Halorubrum lacusprofundi ATCC 49239]
Length = 338
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 118/279 (42%), Gaps = 58/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ R +++ +P DD L F GYKAGMTH+V D S
Sbjct: 5 SRPRKGSLGYGPRTRADREVPRIRSWPDDDGAP--ALQGFAGYKAGMTHVVMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G + + VWA +E R
Sbjct: 63 REGMETSVPVTVVETPPMYAVALRAYEQTPYGKKPVEEVWATEFHEELDRALD------- 115
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
A +++ A +LR + V +RVI HT
Sbjct: 116 ----LPAEDTFEED------ADELRALLDEGAVDDVRVITHT------------------ 147
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
V +L +KK +ME ++ GGS+ +++ + + +
Sbjct: 148 -----------------VPSELANVPKKKPDVMETRVGGGSLEERVDFGLDLVAEGGAHE 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + D G+TKGKG +G + + K++ K A
Sbjct: 191 FGDVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ +++ + + + G VF + D G+T
Sbjct: 148 VPSELANVPKKKPDVMETRVGGGSLEERVDFGLDLVAEGGAHEFGDVFRAGQYTDVSGIT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ G G
Sbjct: 268 KRLIDFGEG 276
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + + G H + ++R G +GI G RW +K K
Sbjct: 175 RVDFGLDLVAEGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++ +IKG GP KR+I R
Sbjct: 283 ------GGFVNYGEVDGEYALIKGSLPGPDKRLIRFR 313
>gi|448460077|ref|ZP_21596997.1| 50S ribosomal protein L3P [Halorubrum lipolyticum DSM 21995]
gi|445807795|gb|EMA57876.1| 50S ribosomal protein L3P [Halorubrum lipolyticum DSM 21995]
Length = 338
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 118/279 (42%), Gaps = 58/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ R +++ +P DD L F GYKAGMTH+V D S
Sbjct: 5 SRPRKGSLGYGPRTRADREVPRIRSWPDDDGAP--ALQGFAGYKAGMTHVVMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G + + VWA +E R
Sbjct: 63 REGMETSVPVTVVETPPMYAVALRAYEQTPYGKKPVEEVWATEFHEELDRALD------- 115
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
A +++ A +LR + V +RVI HT
Sbjct: 116 ----LPAEDTFEED------ADELRALLDEGAVDDVRVITHT------------------ 147
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
V +L +KK +ME ++ GGS+ +++ + + +
Sbjct: 148 -----------------VPSELANVPKKKPDVMETRVGGGSLEERVDFGLDLVAEGGAHE 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + D G+TKGKG +G + + K++ K A
Sbjct: 191 FGDVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ +++ + + + G VF + D G+T
Sbjct: 148 VPSELANVPKKKPDVMETRVGGGSLEERVDFGLDLVAEGGAHEFGDVFRAGQYTDVSGIT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ G G
Sbjct: 268 KRLIDFGEG 276
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + + G H + ++R G +GI G RW +K K
Sbjct: 175 RVDFGLDLVAEGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++ +IKG GP KR++ R
Sbjct: 283 ------GGFVNYGEVDGEYALIKGSLPGPDKRLLRFR 313
>gi|448463230|ref|ZP_21598008.1| 50S ribosomal protein L3P [Halorubrum kocurii JCM 14978]
gi|445817225|gb|EMA67101.1| 50S ribosomal protein L3P [Halorubrum kocurii JCM 14978]
Length = 338
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 118/279 (42%), Gaps = 58/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ R +++ +P DD L F GYKAGMTH+V D S
Sbjct: 5 SRPRKGSLGYGPRTRADREVPRIRSWPDDDGAP--ALQGFAGYKAGMTHVVMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G + + VWA +E R
Sbjct: 63 REGMETSVPVTVVETPPMYAVALRAYEQTPYGKKPVEEVWATEFHEELDRALD------- 115
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
A +++ A +LR + V +RVI HT
Sbjct: 116 ----LPAEDTFEED------ADELRALLDEGAVDDVRVITHT------------------ 147
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
V +L +KK +ME ++ GGS+ +++ + + +
Sbjct: 148 -----------------VPSELANVPKKKPDVMETRVGGGSLEERVDFGLDLVAEGGAHE 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + D G+TKGKG +G + + K++ K A
Sbjct: 191 FGDVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ +++ + + + G VF + D G+T
Sbjct: 148 VPSELANVPKKKPDVMETRVGGGSLEERVDFGLDLVAEGGAHEFGDVFRAGQYTDVSGIT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ G G
Sbjct: 268 KRLIDFGEG 276
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + + G H + ++R G +GI G RW +K K
Sbjct: 175 RVDFGLDLVAEGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ D+ +IKG GP KR++ R
Sbjct: 283 ------GGFVNYGEVDGDYALIKGSLPGPDKRLLRFR 313
>gi|375083294|ref|ZP_09730320.1| 50S ribosomal protein L3P [Thermococcus litoralis DSM 5473]
gi|374742025|gb|EHR78437.1| 50S ribosomal protein L3P [Thermococcus litoralis DSM 5473]
Length = 361
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
L + +KK +ME + G SV +K A+ ++ L + + +V + E++D + VTKGKG +G
Sbjct: 168 LARIKKKPEVMEYAVGGTSVEEKFAYIKERLGKELRASEVLKEGELLDIVAVTKGKGTQG 227
Query: 371 VTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW K K + R V +G WHP+RV +TV +AGQ G+HHRTE NK++ R+G
Sbjct: 228 PVKRWGIKIQFHKAQRAGKARHVGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLLRIG 287
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V +G WHP+RV +TV +AGQ G+HHRTE K+ L I N D E IT
Sbjct: 248 RHVGNLGPWHPARVMWTVPQAGQMGFHHRTEF---NKRLLR--IGENGKLKLDGEEIEIT 302
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGFPHYG V NDFLMI G G KR+I +R
Sbjct: 303 PKGGFPHYGIVRNDFLMIAGTIPGAIKRIIRVR 335
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 53/270 (19%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K S PR GS+ + P+KR+ +++ +P++ + V + F GYKAGMTH++ D PG
Sbjct: 3 KISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTV------WAEHLSQECRRRF 155
KEI VTI+E PP+++ GV Y + GL + V + S++ +
Sbjct: 60 L-TKGKEIFVPVTIVEAPPLIVYGVRAYKQGYLGLETATEVIVPDFKLENYPSKKAKNVT 118
Query: 156 YKNWYKSRQKAFTK--ASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQN 213
+ + R K K + +Q KLG+ +DL K + +V ++A
Sbjct: 119 FYKLLERRIKTLPKNYNEETFQQKLGE---LEDLVKSGEIVEVRALVA------------ 163
Query: 214 QQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 273
TQP L + +KK +ME + G SV +K A+ ++
Sbjct: 164 ----------------TQP----------WLARIKKKPEVMEYAVGGTSVEEKFAYIKER 197
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
L + + +V + E++D + VTKGKG +G
Sbjct: 198 LGKELRASEVLKEGELLDIVAVTKGKGTQG 227
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L + +KK +ME + G SV +K A+ ++ L + + +V + E++D + VTKGKG
Sbjct: 168 LARIKKKPEVMEYAVGGTSVEEKFAYIKERLGKELRASEVLKEGELLDIVAVTKGKG 224
>gi|386001185|ref|YP_005919484.1| 50S ribosomal protein L3P [Methanosaeta harundinacea 6Ac]
gi|357209241|gb|AET63861.1| 50S ribosomal protein L3P [Methanosaeta harundinacea 6Ac]
Length = 297
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K LMEIQ+NGG++A++ A+ L +P+ +F+ +ID +TKGKG +G R
Sbjct: 116 KKNPDLMEIQVNGGNIANQFELAKSLLGSSVPISSIFSPGSIIDVSAITKGKGVQGPVKR 175
Query: 375 WHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA--G 430
W RK +G R + +G W+P V++TV GQ GYH RTE NK++ +G+ G
Sbjct: 176 WGINLQKRKHSRGGKRRHIGNLGPWNPHHVRWTVPLLGQMGYHQRTEFNKRVLAIGSDGG 235
Query: 431 IHTKDG 436
T DG
Sbjct: 236 AITPDG 241
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 53/226 (23%)
Query: 80 LTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSF 139
+ F GYKAGMTHI+ D+P S EI VTILETPP+ I + Y + G+R+
Sbjct: 1 MDGFAGYKAGMTHIIMIDDKPNSLTEGMEISVPVTILETPPLSIAALRVYEKYNGGVRAA 60
Query: 140 KTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRV 199
W++ L R K+++ A D++G I +D+ ++ R+
Sbjct: 61 GEAWSDKLDPSLARSI--TVPKNKRGAAI-------DEIG--AIIEDMEEL-------RL 102
Query: 200 IAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLN 259
IAHT + + + V K PD LMEIQ+N
Sbjct: 103 IAHTNPK----------------LLTGVPKKNPD-------------------LMEIQVN 127
Query: 260 GGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM 305
GG++A++ A+ L +P+ +F+ +ID +TKGKG +G +
Sbjct: 128 GGNIANQFELAKSLLGSSVPISSIFSPGSIIDVSAITKGKGVQGPV 173
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 443 RWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW RK +G R + +G W+P V++TV GQ GYH RTE K+ L++
Sbjct: 175 RWGINLQKRKHSRGGKRRHIGNLGPWNPHHVRWTVPLLGQMGYHQRTEF---NKRVLAIG 231
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
A ITP GGFP YG + ++ ++ G GP KR++ +R
Sbjct: 232 SDGGA----------ITPDGGFPGYGIIRGEYAILSGSVPGPSKRLVRMR 271
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKRQKK-AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R+I KLL KK LMEIQ+NGG++A++ A+ L +P+ +F+ +ID
Sbjct: 101 RLIAHTNPKLLTGVPKKNPDLMEIQVNGGNIANQFELAKSLLGSSVPISSIFSPGSIIDV 160
Query: 604 IGVTKGKGFKECV 616
+TKGKG + V
Sbjct: 161 SAITKGKGVQGPV 173
>gi|27066406|pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 337
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 113/277 (40%), Gaps = 55/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P S
Sbjct: 4 SRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSP 61
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E V VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 62 REGMETV-PVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR---------- 110
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T + D + +D + +R+I HT
Sbjct: 111 ----TLDVPEDHDPDAAEEQIRDAHEAGDLGD-LRLITHT-------------------- 145
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVG 281
V + +KK +ME ++ GGSV+D++ A +E +
Sbjct: 146 ---------------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMN 190
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E D GVTKGKG +G + + K++ K A
Sbjct: 191 DIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHA 227
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV+D++ A +E + +F E D GVTKGKG +G
Sbjct: 155 KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 214
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 215 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 274
Query: 431 IH-TKDG 436
T DG
Sbjct: 275 DEPTVDG 281
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 21/147 (14%)
Query: 422 KKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFT 474
I+R G AG+ G RW +K K +G R+ + +G W+PSRV+ T
Sbjct: 190 NDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRST 249
Query: 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLM 534
V + GQ GYH RTEL K+ + + + + D GGF +YGEV+ + +
Sbjct: 250 VPQQGQTGYHQRTEL---NKRLIDIGEGDEPTVD-----------GGFVNYGEVDGPYTL 295
Query: 535 IKGCCMGPKKRVITLRKMKLLKKRQKK 561
+KG GP KR++ + + Q +
Sbjct: 296 VKGSVPGPDKRLVPFFRPAVRPNDQPR 322
>gi|452206448|ref|YP_007486570.1| 50S ribosomal protein L3 [Natronomonas moolapensis 8.8.11]
gi|452082548|emb|CCQ35806.1| 50S ribosomal protein L3 [Natronomonas moolapensis 8.8.11]
Length = 336
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 120/277 (43%), Gaps = 55/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+ R+A + +P DD +P L F GYKAGM+H+V D P S
Sbjct: 5 SRPRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVTINDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
+E VT++ETPPM V V Y +TP+G R +W + + ++ R +S
Sbjct: 63 REGQEETVPVTVVETPPMRAVAVRAYEDTPYGTRPLTELWTDEVHEDLGRALSVPDEQS- 121
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
A + ++ L +A +RVI HT
Sbjct: 122 ----GGAESQIREALDSGALAD-----------VRVITHTLPSG---------------- 150
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVG 281
S+V K +PD +ME ++ GG++ D++ +A ++
Sbjct: 151 LSSVPKKEPD-------------------VMETRVGGGALGDRLEFAFDLVDDGGEHAAT 191
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
VF + D G+TKGKG +G + + K++ K A
Sbjct: 192 DVFRAGQYADVAGITKGKGTQGPVKRWGVQKRKGKHA 228
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 26/158 (16%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
R++F G H T+ ++R G AGI G RW +K K
Sbjct: 173 DRLEFAFDLVDDGGEHAATD----VFRAGQYADVAGITKGKGTQGPVKRWGVQKRKGKHA 228
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + DL
Sbjct: 229 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLV------------DLG 273
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ +TP GGF +YGEV+ + ++KG GP KR++ R
Sbjct: 274 DDDVTPDGGFVNYGEVDGSYALVKGSVPGPDKRLVRFR 311
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K+ +ME ++ GG++ D++ +A ++ VF + D G+TKGKG +G
Sbjct: 156 KKEPDVMETRVGGGALGDRLEFAFDLVDDGGEHAATDVFRAGQYADVAGITKGKGTQGPV 215
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 216 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDLGDD 275
Query: 431 IHTKDG 436
T DG
Sbjct: 276 DVTPDG 281
>gi|145592242|ref|YP_001154244.1| 50S ribosomal protein L3P [Pyrobaculum arsenaticum DSM 13514]
gi|212288408|sp|A4WMH5.1|RL3_PYRAR RecName: Full=50S ribosomal protein L3P
gi|145284010|gb|ABP51592.1| LSU ribosomal protein L3P [Pyrobaculum arsenaticum DSM 13514]
Length = 338
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 117/265 (44%), Gaps = 57/265 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR+A +V+ +P + KP L F YKAGM H V DRP
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDVNLGKPA-LLGFAAYKAGMLHAVVVDDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHG--LRSFKTVWAEHLSQECRRRFYKNW 159
S + KE+V+AVT+L+ PP+ + G Y P LRS VWA L + R
Sbjct: 63 SPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSR------ 116
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
T K DK K+ ++ R +A + +
Sbjct: 117 ------VLTLPEKVDVDKQMKQV--EEYRDVAVEVRAL--------------------VA 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
QP S + K P+ L+EI + G ++ ++I +A L + +
Sbjct: 149 TQPHLSGIGKKTPE-------------------LLEIPIGGVPNIDERIKFAISLLGKTV 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VF+ +++D I VTKGKG++G
Sbjct: 190 SPKDVFSPGQLVDVIAVTKGKGWQG 214
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 315 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+K L+EI + G ++ ++I +A L + + VF+ +++D I VTKGKG++GV
Sbjct: 158 KKTPELLEIPIGGVPNIDERIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVK 217
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
R+ LPR K KG R+ IG P+ + FT R GQ G+H RTE NK++ ++G
Sbjct: 218 RFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIG 273
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ + FT R GQ G+H RTE K L
Sbjct: 221 VTILPRWH------KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEY----NKRL 269
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ +N A ITP GFPHYG + +++I+G G +KR++ LR
Sbjct: 270 LKIGENGAE---------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313
>gi|300710375|ref|YP_003736189.1| 50S ribosomal protein L3P [Halalkalicoccus jeotgali B3]
gi|448294699|ref|ZP_21484778.1| 50S ribosomal protein L3P [Halalkalicoccus jeotgali B3]
gi|299124058|gb|ADJ14397.1| 50S ribosomal protein L3P [Halalkalicoccus jeotgali B3]
gi|445586376|gb|ELY40658.1| 50S ribosomal protein L3P [Halalkalicoccus jeotgali B3]
Length = 337
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 120/279 (43%), Gaps = 59/279 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+ R+ + +P DD +P L F GYKAGM+H+V D S
Sbjct: 5 SRPRKGSLGFGPRTRATSEVPRFNSWPDDD-GQPA-LQGFAGYKAGMSHVVMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
+ E VTI+ETPPM V + Y +T +G++ VWAE E R
Sbjct: 63 LEGTEQTVPVTIVETPPMRAVALRAYEQTAYGMQPRGEVWAEEFDDELDRAL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
++A +D DL + KV +RVI HT
Sbjct: 115 -DLPSEADPSARD---------DLETALEEGKVDDLRVITHT------------------ 146
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--P 279
S ++ + K KK +ME ++ GGS+A++ +A L++
Sbjct: 147 ---------------SPASLRGVPK--KKPDVMETRVGGGSLAERAEFAFGLLDEGGEHE 189
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 ATDVFRAGEYLDVSGVTKGKGTQGPVKRWGVQKRKGKHA 228
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+A++ +A L++ VF E +D GVTKGKG +G
Sbjct: 156 KKKPDVMETRVGGGSLAERAEFAFGLLDEGGEHEATDVFRAGEYLDVSGVTKGKGTQGPV 215
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 216 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLLALG 273
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
R +F + G H T+ ++R G +G+ G RW +K K
Sbjct: 174 RAEFAFGLLDEGGEHEATD----VFRAGEYLDVSGVTKGKGTQGPVKRWGVQKRKGKHAR 229
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ L++ E
Sbjct: 230 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLLALG-----------EE 275
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ P GG +YGEV+ + +IKG GP KRV+ R
Sbjct: 276 DDVNPDGGLVNYGEVSGPYTLIKGSLPGPDKRVLRFR 312
>gi|149498722|ref|XP_001519230.1| PREDICTED: 60S ribosomal protein L3-like, partial [Ornithorhynchus
anatinus]
Length = 62
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 53/62 (85%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
M++L RQKK+HLMEIQ+NGGS+A+K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 1 MRVLPLRQKKSHLMEIQVNGGSIAEKVDWAREKLEQQVPVATVFGQDEMIDVIGVTKGKG 60
Query: 301 FK 302
+K
Sbjct: 61 YK 62
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 53/62 (85%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M++L RQKK+HLMEIQ+NGGS+A+K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 1 MRVLPLRQKKSHLMEIQVNGGSIAEKVDWAREKLEQQVPVATVFGQDEMIDVIGVTKGKG 60
Query: 368 FK 369
+K
Sbjct: 61 YK 62
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 53/62 (85%)
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
M++L RQKK+HLMEIQ+NGGS+A+K+ WAR+ LEQ +PV VF QDEMID IGVTKGKG
Sbjct: 1 MRVLPLRQKKSHLMEIQVNGGSIAEKVDWAREKLEQQVPVATVFGQDEMIDVIGVTKGKG 60
Query: 612 FK 613
+K
Sbjct: 61 YK 62
>gi|402873252|ref|XP_003900497.1| PREDICTED: ribosomal protein L3-like [Papio anubis]
Length = 201
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 56/70 (80%)
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+IKNNASTDYDL+EKSI P+GGF HYGEV NDF+M+KGC +G KKRV+TLRK L++ +
Sbjct: 78 LIKNNASTDYDLSEKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQMKW 137
Query: 560 KKAHLMEIQL 569
+ M+++
Sbjct: 138 QALEKMDLKF 147
>gi|261403779|ref|YP_003248003.1| 50S ribosomal protein L3P [Methanocaldococcus vulcanius M7]
gi|261370772|gb|ACX73521.1| ribosomal protein L3 [Methanocaldococcus vulcanius M7]
Length = 335
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 58/264 (21%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
+ PR GS+ F P+KR+ R +++ +P ++ V L AF YKAGM+H + D S
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPDEEA---VRLQAFPVYKAGMSHAFIKEDNQKS 61
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYKNWYK 161
+E+ +TILE PP+ + + Y L + VWA++L +E R+ N K
Sbjct: 62 PKAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI--NLPK 119
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ +KT+ DL + + +RV+ HT + L
Sbjct: 120 KEE---------------RKTV-DDLEAIKDKIEDVRVLVHTNPKLTCLP---------- 153
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+KK ++EI++ G + +++ +A++ L + + +
Sbjct: 154 --------------------------KKKPEILEIRIGGKDIEERLNYAKEILGKQLNIT 187
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF + E+ D IG+TKGKGF+G++
Sbjct: 188 DVFQEGELADTIGITKGKGFQGQV 211
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G + +++ +A++ L + + + VF + E+ D IG+TKGKGF+G R
Sbjct: 154 KKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELADTIGITKGKGFQGQVKR 213
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + KG+ R V IG W P + +TV GQ GYH RTE NK+I ++G
Sbjct: 214 WGVKIQFGKHARKGVGRHVGSIGPWQPKMIMWTVPMPGQMGYHQRTEYNKRILKIG 269
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 430 GIHTKDGKVSVTSRWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
GI G RW K + + KG+ R V IG W P + +TV GQ GYH RT
Sbjct: 200 GITKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMIMWTVPMPGQMGYHQRT 259
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
E K+ L I NN + ITP GGF HYG + N+++++KG GP KR+I
Sbjct: 260 EY---NKRILK--IGNNG--------EEITPKGGFLHYGVIKNNYVVLKGSVQGPAKRLI 306
Query: 548 TLRK 551
LR+
Sbjct: 307 VLRR 310
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ KL +KK ++EI++ G + +++ +A++ L + + + VF + E+ D I
Sbjct: 140 RVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELADTI 199
Query: 605 GVTKGKGFK 613
G+TKGKGF+
Sbjct: 200 GITKGKGFQ 208
>gi|154343495|ref|XP_001567693.1| putative ribosomal protein L3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065025|emb|CAM43137.1| putative ribosomal protein L3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 154
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 59/83 (71%), Gaps = 6/83 (7%)
Query: 473 FTVARAGQKGYHHRTELFLCKKKY----LSMVIKNNASTDYDLTEKSITPMGGFPHYGEV 528
+TVARAGQ GYHHRT+L KK Y V N A+T YDLT K+ITPMGGF YG V
Sbjct: 2 YTVARAGQHGYHHRTQL--NKKIYQIGRTVAVEPNQATTTYDLTAKTITPMGGFVGYGTV 59
Query: 529 NNDFLMIKGCCMGPKKRVITLRK 551
ND++M+KG GP++RV+TLR+
Sbjct: 60 RNDYVMLKGSVSGPRRRVMTLRR 82
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 404 FTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVT 441
+TVARAGQ GYHHRT+LNKKIY++G + + + + T
Sbjct: 2 YTVARAGQHGYHHRTQLNKKIYQIGRTVAVEPNQATTT 39
>gi|448386089|ref|ZP_21564297.1| 50S ribosomal protein L3P [Haloterrigena thermotolerans DSM 11522]
gi|445655987|gb|ELZ08829.1| 50S ribosomal protein L3P [Haloterrigena thermotolerans DSM 11522]
Length = 339
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 116/284 (40%), Gaps = 67/284 (23%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ PR GS+GF P+KR+ + +P D PT L F GYKAGMTH+V D+
Sbjct: 5 NTPRKGSLGFGPRKRATSEVPRFNSWPDTDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPITEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D +LR + +V +RVI HT
Sbjct: 115 ----------DIPGDDYDVDAAEDELRGLLSEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V ++ +KK +ME ++ GGSV +++ +A LE
Sbjct: 149 -------------------VPTEIPSVPKKKPDVMETRVGGGSVEERVDFA---LETVAD 186
Query: 280 VGQ-----VFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 187 GGEHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 11/130 (8%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ-----VFAQDEMIDCIGVTKGKGFK 369
+KK +ME ++ GGSV +++ +A LE G+ VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEERVDFA---LETVADGGEHVMNDVFRAGEYVDASGVTKGKGTQ 214
Query: 370 GVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +
Sbjct: 215 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDI 274
Query: 428 GAGIH-TKDG 436
G G T DG
Sbjct: 275 GEGADATVDG 284
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFALETVADGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGEGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPQQRLVRFR 314
>gi|41615218|ref|NP_963716.1| 50S ribosomal protein L3P [Nanoarchaeum equitans Kin4-M]
gi|42559579|sp|P60458.1|RL3_NANEQ RecName: Full=50S ribosomal protein L3P
gi|40068942|gb|AAR39277.1| NEQ433 [Nanoarchaeum equitans Kin4-M]
Length = 321
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 73/126 (57%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +K + +I + G V K+ +A L + + + VF + + +D I VTKGKGF+GV
Sbjct: 145 KLKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVI 204
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIH 432
R+H + K+ KG+RKV IG+ P R+ TV GQ GYH RTE NK I ++G ++
Sbjct: 205 KRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLN 264
Query: 433 TKDGKV 438
+ G V
Sbjct: 265 VEGGWV 270
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 72/263 (27%)
Query: 45 APRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKI 104
APR GSMGF+P+KR++R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK----NWY 160
N + + VT+LE P ++++G Y + L+ +++ L Q R+ K N+
Sbjct: 58 NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPKLKNYNFE 117
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
+ +++ +KA +++I TQ + L
Sbjct: 118 EKKEQFLSKADN---------------------ADEVKIIVSTQPWKIKL---------- 146
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
+K + +I + G V K+ +A L + + +
Sbjct: 147 ---------------------------KKTPEIFDIPIGGSDVNKKLEYALSLLGKELSI 179
Query: 281 GQVFAQDEMIDCIGVTKGKGFKG 303
VF + + +D I VTKGKGF+G
Sbjct: 180 NDVFKEGQYVDVIAVTKGKGFQG 202
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V R+H + K+ KG+RKV IG+ P R+ TV GQ GYH RTE Y +
Sbjct: 203 VIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTE-------YNKL 255
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+IK + + GG+ YG+V +++KG GP+KR+I LR+ ++Q
Sbjct: 256 IIKIGEPLNVE---------GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQ 306
Query: 560 KKAHLME 566
+K +E
Sbjct: 307 EKVEGIE 313
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
K +K + +I + G V K+ +A L + + + VF + + +D I VTKGKGF+ +
Sbjct: 145 KLKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVI 204
>gi|448592779|ref|ZP_21651826.1| 50S ribosomal protein L3P [Haloferax elongans ATCC BAA-1513]
gi|445730805|gb|ELZ82392.1| 50S ribosomal protein L3P [Haloferax elongans ATCC BAA-1513]
Length = 338
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 120/282 (42%), Gaps = 64/282 (22%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ + ++K +P DD + L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSMGFSPRKRATKEVPRIKSWPSDDGSP--ALQGFAGYKAGMTHVMMVNDEADSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM + + Y +T +G++ VWA E R
Sbjct: 63 REGMEEAVPVTVVETPPMRAIALRAYEQTSYGMKPKTEVWASEFHDELDRVL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQD---LRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHT 218
D + T +D LR+ + +V +RVI HT
Sbjct: 115 ------------DLPAEDTFEEDAEALREAVEAGEVDDLRVITHT--------------- 147
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
V L +KK +ME ++ GGS+ ++ +A + + +
Sbjct: 148 --------------------VPAGLKNVPKKKPDVMETRVGGGSLVERADFALELVGEGG 187
Query: 279 --PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 188 EHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ ++ +A + + + + VF E +D GVTKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSLVERADFALELVGEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELNKRLIDLGEG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + G+ G H +++ + Y AG+ G RW +K K +G R
Sbjct: 175 RADFALELVGEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + + + D
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDEPTVD--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + ++KG GP KR++ R
Sbjct: 283 --GGFVNYGEVDGHYALVKGSLPGPNKRLLRFR 313
>gi|20093853|ref|NP_613700.1| 50S ribosomal protein L3P [Methanopyrus kandleri AV19]
gi|42559662|sp|Q8TY90.1|RL3_METKA RecName: Full=50S ribosomal protein L3P
gi|19886782|gb|AAM01630.1| Ribosomal protein L3 [Methanopyrus kandleri AV19]
Length = 361
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 124/285 (43%), Gaps = 70/285 (24%)
Query: 50 SMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEI 109
S+ F P+KR++R +++ +P ++ V + F GYKAGMTH + D P S +EI
Sbjct: 16 SLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEI 72
Query: 110 VEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTK 169
VTIL+ PPM + + Y TP G R WAE + +E + FT
Sbjct: 73 SVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE-IPEEL----------EMDRVFT- 120
Query: 170 ASKKWQDKLGKKTIAQDLRKMAKY-----CKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
+ K A DL K+ + + IRVI T QP +
Sbjct: 121 --------VPKDGEAGDLDKIEELVDEGIVEEIRVIVAT-----------------QPKK 155
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
+ V K +PD +ME ++ G V ++ +A + L + I VF
Sbjct: 156 AGVPKKKPD-------------------VMEYRIGGKDVRERFEYAVEILSEEIRAKDVF 196
Query: 285 AQDEMIDCIGVTKGKGFKGEM------IAMKLLKKRQKKAHLMEI 323
+ E++D +TKGKGF+G + I + +++QK H+ I
Sbjct: 197 DEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSI 241
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK +ME ++ G V ++ +A + L + I VF + E++D +TKGKGF+GV R
Sbjct: 160 KKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKR 219
Query: 375 WHTKKLPRKT---HKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RKT KG R + IG PSRV++TV AGQ GYH RTE NK+I ++G
Sbjct: 220 WGVTIQDRKTQRKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIG 275
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 440 VTSRWHTKKLPRKTH---KGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY 496
V RW RKT KG R + IG PSRV++TV AGQ GYH RTE K+
Sbjct: 216 VVKRWGVTIQDRKTQRKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTE---HNKRI 271
Query: 497 LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L I + + +TP GGF +YG V D++MI G GPKKR+I +R
Sbjct: 272 LK--IGEDG--------EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVR 315
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI + K +KK +ME ++ G V ++ +A + L + I VF + E++D
Sbjct: 146 RVIVATQPKKAGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVS 205
Query: 605 GVTKGKGFKECV 616
+TKGKGF+ V
Sbjct: 206 AITKGKGFQGVV 217
>gi|429216878|ref|YP_007174868.1| 50S ribosomal protein L3 [Caldisphaera lagunensis DSM 15908]
gi|429133407|gb|AFZ70419.1| archaeal ribosomal protein L3 [Caldisphaera lagunensis DSM 15908]
Length = 345
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 124/268 (46%), Gaps = 57/268 (21%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK SA R GS+GFYP++R+ ++K +P +P L FIGYK GMTH+ +R
Sbjct: 3 HRKKSAARRGSLGFYPRQRAVEFVPRIKSWPTLSIQEP-KLLGFIGYKVGMTHVFIIENR 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYV-ETPHGLRSFKTVWAEHLSQ-ECRRRFYK 157
G KE++ VTI+ETPP+ ++ V GY + GL W++ + E RR
Sbjct: 62 QGLPTYGKEVMRPVTIVETPPVYVLAVRGYAFDLNKGLYPLTEAWSKIPNDLELERRI-- 119
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
+ + T+ S K +L+K A K IRV+ +Q +
Sbjct: 120 ---STLGEFDTEGSIK------------ELQKSANELKEIRVLIASQPK----------- 153
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGS--VADKIAWARQHLE 275
+ ++K +PD ++E+++N S V + +A L
Sbjct: 154 -----LTGGLSKKKPD-------------------VIEVKVNAPSNDVKKALDFAINKLG 189
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
Q + V VF ++ID + V+KGKG++G
Sbjct: 190 QQVTVKDVFQPGQVIDVLAVSKGKGWQG 217
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 18/124 (14%)
Query: 315 QKKAHLMEIQLNGGS--VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK ++E+++N S V + +A L Q + V VF ++ID + V+KGKG++GV
Sbjct: 160 KKKPDVIEVKVNAPSNDVKKALDFAINKLGQQVTVKDVFQPGQVIDVLAVSKGKGWQGVI 219
Query: 373 SRWHTKKLPRKT--HKGLRKVAC----IGAW--HPSRVQFTVARAGQKGYHHRTELNKKI 424
R K+LPR T KG RK+ +G W +PS GQ G+H RT+ NK+I
Sbjct: 220 KRAGAKQLPRWTKHRKGSRKIGARSHGLGTWWENPS--------PGQLGFHRRTDYNKRI 271
Query: 425 YRMG 428
+G
Sbjct: 272 LDIG 275
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
Query: 440 VTSRWHTKKLPRKT--HKGLRKVAC----IGAW--HPSRVQFTVARAGQKGYHHRTELFL 491
V R K+LPR T KG RK+ +G W +PS GQ G+H RT+
Sbjct: 218 VIKRAGAKQLPRWTKHRKGSRKIGARSHGLGTWWENPS--------PGQLGFHRRTDY-- 267
Query: 492 CKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
N D +TP GGF +YG V + ++M++G G KR I LR
Sbjct: 268 -----------NKRILDIGDEGYKVTPAGGFINYGIVKSSYIMLEGSIPGVVKRPIVLR 315
>gi|448298465|ref|ZP_21488494.1| 50S ribosomal protein L3P [Natronorubrum tibetense GA33]
gi|445591661|gb|ELY45862.1| 50S ribosomal protein L3P [Natronorubrum tibetense GA33]
Length = 339
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 116/284 (40%), Gaps = 67/284 (23%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
++PR GS+GF P++R+ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NSPRKGSLGFGPRQRATSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y TP+G++ VW + E R
Sbjct: 61 SPTEGMEQTVPVTIVETPPMRAVALRAYEATPYGMKPVTEVWTDEFVTELDRVLDVPGDD 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
A LR + +V +RVI HT
Sbjct: 121 YDADAAEDE----------------LRGYLEEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V + +KK +ME ++ GGSV D++ +A LE
Sbjct: 149 -------------------VPGSIPSMPKKKPDVMETRVGGGSVEDRVDFA---LETVAD 186
Query: 280 VGQ-----VFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 187 GGEHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 11/130 (8%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ-----VFAQDEMIDCIGVTKGKGFK 369
+KK +ME ++ GGSV D++ +A LE G+ VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSVEDRVDFA---LETVADGGEHVMNDVFRAGEYVDASGVTKGKGTQ 214
Query: 370 GVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +
Sbjct: 215 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDI 274
Query: 428 GAGIH-TKDG 436
G G T DG
Sbjct: 275 GDGADATVDG 284
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 175 DRVDFALETVADGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 231 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD---- 283
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP KR++ R
Sbjct: 284 -------GGFVNYGEVDGPHALIKGSLPGPNKRLVRFR 314
>gi|374325726|ref|YP_005083926.1| 50S ribosomal protein L3P [Pyrobaculum sp. 1860]
gi|356640995|gb|AET31674.1| 50S ribosomal protein L3P [Pyrobaculum sp. 1860]
Length = 338
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 53/263 (20%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR+A +V+ +P + +P L F YKAGM H V DRP
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRNWPDVNLGRPT-LLGFAAYKAGMVHAVVVDDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S + KE+V AVT+L+ PP+ + GV Y P ++ AE S E + ++
Sbjct: 63 SPLYGKEVVRAVTVLDAPPLYVWGVRLYTLDPAN--GYRRAVAEVWSAELPKYLHRVLTL 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ K KK ++ + +A D+R + Q
Sbjct: 121 PEKVDVEKQMKKLEE---FRDVAVDVRALVAM---------------------------Q 150
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPV 280
P S + K P+ L+EI + G S+ ++I +A L + +
Sbjct: 151 PHLSGIGKKTPE-------------------LLEIPVGGVPSIDERIKYAVSLLGKTVSP 191
Query: 281 GQVFAQDEMIDCIGVTKGKGFKG 303
VF +++D I VTKGKG++G
Sbjct: 192 KDVFTAGQLVDVIAVTKGKGYQG 214
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 315 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+K L+EI + G S+ ++I +A L + + VF +++D I VTKGKG++GV
Sbjct: 158 KKTPELLEIPVGGVPSIDERIKYAVSLLGKTVSPKDVFTAGQLVDVIAVTKGKGYQGVVK 217
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM---G 428
R+ LPR K KG R+ IG P+ + FT R GQ G+H RTE NK++ ++ G
Sbjct: 218 RFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENG 276
Query: 429 AGIHTKDG 436
A I K G
Sbjct: 277 AEITPKSG 284
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ + FT R GQ G+H RTE K L
Sbjct: 221 VTILPRWH------KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEY----NKRL 269
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ +N A ITP GF HYG V +++++G G +KR++ LR
Sbjct: 270 LKIGENGAE---------ITPKSGFLHYGVVKGPYILVQGSVPGARKRLVVLR 313
>gi|448475310|ref|ZP_21603028.1| 50S ribosomal protein L3P [Halorubrum aidingense JCM 13560]
gi|445816781|gb|EMA66668.1| 50S ribosomal protein L3P [Halorubrum aidingense JCM 13560]
Length = 338
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 58/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ R +++ +P DD L F GYKAGMTH+V D S
Sbjct: 5 SRPRKGSLGYGPRTRADREVPRIRSWPDDDGAP--ALQGFAGYKAGMTHVVMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G++ + VWA +E R
Sbjct: 63 REGMEESVPVTVVETPPMYAVALRAYEQTPYGMKPVEEVWATEFHEELDRALD------- 115
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKM--AKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
A +++ A++LR + +RVI HT +
Sbjct: 116 ----LPAEDTFEED------AEELRALLDDDVVDDVRVITHTVPSE-------------- 151
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
+NV K +PD +ME ++ GGS +++ + + +
Sbjct: 152 --LANVPKKKPD-------------------VMETRVGGGSFEERVDFGLDLVAEGGAHE 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + D G+TKGKG +G + + K++ K A
Sbjct: 191 FGDVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS +++ + + + G VF + D G+T
Sbjct: 148 VPSELANVPKKKPDVMETRVGGGSFEERVDFGLDLVAEGGAHEFGDVFRAGQYTDVSGIT 207
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 208 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 267
Query: 422 KKIYRMGAG 430
K++ G G
Sbjct: 268 KRLIDFGEG 276
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + + G H + ++R G +GI G RW +K K
Sbjct: 175 RVDFGLDLVAEGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++ +IKG GP KR++ R
Sbjct: 283 ------GGFVNYGEVDGEYALIKGSLPGPDKRLLRFR 313
>gi|383625045|ref|ZP_09949451.1| 50S ribosomal protein L3P [Halobiforma lacisalsi AJ5]
gi|448697501|ref|ZP_21698541.1| 50S ribosomal protein L3P [Halobiforma lacisalsi AJ5]
gi|445781454|gb|EMA32310.1| 50S ribosomal protein L3P [Halobiforma lacisalsi AJ5]
Length = 339
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 118/281 (41%), Gaps = 61/281 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P+KR++ + +P D PT L F GYKAGMTH+V D+
Sbjct: 5 NAPRKGSLGFGPRKRASSEVPRFNSWPDTDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G+ VW + + E R
Sbjct: 61 SPTEGMEQTVPVTIVETPPMRAVALRAYEDTPYGMNPVTEVWTDEFAPELDRVLDLPGDD 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
A A +LR + + +V +R I HT
Sbjct: 121 YDSDA----------------AADELRGLLENGRVDDVRAITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V ++ +KK +ME ++ GGSV +++ + + L
Sbjct: 149 -------------------VPSEVPSVPKKKPDVMETRIGGGSVDERVDFGLELLGDGGE 189
Query: 280 --VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 190 HVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV +++ + + L + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRIGGGSVDERVDFGLELLGDGGEHVMNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ MG G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDMGEG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFGLELLGDGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + M +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDMGEGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP+KR++ R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPEKRLVRFR 314
>gi|433590194|ref|YP_007279690.1| archaeal ribosomal protein L3 [Natrinema pellirubrum DSM 15624]
gi|448332400|ref|ZP_21521644.1| 50S ribosomal protein L3P [Natrinema pellirubrum DSM 15624]
gi|433304974|gb|AGB30786.1| archaeal ribosomal protein L3 [Natrinema pellirubrum DSM 15624]
gi|445627504|gb|ELY80828.1| 50S ribosomal protein L3P [Natrinema pellirubrum DSM 15624]
Length = 339
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 116/284 (40%), Gaps = 67/284 (23%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ PR GS+GF P+KR+ + +P D PT L F GYKAGMTH+V D+
Sbjct: 5 NTPRKGSLGFGPRKRATSEVPRFNSWPDTDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPITEVWTDEFVPELDRVL------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTK 219
D +LR + +V +RVI HT
Sbjct: 115 ----------DIPGDDYDVDAAEDELRGLLAEGRVDDVRVITHT---------------- 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
V ++ +KK +ME ++ GGS+ +++ +A LE
Sbjct: 149 -------------------VPTEIPSVPKKKPDVMETRVGGGSIEERVDFA---LETVAD 186
Query: 280 VGQ-----VFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 187 GGEHVMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 11/130 (8%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ-----VFAQDEMIDCIGVTKGKGFK 369
+KK +ME ++ GGS+ +++ +A LE G+ VF E +D GVTKGKG +
Sbjct: 158 KKKPDVMETRVGGGSIEERVDFA---LETVADGGEHVMNDVFRAGEYVDASGVTKGKGTQ 214
Query: 370 GVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +
Sbjct: 215 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDI 274
Query: 428 GAGIH-TKDG 436
G G T DG
Sbjct: 275 GEGADATVDG 284
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFALETVADGGEH----VMNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGEGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP++R++ R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPQQRLVRFR 314
>gi|448315112|ref|ZP_21504765.1| 50S ribosomal protein L3P [Natronococcus jeotgali DSM 18795]
gi|445612371|gb|ELY66097.1| 50S ribosomal protein L3P [Natronococcus jeotgali DSM 18795]
Length = 339
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 117/279 (41%), Gaps = 57/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
++PR GS+GF P++R++ + +P DD PT L F GYKAGMTH+V D+
Sbjct: 5 NSPRKGSLGFGPRQRASSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDKAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW + E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPLTEVWTDEFVPELDRVLD---LP 117
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
A + + L IA +RVI HT
Sbjct: 118 GDDYDADAAEDELRGYLEDGRIAD-----------VRVITHT------------------ 148
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
V ++ +KK +ME ++ GGSV +++ +A + L
Sbjct: 149 -----------------VPSEVPSIPKKKPDVMETRVGGGSVEERLEFALEVLADGGEHV 191
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 192 LNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV +++ +A + L + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVEERLEFALEVLADGGEHVLNDVFRAGEYVDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGDG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
R++F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RLEFALEVLADGGEH----VLNDVFRAGEYVDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP KR++ R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPDKRLLRFR 314
>gi|161528317|ref|YP_001582143.1| 50S ribosomal protein L3P [Nitrosopumilus maritimus SCM1]
gi|160339618|gb|ABX12705.1| ribosomal protein L3 [Nitrosopumilus maritimus SCM1]
Length = 331
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKK ++ E ++GG + + A ++ L + I + Q+F +D +TKGKG++GV R
Sbjct: 155 QKKPYIFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKR 214
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W+ KK K+ K +R+V +G P V +TV RAGQ G+H R E +K+I MG +T
Sbjct: 215 WNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG---NTD 271
Query: 435 DGKVSVT 441
D K+ +
Sbjct: 272 DDKLKIN 278
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 56/276 (20%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK +PR GS+ + P+ R+ +++ +PK D +P + A G+KAG IV DR
Sbjct: 4 RKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDRE 62
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWY 160
K++V T+L TPP++I+G+ GY + GL + V+AE +
Sbjct: 63 KVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIP------------ 110
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
K+IA++ I+ Q+ +L ++S K
Sbjct: 111 --------------------KSIAKE-------------ISLKNKQENALDNAEKSLKKI 137
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
+ I + V + QKK ++ E ++GG + + A ++ L + I +
Sbjct: 138 KEIFAIV----------AISPSAAGLEQKKPYIFEASVSGGDIPKQFAHVKELLGKEIKI 187
Query: 281 GQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
Q+F +D +TKGKG++G + + KK+ K
Sbjct: 188 DQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHK 223
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 11/140 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
A I G V RW+ KK K+ K +R+V +G P V +TV RAGQ G+H R E
Sbjct: 200 AAITKGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVE 259
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
K+ + M +TD D + I P GGF H+G V DF+++KG G +R+I
Sbjct: 260 Y---DKRIMIM-----GNTDDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIK 309
Query: 549 LR-KMKLLKKRQKKAHLMEI 567
LR +++ + + K +++E+
Sbjct: 310 LRSQIRNVPDKVNKPNILEV 329
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
QKK ++ E ++GG + + A ++ L + I + Q+F +D +TKGKG++
Sbjct: 155 QKKPYIFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQ 209
>gi|409731024|ref|ZP_11272574.1| 50S ribosomal protein L3P [Halococcus hamelinensis 100A6]
gi|448724782|ref|ZP_21707287.1| 50S ribosomal protein L3P [Halococcus hamelinensis 100A6]
gi|445784991|gb|EMA35787.1| 50S ribosomal protein L3P [Halococcus hamelinensis 100A6]
Length = 336
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 114/280 (40%), Gaps = 67/280 (23%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GSMG+ P+KR++ + +P DD +P L F GYKAGM+H+V D S
Sbjct: 7 PRKGSMGYSPRKRASSEVARFGSWPDDD-GQP-GLQGFAGYKAGMSHVVMIDDAANSPRE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E VT++ETPPM V + Y +TP+GLR W + + R +S +
Sbjct: 65 GMEQTVPVTVVETPPMRAVALRAYEQTPYGLRPLTETWTDEFHADLDRALDVPDGESDPE 124
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
AF +A + IR I HT +
Sbjct: 125 AFEEAVQDGD------------------VSEIRAITHTVPGG----------------MA 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVA-------DKIAWARQHLEQPI 278
N+ K +PD +ME ++ GG V D IA +H
Sbjct: 151 NIPKKKPD-------------------VMETRIGGGDVTERVEFGLDLIAGGGEHN---- 187
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ +VF E +D GVTKGKG +G + + K++ K A
Sbjct: 188 -MTEVFRPGEYMDAAGVTKGKGTQGPVKRWGVQKRKGKHA 226
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 14/125 (11%)
Query: 315 QKKAHLMEIQLNGGSVA-------DKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
+KK +ME ++ GG V D IA +H + +VF E +D GVTKGKG
Sbjct: 154 KKKPDVMETRIGGGDVTERVEFGLDLIAGGGEHN-----MTEVFRPGEYMDAAGVTKGKG 208
Query: 368 FKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++
Sbjct: 209 TQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQMGYHQRTELNKRLV 268
Query: 426 RMGAG 430
+G G
Sbjct: 269 SVGDG 273
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
RV+F + G H+ TE+ + Y AG+ G RW +K K +G R
Sbjct: 172 RVEFGLDLIAGGGEHNMTEVFRPGEYMDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 231
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ +S+ ++AS +
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQMGYHQRTEL---NKRLVSVGDGDDASAE--------- 279
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF YGEV+ + ++KG GP +R++ R
Sbjct: 280 --GGFVGYGEVDGPYALVKGSLPGPDQRLVRFR 310
>gi|119719148|ref|YP_919643.1| 50S ribosomal protein L3P [Thermofilum pendens Hrk 5]
gi|119524268|gb|ABL77640.1| LSU ribosomal protein L3P [Thermofilum pendens Hrk 5]
Length = 334
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 146/383 (38%), Gaps = 123/383 (32%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS +YP+KR+ +V+ +P++ F GYK GM H++ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E A T++E PP+ +V V Y +TP+G ++ VWA+ L ++ R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
K +++L K L ++ +RV+A TQ + L
Sbjct: 113 PLPKDQSYHEEQLKK------LEEVKSRVSEVRVLAATQPRLSGLG-------------- 152
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+KK L+EI + GG ++ A + L + + + VF
Sbjct: 153 ----------------------KKKPELIEIAV-GGPPEKALSLALEKLGKDLTISDVFK 189
Query: 286 QDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 345
+ + ID I VTKGKGF+G + KR
Sbjct: 190 EGDYIDVIAVTKGKGFQGSV-------KR------------------------------- 211
Query: 346 PVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFT 405
F +EM RWH K KG ++ +G P+ + F
Sbjct: 212 -----FGVEEM----------------PRWH------KHRKGHSRIGSVGPQKPA-IMFY 243
Query: 406 VARAGQKGYHHRTELNKKIYRMG 428
GQ G+H RTE NK+I ++G
Sbjct: 244 TPFPGQLGFHQRTEYNKRILKVG 266
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V RWH K KG ++ +G P+ + F GQ G+H RTE Y
Sbjct: 214 VEEMPRWH------KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTE-------YN 259
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
++K + K I P GG+PHYG V + F++++G G KR++ LR
Sbjct: 260 KRILKVGDAESL----KEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLR 308
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ + +L +KK L+EI + GG ++ A + L + + + VF + + ID I
Sbjct: 139 RVLAATQPRLSGLGKKKPELIEIAV-GGPPEKALSLALEKLGKDLTISDVFKEGDYIDVI 197
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ V
Sbjct: 198 AVTKGKGFQGSV 209
>gi|448411357|ref|ZP_21575822.1| 50S ribosomal protein L3P [Halosimplex carlsbadense 2-9-1]
gi|445670545|gb|ELZ23144.1| 50S ribosomal protein L3P [Halosimplex carlsbadense 2-9-1]
Length = 349
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 115/275 (41%), Gaps = 54/275 (19%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+GF P+ R+A + +P DD +P L F GYKAGMTH+V D P S
Sbjct: 7 PRKGSLGFGPRTRAASETPRFNSWPDDD-GQP-GLQGFAGYKAGMTHVVLINDEPDSPRE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E VT++ETPP+ V + Y +TP+G R VWA+ E R
Sbjct: 65 GMEETVPVTVIETPPLRAVALRAYEDTPYGQRPLTEVWADEFHGELDRTLDVPEDHDADA 124
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
A ++++ + A DL +RVI HT
Sbjct: 125 A--------EEQIRQAHEAGDLGD-------VRVITHT---------------------- 147
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQV 283
V + +KK +ME ++ GGS++D++ + + + + V
Sbjct: 148 -------------VPTDIAGVPRKKPEVMETRVGGGSLSDRLDFGLDLVAEGGEHSMTDV 194
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
F E D VTKGKG +G + + K++ K A
Sbjct: 195 FRAGEYADVAAVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS++D++ + + + + VF E D VTKGKG +G
Sbjct: 157 RKKPEVMETRVGGGSLSDRLDFGLDLVAEGGEHSMTDVFRAGEYADVAAVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 276
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
R+ F + + G H T+ ++R G A + G RW +K K
Sbjct: 174 DRLDFGLDLVAEGGEHSMTD----VFRAGEYADVAAVTKGKGTQGPVKRWGVQKRKGKHA 229
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ +
Sbjct: 230 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDIGEGTDATVE---- 282
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + ++KG GP +RV+ R
Sbjct: 283 -------GGFVNYGEVDGPYTLVKGSVPGPDQRVVRFR 313
>gi|330835825|ref|YP_004410553.1| 50S ribosomal protein L3P [Metallosphaera cuprina Ar-4]
gi|329567964|gb|AEB96069.1| 50S ribosomal protein L3P [Metallosphaera cuprina Ar-4]
Length = 341
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 120/265 (45%), Gaps = 50/265 (18%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK S+PR GS G P+KRS + +P + + PV L FIGYKAGMTH+ +
Sbjct: 3 HRKLSSPRRGSAGLRPRKRSEDILPSPRSYPVLNSSSPVML-GFIGYKAGMTHVYMIDED 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLR-SFKTVWAEHLSQECRRRFYKN 158
S + KEI VT++ETPP++++ + Y G S VW + LS + +
Sbjct: 62 KSSSMYGKEIYMPVTVIETPPILVMSLRAYAIDGKGESMSIGEVWGD-LSDKSK------ 114
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+ R K+ +K + +L K I +L ++ + R++ TQ
Sbjct: 115 YITRRIKSLKIQKEKTEQQL--KKIESNLDNISFF----RLLVSTQPY------------ 156
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+ ++ K PD + EIQ+ GG+ ++ + L +
Sbjct: 157 ----LIPSLGKKTPD-------------------IAEIQIGGGNPKAQLELGLKLLGNTV 193
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF + ++ID +GVT G GF+G
Sbjct: 194 SVRDVFNEGQLIDILGVTTGYGFQG 218
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K + EIQ+ GG+ ++ + L + V VF + ++ID +GVT G GF+GV R
Sbjct: 163 KKTPDIAEIQIGGGNPKAQLELGLKLLGNTVSVRDVFNEGQLIDILGVTTGYGFQGVIKR 222
Query: 375 WHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
+ ++LPR K KG RKV G PS V + GQ GYH RTE NK+I R+
Sbjct: 223 YGVQELPRWHKHRKGSRKVGTKGPSLGTPS----YVPQPGQMGYHRRTEYNKRILRISDE 278
Query: 431 IH 432
I+
Sbjct: 279 IN 280
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHH 485
G+ T G V R+ ++LPR K KG RKV G PS V + GQ GYH
Sbjct: 209 GVTTGYGFQGVIKRYGVQELPRWHKHRKGSRKVGTKGPSLGTPS----YVPQPGQMGYHR 264
Query: 486 RTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
RTE K+ L + + N I P GGF YG V N +L+++G +GP KR
Sbjct: 265 RTE---YNKRILRISDEIN----------QINPKGGFVRYGLVRNTYLLVQGSTIGPIKR 311
Query: 546 VITLR 550
+ LR
Sbjct: 312 PLFLR 316
>gi|435848748|ref|YP_007310998.1| LSU ribosomal protein L3P [Natronococcus occultus SP4]
gi|433675016|gb|AGB39208.1| LSU ribosomal protein L3P [Natronococcus occultus SP4]
Length = 339
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 115/279 (41%), Gaps = 57/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDD--PTKPVHLTAFIGYKAGMTHIVREADRPG 101
+APR GS+GF P++R++ + +P DD PT L F GYKAGMTH+V D
Sbjct: 5 NAPRKGSLGFGPRQRASSEVPRFNSWPDDDGQPT----LQGFAGYKAGMTHVVMVDDEAN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VTI+ETPPM V + Y +TP+G + VW E R
Sbjct: 61 SPTEGMEETVPVTIVETPPMRAVALRAYEDTPYGKKPLTEVWTGEFVPELDRVLD---LP 117
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
A + + L IA +RVI HT
Sbjct: 118 GDDYDADAAEDELRGYLEDGRIAD-----------VRVITHT------------------ 148
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP-- 279
V ++ +KK +ME ++ GGSV +++ +A + L
Sbjct: 149 -----------------VPSEVPSIPKKKPDVMETRVGGGSVEERVDFALELLADGGEHV 191
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 192 MNDVFRAGEYLDASGVTKGKGTQGPVKRWGVQKRKGKHA 230
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGSV +++ +A + L + VF E +D GVTKGKG +G
Sbjct: 158 KKKPDVMETRVGGGSVEERVDFALELLADGGEHVMNDVFRAGEYLDASGVTKGKGTQGPV 217
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 218 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDIGDG 277
Query: 431 IH-TKDG 436
T DG
Sbjct: 278 ADATVDG 284
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + G H + ++R G +G+ G RW +K K
Sbjct: 176 RVDFALELLADGGEH----VMNDVFRAGEYLDASGVTKGKGTQGPVKRWGVQKRKGKHAR 231
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + +A+ D
Sbjct: 232 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDIGDGADATVD----- 283
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ +IKG GP KR++ R
Sbjct: 284 ------GGFVNYGEVDGPHALIKGSLPGPDKRLLRFR 314
>gi|269864203|ref|XP_002651490.1| LSU ribosomal protein L3P [Enterocytozoon bieneusi H348]
gi|220064427|gb|EED42567.1| LSU ribosomal protein L3P [Enterocytozoon bieneusi H348]
Length = 125
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 8/82 (9%)
Query: 473 FTVARAGQKGYHHRTELFLCKKKYLSMVIKNN---ASTDYDLTEKSITPMGGFPHYGEVN 529
++VARAGQ G+H RT+ + L I N TD+DLT K+I PMGGFPHYG+V
Sbjct: 2 YSVARAGQVGFHRRTQ-----QNLLVYDIGNGKQPIQTDFDLTVKTINPMGGFPHYGQVT 56
Query: 530 NDFLMIKGCCMGPKKRVITLRK 551
ND++M+KGC GP KRV+TLRK
Sbjct: 57 NDYIMLKGCVTGPCKRVVTLRK 78
>gi|219851107|ref|YP_002465539.1| 50S ribosomal protein L3P [Methanosphaerula palustris E1-9c]
gi|254803682|sp|B8GKD3.1|RL3_METPE RecName: Full=50S ribosomal protein L3P
gi|219545366|gb|ACL15816.1| ribosomal protein L3 [Methanosphaerula palustris E1-9c]
Length = 337
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 52/271 (19%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ + P+KR+ K +P D +P+ L +F GYK GMTH++ D S
Sbjct: 7 PRRGSLAYSPRKRAKSQVPKYHSWPARD-GEPI-LQSFAGYKVGMTHVIMVDDHKNSPTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
K+I+ VTI+E PPM + + Y +G R+ VW E LS RR
Sbjct: 65 GKDIMVPVTIIEIPPMKVAAIRAYTADTYGKRALTEVWTEQLSTLLGRRI---------- 114
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
KK+ ++ G K +++ V A T + +L
Sbjct: 115 ---TLPKKYSEEAGFKALSEA------------VAAGTVTELHALMY------------- 146
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
TQPD+ L +K LME+ + GG++ K+ +A+ + + + V
Sbjct: 147 ----TQPDT--------LTGVPKKVPELMEVCIGGGTLEQKVEFAQSIIGNEVNLADVIG 194
Query: 286 QDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
E D +T GKG +G + ++ +++K
Sbjct: 195 AGEYADVTAITTGKGTQGPVKRWGIMLRKRK 225
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K LME+ + GG++ K+ +A+ + + + V E D +T GKG +G R
Sbjct: 157 KKVPELMEVCIGGGTLEQKVEFAQSIIGNEVNLADVIGAGEYADVTAITTGKGTQGPVKR 216
Query: 375 WHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RK +G +K + +G W+P V++ V + GQ GY RT+ NK+I ++G
Sbjct: 217 WGIMLRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIG 272
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 431 IHTKDGKVSVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTE 488
I T G RW RK +G +K + +G W+P V++ V + GQ GY RT+
Sbjct: 204 ITTGKGTQGPVKRWGIMLRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTD 263
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
K+ L + TD ITP GGF HYG + N ++MIKG GP KR+I
Sbjct: 264 F---NKRILKI---GENGTD-------ITPAGGFLHYGLLRNPYVMIKGSVPGPVKRLIR 310
Query: 549 LR 550
+R
Sbjct: 311 IR 312
>gi|389848017|ref|YP_006350256.1| 50S ribosomal protein L3P [Haloferax mediterranei ATCC 33500]
gi|388245323|gb|AFK20269.1| 50S ribosomal protein L3P [Haloferax mediterranei ATCC 33500]
Length = 327
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 60/273 (21%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGF P+KR+ + ++K +P DD + L F GYKAGMTH++ D S E
Sbjct: 1 MGFSPRKRAVKEVPRIKSWPDDDGSP--ALQGFAGYKAGMTHVMMVNDEADSPREGMEES 58
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF---YKNWYKSRQKAF 167
VT++ETPPM V + Y +TP+G++ VWA E R ++ ++S A
Sbjct: 59 VPVTVVETPPMRAVALRAYEQTPYGMKPKTEVWASEFHDELDRVLDLPAEDTFESDADAL 118
Query: 168 TKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNV 227
+A + A +RVI HT
Sbjct: 119 REAVE------------------AGEVDDLRVITHT------------------------ 136
Query: 228 NKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFA 285
V +L +KK +ME ++ GGS+ ++ +A +E+ + VF
Sbjct: 137 -----------VPAELKNVPKKKPDVMETRVGGGSMVERADFALDLVEEGGEHEMSDVFR 185
Query: 286 QDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
E +D GVTKGKG +G + + K++ K A
Sbjct: 186 AGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHA 218
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 306 IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVT 363
+ +L +KK +ME ++ GGS+ ++ +A +E+ + VF E +D GVT
Sbjct: 137 VPAELKNVPKKKPDVMETRVGGGSMVERADFALDLVEEGGEHEMSDVFRAGEYLDAAGVT 196
Query: 364 KGKGFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELN 421
KGKG +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELN
Sbjct: 197 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELN 256
Query: 422 KKIYRMGAG 430
K++ +G G
Sbjct: 257 KRLIDLGEG 265
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
R F + + G H +++ + Y AG+ G RW +K K +G R
Sbjct: 164 RADFALDLVEEGGEHEMSDVFRAGEYLDAAGVTKGKGTQGPVKRWGVQKRKGKHARQGWR 223
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + ++AS +
Sbjct: 224 RRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLIDLGEGDDASVE--------- 271
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + +IKG GP KR++ R
Sbjct: 272 --GGFVNYGEVDGSYALIKGSLPGPNKRLLRFR 302
>gi|448737862|ref|ZP_21719895.1| 50S ribosomal protein L3P [Halococcus thailandensis JCM 13552]
gi|445802824|gb|EMA53125.1| 50S ribosomal protein L3P [Halococcus thailandensis JCM 13552]
Length = 336
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 117/271 (43%), Gaps = 53/271 (19%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+G+ P+ R+ + +P DD +P L F GYKAGM+H+V D S
Sbjct: 7 PRKGSLGYGPRTRAHSEVPRFGSWPDDD-GQP-GLQGFAGYKAGMSHVVMIDDAANSPRE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E VT++ETPPM V + Y +TP+GLR W + + R +S
Sbjct: 65 GMEQTVPVTVVETPPMRAVALRAYEQTPYGLRPLTETWTDEFHDDLDRALDVPDGQSDPG 124
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
AF +A + +++G+ IR I HT + +
Sbjct: 125 AFEEAVEN--NEIGE----------------IRAITHTVPGE----------------MA 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
NV K +PD E+ V L +R +E L D IA +H + +VF
Sbjct: 151 NVPKKRPDVMETRVSGSDLDER------VEFGL------DLIAGGGEHE-----LTEVFR 193
Query: 286 QDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
E +D GVTKGKG +G + + K++ K
Sbjct: 194 PGEYMDAAGVTKGKGTQGPVKRWGVQKRKGK 224
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 18/127 (14%)
Query: 315 QKKAHLMEIQLNGGSVA-------DKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
+K+ +ME +++G + D IA +H + +VF E +D GVTKGKG
Sbjct: 154 KKRPDVMETRVSGSDLDERVEFGLDLIAGGGEHE-----LTEVFRPGEYMDAAGVTKGKG 208
Query: 368 FKGVTSRWHTKKLP----RKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKK 423
+G RW +K R+ +K R++ +G W+PSRV+ TV + GQ GYH RTELNK+
Sbjct: 209 TQGPVKRWGVQKRKGKHFRQGYK--RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKR 266
Query: 424 IYRMGAG 430
+ +G G
Sbjct: 267 LVSVGDG 273
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 21/155 (13%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLP----RKTHK 455
RV+F + G H TE+ + Y AG+ G RW +K R+ +K
Sbjct: 172 RVEFGLDLIAGGGEHELTEVFRPGEYMDAAGVTKGKGTQGPVKRWGVQKRKGKHFRQGYK 231
Query: 456 GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKS 515
R++ +G W+PSRV+ TV + GQ GYH RTEL K+ +S+ ++AS +
Sbjct: 232 --RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVSVGDGDDASAE------- 279
Query: 516 ITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF YGEV+ + ++KG GP +R++ R
Sbjct: 280 ----GGFVGYGEVDGPYALVKGSLPGPDQRLLRFR 310
>gi|448726794|ref|ZP_21709186.1| 50S ribosomal protein L3P [Halococcus morrhuae DSM 1307]
gi|445793840|gb|EMA44411.1| 50S ribosomal protein L3P [Halococcus morrhuae DSM 1307]
Length = 336
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 117/271 (43%), Gaps = 53/271 (19%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+G+ P+ R+ + +P DD +P L F GYKAGM+H+V D S
Sbjct: 7 PRKGSLGYGPRTRAHSEVPRFGSWPDDD-GQP-GLQGFAGYKAGMSHVVMIDDAANSPRE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E VT++ETPPM V + Y +TP+GLR W + + R +S
Sbjct: 65 GMEQTVPVTVVETPPMRAVALRAYEQTPYGLRPLTETWTDEFHDDLDRALDVPDGESDPG 124
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
AF +A + +++G+ IR I HT + +
Sbjct: 125 AFEEAVEN--NEIGE----------------IRAITHTVPGE----------------MA 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
NV K +PD E+ V L +R +E L D IA +H + +VF
Sbjct: 151 NVPKKRPDVMETRVGGSDLDER------VEFGL------DLIAGGGEHE-----LTEVFR 193
Query: 286 QDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
E +D GVTKGKG +G + + K++ K
Sbjct: 194 PGEYMDAAGVTKGKGTQGPVKRWGVQKRKGK 224
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 18/127 (14%)
Query: 315 QKKAHLMEIQLNGGSVA-------DKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
+K+ +ME ++ G + D IA +H + +VF E +D GVTKGKG
Sbjct: 154 KKRPDVMETRVGGSDLDERVEFGLDLIAGGGEHE-----LTEVFRPGEYMDAAGVTKGKG 208
Query: 368 FKGVTSRWHTKKLP----RKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKK 423
+G RW +K R+ +K R++ +G W+PSRV+ TV + GQ GYH RTELNK+
Sbjct: 209 TQGPVKRWGVQKRKGKHFRQGYK--RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKR 266
Query: 424 IYRMGAG 430
+ +G G
Sbjct: 267 LVSVGDG 273
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 21/155 (13%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLP----RKTHK 455
RV+F + G H TE+ + Y AG+ G RW +K R+ +K
Sbjct: 172 RVEFGLDLIAGGGEHELTEVFRPGEYMDAAGVTKGKGTQGPVKRWGVQKRKGKHFRQGYK 231
Query: 456 GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKS 515
R++ +G W+PSRV+ TV + GQ GYH RTEL K+ +S+ ++AS +
Sbjct: 232 --RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVSVGDGDDASAE------- 279
Query: 516 ITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF YGEV+ + ++KG GP +R++ R
Sbjct: 280 ----GGFVGYGEVDGPYSLVKGSLPGPDQRLLRFR 310
>gi|126460189|ref|YP_001056467.1| 50S ribosomal protein L3P [Pyrobaculum calidifontis JCM 11548]
gi|212288409|sp|A3MWI4.1|RL3_PYRCJ RecName: Full=50S ribosomal protein L3P
gi|126249910|gb|ABO09001.1| LSU ribosomal protein L3P [Pyrobaculum calidifontis JCM 11548]
Length = 338
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 120/265 (45%), Gaps = 57/265 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR+A +V+ +P+ + KP L F YKAGM H V DRP
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVDDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLR-SFKTVWAEHLSQECRRRFYKNW 159
S + KE+V+AVT+L+ PP+ + V Y P +G + + W + RR
Sbjct: 63 SPLYGKEVVKAVTVLDAPPLYVAAVRLYTLDPTNGYKVAVGEAWVSEPPADLRRVLTLPE 122
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
+K KA ++++D +A D +RV+ T
Sbjct: 123 KFDTEKQL-KALEEYRD------VAVD----------VRVLVAT---------------- 149
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
QP S + K P+ ++EI + G S+ ++I +A L + +
Sbjct: 150 -QPRLSGIGKKTPE-------------------VLEIPVGGVPSIDERINFAISLLGKTV 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VF +++D I VTKGKG++G
Sbjct: 190 SPKDVFTPGQLVDVIAVTKGKGYQG 214
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 315 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+K ++EI + G S+ ++I +A L + + VF +++D I VTKGKG++GV
Sbjct: 158 KKTPEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVK 217
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM---G 428
R+ LPR K KG R+ IG P+ + FT R GQ G+H RTE NK+I ++ G
Sbjct: 218 RFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNG 276
Query: 429 AGIHTKDG 436
A I K G
Sbjct: 277 AEITPKSG 284
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ + FT R GQ G+H RTE K+ L
Sbjct: 221 VTILPRWH------KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTE---YNKRIL 270
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I +N + ITP GFPHYG + +++++G G +KR++ LR
Sbjct: 271 K--IGDNGA--------EITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313
>gi|146302876|ref|YP_001190192.1| 50S ribosomal protein L3P [Metallosphaera sedula DSM 5348]
gi|172046889|sp|A4YCW6.1|RL3_METS5 RecName: Full=50S ribosomal protein L3P
gi|145701126|gb|ABP94268.1| LSU ribosomal protein L3P [Metallosphaera sedula DSM 5348]
Length = 341
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 113/267 (42%), Gaps = 54/267 (20%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK S+PR GS G P+KRS + +P+ + PV L F+GYK GMTHI +
Sbjct: 3 HRKLSSPRRGSAGLRPRKRSEELLPSPRSYPEVNLPNPVTL-GFVGYKVGMTHIFMIDED 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAE--HLSQECRRRFY 156
S + KEI VT+LETPP+ ++ + Y G S VW + + RR
Sbjct: 62 RSSSMFGKEIYVPVTVLETPPIYVLALRAYGLNNRGEHSVMGEVWGDLGDFGKFITRRI- 120
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
R K K+ Q K D+ + R++ TQ
Sbjct: 121 ------RGLKIDKEKKEHQLK--------DIESNLESVSYFRLLVSTQPH---------- 156
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+ + K PD ++E+Q+ GG+ +++ + + L
Sbjct: 157 ------LIPALGKKTPD-------------------IVEVQIGGGNTKNQLEYGLKLLGN 191
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF + +++D IGVTKG GF+G
Sbjct: 192 TLSVRDVFKEGQLMDIIGVTKGHGFQG 218
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K ++E+Q+ GG+ +++ + + L + V VF + +++D IGVTKG GF+GV R
Sbjct: 163 KKTPDIVEVQIGGGNTKNQLEYGLKLLGNTLSVRDVFKEGQLMDIIGVTKGHGFQGVIKR 222
Query: 375 WHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+ ++LPR K KG RKV G PS V + GQ G+H RTE NK+I ++
Sbjct: 223 YGVQELPRWHKHRKGSRKVGTKGPSLGTPS----YVPQPGQMGFHRRTEYNKRILKI 275
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHH 485
G+ G V R+ ++LPR K KG RKV G PS V + GQ G+H
Sbjct: 209 GVTKGHGFQGVIKRYGVQELPRWHKHRKGSRKVGTKGPSLGTPS----YVPQPGQMGFHR 264
Query: 486 RTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
RTE Y ++K + T K I P GGF YG V N +L+++G +G KR
Sbjct: 265 RTE-------YNKRILKISDDT------KLINPKGGFVRYGLVKNTYLLVQGSTIGSIKR 311
Query: 546 VITLR 550
+ LR
Sbjct: 312 PLFLR 316
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K ++E+Q+ GG+ +++ + + L + V VF + +++D IGVTKG GF+ +
Sbjct: 163 KKTPDIVEVQIGGGNTKNQLEYGLKLLGNTLSVRDVFKEGQLMDIIGVTKGHGFQGVI 220
>gi|448415419|ref|ZP_21578219.1| 50S ribosomal protein L3P [Halosarcina pallida JCM 14848]
gi|445681077|gb|ELZ33518.1| 50S ribosomal protein L3P [Halosarcina pallida JCM 14848]
Length = 338
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 118/279 (42%), Gaps = 58/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMG+ P+ R+ + ++K +P DD + L F GYKAGMT ++ D S
Sbjct: 5 SRPRKGSMGYGPRTRATKEVPRIKSWPDDDGSP--ALQGFAGYKAGMTQVMMVNDESNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G + VWA + R
Sbjct: 63 REGMEEAVPVTVVETPPMRAVALRAYEDTPYGTKPLTEVWASEFDENLDR---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
A S+ A DLR + +V +RVI HT
Sbjct: 113 --ALDLPSED-----TFDDDADDLRSALEAGEVDDVRVITHT------------------ 147
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--P 279
MK + K KK +ME ++ GGS+ D++ +A + +
Sbjct: 148 ---------------VPAGMKNIPK--KKPDIMETRVGGGSLDDRVDFALDLVGEGGEHA 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ VF E +D GVTKGKG +G + + K++ K A
Sbjct: 191 MSDVFRAGEYMDVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ D++ +A + + + VF E +D GVTKGKG +G
Sbjct: 157 KKKPDIMETRVGGGSLDDRVDFALDLVGEGGEHAMSDVFRAGEYMDVAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELNKRLVDIGDG 276
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV F + G+ G H ++ ++R G AG+ G RW +K K
Sbjct: 174 DRVDFALDLVGEGGEHAMSD----VFRAGEYMDVAGVTKGKGTQGPVKRWGVQKRKGKHA 229
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + + + AS D
Sbjct: 230 RQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTEL---NKRLVDIGDGDEASVD---- 282
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GG+ YGEV+ ++KG GP KR++ R
Sbjct: 283 -------GGYVGYGEVDGPHALVKGSLPGPDKRLLRFR 313
>gi|354610537|ref|ZP_09028493.1| ribosomal protein L3 [Halobacterium sp. DL1]
gi|353195357|gb|EHB60859.1| ribosomal protein L3 [Halobacterium sp. DL1]
Length = 324
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 113/270 (41%), Gaps = 57/270 (21%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGF P+KR+ + +P DD V L F GYKAGMTH+V D+ S E
Sbjct: 1 MGFSPRKRAESEVPRFNSWPADD--GQVGLQGFAGYKAGMTHVVLVDDKANSPSEGMETS 58
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
VT++ETPPM V Y +TP+G + VWA+ + ++ R
Sbjct: 59 VPVTVVETPPMRAAAVRVYEDTPYGKKPLTEVWADDVHEDLDRALS-----------VPQ 107
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
S D+L + +D+ IRVI HT S++ K
Sbjct: 108 SGGDTDELTEMLENEDVAD-------IRVITHTVPGD----------------LSSIPKK 144
Query: 231 QPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDE 288
+PD +ME ++ GGS+ ++ +A + LE G VF E
Sbjct: 145 EPD-------------------IMETRVGGGSLQERADFAAELLEDGGVHEFGDVFRAGE 185
Query: 289 MIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
D GVTKGKG +G + + K++ K A
Sbjct: 186 FTDIAGVTKGKGTQGPVKRWGVQKRKGKHA 215
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K+ +ME ++ GGS+ ++ +A + LE G VF E D GVTKGKG +G
Sbjct: 143 KKEPDIMETRVGGGSLQERADFAAELLEDGGVHEFGDVFRAGEFTDIAGVTKGKGTQGPV 202
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ G G
Sbjct: 203 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQLGQTGYHQRTELNKRLIDFGEG 262
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 23/136 (16%)
Query: 423 KIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTV 475
++R G AG+ G RW +K K +G R+ + +G W+PSRV+ TV
Sbjct: 179 DVFRAGEFTDIAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTV 238
Query: 476 ARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE-KSITPMGGFPHYGEVNNDFLM 534
+ GQ GYH RTEL K+ + D E + GGFP+YGEV+ + +
Sbjct: 239 PQLGQTGYHQRTEL---NKRLI------------DFGEGDDVNAAGGFPNYGEVDGSYTL 283
Query: 535 IKGCCMGPKKRVITLR 550
+KG GP KR++ R
Sbjct: 284 VKGSVPGPDKRLVRFR 299
>gi|345005655|ref|YP_004808508.1| 50S ribosomal protein L3 [halophilic archaeon DL31]
gi|344321281|gb|AEN06135.1| ribosomal protein L3 [halophilic archaeon DL31]
Length = 338
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 58/279 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+GF P+ R+A +++ +P+D+ + L F GYKAGMTH+V D S
Sbjct: 5 SRPRKGSLGFGPRTRAASEVPRIRSWPEDEGSP--ALQGFAGYKAGMTHVVMVNDEEDSA 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPP+ V V Y +T +G + VW E R
Sbjct: 63 REGMEESVPVTVVETPPIRAVAVRAYEDTAYGKKPAAEVWTGEFHDELDRAL----DLPE 118
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ F + A +LR + + V +RVI HT +
Sbjct: 119 ENDF-------------EGDADELRTLVEEGSVDDLRVITHTTPSE-------------- 151
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--P 279
+N+ K +PD +ME ++ GGS+ +++ +A +E
Sbjct: 152 --LANIPKKEPD-------------------VMETRVGGGSLQERVDFALDLVEDGGEHE 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + +D G+TKGKG +G + + K++ K A
Sbjct: 191 FGDVFRAGQYLDASGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGK 366
+L +K+ +ME ++ GGS+ +++ +A +E G VF + +D G+TKGK
Sbjct: 151 ELANIPKKEPDVMETRVGGGSLQERVDFALDLVEDGGEHEFGDVFRAGQYLDASGITKGK 210
Query: 367 GFKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKI 424
G +G RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++
Sbjct: 211 GTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRL 270
Query: 425 YRMGAG 430
G G
Sbjct: 271 IDFGEG 276
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 401 RVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLPRK-THKGLR 458
RV F + G H ++ + Y +GI G RW +K K +G R
Sbjct: 175 RVDFALDLVEDGGEHEFGDVFRAGQYLDASGITKGKGTQGPVKRWGVQKRKGKHARQGWR 234
Query: 459 K-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD--------- 282
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ + ++KG GP +R++ R
Sbjct: 283 --GGFVNYGEVDGHYALVKGSLPGPDQRLLRFR 313
>gi|407462403|ref|YP_006773720.1| 50S ribosomal protein L3P [Candidatus Nitrosopumilus koreensis AR1]
gi|407046025|gb|AFS80778.1| 50S ribosomal protein L3P [Candidatus Nitrosopumilus koreensis AR1]
Length = 331
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKK ++ E ++GG + + A ++ L + I + Q+F +D +TKGKG++GV R
Sbjct: 155 QKKPYVFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKR 214
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W+ KK K+ K +R+V +G P V +TV RAGQ G+H R E +K+I MG +T+
Sbjct: 215 WNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRIEYDKRIMIMG---NTE 271
Query: 435 DGKVSVT 441
+ K+ +
Sbjct: 272 EDKLKIN 278
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 119/276 (43%), Gaps = 56/276 (20%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK +PR GS+ + P+ R+ +++ +PK D +P + A G+KAG IV DR
Sbjct: 4 RKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDRE 62
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWY 160
K++V T+L TPP++I+G+ GY + GL + V+AE +
Sbjct: 63 KVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIP------------ 110
Query: 161 KSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKD 220
K IA++ I+ Q+ +L ++S K
Sbjct: 111 --------------------KNIAKE-------------ISLKNKQENALDNAEKSLKKI 137
Query: 221 QPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 280
+ I + V V QKK ++ E ++GG + + A ++ L + I +
Sbjct: 138 KEIFAIV----------AVSPSAAGLEQKKPYVFEASVSGGDIPKQFAHVKELLGKEIKI 187
Query: 281 GQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
Q+F +D +TKGKG++G + + KK+ K
Sbjct: 188 DQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHK 223
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
A I G V RW+ KK K+ K +R+V +G P V +TV RAGQ G+H R E
Sbjct: 200 AAITKGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRIE 259
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
K+ + M +T+ D + I P GG+ H+G V DF+++KG G +R+I
Sbjct: 260 Y---DKRIMIM-----GNTEED--KLKINPDGGYKHFGLVKGDFIILKGSVPGTYRRLIK 309
Query: 549 LR-KMKLLKKRQKKAHLMEIQL 569
LR +++ + + K +++E+ +
Sbjct: 310 LRSQIRNVPAKVNKPNILEVVI 331
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
QKK ++ E ++GG + + A ++ L + I + Q+F +D +TKGKG++
Sbjct: 155 QKKPYVFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQ 209
>gi|386876303|ref|ZP_10118425.1| ribosomal protein L3, partial [Candidatus Nitrosopumilus salaria
BD31]
gi|386805879|gb|EIJ65376.1| ribosomal protein L3, partial [Candidatus Nitrosopumilus salaria
BD31]
Length = 296
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKK ++ E ++GG + + ++ L + I + Q+F +D +TKGKG++GV R
Sbjct: 154 QKKPYIFEASVSGGDIQKQFTHVKELLGKEIKIDQIFETGATVDVAAITKGKGWQGVIQR 213
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W KK K+ K +R+V +G P V +TV RAGQ G+H RTE +K+I MG
Sbjct: 214 WGVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQMGFHQRTEYDKRIMVMG 267
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 60/279 (21%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK+ PR GS+ + P+ R+ +++ +PK + +P + A G+KAG +V DR
Sbjct: 4 RKYHQPRRGSLAYSPRIRAKSMEARIRSWPKLNSEEP-KILAHCGFKAGCVQLVTIDDRD 62
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF-YKNW 159
K++V T+L TPP++I+G+ GY + +G + V+AE + + + KN
Sbjct: 63 KVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHYGAHAEFDVYAEDIPKNIAKEITIKNI 122
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
S + A + +LGK K I I + L Q
Sbjct: 123 EGSIENA--------EKRLGK-------------IKEIFAIVAVSPRAAGLEQ------- 154
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
KK ++ E ++GG + + ++ L + I
Sbjct: 155 -----------------------------KKPYIFEASVSGGDIQKQFTHVKELLGKEIK 185
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ Q+F +D +TKGKG++G +I +KK+Q K+
Sbjct: 186 IDQIFETGATVDVAAITKGKGWQG-VIQRWGVKKKQHKS 223
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 411 QKGYHHRTELNKK------IYRMGAGIHTK-----DGKVSVTSRWHTKKLPRKTHKGLRK 459
QK + H EL K I+ GA + G V RW KK K+ K +R+
Sbjct: 170 QKQFTHVKELLGKEIKIDQIFETGATVDVAAITKGKGWQGVIQRWGVKKKQHKSRKTVRE 229
Query: 460 VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPM 519
V +G P V +TV RAGQ G+H RTE K+ + M + D +E I P
Sbjct: 230 VGSLGPISPQSVMYTVPRAGQMGFHQRTEY---DKRIMVM-------GNTDNSEMKINPD 279
Query: 520 GGFPHYGEVNNDFLMIK 536
GG+ H+G V DF+++K
Sbjct: 280 GGYKHFGLVKGDFIILK 296
>gi|335310307|ref|XP_003361971.1| PREDICTED: 60S ribosomal protein L3-like, partial [Sus scrofa]
Length = 109
Score = 92.4 bits (228), Expect = 7e-16, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 55/70 (78%)
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
++KNNAST YD+T+KSITP+GGFP YGEVNNDF+M+KGC G KKRVITLRK L+ +
Sbjct: 15 MVKNNASTSYDMTDKSITPLGGFPRYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSR 74
Query: 560 KKAHLMEIQL 569
+ +E++
Sbjct: 75 RALENVELKF 84
>gi|13383338|gb|AAK20934.1| ribosomal protein L3 [Mus musculus]
Length = 67
Score = 92.0 bits (227), Expect = 7e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 53/61 (86%)
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G KKRV+TLRK L++ ++
Sbjct: 3 LIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKR 62
Query: 560 K 560
+
Sbjct: 63 R 63
>gi|393796608|ref|ZP_10379972.1| 50S ribosomal protein L3P [Candidatus Nitrosoarchaeum limnia BG20]
Length = 330
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKK ++ E ++GG V + A ++ L + I + Q+F ID +TKGKG++GV R
Sbjct: 154 QKKPYIFEALVSGGDVKKQFAHVKELLGKEIKIDQIFETGATIDVAAITKGKGWQGVIQR 213
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
+ KK K+ K +R+VA +G P+ V ++V RAGQ G+H RTE +KKI +G +T+
Sbjct: 214 FGVKKKQHKSRKTVREVASLGPISPASVMYSVPRAGQMGFHQRTEYDKKIMVIG---NTE 270
Query: 435 DGKVSVT 441
+ ++ +
Sbjct: 271 NNQIKIN 277
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 58/279 (20%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK++ PR GS +YP+ R+ +++ +P ++ +P + A G+KAG +V DR
Sbjct: 3 HRKYAQPRRGSAAYYPRGRAKSMEARIRTWPTNNSDEP-KILAHCGFKAGCVQLVTIDDR 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
+ K++V T+L TPP+ I+G+ GY + +GL + V+A
Sbjct: 62 DKTPNAGKQLVSLGTVLVTPPVSILGIRGYSKDHYGLHAEFDVYANE------------- 108
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
F K+ K + K+ ++ K+ K I I + L Q
Sbjct: 109 -------FPKSISKEINLKNKEGALENAEKILGRVKEIFAIVAVSPRAAGLEQ------- 154
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
KK ++ E ++GG V + A ++ L + I
Sbjct: 155 -----------------------------KKPYIFEALVSGGDVKKQFAHVKELLGKEIK 185
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ Q+F ID +TKGKG++G +I +KK+Q K+
Sbjct: 186 IDQIFETGATIDVAAITKGKGWQG-VIQRFGVKKKQHKS 223
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
A I G V R+ KK K+ K +R+VA +G P+ V ++V RAGQ G+H RTE
Sbjct: 199 AAITKGKGWQGVIQRFGVKKKQHKSRKTVREVASLGPISPASVMYSVPRAGQMGFHQRTE 258
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
KK MVI N + + I P GG+ H+G V DF+++KG G +R+I
Sbjct: 259 Y---DKKI--MVIGNTEN-----NQIKINPDGGYKHFGLVKGDFIILKGSVPGTYRRLIK 308
Query: 549 LR 550
LR
Sbjct: 309 LR 310
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKK ++ E ++GG V + A ++ L + I + Q+F ID +TKGKG++ +
Sbjct: 154 QKKPYIFEALVSGGDVKKQFAHVKELLGKEIKIDQIFETGATIDVAAITKGKGWQGVIQ 212
>gi|147919334|ref|YP_686930.1| 50S ribosomal protein L3P [Methanocella arvoryzae MRE50]
gi|121685298|sp|Q0W1Y9.1|RL3_UNCMA RecName: Full=50S ribosomal protein L3P
gi|110622326|emb|CAJ37604.1| 50S ribosomal protein L3P [Methanocella arvoryzae MRE50]
Length = 337
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 123/277 (44%), Gaps = 58/277 (20%)
Query: 45 APRHGSMGFYPKKRSARHRGKVKCFPK--DDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
APR GS+G+ P+ R+ + K++ + + D P + F+G+KAGM+HIV DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHS 61
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQ-ECRRRFYKNWYK 161
EI VTI+E P M + G+ Y ++P+G + W L E KN YK
Sbjct: 62 ATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYK 121
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ ++ A +L KK + DLR M + + +
Sbjct: 122 TDEQLAKIA------ELVKKGVVADLRVMT-----VTLTSEV------------------ 152
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
S + K P+ LME ++ GG +A + +A+ + + + +
Sbjct: 153 ---SGIPKKVPE-------------------LMENRIAGGDMAKRFEFAKSLMGKAVGIK 190
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
VFA E++D +TKG G +G ++ + +++K A
Sbjct: 191 DVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHA 227
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K LME ++ GG +A + +A+ + + + + VFA E++D +TKG G +G R
Sbjct: 157 KKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVR 216
Query: 375 WHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RK + +K V +G W+P R+++ V + GQ GYH RTE NK+I +MG
Sbjct: 217 WGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG 272
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V +G W+P R+++ V + GQ GYH RTE K+ L M K + IT
Sbjct: 233 RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTE---YNKRILKMGDK----------AEEIT 279
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
P GGF HYG + ND++M+KG GP KR++ +R K K+A
Sbjct: 280 PAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVRPKNMPKQA 324
>gi|48477712|ref|YP_023418.1| 50S ribosomal protein L3P [Picrophilus torridus DSM 9790]
gi|74567866|sp|Q6L1C7.1|RL3_PICTO RecName: Full=50S ribosomal protein L3P
gi|48430360|gb|AAT43225.1| large subunit ribosomal protein L3P [Picrophilus torridus DSM 9790]
Length = 329
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 66/123 (53%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K + EI++ G ++ ++I +A++ L I +D I VTKGKGF+GV R+
Sbjct: 149 KTPEIFEIRIGGSTIENRIKYAKERLGSNISFSDFSKPGNFVDVIAVTKGKGFQGVVKRF 208
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
K LPRK K R + +G WHP V+ TV +AGQ G+H RT N +I + H D
Sbjct: 209 GVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIKFDTKDHVDD 268
Query: 436 GKV 438
V
Sbjct: 269 INV 271
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 116/277 (41%), Gaps = 63/277 (22%)
Query: 47 RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINK 106
R GSM +YP+ R+ R +G ++ +P+ + V AF GYK GMTHI R S
Sbjct: 8 RRGSMAYYPRVRAKRIQGDIRSWPEIEGQTKVQ--AFAGYKVGMTHIQMVDYRKNSVTAG 65
Query: 107 KEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKA 166
+ I+ VT++E PP+ ++ + Y +GL WAE++ ++ RR K +R K
Sbjct: 66 QVIMAPVTVVEVPPLTVMSIRYYARGDNGLEVISEEWAENIDKDVLRRINK---INRHKK 122
Query: 167 FTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSN 226
+ K +R++ HT Q + S
Sbjct: 123 GIE---------------------VKDVDDVRLMVHTNPQ----------------LVSG 145
Query: 227 VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQ 286
V P+ + EI++ G ++ ++I +A++ L I
Sbjct: 146 VPSKTPE-------------------IFEIRIGGSTIENRIKYAKERLGSNISFSDFSKP 186
Query: 287 DEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLM 321
+D I VTKGKGF+G + +KLL ++ +K M
Sbjct: 187 GNFVDVIAVTKGKGFQGVVKRFGVKLLPRKNRKHRRM 223
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V R+ K LPRK K R + +G WHP V+ TV +AGQ G+H RT
Sbjct: 204 VVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRT------------ 251
Query: 500 VIKNNASTDYDLTE--KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I N +D + I GGF +YG V ND++++ G GP KR+I +R
Sbjct: 252 -IHNIRIIKFDTKDHVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIKMR 303
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
K + EI++ G ++ ++I +A++ L I +D I VTKGKGF+ V
Sbjct: 149 KTPEIFEIRIGGSTIENRIKYAKERLGSNISFSDFSKPGNFVDVIAVTKGKGFQGVV 205
>gi|385805567|ref|YP_005841965.1| 50S ribosomal protein L3P [Fervidicoccus fontis Kam940]
gi|383795430|gb|AFH42513.1| 50S ribosomal protein L3P [Fervidicoccus fontis Kam940]
Length = 347
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 55/269 (20%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK SAPR G++G P++R +V+ +P + K + FIGYK GMTH + DR
Sbjct: 3 HRKKSAPRRGTLGVRPRQRFEGIVPRVRTWPVLEEKK-IFPLGFIGYKVGMTHALVVDDR 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGY-VETPHGLRSFKTVWA--EHLSQECRRRFY 156
S K+I VT+LETPPM++ G+ GY + G + WA + L R
Sbjct: 62 KTSITFGKQIFTPVTLLETPPMILAGIRGYSFDINEGKQPLTEAWATGDTLKNTNIERLI 121
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
K++ + Q KL + + + L +MA+ +R + +Q
Sbjct: 122 KSF----------SPNSTQQKL--EELEKSLSEMAE----LRALLLSQPT---------- 155
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+ ++K +P+ L+E+ L+G + + ++A + L +
Sbjct: 156 ------LAGGISKKKPE-------------------LIEVGLSGKDLKAQFSYAVEKLGK 190
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEM 305
I + ++F + +D I VTKGKGF+G +
Sbjct: 191 TIKISEIFNPGKFVDIIAVTKGKGFQGPV 219
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK L+E+ L+G + + ++A + L + I + ++F + +D I VTKGKGF+G R
Sbjct: 162 KKKPELIEVGLSGKDLKAQFSYAVEKLGKTIKISEIFNPGKFVDIIAVTKGKGFQGPVKR 221
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVA-RAGQKGYHHRTELNKKIYRMGAGIHT 433
+ K LPR HK + IGA P + A +AGQ G+H R + NK+I + A
Sbjct: 222 FGIKVLPR-WHKHRKAARKIGARGPGMGALSTAPQAGQMGFHQRVDYNKRILYI-ADTEG 279
Query: 434 KD----GKVSVTSRWHTKKLPR 451
KD K++ +S WH L R
Sbjct: 280 KDKELLAKINPSSGWHKYGLIR 301
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVA-RAGQKGYHHRTELFLCKKKY 496
+ V RWH K K RK IGA P + A +AGQ G+H R + K+
Sbjct: 224 IKVLPRWH------KHRKAARK---IGARGPGMGALSTAPQAGQMGFHQRVD---YNKRI 271
Query: 497 LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
L I + D +L K I P G+ YG + DF+++ G G +KR + LR+
Sbjct: 272 L--YIADTEGKDKELLAK-INPSSGWHKYGLIRTDFVILAGSIPGSRKRPVILRQ 323
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK L+E+ L+G + + ++A + L + I + ++F + +D I VTKGKGF+ V
Sbjct: 162 KKKPELIEVGLSGKDLKAQFSYAVEKLGKTIKISEIFNPGKFVDIIAVTKGKGFQGPV 219
>gi|329765069|ref|ZP_08256653.1| 50S ribosomal protein L3P [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138446|gb|EGG42698.1| 50S ribosomal protein L3P [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 330
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKK ++ E ++GG + + A ++ L + I + Q+F ID +TKGKG++GV R
Sbjct: 154 QKKPYIFEALVSGGDIKKQFAHVKELLGKEIKIDQIFETGATIDVAAITKGKGWQGVIQR 213
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
+ KK K+ K +R+VA +G P+ V ++V RAGQ G+H RTE +KKI +G +T+
Sbjct: 214 FGVKKKQHKSRKTVREVASLGPISPASVMYSVPRAGQMGFHQRTEYDKKIMVIG---NTE 270
Query: 435 DGKVSVT 441
+ ++ +
Sbjct: 271 NNQIKIN 277
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 58/279 (20%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK++ PR GS +YP+ R+ +++ +P ++ +P + A G+KAG +V DR
Sbjct: 3 HRKYAQPRRGSAAYYPRGRAKSMEARIRTWPTNNSDEP-KILAHCGFKAGCVQLVTIDDR 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
+ K++V T+L TPP+ I+G+ GY + +GL + V+A
Sbjct: 62 DKTPNAGKQLVSLGTVLVTPPVSILGIRGYSKDHYGLHAEFDVYANE------------- 108
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
F K+ K + K+ ++ K+ K I I + L Q
Sbjct: 109 -------FPKSISKEINLKNKEGALENAEKILGRVKEIFAIVAVSPRAAGLEQ------- 154
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
KK ++ E ++GG + + A ++ L + I
Sbjct: 155 -----------------------------KKPYIFEALVSGGDIKKQFAHVKELLGKEIK 185
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ Q+F ID +TKGKG++G +I +KK+Q K+
Sbjct: 186 IDQIFETGATIDVAAITKGKGWQG-VIQRFGVKKKQHKS 223
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
A I G V R+ KK K+ K +R+VA +G P+ V ++V RAGQ G+H RTE
Sbjct: 199 AAITKGKGWQGVIQRFGVKKKQHKSRKTVREVASLGPISPASVMYSVPRAGQMGFHQRTE 258
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
KK MVI N + + I P GG+ H+G V DF+++KG G +R+I
Sbjct: 259 Y---DKKI--MVIGNTEN-----NQIKINPDGGYKHFGLVKGDFIILKGSVPGTYRRLIK 308
Query: 549 LR 550
LR
Sbjct: 309 LR 310
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKK ++ E ++GG + + A ++ L + I + Q+F ID +TKGKG++ +
Sbjct: 154 QKKPYIFEALVSGGDIKKQFAHVKELLGKEIKIDQIFETGATIDVAAITKGKGWQGVIQ 212
>gi|448426507|ref|ZP_21583356.1| 50S ribosomal protein L3P [Halorubrum terrestre JCM 10247]
gi|448452123|ref|ZP_21593143.1| 50S ribosomal protein L3P [Halorubrum litoreum JCM 13561]
gi|448484334|ref|ZP_21606041.1| 50S ribosomal protein L3P [Halorubrum arcis JCM 13916]
gi|448508628|ref|ZP_21615579.1| 50S ribosomal protein L3P [Halorubrum distributum JCM 9100]
gi|448517689|ref|ZP_21617263.1| 50S ribosomal protein L3P [Halorubrum distributum JCM 10118]
gi|445679387|gb|ELZ31854.1| 50S ribosomal protein L3P [Halorubrum terrestre JCM 10247]
gi|445697254|gb|ELZ49324.1| 50S ribosomal protein L3P [Halorubrum distributum JCM 9100]
gi|445705904|gb|ELZ57792.1| 50S ribosomal protein L3P [Halorubrum distributum JCM 10118]
gi|445809767|gb|EMA59805.1| 50S ribosomal protein L3P [Halorubrum litoreum JCM 13561]
gi|445820109|gb|EMA69938.1| 50S ribosomal protein L3P [Halorubrum arcis JCM 13916]
Length = 338
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 115/280 (41%), Gaps = 60/280 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ +++ +P+DD L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSLGYGPRTRADSEVPRIRSWPEDDGAP--ALQGFAGYKAGMTHVMMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETP M V V Y TP+G + + VWA +E R
Sbjct: 63 REGMEEAVPVTVVETPQMYAVAVRAYENTPYGQKPVEEVWATEFHEELDRAL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYC-----KVIRVIAHTQNQQQSLHQNQQSHT 218
D ++T +D ++ +RVI HT
Sbjct: 115 ------------DLPAEETFEEDADELRALLDDDVVDDVRVITHTAPSD----------- 151
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
SNV K +PD E+ V L++R A +++ +GG+
Sbjct: 152 -----LSNVPKKKPDVMETRVGGGSLEERADFA--LDLVADGGAHE-------------- 190
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + D G+TKGKG +G + + K++ K A
Sbjct: 191 -FGDVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ ++ +A + G VF + D G+TKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSLEERADFALDLVADGGAHEFGDVFRAGQYTDVSGITKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDFGEG 276
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
R F + G H + ++R G +GI G RW +K K
Sbjct: 175 RADFALDLVADGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++ +IKG GP +R++ LR
Sbjct: 283 ------GGFVNYGEVDGEYALIKGSLPGPDQRLLRLR 313
>gi|124028157|ref|YP_001013477.1| 50S ribosomal protein L3P [Hyperthermus butylicus DSM 5456]
gi|123978851|gb|ABM81132.1| 50S ribosomal protein L3P [Hyperthermus butylicus DSM 5456]
Length = 319
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 109/242 (45%), Gaps = 53/242 (21%)
Query: 66 VKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVG 125
+K +P+ P+ L AF+ YK GMTH+ D PGS + +EI VT+LE PPMV+
Sbjct: 1 MKSWPEVQSENPLPL-AFLAYKVGMTHVYVIDDEPGSITHGREIFMPVTVLEAPPMVVTA 59
Query: 126 VIGYVETPH-GLRSFKTVWA--EHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKT 182
V Y P+ GL + WA E L ++ Y+ + R KA KK + L K
Sbjct: 60 VRVYGYDPNIGLYTLSEAWAQPETLVEKYNLDIYRVVPRLRFPDPDKAVKKLEGLLDK-- 117
Query: 183 IAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMK 242
+R+IA TQ + + ++K +PD
Sbjct: 118 -----------VYDVRIIAATQPR----------------LVGGLSKKKPD--------- 141
Query: 243 LLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 301
L+EI++ GG S+ D+ +A + L + V VF + + +D I VTKGKGF
Sbjct: 142 ----------LLEIKIGGGSSIEDRFNYAVKLLGSELKVSDVFREGQFVDVIAVTKGKGF 191
Query: 302 KG 303
+G
Sbjct: 192 QG 193
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 15/123 (12%)
Query: 315 QKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+KK L+EI++ GGS + D+ +A + L + V VF + + +D I VTKGKGF+GV
Sbjct: 137 KKKPDLLEIKIGGGSSIEDRFNYAVKLLGSELKVSDVFREGQFVDVIAVTKGKGFQGVIK 196
Query: 374 RWHTKKLPR--------KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
R+ K+LPR ++ G R A +W V + GQ G+H RTE NK+I
Sbjct: 197 RFGVKELPRWHKHRKGSRSGPGTRGPATSFSWS------EVPQPGQMGFHRRTEYNKRIL 250
Query: 426 RMG 428
++G
Sbjct: 251 KIG 253
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RWH + ++ G R A +W V + GQ G+H RTE K+ L I
Sbjct: 205 RWHKHRKGSRSGPGTRGPATSFSWS------EVPQPGQMGFHRRTE---YNKRILK--IG 253
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+N ITP GGF HYG V + ++++ G G KR I LR
Sbjct: 254 DNGL--------EITPAGGFLHYGIVRSTYILLAGSIPGTPKRPIVLR 293
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 559 QKKAHLMEIQLNGGS-VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK L+EI++ GGS + D+ +A + L + V VF + + +D I VTKGKGF+ +
Sbjct: 137 KKKPDLLEIKIGGGSSIEDRFNYAVKLLGSELKVSDVFREGQFVDVIAVTKGKGFQGVI 195
>gi|448436252|ref|ZP_21587053.1| 50S ribosomal protein L3P [Halorubrum tebenquichense DSM 14210]
gi|448535708|ref|ZP_21622228.1| 50S ribosomal protein L3P [Halorubrum hochstenium ATCC 700873]
gi|445682920|gb|ELZ35330.1| 50S ribosomal protein L3P [Halorubrum tebenquichense DSM 14210]
gi|445703209|gb|ELZ55144.1| 50S ribosomal protein L3P [Halorubrum hochstenium ATCC 700873]
Length = 338
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 116/277 (41%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ +++ +P+DD L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSLGYGPRTRADSEVPRIRSWPEDDGAP--ALQGFAGYKAGMTHVMMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETP M V V Y ETP+G + VW+ +E R
Sbjct: 63 REGMEEAVPVTVVETPQMYAVAVRAYEETPYGQKPVAEVWSGEFHEELDRAL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKM--AKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+D + A++LR + +RVI HT +
Sbjct: 115 -------DLPAEDTF--EADAEELRALLDDDVVDDVRVITHTAPSE-------------- 151
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
SNV K +PD E+ V L++R A +++ GG+ G
Sbjct: 152 --LSNVPKKKPDVMETRVGGGSLEERADFA--LDLVAEGGAHE---------------FG 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
VF + D G+TKGKG +G + + K++ K A
Sbjct: 193 DVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ ++ +A + + G VF + D G+TKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSLEERADFALDLVAEGGAHEFGDVFRAGQYTDVSGITKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDFGEG 276
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
R F + + G H + ++R G +GI G RW +K K
Sbjct: 175 RADFALDLVAEGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++ +IKG GP +R++ R
Sbjct: 283 ------GGFVNYGEVDGEYALIKGSLPGPDQRLLRFR 313
>gi|448503712|ref|ZP_21613341.1| 50S ribosomal protein L3P [Halorubrum coriense DSM 10284]
gi|445691913|gb|ELZ44096.1| 50S ribosomal protein L3P [Halorubrum coriense DSM 10284]
Length = 338
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 117/282 (41%), Gaps = 64/282 (22%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ +++ +P+DD L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSLGYGPRTRAESEVPRIRSWPEDDGAP--ALQGFAGYKAGMTHVMMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETP M V V Y TP+G + + VWA +E R
Sbjct: 63 REGMEEAVPVTVVETPQMYAVAVRAYENTPYGQKPVEEVWATEFHEELDRAL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTI---AQDLRKM--AKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
D ++T A +LR + +RVI HT
Sbjct: 115 ------------DLPAEETFEADADELRALLDDDVVDDVRVITHTAPSD----------- 151
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
SNV K +PD +ME ++ GGS+ +++ +A + +
Sbjct: 152 -----LSNVPKKKPD-------------------VMETRVGGGSLEERVDFALDLVAEGG 187
Query: 279 P--VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + D G+TKGKG +G + + K++ K A
Sbjct: 188 AHEFGDVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ +++ +A + + G VF + D G+TKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSLEERVDFALDLVAEGGAHEFGDVFRAGQYTDVSGITKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDFGEG 276
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
RV F + + G H + ++R G +GI G RW +K K
Sbjct: 175 RVDFALDLVAEGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++ +IKG GP +R++ R
Sbjct: 283 ------GGFVNYGEVDGEYALIKGSLPGPDQRLLRFR 313
>gi|340344791|ref|ZP_08667923.1| 50S ribosomal protein L3 [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519932|gb|EGP93655.1| 50S ribosomal protein L3 [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 330
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKK ++ E ++GG + + A ++ L + I + Q+F ID +TKGKG++GV R
Sbjct: 154 QKKPYIFEALVSGGDIKKQFAHVKELLGKEIKIDQIFETGATIDVAAITKGKGWQGVIQR 213
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
+ KK K+ K +R+VA +G P+ V ++V RAGQ G+H RTE +K+I +G +T+
Sbjct: 214 FGVKKKQHKSRKTVREVASLGPISPASVMYSVPRAGQMGFHQRTEYDKRIMVIG---NTE 270
Query: 435 DGKVSVT 441
+ ++ +
Sbjct: 271 NNQIKIN 277
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 123/279 (44%), Gaps = 58/279 (20%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK++ PR GS +YP+ R+ +++ +PK++ +P + A G+KAG +V DR
Sbjct: 3 HRKYAQPRRGSAAYYPRGRAKSMEARIRTWPKNNSDEP-KILAHCGFKAGCVQLVTIDDR 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
+ K++V T+L TPP+ I+GV GY + +GL + V+A+ + +
Sbjct: 62 EKTPNAGKQLVSLGTVLVTPPVSILGVRGYSKDHYGLHAEFDVYAKEFPKNISKEIN--- 118
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
+K+++ A A K LG+ K I I + L Q
Sbjct: 119 FKNKEGAMENAEK----ILGR-------------VKEIFAIVAVSPRDAGLEQ------- 154
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
KK ++ E ++GG + + A ++ L + I
Sbjct: 155 -----------------------------KKPYIFEALVSGGDIKKQFAHVKELLGKEIK 185
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ Q+F ID +TKGKG++G +I +KK+Q K+
Sbjct: 186 IDQIFETGATIDVAAITKGKGWQG-VIQRFGVKKKQHKS 223
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
A I G V R+ KK K+ K +R+VA +G P+ V ++V RAGQ G+H RTE
Sbjct: 199 AAITKGKGWQGVIQRFGVKKKQHKSRKTVREVASLGPISPASVMYSVPRAGQMGFHQRTE 258
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
K+ MVI N + + I P GG+ H+G V DF+++KG G +R+I
Sbjct: 259 Y---DKRI--MVIGNTEN-----NQIKINPDGGYKHFGLVKGDFIILKGSVPGTYRRLIK 308
Query: 549 LR 550
LR
Sbjct: 309 LR 310
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
QKK ++ E ++GG + + A ++ L + I + Q+F ID +TKGKG++ +
Sbjct: 154 QKKPYIFEALVSGGDIKKQFAHVKELLGKEIKIDQIFETGATIDVAAITKGKGWQGVIQ 212
>gi|448489440|ref|ZP_21607663.1| 50S ribosomal protein L3P [Halorubrum californiensis DSM 19288]
gi|445694812|gb|ELZ46930.1| 50S ribosomal protein L3P [Halorubrum californiensis DSM 19288]
Length = 338
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 114/280 (40%), Gaps = 60/280 (21%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P+ R+ +++ +P+DD L F GYKAGMTH++ D S
Sbjct: 5 SRPRKGSLGYGPRTRADSEVPRIRSWPEDDGAP--ALQGFAGYKAGMTHVMMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETP M V V Y TP+G + + VWA +E R
Sbjct: 63 REGMEEAVPVTVVETPQMYAVAVRAYENTPYGQKPVEEVWATEFHEELDRAL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYC-----KVIRVIAHTQNQQQSLHQNQQSHT 218
D ++T +D ++ +RVI HT
Sbjct: 115 ------------DLPAEETFEEDADELRALLDDDVVDDVRVITHTAPSD----------- 151
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
SNV K +PD E+ V L++R A +++ GG+
Sbjct: 152 -----LSNVPKKKPDVMETRVGGGSLEERADFA--LDLVAEGGAHE-------------- 190
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
G VF + D G+TKGKG +G + + K++ K A
Sbjct: 191 -FGDVFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHA 229
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ ++ +A + + G VF + D G+TKGKG +G
Sbjct: 157 KKKPDVMETRVGGGSLEERADFALDLVAEGGAHEFGDVFRAGQYTDVSGITKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ G G
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDFGEG 276
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-TH 454
R F + + G H + ++R G +GI G RW +K K
Sbjct: 175 RADFALDLVAEGGAHEFGD----VFRAGQYTDVSGITKGKGTQGPVKRWGVQKRKGKHAR 230
Query: 455 KGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTE 513
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + ++AS D
Sbjct: 231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDFGEGDDASVD----- 282
Query: 514 KSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV+ ++ +IKG GP +R++ LR
Sbjct: 283 ------GGFVNYGEVDGEYALIKGSLPGPDQRLLRLR 313
>gi|294496017|ref|YP_003542510.1| 50S ribosomal protein L3P [Methanohalophilus mahii DSM 5219]
gi|292667016|gb|ADE36865.1| LSU ribosomal protein L3P [Methanohalophilus mahii DSM 5219]
Length = 337
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 52/260 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ H + + +P+ + +P L F GYK GMTH++ D S
Sbjct: 7 PRRGSLAFSPRKRAKSHIPRFRSWPEAE-GEP-KLQGFAGYKVGMTHVIMIDDAKNSLTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VT++ETP + I + Y +TP+G ++ W+ +L + RR
Sbjct: 65 GAEIAVPVTVIETPQIGIAAIRAYKDTPYGEKTISEAWSANLDGDIGRRI---------- 114
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
K K + + + +A L + K + IRVI +T I S
Sbjct: 115 ---KTPKNYNTEKSLENMAS-LVEEGKVSE-IRVITYT-------------------IPS 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+V+ +KKA +ME ++G V K +A+ L + + +F+
Sbjct: 151 SVSGIP----------------KKKADIMETAVSGSDVKAKFEYAKYILGSKVAISDIFS 194
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
+ +ID +T+G G +G +
Sbjct: 195 EGNIIDVAAITRGYGTEGPV 214
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KKA +ME ++G V K +A+ L + + +F++ +ID +T+G G +G R
Sbjct: 157 KKKADIMETAVSGSDVKAKFEYAKYILGSKVAISDIFSEGNIIDVAAITRGYGTEGPVKR 216
Query: 375 WHTKKLPRKTHK---GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
W + L + H LR+V +G W+P V + V + GQ GYH RTE NK+I ++ + +
Sbjct: 217 WGIQ-LAKNKHSRQSSLRQVGTLGPWNPPHVSWRVPQMGQAGYHQRTEYNKRILKVSSDV 275
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 17/113 (15%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
LR+V +G W+P V + V + GQ GYH RTE Y ++K S+D D +
Sbjct: 232 LRQVGTLGPWNPPHVSWRVPQMGQAGYHQRTE-------YNKRILK--VSSDVD----EV 278
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
P GGF +YG V D++++KG GP KR+I LR+ R K + + E QL
Sbjct: 279 NPAGGFVNYGLVGGDYILVKGTVPGPSKRLIRLRE----PTRPKTSAVGEPQL 327
>gi|448730377|ref|ZP_21712685.1| 50S ribosomal protein L3P [Halococcus saccharolyticus DSM 5350]
gi|445793545|gb|EMA44117.1| 50S ribosomal protein L3P [Halococcus saccharolyticus DSM 5350]
Length = 337
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 118/275 (42%), Gaps = 57/275 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P++R++ + +P+ D +P L F GYKAGM+H+V D S
Sbjct: 5 SRPRKGSLGYGPRQRASSEVPRFGSWPEAD-GQP-GLQGFAGYKAGMSHVVMIDDAANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+GLR W + + R ++
Sbjct: 63 REGMEQTVPVTVVETPPMRAVALRAYEDTPYGLRPLTETWTDEFHADLDRALDVPDGEAD 122
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
AF +A + + I IR I HT +
Sbjct: 123 PDAFREA-------ISEADIGD-----------IRAITHTVPGE---------------- 148
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VG 281
+NV K +PD +ME ++ GGS+ D++ + + + +
Sbjct: 149 MANVPKKRPD-------------------VMETRIGGGSLDDRVEFGLELITGGGEHNLT 189
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
+VF E +D GVTKGKG +G + + K++ K
Sbjct: 190 EVFRPGEYMDAAGVTKGKGTQGPVKRWGVQKRKGK 224
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K+ +ME ++ GGS+ D++ + + + + +VF E +D GVTKGKG +G
Sbjct: 154 KKRPDVMETRIGGGSLDDRVEFGLELITGGGEHNLTEVFRPGEYMDAAGVTKGKGTQGPV 213
Query: 373 SRWHTKKLP----RKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW +K R+ ++ R++ +G W+PSRV+ TV + GQ GYH RTELNK++ G
Sbjct: 214 KRWGVQKRKGKHFRQGYR--RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLVDAG 271
Query: 429 AG 430
G
Sbjct: 272 DG 273
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLP----RKTH 454
RV+F + G H+ TE+ + Y AG+ G RW +K R+ +
Sbjct: 171 DRVEFGLELITGGGEHNLTEVFRPGEYMDAAGVTKGKGTQGPVKRWGVQKRKGKHFRQGY 230
Query: 455 KGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEK 514
+ R++ +G W+PSRV+ TV + GQ GYH RTEL K+ + + S D
Sbjct: 231 R--RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDAGDGDEPSVD------ 279
Query: 515 SITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGE++ + ++KG GP +R++ R
Sbjct: 280 -----GGFVNYGEIDGPYALVKGSLPGPDQRLLRFR 310
>gi|325969277|ref|YP_004245469.1| 50S ribosomal protein L3P [Vulcanisaeta moutnovskia 768-28]
gi|323708480|gb|ADY01967.1| 50S ribosomal protein L3P [Vulcanisaeta moutnovskia 768-28]
Length = 342
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 109/265 (41%), Gaps = 56/265 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K P+ GSM +YP+KR+ K + +P P KP+ L F+ YKAGM H V DRP
Sbjct: 4 KIHRPKRGSMAYYPRKRAESLVAKFRVWPDPRPGKPM-LLGFVAYKAGMAHAVFIDDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLR-SFKTVWAEHLSQECRRRFYKNW 159
S KE+++ VTIL++PP+ ++ Y P L+ S VW + ++ R+
Sbjct: 63 SPFYSKEVIKPVTILDSPPIKVIAFKAYTYDPWKNLKLSLGEVWMPDVPKDIARKI---- 118
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
+K K+ + + + IR + T
Sbjct: 119 ------------PTLPEKFNKEEMMKKILDNVDVITEIRALVAT---------------- 150
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
QP S + K P+ L+EI + G + I +A L + I
Sbjct: 151 -QPRLSGIGKKTPE-------------------LLEIPIGGVDDINQLIKYADSILGKDI 190
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF + + +D +TKGKG +G
Sbjct: 191 NVTDVFNEGQYVDVAAITKGKGLQG 215
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 315 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+K L+EI + G + I +A L + I V VF + + +D +TKGKG +GV
Sbjct: 159 KKTPELLEIPIGGVDDINQLIKYADSILGKDINVTDVFNEGQYVDVAAITKGKGLQGVVK 218
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
R++ K LP+ K KG R++ IG +P+ + FT R GQ G H RTE NK+I ++G
Sbjct: 219 RFNVKILPKWHKHRKGYRRIGAIGPQNPA-LAFTTPRPGQMGLHKRTEYNKRILKIG 274
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 420 LNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVAR 477
N+ Y A I G V R++ K LP+ K KG R++ IG +P+ + FT R
Sbjct: 196 FNEGQYVDVAAITKGKGLQGVVKRFNVKILPKWHKHRKGYRRIGAIGPQNPA-LAFTTPR 254
Query: 478 AGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKG 537
GQ G H RTE K+ L + L +TP GFPHYG V ++ ++G
Sbjct: 255 PGQMGLHKRTE---YNKRILKI----------GLNGAEVTPSSGFPHYGIVKGPYMALEG 301
Query: 538 CCMGPKKRVITLR 550
G KR++TLR
Sbjct: 302 SVPGIVKRLVTLR 314
>gi|432332011|ref|YP_007250154.1| archaeal ribosomal protein L3 [Methanoregula formicicum SMSP]
gi|432138720|gb|AGB03647.1| archaeal ribosomal protein L3 [Methanoregula formicicum SMSP]
Length = 337
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 109/264 (41%), Gaps = 52/264 (19%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GS+ F P+KR+ H K + +P + P+ L F GYK GMTH+V D
Sbjct: 3 KINRPRRGSLAFSPRKRAKSHIPKYQSWPSVE-GAPI-LQGFAGYKVGMTHVVMVDDHKS 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S KEI+ VT++E P M + + Y + +G +F +WAE L RR N K
Sbjct: 61 SPTEGKEIMVPVTVIEVPAMKVAAIRAYSKDTYGKHAFTELWAEQLDGVLGRRI--NLPK 118
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
+ A KK+ D + T+A+ I +A+TQ
Sbjct: 119 EYDR--DAAVKKFSDAVAAGTVAE-----------IYALAYTQPAS-------------- 151
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
S V K PD LMEI++ G + +A+ L + + +
Sbjct: 152 --MSGVPKKVPD-------------------LMEIKVGGADIKKLFEFAQGLLGKEVGLS 190
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
V D +T GKG +G +
Sbjct: 191 NVIQTGAYADITAITTGKGTQGAV 214
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 431 IHTKDGKVSVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTE 488
I T G RW RK G +K V +G W+P +++ V + GQ GY RTE
Sbjct: 204 ITTGKGTQGAVKRWGVALRKRKHAVGGKKRHVGTLGPWNPHHIRWEVPQIGQLGYQQRTE 263
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
K+ L + NAS ITP GGF HYG + N ++++KG GP KR+I
Sbjct: 264 F---NKRILK--VSENAS--------EITPAGGFLHYGVLKNPYVLVKGSIPGPVKRLIR 310
Query: 549 LR 550
+R
Sbjct: 311 IR 312
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K LMEI++ G + +A+ L + + + V D +T GKG +G R
Sbjct: 157 KKVPDLMEIKVGGADIKKLFEFAQGLLGKEVGLSNVIQTGAYADITAITTGKGTQGAVKR 216
Query: 375 WHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
W RK G +K V +G W+P +++ V + GQ GY RTE NK+I ++
Sbjct: 217 WGVALRKRKHAVGGKKRHVGTLGPWNPHHIRWEVPQIGQLGYQQRTEFNKRILKV 271
>gi|124484910|ref|YP_001029526.1| 50S ribosomal protein L3P [Methanocorpusculum labreanum Z]
gi|212288407|sp|A2SPK3.1|RL3_METLZ RecName: Full=50S ribosomal protein L3P
gi|124362451|gb|ABN06259.1| LSU ribosomal protein L3P [Methanocorpusculum labreanum Z]
Length = 333
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 55/273 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ +YP+KR+ K + +P+ + +P+ L F GYKAGMTH++ D S
Sbjct: 6 PRAGSLAYYPRKRAKGIVPKYQSWPEYN-GQPM-LQGFAGYKAGMTHVIMIDDHKKSPTE 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KE++ VT++E P M + + YV+ +G VWAE+L R K++
Sbjct: 64 GKEVMVPVTVIEIPAMTVAAIRVYVKDTYGKHPLTEVWAENLEALSGR-----ITKAKTN 118
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
KA++K +G V+ V+ + L +
Sbjct: 119 NAAKATEKINAAIG---------------DVVEVMVLMYTKPTEL--------------T 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
V K PD LMEI++ GGS ++ +A L + + + +
Sbjct: 150 GVPKKVPD-------------------LMEIRVAGGSAQERFDYALSILGTDVDMKSLLS 190
Query: 286 QDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+ + D G+TKGKGF+G + + +++K A
Sbjct: 191 EGQFADITGITKGKGFQGAVKRFGITLRKRKHA 223
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K LMEI++ GGS ++ +A L + + + ++ + D G+TKGKGF+G R
Sbjct: 153 KKVPDLMEIRVAGGSAQERFDYALSILGTDVDMKSLLSEGQFADITGITKGKGFQGAVKR 212
Query: 375 WHTKKLPRK--THKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+ RK K R + +G W P V++ V GQ G+ RTE NK+I ++G
Sbjct: 213 FGITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIG 268
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R + +G W P V++ V GQ G+ RTE + +IK + D I
Sbjct: 229 RHIGTLGPWTPHHVRWQVPMPGQMGFQQRTE-------FNKRIIKIGENAD------EIN 275
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLME 566
P GGF HYG V N++++IKG GP KR++ +R + +++ +A ++E
Sbjct: 276 PAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSATRMGEQKIQAPVVE 324
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K LMEI++ GGS ++ +A L + + + ++ + D G+TKGKGF+ V
Sbjct: 153 KKVPDLMEIRVAGGSAQERFDYALSILGTDVDMKSLLSEGQFADITGITKGKGFQGAV 210
>gi|327311641|ref|YP_004338538.1| 50S ribosomal protein L3P [Thermoproteus uzoniensis 768-20]
gi|326948120|gb|AEA13226.1| 50S ribosomal protein L3P [Thermoproteus uzoniensis 768-20]
Length = 337
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 129/285 (45%), Gaps = 60/285 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR++ +V+ +P + KP L F YK GM H V DR
Sbjct: 4 KINRPRRGSMGVYPRKRASDIVPRVRTWPDPNLGKP-SLLGFAAYKVGMLHAVVVEDRQT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLR-SFKTVWAEHLSQECRRRFYKNW 159
S + KE+V+A T+LE PP+ ++ Y P +G R + VWA + ++ R
Sbjct: 63 SPLFGKEVVKAATVLEAPPLRVIAARLYTLDPTNGYRKAVGEVWAPEVPKDVYR------ 116
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
A K +K DL K + ++ +A + ++
Sbjct: 117 ----------AVKTLPEKF-------DLEAELKRIEAVKGMA----------VDVRAIVA 149
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
QP + + K P+ ++EI + G SV D++ +A L + +
Sbjct: 150 TQPRLAGIGKKTPE-------------------ILEIPIGGVPSVEDRLKFALDMLGKEV 190
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKK--RQKKAH 319
+ VF+ +++D + +T+GKG++G + +K+L + + +K H
Sbjct: 191 RISDVFSAGQLVDVLAITRGKGWQGVIKRFGVKILPRWHKHRKGH 235
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 7/128 (5%)
Query: 315 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+K ++EI + G SV D++ +A L + + + VF+ +++D + +T+GKG++GV
Sbjct: 159 KKTPEILEIPIGGVPSVEDRLKFALDMLGKEVRISDVFSAGQLVDVLAITRGKGWQGVIK 218
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG--- 428
R+ K LPR K KG R+ IG P+ + FT R GQ G+H RTE NK+I ++G
Sbjct: 219 RFGVKILPRWHKHRKGHRRTGTIGPQSPA-LMFTQPRPGQMGFHQRTEYNKRILKIGNNP 277
Query: 429 AGIHTKDG 436
A I+ K G
Sbjct: 278 AEINPKGG 285
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 16/113 (14%)
Query: 440 VTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V R+ K LPR K KG R+ IG P+ + FT R GQ G+H RTE K+ L
Sbjct: 216 VIKRFGVKILPRWHKHRKGHRRTGTIGPQSPA-LMFTQPRPGQMGFHQRTE---YNKRIL 271
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I NN + I P GG+PHYG V +DFL++ G G +KR++ LR
Sbjct: 272 K--IGNNPA--------EINPKGGWPHYGLVKSDFLVLSGSVPGVQKRLVVLR 314
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 603
R I + +L +K ++EI + G SV D++ +A L + + + VF+ +++D
Sbjct: 145 RAIVATQPRLAGIGKKTPEILEIPIGGVPSVEDRLKFALDMLGKEVRISDVFSAGQLVDV 204
Query: 604 IGVTKGKGFKECV 616
+ +T+GKG++ +
Sbjct: 205 LAITRGKGWQGVI 217
>gi|448735135|ref|ZP_21717352.1| 50S ribosomal protein L3P [Halococcus salifodinae DSM 8989]
gi|445798748|gb|EMA49139.1| 50S ribosomal protein L3P [Halococcus salifodinae DSM 8989]
Length = 337
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 117/275 (42%), Gaps = 57/275 (20%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GS+G+ P++R++ + +P+ D +P L F GYKAGM+H+V D S
Sbjct: 5 SRPRKGSLGYGPRQRASSEVPRFGSWPEAD-GQP-GLQGFAGYKAGMSHVVMIDDAANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+GLR W + + R ++
Sbjct: 63 REGMEQTVPVTVVETPPMRAVALRAYEDTPYGLRPLTETWTDEFHADLDRALDVPDGEAD 122
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
AF +A + + I +R I HT
Sbjct: 123 PDAFREA-------ISEADIGD-----------VRAITHT-------------------- 144
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VG 281
V +++ +KK +ME ++ GGS+ D++ + + + +
Sbjct: 145 ---------------VPGEMVNIPKKKPDVMETRIGGGSLDDRVEFGLELITGGGEHNLT 189
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
+VF E +D GVTKGKG +G + + K++ K
Sbjct: 190 EVFRPGEYMDAAGVTKGKGTQGPVKRWGVQKRKGK 224
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 13/134 (9%)
Query: 303 GEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCI 360
GEM+ + +KK +ME ++ GGS+ D++ + + + + +VF E +D
Sbjct: 147 GEMVNIP-----KKKPDVMETRIGGGSLDDRVEFGLELITGGGEHNLTEVFRPGEYMDAA 201
Query: 361 GVTKGKGFKGVTSRWHTKKLP----RKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHH 416
GVTKGKG +G RW +K R+ +K R++ +G W+PSRV+ TV + GQ GYH
Sbjct: 202 GVTKGKGTQGPVKRWGVQKRKGKHFRQGYK--RRIGNLGPWNPSRVRSTVPQQGQTGYHQ 259
Query: 417 RTELNKKIYRMGAG 430
RTELNK++ G G
Sbjct: 260 RTELNKRLVDSGDG 273
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKK-IYRMGAGIHTKDGKVSVTSRWHTKKLP----RKTH 454
RV+F + G H+ TE+ + Y AG+ G RW +K R+ +
Sbjct: 171 DRVEFGLELITGGGEHNLTEVFRPGEYMDAAGVTKGKGTQGPVKRWGVQKRKGKHFRQGY 230
Query: 455 KGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEK 514
K R++ +G W+PSRV+ TV + GQ GYH RTEL K+ + + S D
Sbjct: 231 K--RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLVDSGDGDEPSVD------ 279
Query: 515 SITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGE++ + ++KG GP +R++ R
Sbjct: 280 -----GGFVNYGEIDGPYALVKGSLPGPDQRLLRFR 310
>gi|407464763|ref|YP_006775645.1| 50S ribosomal protein L3P [Candidatus Nitrosopumilus sp. AR2]
gi|407047951|gb|AFS82703.1| 50S ribosomal protein L3P [Candidatus Nitrosopumilus sp. AR2]
Length = 331
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
KK ++ E ++GG + + A ++ L + I + Q+F +D +TKG G++GV RW
Sbjct: 156 KKPYIFEAMVSGGDIEKQFAHVKELLGKEIKIEQIFETGATVDVAAITKGHGWQGVMRRW 215
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKD 435
+ KK K+ K +R+V +G P V +TV RAGQ G+H R E +K+I MG +T+
Sbjct: 216 NVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQTGFHQRVEYDKRIMIMG---NTES 272
Query: 436 GKVSVT 441
K+ +
Sbjct: 273 DKIKIN 278
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V RW+ KK K+ K +R+V +G P V +TV RAGQ G+H R E K+ + M
Sbjct: 211 VMRRWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQTGFHQRVEY---DKRIMIM 267
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
N +D + I P GG+ H+G V DF+++KG G KR+I LR
Sbjct: 268 ---GNTESD----KIKINPDGGYKHFGLVKGDFIILKGSVPGTYKRLIKLR 311
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 58/277 (20%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK PR GS+ + P+ R+ +++ +P+ T + A G+KAG IV DR
Sbjct: 4 RKRHQPRRGSLAYSPRVRARSMEARIRAWPRLSATDEPKILAHCGFKAGCVQIVSIDDRD 63
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF-YKNW 159
K++V T+L TPP++I+G+ GY + G + V+AE + + + KN
Sbjct: 64 KVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGKHAEFDVYAEDIPKSIAKEITIKNT 123
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
S + A ++ LRK+ + ++ V
Sbjct: 124 AGSVENAESR-----------------LRKIKEIYAIVAV-------------------- 146
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
+ ++MK K ++ E ++GG + + A ++ L + I
Sbjct: 147 -------------SPRAAGLEMK-------KPYIFEAMVSGGDIEKQFAHVKELLGKEIK 186
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
+ Q+F +D +TKG G++G M + KK+ K
Sbjct: 187 IEQIFETGATVDVAAITKGHGWQGVMRRWNVKKKQHK 223
>gi|154150075|ref|YP_001403693.1| 50S ribosomal protein L3P [Methanoregula boonei 6A8]
gi|166233155|sp|A7I5N9.1|RL3_METB6 RecName: Full=50S ribosomal protein L3P
gi|153998627|gb|ABS55050.1| ribosomal protein L3 [Methanoregula boonei 6A8]
Length = 337
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 109/266 (40%), Gaps = 56/266 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GS+ F P+KR+ K K +P+ L F GYK GMTH++ D
Sbjct: 3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAP--ALLGFAGYKVGMTHVLMVDDHKD 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY--KNW 159
S KEI+ VTI+E P M + + Y + +G + +WAE L + RR KN
Sbjct: 61 SPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRRVTSPKN- 119
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
Y S T A KK+ D L +A+ I +A+TQ
Sbjct: 120 YDS-----TAAKKKYSDALAAGLVAE-----------IYALAYTQPAT------------ 151
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
S V K PD LMEI++ GG +A + +A L + I
Sbjct: 152 ----MSGVPKKVPD-------------------LMEIKVAGGDIAKQYEYAFGLLGKEIR 188
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEM 305
+ V D +T GKG +G +
Sbjct: 189 LSNVIETGAYADITAITIGKGTQGPV 214
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K LMEI++ GG +A + +A L + I + V D +T GKG +G R
Sbjct: 157 KKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKR 216
Query: 375 WHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RK G R V +G W+P V++ V ++GQ GY RTE NK+I ++G
Sbjct: 217 WGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIG 272
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V +G W+P V++ V ++GQ GY RTE K + + +N A IT
Sbjct: 233 RHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEF----NKRILKIGENGAE---------IT 279
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGF +YG + N +++IKG GP KR+I +R
Sbjct: 280 PAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIR 312
>gi|28189887|dbj|BAC56558.1| similar to ribosomal protein L3 [Bos taurus]
Length = 104
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/68 (57%), Positives = 55/68 (80%)
Query: 502 KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKK 561
KNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G KKRV+TLRK L++ +++
Sbjct: 1 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 60
Query: 562 AHLMEIQL 569
++++
Sbjct: 61 LEKIDLKF 68
>gi|15790632|ref|NP_280456.1| 50S ribosomal protein L3P [Halobacterium sp. NRC-1]
gi|169236371|ref|YP_001689571.1| 50S ribosomal protein L3P [Halobacterium salinarum R1]
gi|42559695|sp|Q9HPD4.3|RL3_HALSA RecName: Full=50S ribosomal protein L3P
gi|226725182|sp|B0R656.1|RL3_HALS3 RecName: Full=50S ribosomal protein L3P
gi|10581159|gb|AAG19936.1| 50S ribosomal protein L13P [Halobacterium sp. NRC-1]
gi|167727437|emb|CAP14225.1| 50S ribosomal protein L3 [Halobacterium salinarum R1]
Length = 335
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K +ME ++ GG++AD++ +A +E G VF E D G+TKGKG +G
Sbjct: 154 KKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPV 213
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ + G
Sbjct: 214 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDG 273
Query: 431 IH-TKDG 436
T DG
Sbjct: 274 DEPTPDG 280
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 112/275 (40%), Gaps = 57/275 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GSMGF P+KR+ + +P DD V L F GYKAGMTH+V D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADD--GEVGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
E VT++ETPPM V Y +TP+G + VWA+ + R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTLSVPDEGGDTD 124
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+A L + IA IRVI HT +
Sbjct: 125 ELIEA-------LDTEEIAD-----------IRVITHTVPGD----------------TA 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQV 283
V K PD +ME ++ GG++AD++ +A +E G V
Sbjct: 151 GVPKKNPD-------------------VMETRVGGGTLADRLEFAADLIEDGGVHAFGDV 191
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
F E D G+TKGKG +G + + K++ K A
Sbjct: 192 FRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHA 226
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 354 DEMIDCIGVTKGKGFKGVTSR--WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQ 411
DE+I+ + + + +T T +P+K + + + G R++F
Sbjct: 124 DELIEALDTEEIADIRVITHTVPGDTAGVPKK-NPDVMETRVGGGTLADRLEFAADLIED 182
Query: 412 KGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIG 464
G H + ++R G AGI G RW +K K +G R+ + +G
Sbjct: 183 GGVHAFGD----VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLG 238
Query: 465 AWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPH 524
W+PSRV+ TV + GQ GYH RTEL K+ + + D D TP GGFP+
Sbjct: 239 PWNPSRVRSTVPQQGQTGYHQRTEL---NKRLIDI-------NDGD----EPTPDGGFPN 284
Query: 525 YGEVNNDFLMIKGCCMGPKKRVITLR 550
YGEV+ + ++KG GP++R++ R
Sbjct: 285 YGEVDGPYTLVKGSVPGPEQRLVRFR 310
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K +ME ++ GG++AD++ +A +E G VF E D G+TKGKG + V
Sbjct: 154 KKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPV 213
>gi|305662572|ref|YP_003858860.1| 50S ribosomal protein L3 [Ignisphaera aggregans DSM 17230]
gi|304377141|gb|ADM26980.1| LSU ribosomal protein L3P [Ignisphaera aggregans DSM 17230]
Length = 340
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 52/266 (19%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
+HRK AP+ GS+G P+KR++ VK +P+ KP+ L FIGYK GMTH++ D
Sbjct: 2 AHRKTHAPKRGSLGLRPRKRASEIIPTVKSWPEISLDKPLPL-GFIGYKVGMTHVIMIDD 60
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYK 157
RPGS KEI VTI+ETPP++ + + Y + G L+ F +W E + +
Sbjct: 61 RPGSPTEGKEIFMPVTIIETPPIIPIALRTYTKDSLGYLKVFTDIWIEPPKE------LE 114
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
W R+ ++ + ++ + + + K + +I T +
Sbjct: 115 IW---RRVVTYNPTRDIEKRI------EMIERNIDIIKRVSIIVATNPKN---------- 155
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
++K PD E I + G S+ ++ +A + L +P
Sbjct: 156 ------VGGLSKKVPDIAE-------------------IAIGGSSINERFKYAYEVLGKP 190
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I + QVF + ID IGVTKGKGF+G
Sbjct: 191 IHINQVFNVGQFIDIIGVTKGKGFQG 216
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 6/117 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K + EI + G S+ ++ +A + L +PI + QVF + ID IGVTKGKGF+GV R
Sbjct: 161 KKVPDIAEIAIGGSSINERFKYAYEVLGKPIHINQVFNVGQFIDIIGVTKGKGFQGVIKR 220
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMG 428
+ K+LPR K KG R+ IG+ P+ + +AGQ G+H RTE NK+I MG
Sbjct: 221 FGVKELPRWHKHRKGSRR---IGSRSPTIGAMSETPQAGQMGFHRRTEYNKRILAMG 274
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K+LPR K KG R+ IG+ P+ + +AGQ G+H R
Sbjct: 207 GVTKGKGFQGVIKRFGVKELPRWHKHRKGSRR---IGSRSPTIGAMSETPQAGQMGFHRR 263
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L+M K + ITP GGFPHYG V + ++M++G +G KR
Sbjct: 264 TE---YNKRILAMGDKG----------EEITPSGGFPHYGIVKSMWIMVQGSTIGVPKRP 310
Query: 547 ITLR 550
+ LR
Sbjct: 311 LILR 314
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K + EI + G S+ ++ +A + L +PI + QVF + ID IGVTKGKGF+ +
Sbjct: 161 KKVPDIAEIAIGGSSINERFKYAYEVLGKPIHINQVFNVGQFIDIIGVTKGKGFQGVI 218
>gi|408404337|ref|YP_006862320.1| 50S ribosomal protein L3p [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|300521620|gb|ADK26021.1| r-protein L3p [Candidatus Nitrososphaera gargensis]
gi|408364933|gb|AFU58663.1| 50S ribosomal protein L3p [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 332
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 57/277 (20%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK+SAPR GS+ F P+ R+ +V+ +P+ K L F G+KAG H++ DR
Sbjct: 3 HRKYSAPRRGSVAFRPRARARSLEARVRTWPQLAAEKS-SLLGFAGFKAGCIHVLTIDDR 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
+ K+++ T++ TPP+ ++G+ GY + +G + V+A+ L +E R+F
Sbjct: 62 EKTPNFGKQLLNPATVIVTPPIRVIGIRGYKKDIYGQHAIFDVYAKDLPKELSRKFDA-- 119
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
KS +AF KA + LG + ++ ++A + N
Sbjct: 120 -KSSDEAFAKA----EGMLGSAS------------AIMAIVAVSPNS------------- 149
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
+ QK + E+ ++G + + + L + +
Sbjct: 150 ------------------------IGLSQKTPFVFEMAVSGKDAKSQYDYVKSVLGREVK 185
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
V +F + ID G+T+GKG +G + + +K+ K
Sbjct: 186 VSDIFQVGQNIDVFGITRGKGIEGPVTRFGIKRKQHK 222
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QK + E+ ++G + + + L + + V +F + ID G+T+GKG +G +R
Sbjct: 154 QKTPFVFEMAVSGKDAKSQYDYVKSVLGREVKVSDIFQVGQNIDVFGITRGKGIEGPVTR 213
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
+ K+ K+ K +R V +G P+ V +TVAR GQ+G+H RTE NK+I M K
Sbjct: 214 FGIKRKQHKSRKSVRAVGTLGPISPAVVMYTVARQGQRGFHQRTEYNKRILVMSN--TEK 271
Query: 435 DGKVSVT 441
DG+ S+
Sbjct: 272 DGQNSIN 278
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 10/139 (7%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
GI G +R+ K+ K+ K +R V +G P+ V +TVAR GQ+G+H RTE
Sbjct: 200 GITRGKGIEGPVTRFGIKRKQHKSRKSVRAVGTLGPISPAVVMYTVARQGQRGFHQRTEY 259
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
K+ L M ++T+ D + SI P GGF H+G V D+++++G G KR+I +
Sbjct: 260 ---NKRILVM-----SNTEKD-GQNSINPSGGFKHFGLVKGDYIIVRGSVPGVPKRLIKM 310
Query: 550 RK-MKLLKKRQKKAHLMEI 567
R+ ++ + K+ + ++E+
Sbjct: 311 RQPIRNVSKKVLEPKVLEV 329
>gi|126178514|ref|YP_001046479.1| 50S ribosomal protein L3P [Methanoculleus marisnigri JR1]
gi|166233158|sp|A3CSZ7.1|RL3_METMJ RecName: Full=50S ribosomal protein L3P
gi|125861308|gb|ABN56497.1| LSU ribosomal protein L3P [Methanoculleus marisnigri JR1]
Length = 337
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+L +K LME+++ GGS+ D+IA+A + L + I + E +D VT GKG
Sbjct: 150 MELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKG 209
Query: 368 FKGVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+G RW + RK +G +K + +G WHP V++ V + GQ GY RTE NK+I
Sbjct: 210 TEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRIL 269
Query: 426 RMGA 429
++GA
Sbjct: 270 KIGA 273
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 431 IHTKDGKVSVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTE 488
+ T G RW + RK +G +K + +G WHP V++ V + GQ GY RTE
Sbjct: 204 VTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTE 263
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
+ ++K A D ITP GGF HYG V +++IKG GP KR++
Sbjct: 264 -------FNKRILKIGADGD------EITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVR 310
Query: 549 LR 550
+R
Sbjct: 311 IR 312
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GS+ + P+KR+ + +P+ T + F GYK GMTH++ D
Sbjct: 3 KINRPRRGSLAYSPRKRAKSPVPRYGSWPEY--TGAPAVQGFAGYKVGMTHVIMVDDHKS 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF 155
S K+++ VT++E PPM + GV Y E +G + W L +E RR
Sbjct: 61 SPTEGKDVMVPVTVVEVPPMRVAGVRAYGEDTYGKHALTEAWTTDLDEELSRRI 114
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 609
R M+L +K LME+++ GGS+ D+IA+A + L + I + E +D VT G
Sbjct: 148 RPMELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTG 207
Query: 610 KGFKECV 616
KG + V
Sbjct: 208 KGTEGPV 214
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 241 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 300
M+L +K LME+++ GGS+ D+IA+A + L + I + E +D VT GKG
Sbjct: 150 MELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKG 209
Query: 301 FKGEM 305
+G +
Sbjct: 210 TEGPV 214
>gi|377824640|gb|AFB77876.1| 60S ribosomal protein L3, partial [Discoglossus sardus]
gi|377824642|gb|AFB77877.1| 60S ribosomal protein L3, partial [Discoglossus sardus]
gi|377824644|gb|AFB77878.1| 60S ribosomal protein L3, partial [Discoglossus sardus]
gi|377824646|gb|AFB77879.1| 60S ribosomal protein L3, partial [Discoglossus sardus]
gi|377824648|gb|AFB77880.1| 60S ribosomal protein L3, partial [Discoglossus sardus]
gi|377824650|gb|AFB77881.1| 60S ribosomal protein L3, partial [Discoglossus sardus]
Length = 54
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
KK+HLMEIQ+NGG++A+K+ WAR+ LEQ + +G VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWAREKLEQQVAIGGVFGQDEMIDVIGVTKGKGYK 54
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
KK+HLMEIQ+NGG++A+K+ WAR+ LEQ + +G VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWAREKLEQQVAIGGVFGQDEMIDVIGVTKGKGYK 54
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
KK+HLMEIQ+NGG++A+K+ WAR+ LEQ + +G VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWAREKLEQQVAIGGVFGQDEMIDVIGVTKGKGYK 54
>gi|399577346|ref|ZP_10771099.1| 50S ribosomal protein L3P [Halogranum salarium B-1]
gi|399237729|gb|EJN58660.1| 50S ribosomal protein L3P [Halogranum salarium B-1]
Length = 327
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 115/275 (41%), Gaps = 64/275 (23%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MGF P+KR+A +++ +P DD P L F GYKAGMTH+V D S E
Sbjct: 1 MGFGPRKRAASEVPRIRSWP-DDEGSPA-LQGFAGYKAGMTHVVMVNDESNSPREGMEES 58
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
VT++ETPPM V + Y +T +G + VW +E R
Sbjct: 59 VPVTVVETPPMRAVALRAYKDTAYGKKPVTEVWTTEFHEELDRTL--------------- 103
Query: 171 SKKWQDKLGKKTIAQD---LRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
D + T +D LR + KV +R+I HT + S
Sbjct: 104 -----DLPAESTFDEDADELRALLDDGKVDDLRMITHT-------------------VPS 139
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQV 283
+N +KK +ME ++ GGS+ ++ +A + +E + V
Sbjct: 140 ALNNVP----------------KKKPDVMETRVGGGSLDERADYALELVEAGGEHSMDDV 183
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
F E +D GVTKGKG +G + + K++ K A
Sbjct: 184 FRPGEYLDVSGVTKGKGTQGPVKRWGVQKRKGKHA 218
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+KK +ME ++ GGS+ ++ +A + +E + VF E +D GVTKGKG +G
Sbjct: 146 KKKPDVMETRVGGGSLDERADYALELVEAGGEHSMDDVFRPGEYLDVSGVTKGKGTQGPV 205
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 206 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQMGYHQRTELNKRLIDVGEG 265
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 14/93 (15%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R++ +G W+PSRV+ TV + GQ GYH RTEL K+ + + ++AS D
Sbjct: 224 RRIGNLGPWNPSRVRSTVPQQGQMGYHQRTEL---NKRLIDVGEGDDASVD--------- 271
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF +YGEV ++ +IKG GP KR+I R
Sbjct: 272 --GGFVNYGEVTGNYALIKGSLPGPNKRLIRFR 302
>gi|359416216|ref|ZP_09208568.1| 50S ribosomal protein L3P [Candidatus Haloredivivus sp. G17]
gi|358033419|gb|EHK01972.1| 50S ribosomal protein L3P [Candidatus Haloredivivus sp. G17]
Length = 323
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK E+ L GGSV + + +A + + + I VF E D + VTKGKG +G R
Sbjct: 152 KKKPANFELGL-GGSVEEILEYAEEMIGKEIEFSDVFEVGEYSDVVAVTKGKGVEGPVQR 210
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+ KKL KT K RK +G WHP ++ + + GQ+G+++RTE+NK+I G
Sbjct: 211 YGIKKLSHKTQKKRRKAGNVGPWHPDQLSWRIPLPGQQGFNNRTEINKRILDFG 264
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 73/298 (24%)
Query: 47 RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINK 106
R GS+ + PK R+ R + + D KP+ + GYK GMT ++R D G+
Sbjct: 8 RSGSLAYKPKVRADRIYPDINTWEDTDELKPL---GYAGYKVGMTRVLRVDDTEGA-TKG 63
Query: 107 KEIVEAVTILETPPMVIVGVIGYVETPH-GLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ + VTILE PP+ + G Y E P+ G + F W E S+E +R
Sbjct: 64 QEVADPVTILEAPPLRVYGARFYTEDPNSGEQVFTEAWTESPSKELQR------------ 111
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T K+ G + + ++ ++++ HT QP ++
Sbjct: 112 -ATDIPKE-----GNLDNMEKAKDNSESLTDVKLLVHT-----------------QPSRA 148
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
++K +P + E + GGSV + + +A + + + I VF
Sbjct: 149 GLSKKKPANFELGL--------------------GGSVEEILEYAEEMIGKEIEFSDVFE 188
Query: 286 QDEMIDCIGVTKGKGFKGEM-------IAMKLLKKRQKKAHLMEIQLNGGSVADKIAW 336
E D + VTKGKG +G + ++ K KKR+K ++ G D+++W
Sbjct: 189 VGEYSDVVAVTKGKGVEGPVQRYGIKKLSHKTQKKRRKAGNV------GPWHPDQLSW 240
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ KKL KT K RK +G WHP ++ + + GQ+G+++RTE+
Sbjct: 210 RYGIKKLSHKTQKKRRKAGNVGPWHPDQLSWRIPLPGQQGFNNRTEI------------- 256
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N D+ + + GGF +YGEVN+++++IKG GP +R++ LR L+K +K
Sbjct: 257 NKRILDFGEDPEEVQKEGGFKNYGEVNSNYILIKGSVPGPSERLVRLRTA--LRKDEKPG 314
Query: 563 H 563
Sbjct: 315 E 315
>gi|302348734|ref|YP_003816372.1| 50S ribosomal protein L3P [Acidilobus saccharovorans 345-15]
gi|302329146|gb|ADL19341.1| 50S ribosomal protein L3P [Acidilobus saccharovorans 345-15]
Length = 329
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 113/268 (42%), Gaps = 59/268 (22%)
Query: 55 PKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVT 114
P+KRS+ V +P+ KP L FIGYKAGMTH +R GS KE+ +T
Sbjct: 2 PRKRSSEFVPSVSSWPEVSAQKPT-LLGFIGYKAGMTHAFIVDNRQGSPTFGKEVFRPIT 60
Query: 115 ILETPPMVIVGVIGY-VETPHGLRSFKTVWA-EHLSQECRRRFYKNWYKSRQKAFTKASK 172
+LE PP+ ++ V GY + GL + WA L E RR S AF S
Sbjct: 61 VLEAPPIFVLAVRGYGYDENRGLYTVGEAWARPPLDLELERRI------SAIGAFDTQS- 113
Query: 173 KWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQP 232
+ + L K +RV+ TQ + + ++K P
Sbjct: 114 ----------MLKKLEASLSDIKEVRVLVATQPK----------------LTGGLSKKSP 147
Query: 233 DSHESHVQMKLLKKRQKKAHLMEIQLN--GGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290
D L+E+++ G V +A L + + VG+VF M+
Sbjct: 148 D-------------------LLEVKVASPGSDVKAAFDYATSILGKTLSVGEVFQPGLMV 188
Query: 291 DCIGVTKGKGFKGEM--IAMKLLKKRQK 316
D I VTKGKGF+G++ +K+L + K
Sbjct: 189 DVIAVTKGKGFQGDVKRFGVKVLPRWHK 216
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 315 QKKAHLMEIQLN--GGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K L+E+++ G V +A L + + VG+VF M+D I VTKGKGF+G
Sbjct: 144 KKSPDLLEVKVASPGSDVKAAFDYATSILGKTLSVGEVFQPGLMVDVIAVTKGKGFQGDV 203
Query: 373 SRWHTKKLPRKTHKGLRKVACIGA-WHPSRVQFTVARAGQKGYHHRTELNKKI 424
R+ K LPR HK +K IGA H + + GQ G+H RTE NK+I
Sbjct: 204 KRFGVKVLPR-WHKHRKKARGIGARSHGKGTWWEIPNPGQLGFHRRTEYNKRI 255
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGA-WHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVI 501
R+ K LPR HK +K IGA H + + GQ G+H RTE K+ L
Sbjct: 205 RFGVKVLPR-WHKHRKKARGIGARSHGKGTWWEIPNPGQLGFHRRTE---YNKRIL---- 256
Query: 502 KNNASTDYDLTEK--SITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
D+T+ + TP GGF HYG + ++++G G KR I +R
Sbjct: 257 --------DITDDWAAYTPAGGFLHYGIPRSTLVVLEGTIPGAVKRPIVMR 299
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 545 RVITLRKMKLLKKRQKKA-HLMEIQLN--GGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RV+ + KL KK+ L+E+++ G V +A L + + VG+VF M+
Sbjct: 129 RVLVATQPKLTGGLSKKSPDLLEVKVASPGSDVKAAFDYATSILGKTLSVGEVFQPGLMV 188
Query: 602 DCIGVTKGKGFKECV 616
D I VTKGKGF+ V
Sbjct: 189 DVIAVTKGKGFQGDV 203
>gi|73667662|ref|YP_303677.1| 50S ribosomal protein L3P [Methanosarcina barkeri str. Fusaro]
gi|109893521|sp|Q46G95.1|RL3_METBF RecName: Full=50S ribosomal protein L3P
gi|72394824|gb|AAZ69097.1| LSU ribosomal protein L3P [Methanosarcina barkeri str. Fusaro]
Length = 337
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 120/301 (39%), Gaps = 55/301 (18%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
P+ GS+ F P+KR+ H + + +P + T L F GYK GMTH++ D S
Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQ 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VTI+ETP + + + Y E G ++ VWA L E +RR
Sbjct: 65 GMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRIP--------- 115
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+ LG ++ KM + KV + A T +SL +
Sbjct: 116 --VPKGDNMAETLG------NIGKMIEEGKVSDIRAVTYTLPKSL--------------T 153
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
V K PD ES + + L K +A+ L + + VF
Sbjct: 154 GVPKKTPDIMESGISARDLNT-------------------KFEYAKSILGTLVSITDVFK 194
Query: 286 QDEMIDCIGVTKGKGFKGEM--IAMKLLK-KRQKKAHLMEIQLNGGSVADKIAWARQHLE 342
+ID +T GKG +G ++L+K K ++ L +I GG +++W +
Sbjct: 195 TGTLIDTAAITIGKGTQGPAKRWGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMG 254
Query: 343 Q 343
Q
Sbjct: 255 Q 255
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K +ME ++ + K +A+ L + + VF +ID +T GKG +G R
Sbjct: 157 KKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAITIGKGTQGPAKR 216
Query: 375 WHTKKLPRKTHK--GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
W + + K + LR++ +G + RV + V + GQ GYH RTE NK+I ++G+
Sbjct: 217 WGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGS 273
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 17/110 (15%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
LR++ +G + RV + V + GQ GYH RTE K+ L + +D + +
Sbjct: 232 LRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEF---NKRILKI------GSDGE----EV 278
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLME 566
TP GGF +YG V D+++IKG GP KR+I LR R KKA L E
Sbjct: 279 TPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRD----PIRAKKADLGE 324
>gi|257076559|ref|ZP_05570920.1| 50S ribosomal protein L3P [Ferroplasma acidarmanus fer1]
Length = 319
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K + E++++G ++AD+I A + L + + + +D I VTKGKGF+GV R+
Sbjct: 139 KTPEIFEVRISGSTIADRIKLAEEKLGKELHFDDFNSTGSFVDVISVTKGKGFQGVVKRF 198
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
K LPR K R + +G WHP V+ TV +AGQ G H RT N +I +
Sbjct: 199 GVKLLPRSNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGLHQRTIHNIRIMK 249
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V R+ K LPR K R + +G WHP V+ TV +AGQ G H RT + + +
Sbjct: 194 VVKRFGVKLLPRSNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGLHQRT---IHNIRIMKT 250
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
K I GGF YG V ND++++ G GP KR+I +R
Sbjct: 251 ATKEQVD--------EINVKGGFLKYGLVRNDYILLYGSISGPSKRLIKMR 293
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--I 306
K + E++++G ++AD+I A + L + + + +D I VTKGKGF+G +
Sbjct: 139 KTPEIFEVRISGSTIADRIKLAEEKLGKELHFDDFNSTGSFVDVISVTKGKGFQGVVKRF 198
Query: 307 AMKLLKKRQKKAHLM 321
+KLL + +K M
Sbjct: 199 GVKLLPRSNRKHRRM 213
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
M +YP+ R+ + +++ +P+ + + AF GYK GMTHI R S K I+
Sbjct: 1 MAYYPRVRAKKIGAEIRSWPEIEGKSKIQ--AFAGYKVGMTHIQVTDYRKTSVTAGKTIM 58
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF 155
VT++E PP+ ++ + Y + +GL+ F AE + +E +R
Sbjct: 59 VPVTVVEVPPINVIAIRYYEDGDNGLQVFAEKRAEQIEKEVFKRI 103
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
K + E++++G ++AD+I A + L + + + +D I VTKGKGF+ V
Sbjct: 139 KTPEIFEVRISGSTIADRIKLAEEKLGKELHFDDFNSTGSFVDVISVTKGKGFQGVV 195
>gi|307595041|ref|YP_003901358.1| 50S ribosomal protein L3 [Vulcanisaeta distributa DSM 14429]
gi|307550242|gb|ADN50307.1| ribosomal protein L3 [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 58/280 (20%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K P+ GSM +YP+KR+ + + +P P KP+ L F YKAGM H V DRP
Sbjct: 4 KIHRPKRGSMAYYPRKRAESLVARFRVWPDPHPGKPI-LLGFAAYKAGMAHAVVIDDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLR-SFKTVWAEHLSQECRRRFYKNW 159
S KE+V+ VTIL+ PP+ ++ Y P L+ S VW + ++ R+
Sbjct: 63 SPFYGKEVVKPVTILDAPPIKVIAFRAYTYDPWKNLKLSLGEVWMPDVPKDILRKI---- 118
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
+K K+ + + + +R I T
Sbjct: 119 ------------PVLPEKFNKEEMMKKILDNVDVITEVRAIVAT---------------- 150
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIA-WARQHLEQPI 278
QP S + K P+ ++EI + G ++I +A L + I
Sbjct: 151 -QPRLSGIGKKTPE-------------------ILEIPIGGVDDMNQIIKFADSILGKDI 190
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQK 316
+ VF++ + +D +TKGKG++G + +K+L K K
Sbjct: 191 NINDVFSEGQYVDVAAITKGKGWQGVVKRFNVKILPKWHK 230
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIA-WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+K ++EI + G ++I +A L + I + VF++ + +D +TKGKG++GV
Sbjct: 159 KKTPEILEIPIGGVDDMNQIIKFADSILGKDININDVFSEGQYVDVAAITKGKGWQGVVK 218
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
R++ K LP+ K KG R++ IG +P+ + FT R GQ G H RTE NK+I R+G
Sbjct: 219 RFNVKILPKWHKHRKGYRRIGAIGPQNPA-LTFTTPRPGQMGLHKRTEYNKRILRIG 274
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHR 486
A I G V R++ K LP+ K KG R++ IG +P+ + FT R GQ G H R
Sbjct: 205 AAITKGKGWQGVVKRFNVKILPKWHKHRKGYRRIGAIGPQNPA-LTFTTPRPGQMGLHKR 263
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L + + +TP GFPHYG + +++++G G KR+
Sbjct: 264 TE---YNKRILRI----------GMNGAEVTPSSGFPHYGIIKGPYIVLEGTVPGVVKRL 310
Query: 547 ITLR 550
+TLR
Sbjct: 311 VTLR 314
>gi|377824634|gb|AFB77873.1| 60S ribosomal protein L3, partial [Discoglossus montalentii]
gi|377824636|gb|AFB77874.1| 60S ribosomal protein L3, partial [Discoglossus montalentii]
gi|377824638|gb|AFB77875.1| 60S ribosomal protein L3, partial [Discoglossus montalentii]
gi|377824652|gb|AFB77882.1| 60S ribosomal protein L3, partial [Discoglossus pictus]
gi|377824654|gb|AFB77883.1| 60S ribosomal protein L3, partial [Discoglossus pictus]
gi|377824656|gb|AFB77884.1| 60S ribosomal protein L3, partial [Discoglossus jeanneae]
gi|377824658|gb|AFB77885.1| 60S ribosomal protein L3, partial [Discoglossus jeanneae]
gi|377824660|gb|AFB77886.1| 60S ribosomal protein L3, partial [Discoglossus scovazzi]
gi|377824662|gb|AFB77887.1| 60S ribosomal protein L3, partial [Discoglossus galganoi galganoi]
gi|377824664|gb|AFB77888.1| 60S ribosomal protein L3, partial [Discoglossus galganoi galganoi]
gi|377824666|gb|AFB77889.1| 60S ribosomal protein L3, partial [Discoglossus galganoi galganoi]
Length = 54
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 46/54 (85%)
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
KK+HLMEIQ+NGG++A+K+ WAR+ LEQ + + VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWAREKLEQQVAISGVFGQDEMIDVIGVTKGKGYK 54
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 46/54 (85%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
KK+HLMEIQ+NGG++A+K+ WAR+ LEQ + + VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWAREKLEQQVAISGVFGQDEMIDVIGVTKGKGYK 54
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 46/54 (85%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
KK+HLMEIQ+NGG++A+K+ WAR+ LEQ + + VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWAREKLEQQVAISGVFGQDEMIDVIGVTKGKGYK 54
>gi|374633068|ref|ZP_09705435.1| archaeal ribosomal protein L3 [Metallosphaera yellowstonensis MK1]
gi|373524552|gb|EHP69429.1| archaeal ribosomal protein L3 [Metallosphaera yellowstonensis MK1]
Length = 299
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K ++E+Q+ GG + ++ +A + L + + V VF + +++D IGVTKG GF+GV R
Sbjct: 121 KKTPDIVEVQIGGGDLKSQLQYAEKILGKTLSVTDVFKEGQLVDIIGVTKGHGFQGVIKR 180
Query: 375 WHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
+ ++LPR K KG RKV G PS V + GQ GYH RTE NK+I+++
Sbjct: 181 YGVQELPRWHKHRKGSRKVGTKGPSLGTPSY----VPQPGQTGYHRRTEYNKRIFKISND 236
Query: 431 IHTKDGK 437
+++ + K
Sbjct: 237 VNSINPK 243
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 49/223 (21%)
Query: 82 AFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FK 140
F+GYK GMTH+ + S KEI VT+LETPP+ ++ + Y G S
Sbjct: 2 GFVGYKVGMTHVFMVDENKSSSTYGKEIYVPVTVLETPPLNVLAIRAYGLDSKGEHSVIA 61
Query: 141 TVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVI 200
W + SQ N+ + R K +++K L K ++ + +R++
Sbjct: 62 EAWGDLGSQ-------LNYIQRRIKTLKLSNEKLAPALEK------IKSSIESVSFLRLL 108
Query: 201 AHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG 260
TQ + ++ K PD ++E+Q+ G
Sbjct: 109 ISTQPY----------------LIPSLGKKTPD-------------------IVEVQIGG 133
Query: 261 GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
G + ++ +A + L + + V VF + +++D IGVTKG GF+G
Sbjct: 134 GDLKSQLQYAEKILGKTLSVTDVFKEGQLVDIIGVTKGHGFQG 176
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHH 485
G+ G V R+ ++LPR K KG RKV G PS V + GQ GYH
Sbjct: 167 GVTKGHGFQGVIKRYGVQELPRWHKHRKGSRKVGTKGPSLGTPSYV----PQPGQTGYHR 222
Query: 486 RTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
RTE Y + K S D + SI P GGF YG V N +++I+G +G KR
Sbjct: 223 RTE-------YNKRIFK--ISNDVN----SINPKGGFVRYGLVRNSYMIIEGSTIGAIKR 269
Query: 546 VITLR 550
+ LR
Sbjct: 270 PLYLR 274
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K ++E+Q+ GG + ++ +A + L + + V VF + +++D IGVTKG GF+ +
Sbjct: 121 KKTPDIVEVQIGGGDLKSQLQYAEKILGKTLSVTDVFKEGQLVDIIGVTKGHGFQGVI 178
>gi|397780844|ref|YP_006545317.1| 50S ribosomal protein L3P [Methanoculleus bourgensis MS2]
gi|396939346|emb|CCJ36601.1| 50S ribosomal protein L3P [Methanoculleus bourgensis MS2]
Length = 337
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 8/147 (5%)
Query: 290 IDCIGVTKGKGFKGEMIAMK------LLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 343
+D I G+G E+ A+ L +K LME+++ GGS+ D+I +A L +
Sbjct: 126 LDAIRKAIGEGRVTELYAITYTQPDALTGVPKKVPDLMEMRIAGGSLDDQIEYAAGILGK 185
Query: 344 PIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSR 401
I + F E ID VT GKG +G RW + RK +G +K + +G WHP
Sbjct: 186 EIEITGNFEAGEYIDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHH 245
Query: 402 VQFTVARAGQKGYHHRTELNKKIYRMG 428
V++ V + GQ GY RTE NK+I ++G
Sbjct: 246 VRWQVPQIGQMGYQQRTEFNKRILKIG 272
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 431 IHTKDGKVSVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTE 488
+ T G RW + RK +G +K + +G WHP V++ V + GQ GY RTE
Sbjct: 204 VTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQIGQMGYQQRTE 263
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
K+ L + T+ D ITP GGF HYG V +++IKG GP KR++
Sbjct: 264 F---NKRILKI------GTNGD----DITPAGGFLHYGVVRGPYVLIKGSVPGPNKRLVR 310
Query: 549 LR 550
+R
Sbjct: 311 IR 312
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 109/264 (41%), Gaps = 52/264 (19%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K++ PR GS+ + P+KR+ +P+ V F GYK GMTH+V D
Sbjct: 3 KYNRPRRGSLAYSPRKRAKSPVPGYGSWPEYTGVPTVQ--GFAGYKVGMTHVVMVDDHKS 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S K+++ VT++E PPM + GV Y E +G + W L +E RR
Sbjct: 61 SPTEGKDVMVPVTVVEVPPMRVAGVRAYCEDTYGKHALTEAWTTDLDEELSRRI------ 114
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
TI ++ +A + + I + + L+
Sbjct: 115 --------------------TIPKNHDTVAALDAIRKAIG--EGRVTELYA--------- 143
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+ TQPD+ L +K LME+++ GGS+ D+I +A L + I +
Sbjct: 144 -----ITYTQPDA--------LTGVPKKVPDLMEMRIAGGSLDDQIEYAAGILGKEIEIT 190
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
F E ID VT GKG +G +
Sbjct: 191 GNFEAGEYIDVTAVTTGKGTEGPV 214
>gi|16082270|ref|NP_394728.1| 50S ribosomal protein L3P [Thermoplasma acidophilum DSM 1728]
gi|42559694|sp|Q9HIQ9.1|RL3_THEAC RecName: Full=50S ribosomal protein L3P
gi|10640617|emb|CAC12395.1| 50S ribosomal protein L3 related protein [Thermoplasma acidophilum]
Length = 331
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 316 KKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
KK + E+++ GG SV +++ +A+ HL + I + +D + +TKGKGF G R
Sbjct: 150 KKPEIFELRIGGGNSVKERLEYAKNHLGKQITFTDFSKPGKFVDVVSITKGKGFTGHVKR 209
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+ K LPRK K R + +G WHP V+ TV +AGQ G+ RT N ++ + G
Sbjct: 210 FGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYG 263
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ K LPRK K R + +G WHP V+ TV +AGQ G+ RT + KY
Sbjct: 209 RFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKY-----G 263
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N D SI GGF HYG V ND++++ G G KR+I +R RQK
Sbjct: 264 NKEEVD------SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRD----PARQKVP 313
Query: 563 HLMEIQLNGGSVADK 577
+ E++L S+ K
Sbjct: 314 DIEEVKLEYISLESK 328
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 133/323 (41%), Gaps = 74/323 (22%)
Query: 47 RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINK 106
R GSM +YP+ R+ K++ +P + V + F G+K GMTH+ R S
Sbjct: 8 RRGSMAYYPRVRAKSVDPKIRSWP--EIKGEVKVQGFAGFKVGMTHVEMIDYRKKSVTAG 65
Query: 107 KEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+ I+ VT++E PP+ +VG Y E G L WA+ L +E R+ + ++
Sbjct: 66 QPILVPVTVVEVPPLDVVGYRLYDEDAEGNLVVVFEAWAKDLDKEIFRKI----PEIKKV 121
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP-IQ 224
A + ++D +R+I T+N KD P I
Sbjct: 122 AERDPPESYED--------------------VRIIVATRN-------------KDVPGIP 148
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQV 283
S KK + E+++ GG SV +++ +A+ HL + I
Sbjct: 149 S-----------------------KKPEIFELRIGGGNSVKERLEYAKNHLGKQITFTDF 185
Query: 284 FAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 341
+ +D + +TKGKGF G + +KLL ++ +K H I G D W R +
Sbjct: 186 SKPGKFVDVVSITKGKGFTGHVKRFGVKLLPRKNRK-HRRMIGTLGPWHPD---WVRNTV 241
Query: 342 EQPIPVGQVFAQDEMIDCIGVTK 364
Q GQ+ Q I + V K
Sbjct: 242 PQ---AGQMGFQQRTISNVRVIK 261
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 560 KKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 612
KK + E+++ GG SV +++ +A+ HL + I + +D + +TKGKGF
Sbjct: 150 KKPEIFELRIGGGNSVKERLEYAKNHLGKQITFTDFSKPGKFVDVVSITKGKGF 203
>gi|116755016|ref|YP_844134.1| 50S ribosomal protein L3P [Methanosaeta thermophila PT]
gi|121693633|sp|A0B9X0.1|RL3_METTP RecName: Full=50S ribosomal protein L3P
gi|116666467|gb|ABK15494.1| LSU ribosomal protein L3P [Methanosaeta thermophila PT]
Length = 335
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K +MEI + G SV +++ A L + V +F E ID VTKGKG +G R
Sbjct: 153 KKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKR 212
Query: 375 WHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RK + LR V +G WHP+R+ + V + GQ GYH RTE NK+I +G
Sbjct: 213 WGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIG 268
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 114/260 (43%), Gaps = 56/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ +++ + D+ + F GYKAGMTH++ DRP S
Sbjct: 7 PRRGSLAFSPRKRAKSEVPRIRSWVADERA---GMAGFAGYKAGMTHVIMIDDRPRSLTE 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VT++E PPM + + Y G+R +WAE+LSQ+ R K+R+
Sbjct: 64 GMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--TIPKARRG 121
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
A + + D+L C+ IRV+AHT + + +
Sbjct: 122 ASLEDIESRVDEL---------------CE-IRVLAHTNPR----------------LLT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
V K PD +MEI + G SV +++ A L + V +F
Sbjct: 150 GVPKKVPD-------------------IMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFN 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E ID VTKGKG +G +
Sbjct: 191 VGEWIDVSAVTKGKGTQGPV 210
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 13/95 (13%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
LR V +G WHP+R+ + V + GQ GYH RTE K+ M I N + I
Sbjct: 228 LRHVGNLGPWHPARISWRVPQLGQTGYHQRTEF---NKRI--MAIGTNGT--------DI 274
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
TP GGF YG V N++++IKG GP KR++ +R+
Sbjct: 275 TPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRR 309
>gi|193083866|gb|ACF09547.1| ribosomal protein L3 [uncultured marine group II euryarchaeote
KM3-85-F5]
Length = 350
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 64/112 (57%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW 375
K +ME+ L GG K+ WA + L I + V+ + +D +GVTKGKG++G R+
Sbjct: 172 KTPEIMEVDLVGGDTEAKLDWAMERLGGQIGLDDVYQAGQEVDVVGVTKGKGWQGSIKRF 231
Query: 376 HTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
K L K K R+ +G + V+ T+ +AGQ GYH RTELNK+I R+
Sbjct: 232 GLKLLTHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQVGYHKRTELNKRILRI 283
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 124/315 (39%), Gaps = 63/315 (20%)
Query: 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIV 110
MG+ P+KR+ R ++ +P+ D ++ V + F G+KAGMTHI+
Sbjct: 1 MGYSPRKRAVRQFPRISSWPESDASE-VRVQGFAGWKAGMTHIL---------------- 43
Query: 111 EAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKA 170
+ +T P + + G E H + S R Y A
Sbjct: 44 ----LRDTNPPLYLSQAGSQEGGHSRFEASRMSVRLGSGSSRLARY---------GLQTA 90
Query: 171 SKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKT 230
+ W D I+Q ++ A+ ++ + + ++ + I S N +
Sbjct: 91 GEVWTD------ISQ-----GGPENLVPRFANQTRGERDIEEGRKPAKRGGRIPSRSNGS 139
Query: 231 QPDSHESHVQMKLLKKR--------------QKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
Q S ES L + R K +ME+ L GG K+ WA + L
Sbjct: 140 QEASIESLRGQDLSEVRLIVSTQPNMVGSIPSKTPEIMEVDLVGGDTEAKLDWAMERLGG 199
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLMEIQLNGGSVAD-K 333
I + V+ + +D +GVTKGKG++G + +KLL + K + GG++ D
Sbjct: 200 QIGLDDVYQAGQEVDVVGVTKGKGWQGSIKRFGLKLLTHKNSKR-----RRQGGNMGDFG 254
Query: 334 IAWARQHLEQPIPVG 348
+ R+ + Q VG
Sbjct: 255 TGYVRKTIRQAGQVG 269
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 380 LPRKTHKGLRKVACIGAWHPSRVQFTVAR-AGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
+P KT + + +V +G +++ + + R GQ G + +++ +G + G
Sbjct: 169 IPSKTPE-IMEVDLVGGDTEAKLDWAMERLGGQIGLDDVYQAGQEVDVVG--VTKGKGWQ 225
Query: 439 SVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLS 498
R+ K L K K R+ +G + V+ T+ +AGQ GYH RTEL K+ L
Sbjct: 226 GSIKRFGLKLLTHKNSKRRRQGGNMGDFGTGYVRKTIRQAGQVGYHKRTEL---NKRILR 282
Query: 499 MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ + E ITP GGF +YGEV N +++++G GP KR++ R
Sbjct: 283 I---------SNPDESEITPAGGFLNYGEVRNPYMIVQGSLPGPAKRLLRFR 325
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
K +ME+ L GG K+ WA + L I + V+ + +D +GVTKGKG++ +
Sbjct: 172 KTPEIMEVDLVGGDTEAKLDWAMERLGGQIGLDDVYQAGQEVDVVGVTKGKGWQGSI 228
>gi|255513436|gb|EET89702.1| ribosomal protein L3 [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 322
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 322 EIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLP 381
E + GG+ + +A Q + + + VF E ID + VTKGKG+ GV R ++L
Sbjct: 152 ESTVTGGNAEQRFDFAAQLVGKEVKPADVFKGGEFIDVVSVTKGKGWAGVIKRHGVRRLD 211
Query: 382 RKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVT 441
K + +R + +GA+ P ++ +TV R GQ G+++RTE NK+I +GA T+ KV++
Sbjct: 212 HKATQKIRHIGALGAFTPGKIMYTVPRPGQLGFNYRTEHNKRILVLGAASDTE--KVNIK 269
Query: 442 S 442
S
Sbjct: 270 S 270
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G V R ++L K + +R + +GA+ P ++ +TV R GQ G+++RTE K+
Sbjct: 197 GWAGVIKRHGVRRLDHKATQKIRHIGALGAFTPGKIMYTVPRPGQLGFNYRTE---HNKR 253
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
L + A++D TEK + G +YG V +D+++I+G GP KR++ L+K
Sbjct: 254 ILVL----GAASD---TEK-VNIKSGIKNYGLVKSDYILIEGSVPGPAKRIVRLKK 301
>gi|385804241|ref|YP_005840641.1| 50S ribosomal protein L3 [Haloquadratum walsbyi C23]
gi|339729733|emb|CCC41011.1| 50S ribosomal protein L3 [Haloquadratum walsbyi C23]
Length = 338
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 106/277 (38%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ +++ + +D V F GYKAGMT ++ D S
Sbjct: 5 SRPRKGSMGFSPRKRAESEVPRIRSWASNDGAPGVQ--GFAGYKAGMTQVLMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G + VW R
Sbjct: 63 REGMEEAVPVTVVETPPMRAVALRAYEDTPYGSKPLTEVWGREFDTSLERTL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+D A +R+I HT L +
Sbjct: 115 -------DLPNEDTFEDDAAALRDDAETGDIDDVRLITHT------LPAGMR-------- 153
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVG 281
N+ K PD +ME ++ GG++ D++ + + +
Sbjct: 154 --NIPKKTPD-------------------VMETRVGGGTLTDRVEFGLNLISDGGEHEIS 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E +D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYLDAAGVTKGKGTQGPVKRFGVQKRKGKHA 229
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K +ME ++ GG++ D++ + + + +F E +D GVTKGKG +G
Sbjct: 157 KKTPDVMETRVGGGTLTDRVEFGLNLISDGGEHEISDIFRAGEYLDAAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
R+ +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRFGVQKRKGKHARQGYRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIEIGNG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 NEPTVDG 283
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 378 KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIH 432
+ +P+KT + + G RV+F + G H ++ I+R G AG+
Sbjct: 153 RNIPKKTPD-VMETRVGGGTLTDRVEFGLNLISDGGEHEISD----IFRAGEYLDAAGVT 207
Query: 433 TKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELF 490
G R+ +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTEL
Sbjct: 208 KGKGTQGPVKRFGVQKRKGKHARQGYRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL- 266
Query: 491 LCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
K+ + + N + D GGF YGEV+ + +IKG GP +R++ R
Sbjct: 267 --NKRLIEIGNGNEPTVD-----------GGFVGYGEVDGPYALIKGSLPGPDQRLLRFR 313
>gi|13541155|ref|NP_110843.1| 50S ribosomal protein L3P [Thermoplasma volcanium GSS1]
gi|42559678|sp|Q97BX7.1|RL3_THEVO RecName: Full=50S ribosomal protein L3P
gi|14324543|dbj|BAB59470.1| ribosomal protein large subunit L3 [Thermoplasma volcanium GSS1]
Length = 331
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 316 KKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
KK + E+++ GG SV ++ +A HL + I + +D + VTKGKGF G R
Sbjct: 150 KKPEIFELRIGGGNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQR 209
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
+ K LPRK K R + +G WHP V+ TV +AGQ GY RT N ++ + G
Sbjct: 210 FGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG 265
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 15/135 (11%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ K LPRK K R + +G WHP V+ TV +AGQ GY RT + + V+K
Sbjct: 209 RFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRT---ISNVR----VLK 261
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
+ D D +I GGF HYG V ND++++ G GP KR+I +R RQK
Sbjct: 262 YSKGEDAD----TINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRD----PARQKVP 313
Query: 563 HLMEIQLNGGSVADK 577
+ ++L+ S+ K
Sbjct: 314 DIDNVKLDYISLESK 328
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 133/323 (41%), Gaps = 74/323 (22%)
Query: 47 RHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINK 106
R GSM +YP+ R+ +++ +P + + PV + F G+K GMTH+ R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 107 KEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+ I VT++E PP+ ++G+ Y E G + W ++L +E ++
Sbjct: 66 QPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKELFKKI---------- 115
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP-IQ 224
K+ ++K +T A +R+I T+N KD P I
Sbjct: 116 ---TTFKEVKEKPVPETYAD-----------VRLIVATRN-------------KDVPGIP 148
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGG-SVADKIAWARQHLEQPIPVGQV 283
S KK + E+++ GG SV ++ +A HL + I
Sbjct: 149 S-----------------------KKPEIFELRIGGGNSVKERFEYATAHLGKTIRFEDF 185
Query: 284 FAQDEMIDCIGVTKGKGFKGEM--IAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 341
+ +D + VTKGKGF G + +KLL ++ +K H I G D W R +
Sbjct: 186 SKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRK-HRRMIGTLGPWHPD---WVRNTV 241
Query: 342 EQPIPVGQVFAQDEMIDCIGVTK 364
Q GQ+ Q I + V K
Sbjct: 242 PQ---AGQMGYQQRTISNVRVLK 261
>gi|110668741|ref|YP_658552.1| 50S ribosomal protein L3P [Haloquadratum walsbyi DSM 16790]
gi|121692171|sp|Q18GE9.1|RL3_HALWD RecName: Full=50S ribosomal protein L3P
gi|109626488|emb|CAJ52949.1| 50S ribosomal protein L3 [Haloquadratum walsbyi DSM 16790]
Length = 338
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 106/277 (38%), Gaps = 54/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+KR+ +++ + +D V F GYKAGMT ++ D S
Sbjct: 5 SRPRKGSMGFSPRKRAESEVPRIRSWASNDGAPGVQ--GFAGYKAGMTQVLMVNDEANSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
E VT++ETPPM V + Y +TP+G + VW R
Sbjct: 63 REGMEEAVPVTVVETPPMRAVALRAYEDTPYGSKPLTEVWGREFDTSLERTL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+D A +R+I HT L +
Sbjct: 115 -------DLPNEDTFEDDAAALRDDAETGDIDDVRLITHT------LPAGMR-------- 153
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVG 281
N+ K PD +ME ++ GG++ D++ + + +
Sbjct: 154 --NIPKKTPD-------------------VMETRVGGGTLTDRVEFGLDLISDGGEHEIS 192
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
+F E +D GVTKGKG +G + + K++ K A
Sbjct: 193 DIFRAGEYLDAAGVTKGKGTQGPVKRFGVQKRKGKHA 229
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K +ME ++ GG++ D++ + + + +F E +D GVTKGKG +G
Sbjct: 157 KKTPDVMETRVGGGTLTDRVEFGLDLISDGGEHEISDIFRAGEYLDAAGVTKGKGTQGPV 216
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
R+ +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G G
Sbjct: 217 KRFGVQKRKGKHARQGYRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIEIGNG 276
Query: 431 IH-TKDG 436
T DG
Sbjct: 277 DEPTVDG 283
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 378 KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIH 432
+ +P+KT + + G RV+F + G H ++ I+R G AG+
Sbjct: 153 RNIPKKTPD-VMETRVGGGTLTDRVEFGLDLISDGGEHEISD----IFRAGEYLDAAGVT 207
Query: 433 TKDGKVSVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELF 490
G R+ +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTEL
Sbjct: 208 KGKGTQGPVKRFGVQKRKGKHARQGYRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL- 266
Query: 491 LCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
K+ + + + + D GGF YGEV+ + +IKG GP +R++ R
Sbjct: 267 --NKRLIEIGNGDEPTVD-----------GGFVGYGEVDGPYALIKGSLPGPDQRLLRFR 313
>gi|268323275|emb|CBH36863.1| 50S ribosomal protein L3P [uncultured archaeon]
Length = 315
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK +ME Q+ GG + + +A++ L + I +F + + +D VTKGKG +G R
Sbjct: 136 KKKQEVMETQM-GGEIGKDLKYAKEMLGKEISAKDIFNEGDFVDATAVTKGKGTQGPVKR 194
Query: 375 WHT---KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W R++ KG R V IG W P RV++ V + GQ GY RTE NK+I ++G
Sbjct: 195 WGITIQNAKARRSGKG-RHVGAIGGWTPRRVRWRVPQLGQTGYQQRTEYNKRILKIG 250
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 14/101 (13%)
Query: 451 RKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYD 510
R++ KG R V IG W P RV++ V + GQ GY RTE Y ++K + +
Sbjct: 205 RRSGKG-RHVGAIGGWTPRRVRWRVPQLGQTGYQQRTE-------YNKRILKIGENGE-- 254
Query: 511 LTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
ITP GGF +YG V ND++++KG GPKKR++ L +
Sbjct: 255 ----EITPKGGFLNYGIVRNDYVLLKGSVPGPKKRLVRLSR 291
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ R ++ ++ ++ F GYKAGMTHI+ + S
Sbjct: 7 PRRGSLAFTPRKRA---RSEICRIKRETIVDGGNIQGFAGYKAGMTHIILTDNVSHSMTK 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAE 145
EI VT++ETPPM + G Y T +G ++ + +
Sbjct: 64 GMEIAIPVTVIETPPMRVEGFRLYKSTHYGKQTVTEAYND 103
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 524 HYG-----EVNNDFL----MIKGCCMGPKKRVITLRKMKLLKK-RQKKAHLMEIQLNGGS 573
HYG E ND +IK G + R+I+ K + +KK +ME Q+ GG
Sbjct: 91 HYGKQTVTEAYNDLSKIEELIKSNSTGLELRMISSTLPKAVNGVPKKKQEVMETQM-GGE 149
Query: 574 VADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+ + +A++ L + I +F + + +D VTKGKG + V
Sbjct: 150 IGKDLKYAKEMLGKEISAKDIFNEGDFVDATAVTKGKGTQGPV 192
>gi|449703558|gb|EMD43989.1| 60S ribosomal protein L3 [Entamoeba histolytica KU27]
Length = 131
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 482 GYHHRTELFLCKKKY-LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM 540
G+ RTE+ KK Y L NA T++D+TEK ITPMGGFPHYG V NDFLMIKG
Sbjct: 2 GFFKRTEV--NKKIYRLGCGDLKNAKTEFDITEKGITPMGGFPHYGVVKNDFLMIKGTVA 59
Query: 541 GPKKRVITLRK 551
G ++RVI+LRK
Sbjct: 60 GIRRRVISLRK 70
>gi|336477161|ref|YP_004616302.1| 50S ribosomal protein L3 [Methanosalsum zhilinae DSM 4017]
gi|335930542|gb|AEH61083.1| ribosomal protein L3 [Methanosalsum zhilinae DSM 4017]
Length = 337
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK LME ++G V K +A L + + +F ++D +T GKG +G R
Sbjct: 157 KKKPDLMETSISGNDVRAKFEYASSILGNEVEISDIFDSGNLVDVASITTGKGTQGPVKR 216
Query: 375 WHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
W + K + LR+V +G W P+ V + V + GQ GYH RTE NK+I +M +
Sbjct: 217 WGIQMAKHKHSRAGSLRQVGTLGPWRPAHVSWRVPQMGQMGYHQRTEYNKRILKMSS 273
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 104/260 (40%), Gaps = 52/260 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ H K + +P + +P L F GYK GMTH++ + S
Sbjct: 7 PRRGSLAFSPRKRAKSHIAKFRSWP-ESAGEP-KLQDFAGYKVGMTHVIMIDNVKNSLTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI TI+ETP + + + Y E +G + WA L + R S Q
Sbjct: 65 GTEISVPATIIETPAIRVAAIRAYAEDVYGKKPVYEAWASDLDESLSRNICLPKDYSTQN 124
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
A K S L ++ A D+R +A Y +L +N +
Sbjct: 125 ALDKIS-----GLIEEGNATDIR-VATY---------------TLPKN----------IT 153
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +PD LME ++G V K +A L + + +F
Sbjct: 154 GIPKKKPD-------------------LMETSISGNDVRAKFEYASSILGNEVEISDIFD 194
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
++D +T GKG +G +
Sbjct: 195 SGNLVDVASITTGKGTQGPV 214
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHR 486
A I T G RW + K + LR+V +G W P+ V + V + GQ GYH R
Sbjct: 202 ASITTGKGTQGPVKRWGIQMAKHKHSRAGSLRQVGTLGPWRPAHVSWRVPQMGQMGYHQR 261
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L M S+D D + P GGF +YG V+N ++++KG GP KR+
Sbjct: 262 TEY---NKRILKM------SSDAD----EVNPDGGFINYGLVSNSYILVKGSIPGPSKRL 308
Query: 547 ITLRK 551
+ LR+
Sbjct: 309 VRLRE 313
>gi|118576052|ref|YP_875795.1| 50S ribosomal protein L3 [Cenarchaeum symbiosum A]
gi|118194573|gb|ABK77491.1| ribosomal protein L3 [Cenarchaeum symbiosum A]
Length = 328
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QK+ ++ E + GGS+ ++ A+ + L + + V +D +TKGKG++GV R
Sbjct: 153 QKRPYIFEAPVRGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
K+ K+ K +R++ +G P V +TV RAGQ G+H R E NK+I +G+
Sbjct: 213 MGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGS 267
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
A I G V R K+ K+ K +R++ +G P V +TV RAGQ G+H R E
Sbjct: 198 AAITKGKGWQGVIQRMGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIE 257
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
Y ++ ++ + D +I P GG+ H+G V D++++KG G +R++
Sbjct: 258 -------YNKRIMAVGSAGEDD----AINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVK 306
Query: 549 LR-KMKLLKKRQKKAHLMEI 567
LR +++ KR K +++E+
Sbjct: 307 LRAQIRNAPKRTSKPNILEM 326
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 112/281 (39%), Gaps = 64/281 (22%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPK--DDPTKPVHLTAFIGYKAGMTHIVRE 96
HRKFS PR GS+ + P+ R+ +++ +P+ +P L A G+KAG IV
Sbjct: 2 GHRKFSQPRRGSLAYSPRGRARSMEARIRGWPERQGEP----RLLAHAGFKAGCIQIVSI 57
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFY 156
DR + K++V T+L TPP+ ++G+ R Y
Sbjct: 58 DDREHTPNAGKQLVSLGTVLVTPPLHVLGM---------------------------RGY 90
Query: 157 KNWYKSRQKAFTKASKKWQDKLGKKTIAQDL-RKMAKYCKVIRVIAHTQNQQQSLHQNQQ 215
+ R F A+DL R++AKY + + + + L +
Sbjct: 91 SKGHYGRHVKF-------------DVFAEDLPREVAKYIVLRNGRLNAERAETMLGGTAE 137
Query: 216 SHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 275
+ + P S QK+ ++ E + GGS+ ++ A+ + L
Sbjct: 138 IY--------GILGVSPRSAGLE---------QKRPYIFEAPVRGGSMKERFAYLKDLLG 180
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQK 316
+ + V +D +TKGKG++G + M +K+ K
Sbjct: 181 KTVKASDVLEPGAGVDVAAITKGKGWQGVIQRMGAKRKQHK 221
>gi|307354323|ref|YP_003895374.1| 50S ribosomal protein L3 [Methanoplanus petrolearius DSM 11571]
gi|307157556|gb|ADN36936.1| ribosomal protein L3 [Methanoplanus petrolearius DSM 11571]
Length = 337
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 52/258 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ + P+KR+ K +P + +P + GYK GMTH++ D S
Sbjct: 7 PRRGSLAYSPRKRAKSQVPKYHSWPSYN-GEPA-FQGYAGYKVGMTHVIMIDDHKNSPSE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KEI VT++E PPM ++ + Y +G ++F VW+E++ + R
Sbjct: 65 GKEISVPVTVIEIPPMKVIAIRAYTNDTYGRKAFAEVWSENIDESISRA----------- 113
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T+ KK + K+ I + + + I I +TQ +Q
Sbjct: 114 --TQIPKKHNAEEQKEKILKGIED--GFVTDIFAIMYTQPEQ------------------ 151
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
L +K LMEI++ GG ++ ++ + L + + + V
Sbjct: 152 -----------------LTGVPKKVPELMEIRIAGGDLSTRLDFGISKLGEEVEIENVAN 194
Query: 286 QDEMIDCIGVTKGKGFKG 303
+ ID VT GKG +G
Sbjct: 195 AGQYIDVTAVTTGKGTQG 212
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 300 GFKGEMIAMKLLKKRQ------KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQ 353
GF ++ A+ + Q K LMEI++ GG ++ ++ + L + + + V
Sbjct: 136 GFVTDIFAIMYTQPEQLTGVPKKVPELMEIRIAGGDLSTRLDFGISKLGEEVEIENVANA 195
Query: 354 DEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQ 411
+ ID VT GKG +G RW + RK +G +K + +G W P V++ V + GQ
Sbjct: 196 GQYIDVTAVTTGKGTQGAVKRWGIQVRKRKHSRGKKKRHIGNLGPWTPHHVRWQVPQMGQ 255
Query: 412 KGYHHRTELNKKIYRMG 428
GY RTE NK+I R+G
Sbjct: 256 MGYQQRTEFNKRILRIG 272
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 380 LPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVS 439
+P+K + L ++ G +R+ F +++ G++ N Y + T G
Sbjct: 155 VPKKVPE-LMEIRIAGGDLSTRLDFGISKLGEE-VEIENVANAGQYIDVTAVTTGKGTQG 212
Query: 440 VTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
RW + RK +G +K + +G W P V++ V + GQ GY RTE K+ L
Sbjct: 213 AVKRWGIQVRKRKHSRGKKKRHIGNLGPWTPHHVRWQVPQMGQMGYQQRTEF---NKRIL 269
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
I NN + I P GGF HYG V +++IKG GP KR+I +R
Sbjct: 270 R--IGNNP--------EEINPDGGFLHYGLVRGKYVLIKGSIPGPTKRLIRIR 312
>gi|88603499|ref|YP_503677.1| 50S ribosomal protein L3P [Methanospirillum hungatei JF-1]
gi|109893522|sp|Q2FU91.1|RL3_METHJ RecName: Full=50S ribosomal protein L3P
gi|88188961|gb|ABD41958.1| LSU ribosomal protein L3P [Methanospirillum hungatei JF-1]
Length = 337
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 107/260 (41%), Gaps = 56/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFP--KDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
PR GS+ + P+KR+ K +P + +P L F GYK GMTH++ D S
Sbjct: 7 PRMGSLAYSPRKRAKSPVPKYHAWPAYQGEPA----LQGFAGYKVGMTHVIMVDDHAHSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
K+I+ VT++E P M + + Y +G VWA+ +E RR
Sbjct: 63 NEGKDIMVPVTVIEVPDMRVAAIRVYRHDTYGNHVLTEVWADSFDKELSRRL-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
SK ++ + +K I R+ + K++ V+A T + L
Sbjct: 115 -----NLSKNYKREEAEKKI----REALEADKIVDVVALTYTRPSVL------------- 152
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
+ V K PD LME +++GGS+ ++ + L + + +
Sbjct: 153 -TGVPKKVPD-------------------LMETRIDGGSMTERFEYGLSMLGKDFDIRSL 192
Query: 284 FAQDEMIDCIGVTKGKGFKG 303
F + D +TKGKG +G
Sbjct: 193 FKVGQYTDVTAITKGKGTQG 212
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL 341
+ D+++D + +T + L +K LME +++GGS+ ++ + L
Sbjct: 131 EALEADKIVDVVALTYTR-------PSVLTGVPKKVPDLMETRIDGGSMTERFEYGLSML 183
Query: 342 EQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW--HTKKLPRKTHKGLRKVACIGAWHP 399
+ + +F + D +TKGKG +G RW H +K K R V +G W P
Sbjct: 184 GKDFDIRSLFKVGQYTDVTAITKGKGTQGPVKRWGVHLRKRKHSRGKKERHVGTLGPWTP 243
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG 428
V++ V GQ GYH RTE NK++ ++G
Sbjct: 244 HHVRWQVPMMGQMGYHQRTEFNKRLLKIG 272
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 28/206 (13%)
Query: 349 QVFAQDEMIDCIGVTKGKG--FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTV 406
+ D+++D + +T + GV KK+P L + G R ++ +
Sbjct: 131 EALEADKIVDVVALTYTRPSVLTGVP-----KKVP-----DLMETRIDGGSMTERFEYGL 180
Query: 407 ARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRW--HTKKLPRKTHKGLRKVACIG 464
+ G K + R+ Y I G RW H +K K R V +G
Sbjct: 181 SMLG-KDFDIRSLFKVGQYTDVTAITKGKGTQGPVKRWGVHLRKRKHSRGKKERHVGTLG 239
Query: 465 AWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPH 524
W P V++ V GQ GYH RTE K L + ++ A ITP GGF +
Sbjct: 240 PWTPHHVRWQVPMMGQMGYHQRTEF----NKRLLKIGEDGAE---------ITPEGGFIN 286
Query: 525 YGEVNNDFLMIKGCCMGPKKRVITLR 550
YGEV +++IKG GP KR++ +R
Sbjct: 287 YGEVRARYVLIKGSVPGPSKRLVRIR 312
>gi|20089942|ref|NP_616017.1| 50S ribosomal protein L3P [Methanosarcina acetivorans C2A]
gi|42559661|sp|Q8TRU7.1|RL3_METAC RecName: Full=50S ribosomal protein L3P
gi|19914903|gb|AAM04497.1| ribosomal protein L3p [Methanosarcina acetivorans C2A]
Length = 337
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 122/301 (40%), Gaps = 55/301 (18%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
P+ GS+ F P+KR+ H + + +P + T L +F GYK GMTH++ D S
Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQ 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VT++ETP + + + Y E G ++ VWA L E +RR ++ +
Sbjct: 65 GMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRIPIPAAGNQAE 124
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
A +++ K+ + +V V A +SL +
Sbjct: 125 AL-----------------ENIGKLIEEGRVSDVRAVIYTLPKSL--------------T 153
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
V K PD ES + + L K +++ L + V VF
Sbjct: 154 GVPKKVPDIMESGISARDL-------------------GTKFEYSKTILGTLVSVTDVFK 194
Query: 286 QDEMIDCIGVTKGKGFKGEM--IAMKLLK-KRQKKAHLMEIQLNGGSVADKIAWARQHLE 342
++D +T GKG +G + ++L+K K ++ L ++ G +++W +
Sbjct: 195 NGTLVDTAAITIGKGTQGPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMG 254
Query: 343 Q 343
Q
Sbjct: 255 Q 255
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 269 WARQ---HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAM------KLLKKRQKKAH 319
WA L++ IP+ Q E ++ IG +G ++ A+ L +K
Sbjct: 102 WAADLDPELKRRIPIPAAGNQAEALENIGKLIEEGRVSDVRAVIYTLPKSLTGVPKKVPD 161
Query: 320 LMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKK 379
+ME ++ + K +++ L + V VF ++D +T GKG +G RW +
Sbjct: 162 IMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGKGTQGPVKRWGIQL 221
Query: 380 LPRKTHK--GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
+ K + LR+V +GA++PSRV + V + GQ GYH RTE NK+I ++G+
Sbjct: 222 MKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGS 273
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 17/110 (15%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
LR+V +GA++PSRV + V + GQ GYH RTE K+ L + +D + +
Sbjct: 232 LRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEF---NKRILKI------GSDGE----EV 278
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLME 566
TP GGF +YG V D+++IKG GP KR+I LR R KKA L E
Sbjct: 279 TPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRD----PIRAKKADLGE 324
>gi|300078561|gb|ADJ67187.1| ribosomal protein L3-like protein [Jatropha curcas]
Length = 91
Score = 79.7 bits (195), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 12/88 (13%)
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKL------LK 556
+ A T+YD TEK I P+GGFPHYGEV +D++MIKGCC+G KKRV+TLR+ L L
Sbjct: 1 HTAITEYDRTEKGINPIGGFPHYGEVKDDYIMIKGCCVGTKKRVVTLRQSSLPRHLGWLW 60
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQH 584
+R + L+ +Q + +A +RQH
Sbjct: 61 RRLSSSLLIHLQ------SLDMAASRQH 82
>gi|449707094|gb|EMD46813.1| 60S ribosomal protein L3, partial [Entamoeba histolytica KU27]
Length = 119
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 504 NASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
NA T++D+TEK ITPMGGFPHYG V NDFLMIKG G ++RVI+LRK
Sbjct: 11 NAKTEFDITEKGITPMGGFPHYGVVKNDFLMIKGTVAGIRRRVISLRK 58
>gi|225438469|ref|XP_002275287.1| PREDICTED: 60S ribosomal protein L3-like [Vitis vinifera]
Length = 110
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 505 ASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHL 564
AS +TEK ITPMGGFPH G V +D+++IKGCC+GPKKRV+TLR+ LLK+ + A L
Sbjct: 19 ASLLVLMTEKDITPMGGFPHCGVVKDDYVLIKGCCVGPKKRVVTLRQ-SLLKQTSRVA-L 76
Query: 565 MEIQLNGGSVADKIAWAR 582
EI+L A K R
Sbjct: 77 EEIKLKFIDTASKFGHGR 94
>gi|21228226|ref|NP_634148.1| 50S ribosomal protein L3P [Methanosarcina mazei Go1]
gi|42559655|sp|Q8PV50.1|RL3_METMA RecName: Full=50S ribosomal protein L3P
gi|20906682|gb|AAM31820.1| LSU ribosomal protein L3P [Methanosarcina mazei Go1]
Length = 337
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 55/301 (18%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
P+ GS+ F P+KR+ H + + +P + T L +F GYK GMTH++ D S
Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQ 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VT++ETP + + V Y E G ++ WA L E +RR ++ +
Sbjct: 65 GMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRIPIPAAGNQAE 124
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+++ K+ + +V + A T +SL +
Sbjct: 125 GL-----------------ENIGKLIEEGRVSDIRAVTYTLPKSL--------------T 153
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
V K PD ES + K L K +A+ L + V VF
Sbjct: 154 GVPKKVPDIMESGISAKDL-------------------GAKFEYAKSILGNLVNVTDVFK 194
Query: 286 QDEMIDCIGVTKGKGFKGEM--IAMKLLK-KRQKKAHLMEIQLNGGSVADKIAWARQHLE 342
++D +T GKG +G + ++L K K ++ L +I G +++W +
Sbjct: 195 NGTVVDTAAITIGKGTQGPVKRWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMG 254
Query: 343 Q 343
Q
Sbjct: 255 Q 255
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 268 AWARQ---HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAM------KLLKKRQKKA 318
AWA L++ IP+ Q E ++ IG +G ++ A+ L +K
Sbjct: 101 AWAADLDSELKRRIPIPAAGNQAEGLENIGKLIEEGRVSDIRAVTYTLPKSLTGVPKKVP 160
Query: 319 HLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTK 378
+ME ++ + K +A+ L + V VF ++D +T GKG +G RW +
Sbjct: 161 DIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGKGTQGPVKRWGIQ 220
Query: 379 KLPRKTHK---GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
L + H LR++ +G+++PSRV + V + GQ GYH RTE NK+I ++G+
Sbjct: 221 -LQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGS 273
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 17/110 (15%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
LR++ +G+++PSRV + V + GQ GYH RTE K+ L + +D + +
Sbjct: 232 LRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEF---NKRILKI------GSDGE----EV 278
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLME 566
TP GGF +YG V D+++IKG GP KR+I LR R KKA L E
Sbjct: 279 TPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRD----PIRAKKADLGE 324
>gi|359417496|ref|ZP_09209636.1| 50S ribosomal protein L3P, partial [Candidatus Haloredivivus sp.
G17]
gi|358032145|gb|EHK00909.1| 50S ribosomal protein L3P [Candidatus Haloredivivus sp. G17]
Length = 328
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 15/118 (12%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ KKL KT K RK +G WHP ++ + + GQ+G+++RTE+ K+ L
Sbjct: 128 RYGIKKLSHKTQKKRRKAGNVGPWHPDQLSWRIPLPGQQGFNNRTEI---NKRIL----- 179
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQK 560
D+ + + GGF +YGEVN+++++IKG GP +R++ LR L+K +K
Sbjct: 180 -----DFGEDPEEVQKEGGFKNYGEVNSNYILIKGSVPGPSERLVRLRTA--LRKDEK 230
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 345 IPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQF 404
I VF E D + VTKGKG +G R+ KKL KT K RK +G WHP ++ +
Sbjct: 99 IEFSDVFEVGEYSDVVAVTKGKGVEGPVQRYGIKKLSHKTQKKRRKAGNVGPWHPDQLSW 158
Query: 405 TVARAGQKGYHHRTELNKKIYRMG 428
+ GQ+G+++RTE+NK+I G
Sbjct: 159 RIPLPGQQGFNNRTEINKRILDFG 182
>gi|282164890|ref|YP_003357275.1| 50S ribosomal protein L3P [Methanocella paludicola SANAE]
gi|282157204|dbj|BAI62292.1| 50S ribosomal protein L3P [Methanocella paludicola SANAE]
Length = 341
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K L+E ++ GGS+ + +A+ L + + +F E++D +TKGKG +G R
Sbjct: 156 KKVPELLENRVAGGSMDKRFEFAKSLLGKQVKPNDIFVPGELVDVSAITKGKGTQGPVKR 215
Query: 375 WHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RK + +K V +G W+P RV++ V + GQ GYH RTE NK+I ++G
Sbjct: 216 WGIAIQKRKHARTGKKRHVGNLGPWNPHRVRWQVPQLGQTGYHQRTEYNKRIIKLG 271
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 57/263 (21%)
Query: 45 APRHGSMGFYPKKRSARHRGKVKCFPK--DDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
APR GS+ + P+ R+ + K + + + D P L + +G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLAYSPRVRARSQKPKYRSWAELGDQP----KLQSLVGFKAGMSHVVMVDDRPHS 61
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKS 162
EI VTI+ETP M + G+ Y + P+G W N K
Sbjct: 62 TTEGMEISIPVTIIETPAMNVAGIRAYDDGPYGKHVLAEAWV-------------NDAKD 108
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
K F K++ D A+ KV ++ + + L ++ K +
Sbjct: 109 LAKLFRLP----------KSVDTD----AQLAKVAGLVKDGKVAELRL----LTYVKTEE 150
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
+ S + K P+ L+E ++ GGS+ + +A+ L + +
Sbjct: 151 V-SGIPKKVPE-------------------LLENRVAGGSMDKRFEFAKSLLGKQVKPND 190
Query: 283 VFAQDEMIDCIGVTKGKGFKGEM 305
+F E++D +TKGKG +G +
Sbjct: 191 IFVPGELVDVSAITKGKGTQGPV 213
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 17/107 (15%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKS-- 515
R V +G W+P RV++ V + GQ GYH RTE Y +IK L EK+
Sbjct: 232 RHVGNLGPWNPHRVRWQVPQLGQTGYHQRTE-------YNKRIIK--------LGEKAEE 276
Query: 516 ITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
+TP GGF HYG + N ++++KG GP KR++ +R K K+A
Sbjct: 277 VTPEGGFLHYGVLRNPYIVVKGSIPGPVKRMVRVRPAVRPKNMPKQA 323
>gi|410670351|ref|YP_006922722.1| 50S ribosomal protein L3P [Methanolobus psychrophilus R15]
gi|409169479|gb|AFV23354.1| 50S ribosomal protein L3P [Methanolobus psychrophilus R15]
Length = 337
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K + +ME ++G + + +A+ L I + VF ID +T GKG +G R
Sbjct: 157 KKNSDIMETAVSGSDLKARFEYAKSILGSEIKISDVFNNGTFIDVAAITIGKGTQGPVKR 216
Query: 375 WHTKKLPRKTHK--GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
W + K + LR++ +G +HP+RV + V + GQ GYH RT+ NK+I R+
Sbjct: 217 WGISMMKGKHSRQGSLRQIGTLGPFHPARVNWRVPQMGQMGYHQRTDFNKRILRV 271
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 17/113 (15%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
LR++ +G +HP+RV + V + GQ GYH RT+ K+ L + ST+ D I
Sbjct: 232 LRQIGTLGPFHPARVNWRVPQMGQMGYHQRTDF---NKRILRV------STNGD----EI 278
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
P GGF +YG V D+++IKG GP KR++ LR R K + + E QL
Sbjct: 279 NPEGGFINYGLVRGDYILIKGSIPGPSKRLVRLRD----PMRAKVSAMGEPQL 327
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 52/260 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ + P+KR+ H + +P + +P L F GYK GMTH++ D S
Sbjct: 7 PRRGSLAYSPRKRAKSHIPRFNSWP-ESAGEP-KLQDFAGYKVGMTHVILVDDVKNSLTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VT++ETP + + + Y +G ++ W+ L + + +
Sbjct: 65 GMEISVPVTVVETPAVRVAAIRAYASDSYGGKAIAEAWSSDLDPSLGKTIHLP-----KT 119
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
A T AS + L + D I+V+ +T L +N
Sbjct: 120 ATTDASLEKISSLIENGTVSD----------IKVVTYT------LPKN------------ 151
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
L +K + +ME ++G + + +A+ L I + VF
Sbjct: 152 -----------------LTGVPKKNSDIMETAVSGSDLKARFEYAKSILGSEIKISDVFN 194
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
ID +T GKG +G +
Sbjct: 195 NGTFIDVAAITIGKGTQGPV 214
>gi|296082549|emb|CBI21554.3| unnamed protein product [Vitis vinifera]
Length = 98
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 511 LTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLN 570
+TEK ITPMGGFPH G V +D+++IKGCC+GPKKRV+TLR+ L K+ + L EI+L
Sbjct: 13 VTEKDITPMGGFPHCGVVKDDYVLIKGCCVGPKKRVVTLRQS--LLKQTSRVALEEIKLK 70
Query: 571 GGSVADKIAWAR 582
A K R
Sbjct: 71 FIDTASKFGHGR 82
>gi|147856396|emb|CAN82464.1| hypothetical protein VITISV_002661 [Vitis vinifera]
Length = 286
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 512 TEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNG 571
TEK ITPMGGFPH G V +D+++IKGCC+GPKKRV+TLR+ LLK+ + A L EI+L
Sbjct: 202 TEKDITPMGGFPHCGVVKDDYVLIKGCCVGPKKRVVTLRQ-SLLKQTSRVA-LEEIKLKF 259
Query: 572 GSVADKIAWAR 582
A K R
Sbjct: 260 IDTASKFGHGR 270
>gi|377824668|gb|AFB77890.1| 60S ribosomal protein L3, partial [Alytes obstetricans]
Length = 54
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
KK+HLMEIQ+NGG++A+K+ WA + LEQ + + VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWACEKLEQQVAINGVFGQDEMIDVIGVTKGKGYK 54
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
KK+HLMEIQ+NGG++A+K+ WA + LEQ + + VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWACEKLEQQVAINGVFGQDEMIDVIGVTKGKGYK 54
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
KK+HLMEIQ+NGG++A+K+ WA + LEQ + + VF QDEMID IGVTKGKG+K
Sbjct: 1 KKSHLMEIQVNGGTIAEKVDWACEKLEQQVAINGVFGQDEMIDVIGVTKGKGYK 54
>gi|383319753|ref|YP_005380594.1| 50S ribosomal protein L3 [Methanocella conradii HZ254]
gi|379321123|gb|AFD00076.1| LSU ribosomal protein L3P [Methanocella conradii HZ254]
Length = 341
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K L+E ++ GGS+ + A+ L + + +F+ E++D +TKGKG +G R
Sbjct: 157 KKVPELVENRIAGGSMDKRFELAKSLLGKQVKANDIFSPGELVDVSAITKGKGTQGPVKR 216
Query: 375 WHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RK G R+ V +G W+P R+++ V + GQ GYH RTE NK+I ++G
Sbjct: 217 WGIAIQKRKHARTGKRRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRIIKLG 272
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 56/263 (21%)
Query: 45 APRHGSMGFYPKKRSARHRGKVKCFPK--DDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
APR GS+ + P+ R+ + K + + + + P + + IG+KAGM+H++ DRP S
Sbjct: 6 APRRGSLAYSPRVRARSQKPKYRNWAELGEQP----KIQSLIGFKAGMSHVLMIDDRPHS 61
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKS 162
EI VTI+E P M + G+ Y + P+G + WA L R
Sbjct: 62 TTEGMEIAVPVTIIEAPAMHVAGIRAYDDGPYGKKVIAEAWASDLKDLAR---------- 111
Query: 163 RQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQP 222
+ +K D G+ L K K +R++ + + +
Sbjct: 112 ----LIRLPRKAVDTDGQLAKIAGLVKEGKVAD-LRLLTYVKTED--------------- 151
Query: 223 IQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 282
S + K P+ L+E ++ GGS+ + A+ L + +
Sbjct: 152 -VSGIPKKVPE-------------------LVENRIAGGSMDKRFELAKSLLGKQVKAND 191
Query: 283 VFAQDEMIDCIGVTKGKGFKGEM 305
+F+ E++D +TKGKG +G +
Sbjct: 192 IFSPGELVDVSAITKGKGTQGPV 214
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V +G W+P R+++ V + GQ GYH RTE Y +IK + +T
Sbjct: 233 RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTE-------YNKRIIKLGDKAE------EVT 279
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
P GGF HYG + N ++++KG GP KR++ LR
Sbjct: 280 PAGGFLHYGVLRNPYIVVKGSIPGPVKRMVRLR 312
>gi|91772083|ref|YP_564775.1| 50S ribosomal protein L3P [Methanococcoides burtonii DSM 6242]
gi|121689445|sp|Q12ZV1.1|RL3_METBU RecName: Full=50S ribosomal protein L3P
gi|91711098|gb|ABE51025.1| LSU ribosomal protein L3P [Methanococcoides burtonii DSM 6242]
Length = 337
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 120/294 (40%), Gaps = 55/294 (18%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ + P+KRS H + + +P+ D +P L F GYK GMTH++ D S
Sbjct: 7 PRRGSLAYSPRKRSQSHIPRFRSWPESD-AEP-KLQGFAGYKVGMTHVIMIDDVKHSLTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VTI+ETP + + + Y + +G + W + L ++ RR K+ +
Sbjct: 65 GTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL-----KTAKN 119
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
AS + + L + A D IR+I +T +
Sbjct: 120 PDVNASLEKLETLVESGRAND----------IRLITYTLPST----------------LT 153
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
V K PD +ME ++G V K +A+ L + + VF
Sbjct: 154 GVPKKVPD-------------------VMETGVSGSDVKAKFEYAKTVLGTMVEISDVFD 194
Query: 286 QDEMIDCIGVTKGKGFKGEM--IAMKLLK-KRQKKAHLMEIQLNGGSVADKIAW 336
+++D +T G G +G + + L+K K ++ L ++ G ++W
Sbjct: 195 NGKIVDVAAITTGHGTQGPVKRWGINLMKNKHSRQGSLRQVGTLGPWTPAHVSW 248
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 421 NKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHK--GLRKVACIGAWHPSRVQFTVARA 478
N KI + A I T G RW + K + LR+V +G W P+ V + V +A
Sbjct: 195 NGKIVDVAA-ITTGHGTQGPVKRWGINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQA 253
Query: 479 GQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGC 538
GQ GYH RT+ K+ L M S+D D + P GGF +YG V ++++IKG
Sbjct: 254 GQMGYHQRTD---YNKRILKM------SSDVD----EVNPAGGFVNYGLVRGNYILIKGS 300
Query: 539 CMGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
GP KR+I LR+ R K + + E Q+
Sbjct: 301 VPGPSKRLIRLRE----PTRSKVSSIGEPQI 327
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K +ME ++G V K +A+ L + + VF +++D +T G G +G R
Sbjct: 157 KKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDVAAITTGHGTQGPVKR 216
Query: 375 WHTKKLPRKTHK--GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
W + K + LR+V +G W P+ V + V +AGQ GYH RT+ NK+I +M + +
Sbjct: 217 WGINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDV 275
>gi|2982305|gb|AAC32138.1| 60S ribosomal protein L3 [Picea mariana]
Length = 86
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 512 TEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNG 571
TEK ITPMGGFPHYG + +D++MI+GCC+G KKRV+TLR+ LLK+ + A L EI+L
Sbjct: 2 TEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQ-SLLKQTSRTA-LEEIKLKF 59
Query: 572 GSVADKIAWARQHLEQ 587
+ K R Q
Sbjct: 60 IDTSSKFGHGRFQTTQ 75
>gi|298674802|ref|YP_003726552.1| 50S ribosomal protein L3 [Methanohalobium evestigatum Z-7303]
gi|298287790|gb|ADI73756.1| ribosomal protein L3 [Methanohalobium evestigatum Z-7303]
Length = 337
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK+ +ME ++G + +K +A+ L I + VF ++D +T GKG +G R
Sbjct: 157 KKKSDIMETGVSGSDMKEKFEYAKSILGTKISITDVFNPGGIVDIAAITTGKGTQGPVKR 216
Query: 375 WHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
W + K ++ R+V +G WHP+ + + V + GQ GYH RTE NK+I ++
Sbjct: 217 WGIQIAKHKHNRAGSARQVGTLGPWHPAHISWRVPQMGQMGYHQRTEYNKRIIKV 271
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 52/260 (20%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
P GS+ + P+KR+ H K + +P D L F GYK GMTH++ D S
Sbjct: 7 PNRGSLAYSPRKRAKSHIPKFRSWPNLDGNP--KLQDFAGYKVGMTHVIMIDDTKNSVTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI T++ETP + + + Y ++ +G + WA L + R+ KS
Sbjct: 65 GAEISVPATVVETPDIGVASIRAYKDSEYGKKPVAEAWATDLDADVLRKV-----KSPDN 119
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T+ S + + L +DL RV+ +T + S
Sbjct: 120 HDTEKSLEKMESLIDDGTVKDL----------RVVTYT-------------------LPS 150
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
N L +KK+ +ME ++G + +K +A+ L I + VF
Sbjct: 151 N----------------LTGVPKKKSDIMETGVSGSDMKEKFEYAKSILGTKISITDVFN 194
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
++D +T GKG +G +
Sbjct: 195 PGGIVDIAAITTGKGTQGPV 214
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHR 486
A I T G RW + K ++ R+V +G WHP+ + + V + GQ GYH R
Sbjct: 202 AAITTGKGTQGPVKRWGIQIAKHKHNRAGSARQVGTLGPWHPAHISWRVPQMGQMGYHQR 261
Query: 487 TELFLCKKKYLSMVIK-NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
TE Y +IK +N ++ I P GGF +YG V ++++IKG GP KR
Sbjct: 262 TE-------YNKRIIKVSNEGSE-------INPDGGFLNYGLVRGNYVLIKGSVPGPSKR 307
Query: 546 VITLR 550
++ R
Sbjct: 308 LVRFR 312
>gi|452210662|ref|YP_007490776.1| LSU ribosomal protein L3e (L3p) [Methanosarcina mazei Tuc01]
gi|452100564|gb|AGF97504.1| LSU ribosomal protein L3e (L3p) [Methanosarcina mazei Tuc01]
Length = 283
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 268 AWARQ---HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAM------KLLKKRQKKA 318
AWA L++ IP+ Q E ++ IG +G ++ A+ L +K
Sbjct: 47 AWAADLDSELKRRIPIPAAGNQAEGLENIGKLIEEGRVSDIRAVTYTLPKSLTGVPKKVP 106
Query: 319 HLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTK 378
+ME ++ + K +A+ L + V VF ++D +T GKG +G RW +
Sbjct: 107 DIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGKGTQGPVKRWGIQ 166
Query: 379 KLPRKTHK---GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
L + H LR++ +G+++PSRV + V + GQ GYH RTE NK+I ++G+
Sbjct: 167 -LQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQTGYHQRTEFNKRILKIGS 219
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 17/110 (15%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
LR++ +G+++PSRV + V + GQ GYH RTE K+ L + +D + +
Sbjct: 178 LRQIGTLGSFNPSRVSWRVPQMGQTGYHQRTEF---NKRILKI------GSDGE----EV 224
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLME 566
TP GGF +YG V D+++IKG GP KR+I LR R KKA L E
Sbjct: 225 TPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRD----PIRAKKADLGE 270
>gi|374724264|gb|EHR76344.1| Ribosomal protein L3 [uncultured marine group II euryarchaeote]
Length = 336
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K S PR GSM F P+KR+ R G VK +P D ++ V + F G+KAGMTH++ P
Sbjct: 3 KKSHPRRGSMAFSPRKRANRPFGHVKSWPTTDASE-VRMQGFAGWKAGMTHVLSRDLNPR 61
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHG 135
S +E+ VT++E P M I+GV GY TP+G
Sbjct: 62 SPSAGQEVRIPVTVVECPKMRILGVRGYAMTPYG 95
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
V R+ K K K R+ +GA+ V+ ++ + GQ GYH RTE Y
Sbjct: 212 VIKRFGGKLQSHKNSKKRRQHGNMGAFGDGYVRKSIRQGGQTGYHQRTE-------YNKR 264
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+++ ++ D+ SITP GGF HYGEV +D++++KG GP KR+I R +
Sbjct: 265 IMRIASTEDH-----SITPAGGFLHYGEVKSDYILVKGSVPGPAKRLIRFRDA--TRGSD 317
Query: 560 KKAHLMEI 567
K H EI
Sbjct: 318 KTLHPFEI 325
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 320 LMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKK 379
+ME+ L+GG++ D++ +A++ L + + D + +TKG G++GV R+ K
Sbjct: 164 VMEVGLDGGNIGDQLNYAKEKLGEEY---SXXXXXXLTDIVAITKGYGWQGVIKRFGGKL 220
Query: 380 LPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
K K R+ +GA+ V+ ++ + GQ GYH RTE NK+I R+ +
Sbjct: 221 QSHKNSKKRRQHGNMGAFGDGYVRKSIRQGGQTGYHQRTEYNKRIMRIAS 270
>gi|269986342|gb|EEZ92643.1| ribosomal protein L3 [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 301
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 301 FKGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQ 353
FKG+ ++L+ Q KK + E+ + GG++ DK+ ++ L + I V
Sbjct: 110 FKGKFDDIRLIVSTQPWKIDLKKKPEVFELCI-GGNLEDKLTLGKELLSKEIEASSVIKD 168
Query: 354 DEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKG 413
+D VTKGKGF G R+ K P K RK +GA ++VQFTV + G+ G
Sbjct: 169 GNFVDVASVTKGKGFTGSVKRYGVKIYPVHASKSRRKAGNLGAESMAKVQFTVPQHGRLG 228
Query: 414 YHHRTELNKKIYRM 427
++ R E NK ++R+
Sbjct: 229 FNSRVEYNKFVFRV 242
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 94/258 (36%), Gaps = 74/258 (28%)
Query: 51 MGFYPKKRSARHR---GKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKK 107
M +YP K+S R GKV+ K++ + F GYK GM + S K
Sbjct: 1 MQYYPIKKSKRPYNTFGKVENLEKNE------IGGFAGYKVGMIQLSYIDSDKNSPTFKM 54
Query: 108 EIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAF 167
E++ T+LE+PP+ + + Y + S W + N + +RQ F
Sbjct: 55 EVITNATVLESPPLFVCALRFYNKG----SSIGESWGSGI----------NKFVARQVKF 100
Query: 168 TKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNV 227
+ +K D GK IR+I TQ + L
Sbjct: 101 KENNKSVDDFKGK-------------FDDIRLIVSTQPWKIDL----------------- 130
Query: 228 NKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQD 287
+KK + E+ + GG++ DK+ ++ L + I V
Sbjct: 131 --------------------KKKPEVFELCI-GGNLEDKLTLGKELLSKEIEASSVIKDG 169
Query: 288 EMIDCIGVTKGKGFKGEM 305
+D VTKGKGF G +
Sbjct: 170 NFVDVASVTKGKGFTGSV 187
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
R+ K P K RK +GA ++VQFTV + G+ G++ R E K++ VIK
Sbjct: 189 RYGVKIYPVHASKSRRKAGNLGAESMAKVQFTVPQHGRLGFNSRVEY----NKFVFRVIK 244
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
D E +I G+ YG V +++KG G R+I LRK
Sbjct: 245 -------DADEVNIP--SGYKRYGNVKGSAIILKGSVPGSASRLIMLRK 284
>gi|149390973|gb|ABR25504.1| 60S ribosomal protein l3 [Oryza sativa Indica Group]
Length = 82
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 515 SITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSV 574
ITPMGGFPHYG V D+LMIKGCC+GPKKRV+TLR+ LLK+ + A L EI+L
Sbjct: 1 DITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQ-SLLKQTSRLA-LEEIKLKFIDT 58
Query: 575 ADKIAWAR 582
+ K R
Sbjct: 59 SSKFGHGR 66
>gi|424812829|ref|ZP_18238069.1| ribosomal protein L3 [Candidatus Nanosalinarum sp. J07AB56]
gi|339757051|gb|EGQ40634.1| ribosomal protein L3 [Candidatus Nanosalinarum sp. J07AB56]
Length = 323
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 295 VTKGKGFKGEMIAMKLL--KKRQKKAHLMEIQLN-----GGSVADKIAWARQHLEQPIPV 347
+ + K GE+ ++LL + Q H + N GG ++ A + I
Sbjct: 124 IEEAKEETGEIDEVRLLVHTQPQMTGHGHPVPANFETGLGGDTEQQLEAAENLIGTQISP 183
Query: 348 GQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVA 407
V + + D + VTKGKG +G R KL KT K RK +G WHP + + +
Sbjct: 184 QDVLDEGQYTDAVAVTKGKGMEGPVKRHGVTKLGHKTQKKRRKAGNVGPWHPDTLSWKIP 243
Query: 408 RAGQKGYHHRTELNKKIYRMG 428
GQ+G+H+RTE+NK+I+ +G
Sbjct: 244 LPGQEGFHNRTEINKRIFDIG 264
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 420 LNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAG 479
L++ Y + G R KL KT K RK +G WHP + + + G
Sbjct: 187 LDEGQYTDAVAVTKGKGMEGPVKRHGVTKLGHKTQKKRRKAGNVGPWHPDTLSWKIPLPG 246
Query: 480 QKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
Q+G+H+RTE+ K + + N D GG+ HYGE+ + ++++KG
Sbjct: 247 QEGFHNRTEI----NKRIFDIGDNPERAQRD---------GGYKHYGELESGYILVKGSV 293
Query: 540 MGPKKRVITLRK 551
G KR++ LR+
Sbjct: 294 PGTTKRLVRLRQ 305
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 105/286 (36%), Gaps = 67/286 (23%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
+ PR GS+G+ PK R+ R + +P+ P+ F YKAGMT ++ D G+
Sbjct: 4 VNVPRSGSLGYKPKVRADRVYPDIDNWPEAGEPTPLD---FPAYKAGMTRVLHVDDTEGA 60
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLRSFKTVWAEHLSQECRRRFYKNWYK 161
+E+ VT+LE PP + G Y P HG + W E S E +R
Sbjct: 61 -TQGQEVATPVTVLEAPPARVYGARFYTYDPNHGKQVMTEAWTESPSPELQR-------- 111
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
T K G ++ ++ +R++ HTQ Q
Sbjct: 112 -----ATDIPKN-----GNLDNIEEAKEETGEIDEVRLLVHTQPQMTG---------HGH 152
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
P+ +N E L GG ++ A + I
Sbjct: 153 PVPAN---------------------------FETGL-GGDTEQQLEAAENLIGTQISPQ 184
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM-------IAMKLLKKRQKKAHL 320
V + + D + VTKGKG +G + + K KKR+K ++
Sbjct: 185 DVLDEGQYTDAVAVTKGKGMEGPVKRHGVTKLGHKTQKKRRKAGNV 230
>gi|342906226|gb|AEL79396.1| ribosomal protein L3e [Rhodnius prolixus]
Length = 87
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 520 GGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIA 579
GGFPHYGEVNNDF+MIKGCC+GPKKRVITLRK L+ K+ L +I L + K
Sbjct: 1 GGFPHYGEVNNDFIMIKGCCVGPKKRVITLRKSLLV--HTKRVALEKINLKFIDTSSKFG 58
Query: 580 WAR 582
R
Sbjct: 59 HGR 61
>gi|435852138|ref|YP_007313724.1| archaeal ribosomal protein L3 [Methanomethylovorans hollandica DSM
15978]
gi|433662768|gb|AGB50194.1| archaeal ribosomal protein L3 [Methanomethylovorans hollandica DSM
15978]
Length = 337
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K A +ME ++G + DK +A+ L + + + VF ++D +T GKG +G R
Sbjct: 157 KKNADIMETGISGANSKDKYEYAKSILGKEVRISDVFKGGSLVDVAAITIGKGTQGPVKR 216
Query: 375 WHT--KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W +K LR++ +G + P+ V + V + GQ G+H RTE NK+I+++G
Sbjct: 217 WGIMLQKGKHSRQGSLRQIGTLGPFRPAHVNWRVPQMGQTGFHQRTECNKRIFKIG 272
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 13/95 (13%)
Query: 457 LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516
LR++ +G + P+ V + V + GQ G+H RTE C K+ + + I
Sbjct: 232 LRQIGTLGPFRPAHVNWRVPQMGQTGFHQRTE---CNKRIFKI----------GTNPEEI 278
Query: 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
P+GGF ++G V ND+++IKG GP KR+I LR+
Sbjct: 279 NPVGGFTNFGLVRNDYVLIKGSVPGPSKRLIRLRE 313
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 104/262 (39%), Gaps = 56/262 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + + +P D + + F GYK GMTH+V D S
Sbjct: 7 PRRGSLAFSPRKRAQSPIPRYRSWPVSDAG--IKIQDFAGYKVGMTHVVIIDDTKNSLTE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
EI VT++ETP + + + Y + G R+ W + L + K K
Sbjct: 65 GLEITVPVTVIETPAIRVAAIRAYGKDTVGERALAEAWTKELDTSLAQTI-----KVPLK 119
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKV--IRVIAHTQNQQQSLHQNQQSHTKDQPI 223
T A+ LGK + ++ KV IRV+ +T
Sbjct: 120 HDTNAA------LGK------IEQLMNEGKVSDIRVVTYT-------------------- 147
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
+ + +K A +ME ++G + DK +A+ L + + + V
Sbjct: 148 ---------------LPKSITGVPKKNADIMETGISGANSKDKYEYAKSILGKEVRISDV 192
Query: 284 FAQDEMIDCIGVTKGKGFKGEM 305
F ++D +T GKG +G +
Sbjct: 193 FKGGSLVDVAAITIGKGTQGPV 214
>gi|355571383|ref|ZP_09042635.1| ribosomal protein L3 [Methanolinea tarda NOBI-1]
gi|354825771|gb|EHF09993.1| ribosomal protein L3 [Methanolinea tarda NOBI-1]
Length = 337
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 56/266 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFP--KDDPTKPVHLTAFIGYKAGMTHIVREADR 99
K + PR GS+ F P+KR+ + + +P + DP L F GYK GMTH++ D
Sbjct: 3 KINQPRKGSLAFSPRKRAKSPVPRYQSWPSYQGDPV----LQGFAGYKVGMTHVIMVDDH 58
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
S K+I+ VT++E PPM + + Y +G VWA L + +R
Sbjct: 59 KNSPTEGKDIMVPVTVVEIPPMKVAAIRAYSRDTYGRHPLTEVWAGELDKALGKRI---- 114
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
++ F+ A + +D + K +A++ I + HT Q
Sbjct: 115 TLPKEYDFSGAMEALKDAIA-KGVAEE----------IFAVMHTLPGQ------------ 151
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
S V K P+ +MEI++ GG+V + + L + +
Sbjct: 152 ----VSGVPKKVPE-------------------IMEIRVAGGTVQQRFEFIAGLLGKEVH 188
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEM 305
+ + D VT GKG +G +
Sbjct: 189 LKNIIQPGAYADITAVTTGKGTQGPV 214
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K +MEI++ GG+V + + L + + + + D VT GKG +G R
Sbjct: 157 KKVPEIMEIRVAGGTVQQRFEFIAGLLGKEVHLKNIIQPGAYADITAVTTGKGTQGPVKR 216
Query: 375 WHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K RK +G +K V +G W+P V++ V + GQ G+ RTE NK+I ++G
Sbjct: 217 WGIKLRKRKHARGGKKRHVGNLGPWNPHHVRWQVPQMGQMGFQQRTEFNKRILKIG 272
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 401 RVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRK- 459
R +F G++ H + + Y + T G RW K RK +G +K
Sbjct: 175 RFEFIAGLLGKE-VHLKNIIQPGAYADITAVTTGKGTQGPVKRWGIKLRKRKHARGGKKR 233
Query: 460 -VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITP 518
V +G W+P V++ V + GQ G+ RTE + ++K + D I P
Sbjct: 234 HVGNLGPWNPHHVRWQVPQMGQMGFQQRTE-------FNKRILKIGENGD------EICP 280
Query: 519 MGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
GGF HYG + N +++IKG GP KR++ +R
Sbjct: 281 AGGFLHYGMLRNPYVLIKGSIPGPVKRLVRIR 312
>gi|405962067|gb|EKC27775.1| 60S ribosomal protein L3 [Crassostrea gigas]
Length = 85
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 519 MGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
MGGFPHYGEVN DF+MIKGCCMG KKRVITLRK LL +KKA
Sbjct: 1 MGGFPHYGEVNQDFVMIKGCCMGSKKRVITLRK-SLLATFRKKA 43
>gi|167043662|gb|ABZ08355.1| hypothetical protein ALOHA_HF4000APKG2O16ctg10g1, partial
[uncultured marine crenarchaeote HF4000_APKG2O16]
Length = 106
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HR+ SAPR GS+ + P+ R+ +++ +PK + +P L A G+KAG IV DR
Sbjct: 3 HRRHSAPRRGSLAYLPRGRAKSMEARIRAWPKVNSDEP-KLLAHAGFKAGCVQIVNIDDR 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHG 135
+ + K++V T++ TPP++I G+ GY + P G
Sbjct: 62 EKTPNHGKQLVSLGTVIVTPPILIAGIRGYSKDPDG 97
>gi|395644916|ref|ZP_10432776.1| ribosomal protein L3 [Methanofollis liminatans DSM 4140]
gi|395441656|gb|EJG06413.1| ribosomal protein L3 [Methanofollis liminatans DSM 4140]
Length = 337
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 56/262 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFP--KDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
PR GS+ + P+KR+ K + +P K +P L GYK GMTH++ D S
Sbjct: 7 PRRGSLAYSPRKRAKSQVPKYQSWPEHKGEPV----LQGIAGYKVGMTHVIMVDDHKSSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
+EI+ VT++E P M + V YV +G VWAE L +R
Sbjct: 63 TEGREIMVPVTVVEVPKMRVAAVRAYVTDSYGRHPLTEVWAEELDPLLAKRV-------- 114
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
K D ++ + ++R+ +V ++A L Q + T P
Sbjct: 115 ------TLPKEHD---REAVLGEIRERLAAGQVSDIVA--------LVYTQPAATTGVP- 156
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283
+K LME +++G S+ A L + I +
Sbjct: 157 ------------------------KKVPELMETRIDGTSIEGCFDLATSLLGKEIDPLSL 192
Query: 284 FAQDEMIDCIGVTKGKGFKGEM 305
++ + +D +TKGKG +G +
Sbjct: 193 VSEGQYVDVTAITKGKGTQGAV 214
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K LME +++G S+ A L + I + ++ + +D +TKGKG +G R
Sbjct: 157 KKVPELMETRIDGTSIEGCFDLATSLLGKEIDPLSLVSEGQYVDVTAITKGKGTQGAVKR 216
Query: 375 WHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W + RK +G +K + +G W+P V++ V + GQ GY RTE NK+I ++G
Sbjct: 217 WGIQVRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQLGYQQRTEFNKRILKVG 272
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCK 493
G RW + RK +G +K + +G W+P V++ V + GQ GY RTE
Sbjct: 209 GTQGAVKRWGIQVRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQLGYQQRTEF---N 265
Query: 494 KKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
K+ L + TD +I P GGF HYG V N ++MIKG GP KR+I +R
Sbjct: 266 KRILKV------GTD----GPAIVPEGGFLHYGIVRNSYIMIKGSIPGPAKRLIRIR 312
>gi|219842416|gb|ACL37999.1| ribosomal protein L3 [Ochlerotatus taeniorhynchus]
Length = 99
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 519 MGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKI 578
MGGFP YGE+NNDFLMIKGCC+G K+R+ITLRK L+ K+A L +I L + K+
Sbjct: 1 MGGFPFYGEINNDFLMIKGCCIGAKRRIITLRKSLLV--HPKRASLEQINLKFIDPSSKM 58
Query: 579 AWAR 582
R
Sbjct: 59 GHGR 62
>gi|13183030|gb|AAK15033.1| ribosomal protein L3 [Bos taurus]
Length = 43
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 506 STDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
STDYDL++KSI P+GGF HYGEV NDF+M+KGC +G V+T
Sbjct: 1 STDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTXXXVLT 43
>gi|374630590|ref|ZP_09702975.1| LSU ribosomal protein L3P [Methanoplanus limicola DSM 2279]
gi|373908703|gb|EHQ36807.1| LSU ribosomal protein L3P [Methanoplanus limicola DSM 2279]
Length = 337
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ + P+KR+ K + + ++ +P L F GYK GMTHIV D S
Sbjct: 7 PRRGSLAYSPRKRAKSQVPKYQSW-QECAGEP-KLQGFAGYKVGMTHIVMVDDHKNSPSE 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRF 155
KEI VTI+E PP+ + V Y + +G + F VWA+ L + + R
Sbjct: 65 GKEIAVPVTIVEIPPIKAMAVRAYTKDTYGKKVFAEVWADELDGKLKDRI 114
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K +ME+++ GG + A + + + + + ID VT GKG G R
Sbjct: 157 KKVPDMMEMRVGGGDIKACFDHAIGLFGREVELEDIAGVGQYIDVTAVTTGKGTNGPVKR 216
Query: 375 WHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W RK +G +K + +G W P V++ V + GQ GY RTE NK+I ++G
Sbjct: 217 WGIPVRKRKHSRGKKKRHIGNLGPWTPHHVRWQVPQIGQMGYQQRTEFNKRILKVG 272
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 431 IHTKDGKVSVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVQFTVARAGQKGYHHRTE 488
+ T G RW RK +G +K + +G W P V++ V + GQ GY RTE
Sbjct: 204 VTTGKGTNGPVKRWGIPVRKRKHSRGKKKRHIGNLGPWTPHHVRWQVPQIGQMGYQQRTE 263
Query: 489 LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVIT 548
K+ L + +N + I P GGF HYG V ++ IKG GP KR+I
Sbjct: 264 F---NKRILK--VGDNP--------EEINPAGGFLHYGLVRGRYIAIKGSIPGPTKRLIR 310
Query: 549 LR 550
+R
Sbjct: 311 IR 312
>gi|285025766|gb|ADC33744.1| ribosomal protein L3 [Pelodytes punctatus]
gi|285025768|gb|ADC33745.1| ribosomal protein L3 [Pelodytes punctatus]
gi|285025770|gb|ADC33746.1| ribosomal protein L3 [Pelodytes punctatus]
gi|285025772|gb|ADC33747.1| ribosomal protein L3 [Pelodytes punctatus]
gi|285025774|gb|ADC33748.1| ribosomal protein L3 [Pelodytes ibericus]
gi|285025776|gb|ADC33749.1| ribosomal protein L3 [Pelodytes punctatus]
gi|285025778|gb|ADC33750.1| ribosomal protein L3 [Pelodytes ibericus]
gi|285025780|gb|ADC33751.1| ribosomal protein L3 [Pelodytes punctatus]
gi|285025782|gb|ADC33752.1| ribosomal protein L3 [Pelodytes punctatus]
Length = 45
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 258 LNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
+NGG++++K+ WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 VNGGTISEKVDWAREKLEQQVAVNGVFGQDEMIDVIGVTKGKGYK 45
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 325 LNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
+NGG++++K+ WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 VNGGTISEKVDWAREKLEQQVAVNGVFGQDEMIDVIGVTKGKGYK 45
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 569 LNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+NGG++++K+ WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 VNGGTISEKVDWAREKLEQQVAVNGVFGQDEMIDVIGVTKGKGYK 45
>gi|119630151|gb|EAX09746.1| hCG1794419, isoform CRA_b [Homo sapiens]
Length = 112
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 135 GLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTI 183
GLR+FK ++AEH++ EC+R F N +KSR+KAFTK KKWQD+ GKK +
Sbjct: 1 GLRTFKAIFAEHINDECKRCFSNNRHKSRKKAFTKYCKKWQDEDGKKQL 49
>gi|119602066|gb|EAW81660.1| hCG22885, isoform CRA_a [Homo sapiens]
Length = 97
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 7/56 (12%)
Query: 471 VQFTVARAGQKGYHHRTE----LFLCKKKYL---SMVIKNNASTDYDLTEKSITPM 519
++F+VARAGQKGYHHRTE ++ + YL +IKNNASTDYDL++KSI P+
Sbjct: 28 IKFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPL 83
Score = 60.5 bits (145), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 402 VQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
++F+VARAGQKGYHHRTE+NKKIY++G G KDGK+
Sbjct: 28 IKFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKL 64
>gi|119580716|gb|EAW60312.1| ribosomal protein L3, isoform CRA_c [Homo sapiens]
Length = 91
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 520 GGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQL 569
GGF HYGEV NDF+M+KGC +G KKRV+TLRK L++ +++ ++++
Sbjct: 6 GGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKF 55
>gi|404325688|gb|AFR58604.1| ribosomal protein L3, partial [Osornophryne bufoniformis]
Length = 34
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 27/34 (79%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WARQ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARQKLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 27/34 (79%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WARQ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARQKLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 27/34 (79%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WARQ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARQKLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
>gi|285025789|gb|ADC33753.1| ribosomal protein L3 [Rhinella marina]
gi|285025791|gb|ADC33754.1| ribosomal protein L3 [Rhinella marina]
gi|285025793|gb|ADC33755.1| ribosomal protein L3 [Rhinella marina]
gi|285025795|gb|ADC33756.1| ribosomal protein L3 [Rhinella marina]
gi|285025797|gb|ADC33757.1| ribosomal protein L3 [Rhinella marina]
gi|285025799|gb|ADC33758.1| ribosomal protein L3 [Rhinella marina]
gi|285025801|gb|ADC33759.1| ribosomal protein L3 [Rhinella marina]
gi|285025803|gb|ADC33760.1| ribosomal protein L3 [Rhinella marina]
gi|347944020|gb|AEP27778.1| ribosomal protein L3 [Rhinella marina]
gi|347944022|gb|AEP27779.1| ribosomal protein L3 [Rhinella marina]
gi|347944024|gb|AEP27780.1| ribosomal protein L3 [Rhinella marina]
gi|347944026|gb|AEP27781.1| ribosomal protein L3 [Rhinella marina]
gi|347944028|gb|AEP27782.1| ribosomal protein L3 [Rhinella marina]
gi|347944030|gb|AEP27783.1| ribosomal protein L3 [Rhinella marina]
gi|347944032|gb|AEP27784.1| ribosomal protein L3 [Rhinella marina]
gi|347944034|gb|AEP27785.1| ribosomal protein L3 [Rhinella marina]
gi|347944036|gb|AEP27786.1| ribosomal protein L3 [Rhinella marina]
gi|347944038|gb|AEP27787.1| ribosomal protein L3 [Rhinella marina]
gi|347944040|gb|AEP27788.1| ribosomal protein L3 [Rhinella marina]
gi|347944042|gb|AEP27789.1| ribosomal protein L3 [Rhinella marina]
gi|347944044|gb|AEP27790.1| ribosomal protein L3 [Rhinella marina]
gi|347944046|gb|AEP27791.1| ribosomal protein L3 [Rhinella marina]
gi|347944048|gb|AEP27792.1| ribosomal protein L3 [Rhinella marina]
gi|347944050|gb|AEP27793.1| ribosomal protein L3 [Rhinella marina]
gi|347944052|gb|AEP27794.1| ribosomal protein L3 [Rhinella marina]
gi|347944054|gb|AEP27795.1| ribosomal protein L3 [Rhinella marina]
gi|347944056|gb|AEP27796.1| ribosomal protein L3 [Rhinella marina]
gi|347944058|gb|AEP27797.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944060|gb|AEP27798.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944062|gb|AEP27799.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944064|gb|AEP27800.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944066|gb|AEP27801.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944068|gb|AEP27802.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944072|gb|AEP27804.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944074|gb|AEP27805.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944076|gb|AEP27806.1| ribosomal protein L3 [Rhinella schneideri]
gi|347944080|gb|AEP27808.1| ribosomal protein L3 [Rhinella arenarum]
gi|404325674|gb|AFR58597.1| ribosomal protein L3, partial [Osornophryne guacamayo]
gi|404325678|gb|AFR58599.1| ribosomal protein L3, partial [Osornophryne sumacoensis]
gi|404325680|gb|AFR58600.1| ribosomal protein L3, partial [Osornophryne sumacoensis]
gi|404325682|gb|AFR58601.1| ribosomal protein L3, partial [Osornophryne cofanorum]
gi|404325690|gb|AFR58605.1| ribosomal protein L3, partial [Osornophryne puruanta]
gi|404325692|gb|AFR58606.1| ribosomal protein L3, partial [Osornophryne puruanta]
gi|404325694|gb|AFR58607.1| ribosomal protein L3, partial [Osornophryne guacamayo]
gi|404325696|gb|AFR58608.1| ribosomal protein L3, partial [Osornophryne guacamayo]
gi|404325700|gb|AFR58610.1| ribosomal protein L3, partial [Osornophryne guacamayo]
gi|404325702|gb|AFR58611.1| ribosomal protein L3, partial [Osornophryne antisana]
gi|404325704|gb|AFR58612.1| ribosomal protein L3, partial [Osornophryne antisana]
gi|404325706|gb|AFR58613.1| ribosomal protein L3, partial [Osornophryne antisana]
gi|404325708|gb|AFR58614.1| ribosomal protein L3, partial [Osornophryne sumacoensis]
gi|404325710|gb|AFR58615.1| ribosomal protein L3, partial [Osornophryne guacamayo]
gi|404325712|gb|AFR58616.1| ribosomal protein L3, partial [Osornophryne occidentalis]
gi|404325714|gb|AFR58617.1| ribosomal protein L3, partial [Osornophryne occidentalis]
gi|404325716|gb|AFR58618.1| ribosomal protein L3, partial [Osornophryne bufoniformis]
gi|404325718|gb|AFR58619.1| ribosomal protein L3, partial [Osornophryne antisana]
gi|404325720|gb|AFR58620.1| ribosomal protein L3, partial [Osornophryne guacamayo]
gi|404325722|gb|AFR58621.1| ribosomal protein L3, partial [Osornophryne guacamayo]
gi|404325726|gb|AFR58623.1| ribosomal protein L3, partial [Osornophryne antisana]
gi|428676598|gb|AFZ45979.1| ribosomal protein L3, partial [Rhinella marina]
gi|428676600|gb|AFZ45980.1| ribosomal protein L3, partial [Rhinella marina]
gi|428676602|gb|AFZ45981.1| ribosomal protein L3, partial [Rhinella marina]
Length = 34
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
>gi|404325730|gb|AFR58624.1| ribosomal protein L3, partial [Atelopus sp. 3 DPM-2011]
gi|404325734|gb|AFR58626.1| ribosomal protein L3, partial [Atelopus sp. 1 DPM-2011]
Length = 34
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVFGQDEMIDIIGVTKGKGYK 34
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVFGQDEMIDIIGVTKGKGYK 34
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WAR+ LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVFGQDEMIDIIGVTKGKGYK 34
>gi|404325698|gb|AFR58609.1| ribosomal protein L3, partial [Osornophryne bufoniformis]
Length = 34
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WAR++LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARENLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WAR++LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARENLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WAR++LEQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARENLEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
>gi|404325724|gb|AFR58622.1| ribosomal protein L3, partial [Osornophryne antisana]
Length = 34
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WAR+ LEQ + V VF QDEMID +GVTKGKG+K
Sbjct: 1 WAREKLEQQVTVSGVFGQDEMIDVMGVTKGKGYK 34
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WAR+ LEQ + V VF QDEMID +GVTKGKG+K
Sbjct: 1 WAREKLEQQVTVSGVFGQDEMIDVMGVTKGKGYK 34
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WAR+ LEQ + V VF QDEMID +GVTKGKG+K
Sbjct: 1 WAREKLEQQVTVSGVFGQDEMIDVMGVTKGKGYK 34
>gi|449708198|gb|EMD47703.1| 60S ribosomal protein L3, partial [Entamoeba histolytica KU27]
Length = 56
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 121 MVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQD 176
MV+ G +GY +T GL+ V+AEH++ E +RR+ K WYK+ + F ++K+ D
Sbjct: 1 MVVAGFVGYKKTTTGLKPITAVFAEHIADEFKRRYTKKWYKNTKNQFAVHTEKYND 56
>gi|404325676|gb|AFR58598.1| ribosomal protein L3, partial [Osornophryne bufoniformis]
Length = 34
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WARQ EQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARQKQEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WARQ EQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARQKQEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WARQ EQ + V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARQKQEQQVAVSGVFGQDEMIDVIGVTKGKGYK 34
>gi|451980683|ref|ZP_21929069.1| 50S ribosomal protein L3 [Nitrospina gracilis 3/211]
gi|451762019|emb|CCQ90308.1| 50S ribosomal protein L3 [Nitrospina gracilis 3/211]
Length = 212
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 334 IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLP--RKTHKGLRKV 391
+ A + Q + V VFA+ E++D +GV+KG+GF GV R++ + P R TH+ R
Sbjct: 85 LELADDAMGQQLKV-DVFAEGELVDVVGVSKGRGFSGVVRRYNFRGQPASRGTHESFRGG 143
Query: 392 ACIGA-WHPSRV---QFTVARAGQKGYHHRTELNKKIYRMGAG 430
IG +P R Q R G K H + N K+ R+ AG
Sbjct: 144 GSIGMHTYPGRTLKGQKMAGRMGGKTVHAK---NLKVVRVDAG 183
>gi|404325686|gb|AFR58603.1| ribosomal protein L3, partial [Osornophryne cofanorum]
Length = 34
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WAR+ LEQ V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQGAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WAR+ LEQ V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQGAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WAR+ LEQ V VF QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQGAVSGVFGQDEMIDVIGVTKGKGYK 34
>gi|404325684|gb|AFR58602.1| ribosomal protein L3, partial [Osornophryne cofanorum]
Length = 34
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 25/34 (73%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WAR LEQ V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARGKLEQQGAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 25/34 (73%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WAR LEQ V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARGKLEQQGAVSGVFGQDEMIDVIGVTKGKGYK 34
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 25/34 (73%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WAR LEQ V VF QDEMID IGVTKGKG+K
Sbjct: 1 WARGKLEQQGAVSGVFGQDEMIDVIGVTKGKGYK 34
>gi|347944070|gb|AEP27803.1| ribosomal protein L3 [Rhinella schneideri]
Length = 34
Score = 50.1 bits (118), Expect = 0.003, Method: Composition-based stats.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 269 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 302
WAR+ LEQ + V V QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVLGQDEMIDVIGVTKGKGYK 34
Score = 50.1 bits (118), Expect = 0.003, Method: Composition-based stats.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 336 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 369
WAR+ LEQ + V V QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVLGQDEMIDVIGVTKGKGYK 34
Score = 50.1 bits (118), Expect = 0.003, Method: Composition-based stats.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 580 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK 613
WAR+ LEQ + V V QDEMID IGVTKGKG+K
Sbjct: 1 WAREKLEQQVAVSGVLGQDEMIDVIGVTKGKGYK 34
>gi|383449889|ref|YP_005356610.1| 50S ribosomal protein L3 [Flavobacterium indicum GPTSA100-9]
gi|380501511|emb|CCG52553.1| 50S ribosomal protein L3 [Flavobacterium indicum GPTSA100-9]
Length = 205
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 328 GSVADKIAWARQHLEQPIPVGQV-----FAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPR 382
G+VA K Q E +G V FA+ E +D +GV+KGKGF+GV R + +
Sbjct: 72 GTVAKKKVVEFQGFETEYKLGDVINVDLFAEGEFVDVLGVSKGKGFQGVVKRHGFGGVGQ 131
Query: 383 KT---HKGLRKVACIGA-WHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
T H LR +GA +PSRV + AG+ G + T N ++ ++
Sbjct: 132 ATHGQHNRLRAPGSVGASSYPSRVFKGMRMAGRTGGENVTVQNLRVLKV 180
>gi|145497859|ref|XP_001434918.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402046|emb|CAK67521.1| unnamed protein product [Paramecium tetraurelia]
Length = 44
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLT 81
SHRKF APRHG++GF P+KR+ HRG+++ F T + T
Sbjct: 2 SHRKFEAPRHGNLGFTPRKRTKHHRGRIRDFSLQKTTNHLQFT 44
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 10 SHRKFSAPRHGSMGFYPKKRSARHR 34
SHRKF APRHG++GF P+KR+ HR
Sbjct: 2 SHRKFEAPRHGNLGFTPRKRTKHHR 26
>gi|220913432|ref|YP_002488741.1| 50S ribosomal protein L3 [Arthrobacter chlorophenolicus A6]
gi|254803650|sp|B8HD06.1|RL3_ARTCA RecName: Full=50S ribosomal protein L3
gi|219860310|gb|ACL40652.1| ribosomal protein L3 [Arthrobacter chlorophenolicus A6]
Length = 216
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR--WHTKKLPRKTHKGLRKVACI 394
A L Q + V ++FA + ID IG TKGKGF GV R +H HK RK I
Sbjct: 94 AEYELGQELSV-ELFAAGQKIDVIGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSI 152
Query: 395 -GAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
GA PSRV + AG+ G T LN ++ + A
Sbjct: 153 GGASTPSRVFKGMKMAGRMGAVRHTTLNLTVHAVDA 188
>gi|340621220|ref|YP_004739671.1| 50S ribosomal protein L3 [Capnocytophaga canimorsus Cc5]
gi|339901485|gb|AEK22564.1| 50S ribosomal protein L3 [Capnocytophaga canimorsus Cc5]
Length = 205
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG-----QVFAQDEMIDCIGVTKGKGF 368
R KA L + G SV K+ Q E+ +G ++F++ E +D G++KGKGF
Sbjct: 59 RANKAELGHFKKAGSSVKKKVVEF-QGFEKEYKIGDAISVELFSEGEFVDITGISKGKGF 117
Query: 369 KGVTSRWHTKKLPRKT---HKGLRKVACIGA-WHPSRVQFTVARAGQKGYHHRTELNKKI 424
+GV R + + T H LR IGA +PSRV + AG+ G T N K+
Sbjct: 118 QGVVKRHGFGGVGQSTHGQHNRLRAPGSIGASSYPSRVFKGMRMAGRMGAEKVTVQNLKV 177
Query: 425 YRM 427
++
Sbjct: 178 LKV 180
>gi|415704819|ref|ZP_11460090.1| 50S ribosomal protein L3 [Gardnerella vaginalis 75712]
gi|388051541|gb|EIK74565.1| 50S ribosomal protein L3 [Gardnerella vaginalis 75712]
Length = 216
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 349 QVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRK--THKGLRKVACIGAWH-PSRVQFT 405
+VFA+ +D G TKGKGF G RW K R +HK R+ +GA PSR+
Sbjct: 105 EVFAEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
Query: 406 VARAGQKGYHHRTELNKKI 424
AG+ G+ T LN I
Sbjct: 165 KRMAGRMGHVTSTALNLTI 183
>gi|308235496|ref|ZP_07666233.1| 50S ribosomal protein L3 [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311115167|ref|YP_003986388.1| 50S ribosomal protein L3 [Gardnerella vaginalis ATCC 14019]
gi|385801209|ref|YP_005837612.1| 50S ribosomal protein L3 [Gardnerella vaginalis HMP9231]
gi|415703879|ref|ZP_11459630.1| 50S ribosomal protein L3 [Gardnerella vaginalis 284V]
gi|415705944|ref|ZP_11461083.1| 50S ribosomal protein L3 [Gardnerella vaginalis 0288E]
gi|415712837|ref|ZP_11464995.1| 50S ribosomal protein L3 [Gardnerella vaginalis 55152]
gi|415715251|ref|ZP_11465805.1| 50S ribosomal protein L3 [Gardnerella vaginalis 1400E]
gi|415721805|ref|ZP_11468738.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703Bmash]
gi|415725189|ref|ZP_11470192.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703C2mash]
gi|417557052|ref|ZP_12208104.1| 50S ribosomal protein L3 [Gardnerella vaginalis 315-A]
gi|310946661|gb|ADP39365.1| 50S ribosomal protein L3 [Gardnerella vaginalis ATCC 14019]
gi|333393969|gb|AEF31887.1| 50S ribosomal protein L3 [Gardnerella vaginalis HMP9231]
gi|333601693|gb|EGL13133.1| 50S ribosomal protein L3 [Gardnerella vaginalis 315-A]
gi|388051185|gb|EIK74210.1| 50S ribosomal protein L3 [Gardnerella vaginalis 284V]
gi|388055369|gb|EIK78282.1| 50S ribosomal protein L3 [Gardnerella vaginalis 0288E]
gi|388056734|gb|EIK79593.1| 50S ribosomal protein L3 [Gardnerella vaginalis 55152]
gi|388058642|gb|EIK81430.1| 50S ribosomal protein L3 [Gardnerella vaginalis 1400E]
gi|388060510|gb|EIK83202.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703Bmash]
gi|388061994|gb|EIK84630.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703C2mash]
Length = 216
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 349 QVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRK--THKGLRKVACIGAWH-PSRVQFT 405
+VFA+ +D G TKGKGF G RW K R +HK R+ +GA PSR+
Sbjct: 105 EVFAEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
Query: 406 VARAGQKGYHHRTELNKKI 424
AG+ G+ T LN I
Sbjct: 165 KRMAGRMGHVTSTALNLTI 183
>gi|269796255|ref|YP_003315710.1| 50S ribosomal protein L3P [Sanguibacter keddieii DSM 10542]
gi|269098440|gb|ACZ22876.1| LSU ribosomal protein L3P [Sanguibacter keddieii DSM 10542]
Length = 219
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 349 QVFAQDEMIDCIGVTKGKGFKGVTSR--WHTKKLPRKTHKGLRKVACI-GAWHPSRVQFT 405
+ FA ++D IG TKGKGF GV R +H HK RK I GA PSRV
Sbjct: 108 EAFASGSVVDVIGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKG 167
Query: 406 VARAGQKGYHHRTELNKKIYRMGA 429
V AG+ G +T N ++ + A
Sbjct: 168 VRMAGRMGVDRQTTQNLTVHAVDA 191
>gi|163840906|ref|YP_001625311.1| 50S ribosomal protein L3 [Renibacterium salmoninarum ATCC 33209]
gi|189029475|sp|A9WSV9.1|RL3_RENSM RecName: Full=50S ribosomal protein L3
gi|162954382|gb|ABY23897.1| LSU ribosomal protein L3P [Renibacterium salmoninarum ATCC 33209]
Length = 220
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 319 HLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR--WH 376
H++E++ N D A++ L Q + V ++F + +D +G +KGKGF GV R +H
Sbjct: 84 HVVELRTN-----DSDAYS---LGQELSV-EIFEAGQKVDVVGTSKGKGFAGVMKRHGFH 134
Query: 377 TKKLPRKTHKGLRKVACI-GAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
HK RK I GA PSRV + AG+ G T LN ++ + A
Sbjct: 135 GVGASHGAHKNHRKPGSIGGASTPSRVFKGLKMAGRMGGERHTTLNLTVHAIDA 188
>gi|325964166|ref|YP_004242072.1| 50S ribosomal protein L3P [Arthrobacter phenanthrenivorans Sphe3]
gi|323470253|gb|ADX73938.1| LSU ribosomal protein L3P [Arthrobacter phenanthrenivorans Sphe3]
Length = 216
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR--WHTKKLPRKTHKGLRKVACI 394
A L Q + V +VF + ID IG TKGKGF GV R +H HK RK I
Sbjct: 94 AEYELGQELSV-EVFEAGQKIDVIGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSI 152
Query: 395 -GAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
GA PSRV + AG+ G T LN ++
Sbjct: 153 GGASTPSRVFKGMKMAGRMGAVRHTTLNLTVH 184
>gi|332881056|ref|ZP_08448724.1| 50S ribosomal protein L3 [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680968|gb|EGJ53897.1| 50S ribosomal protein L3 [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 205
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 312 KKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV-----FAQDEMIDCIGVTKGK 366
+KR KA L + G SV K+ Q E +G FA+ E +D G++KGK
Sbjct: 57 EKRATKAELGHFKKAGSSVKKKV-IEFQGFEDNYKLGDTITVDFFAEGEFVDVSGISKGK 115
Query: 367 GFKGVTSRWHTKKLPRKT---HKGLRKVACIGA-WHPSRVQFTVARAGQKGYHHRTELNK 422
GF+GV R + + T H LR +GA +PSRV + AG+ G T N
Sbjct: 116 GFQGVVRRHGFGGVGQTTHGQHNRLRAPGSVGASSYPSRVFKGMRMAGRMGAEKVTVQNL 175
Query: 423 KIYRM 427
K+ ++
Sbjct: 176 KVLKV 180
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,061,188,266
Number of Sequences: 23463169
Number of extensions: 419912415
Number of successful extensions: 1024491
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 1015775
Number of HSP's gapped (non-prelim): 7169
length of query: 630
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 481
effective length of database: 8,863,183,186
effective search space: 4263191112466
effective search space used: 4263191112466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)