BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16472
(630 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O16797|RL3_DROME 60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=2
SV=3
Length = 416
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+ VWA+HLS+ECRRRFYKN
Sbjct: 62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTKASKKW D LGKK+I D RKM +YCKVIRVIAH+
Sbjct: 122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMIDCVGVTKGKGFKG 230
Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 123/131 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKGKG
Sbjct: 168 IRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 287
Query: 428 GAGIHTKDGKV 438
GAGIHTKDGKV
Sbjct: 288 GAGIHTKDGKV 298
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/163 (65%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 429 AGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV TVARAGQKGYHHRTE
Sbjct: 220 VGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTE 279
Query: 489 LFLCKKKYL---------SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCC 539
+ KK Y VIKNNAST+YDLT+KSITPMGGFPHYGEVNNDF+MIKGCC
Sbjct: 280 --INKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCC 337
Query: 540 MGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+G KKR+ITLRK L K K++ L +I+L + K+ R
Sbjct: 338 IGSKKRIITLRKS--LLKHTKRSALEQIKLKFIDTSSKMGHGR 378
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 528 VNNDFL-MIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
+ NDF M++ C + RVI +++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE
Sbjct: 146 IENDFRKMLRYCKV---IRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PI V VF QDEMIDC+GVTKGKGFK
Sbjct: 203 KPIQVSNVFGQDEMIDCVGVTKGKGFK 229
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2
Length = 403
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/265 (66%), Positives = 207/265 (78%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
Length = 403
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3
Length = 403
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/265 (66%), Positives = 206/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDDP+KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+V AVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD+ GKK + +D M KYC+VIRVIAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 219 bits (558), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGA HP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 112/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGA HP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3
Length = 403
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMV+VG++GYVETP GLR+FKTV+AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIR+IAHTQ
Sbjct: 122 WHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQ-------------- 167
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +
Sbjct: 168 ----------------------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKG 230
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C R+I +M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLEKDFNSMKKYCQVI--RIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYK 229
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2
Length = 403
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHT
Sbjct: 122 WHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKG 230
Score = 223 bits (569), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 118/131 (90%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKV 438
G G KDGK+
Sbjct: 288 GQGYLIKDGKL 298
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
++ + YL +IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLRK L++ +++ ++++
Sbjct: 341 KKRVLTLRKSLLVQTKRRALEKIDLKF 367
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LE
Sbjct: 145 QLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
Q +PV QVF QDEMID IGVTKGKG+K
Sbjct: 203 QQVPVSQVFGQDEMIDVIGVTKGKGYK 229
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2
Length = 402
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 203/265 (76%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGSMGF PKKRS RHRGKVK FPKDDPTKP+HLTAFI +KAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTI E PPMVIVG++GY++TP G R FKTVWAEHLS++CR RFYKN
Sbjct: 62 KPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+ S++KAF K +KKWQD+ G+K+I DL KM KYC IRVIAHT
Sbjct: 122 WHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK++K R+KKAH+MEIQ+NGG+VA+K+ WAR+HLE+ +
Sbjct: 167 ---------------------QMKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VFAQDEMIDCIGVTKGKGFKG
Sbjct: 206 PVDSVFAQDEMIDCIGVTKGKGFKG 230
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/130 (81%), Positives = 121/130 (93%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK++K R+KKAH+MEIQ+NGG+VA+K+ WAR+HLE+ +PV VFAQDEMIDCIGVTKGKG
Sbjct: 168 MKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE+NKKIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRL 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSCLTEEGK 297
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE
Sbjct: 221 GVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEV 280
Query: 489 ---LFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
++ K L+ K N TDYD+TEKS+ PMGGFPHYG VN DF+MI+GCC+G KKR
Sbjct: 281 NKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKR 340
Query: 546 VITLRKMKLLKKRQ 559
ITLRK +++ ++
Sbjct: 341 PITLRKSLIVQTKR 354
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ D +K C K RVI +MK++K R+KKAH+MEIQ+NGG+VA+K+ WAR+HLE+
Sbjct: 146 IEADLNKMKKYC--SKIRVIAHTQMKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+PV VFAQDEMIDCIGVTKGKGFK
Sbjct: 204 QVPVDSVFAQDEMIDCIGVTKGKGFK 229
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=2
SV=1
Length = 401
Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG MGF PKKRS +RG++K FPKDD +KP+HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAVTI+ETPPMVI GV GYV+TP G R+ T+WAEHLS+E RRRFY N
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHT
Sbjct: 122 WAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ +
Sbjct: 167 ---------------------QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VFAQDEMID IGVT+G GFKG
Sbjct: 206 QVDTVFAQDEMIDTIGVTRGHGFKG 230
Score = 212 bits (539), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 114/130 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ + V VFAQDEMID IGVT+G G
Sbjct: 168 MKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT +N KIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRI 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSALTEEGK 297
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 107/138 (77%), Gaps = 5/138 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT-- 487
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT
Sbjct: 221 GVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTII 280
Query: 488 --ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+++ K L+ KNN ST++DLT+K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 340
Query: 546 VITLRKMKLLKKRQKKAH 563
+ITLRK L+ + ++ AH
Sbjct: 341 LITLRK-SLITQTKRVAH 357
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+
Sbjct: 146 IEADFAKLKKYCSSI--RVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ V VFAQDEMID IGVT+G GFK
Sbjct: 204 QVQVDTVFAQDEMIDTIGVTRGHGFK 229
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3
SV=2
Length = 401
Score = 339 bits (870), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 194/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG MGF PKKRS +RG++K FPKDD +KP+HLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK+NKKE+VEAV+I+ETPPMVI GV GY++TP G R+ T+WAEHLS+E RRRFY N
Sbjct: 62 KPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK +KKWQD+ GKK I D K+ KYC IRVIAHT
Sbjct: 122 WAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I
Sbjct: 167 ---------------------QMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQI 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF+QDEMID IGVTKG GFKG
Sbjct: 206 QVDTVFSQDEMIDTIGVTKGHGFKG 230
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 98/130 (75%), Positives = 114/130 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I V VF+QDEMID IGVTKG G
Sbjct: 168 MKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT +N KIYR+
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRI 287
Query: 428 GAGIHTKDGK 437
G T++GK
Sbjct: 288 GKSALTEEGK 297
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 106/138 (76%), Gaps = 5/138 (3%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRT-- 487
G+ G VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV FTVARAGQKG+HHRT
Sbjct: 221 GVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTII 280
Query: 488 --ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+++ K L+ KNN ST++DLT+K+I PMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKR 340
Query: 546 VITLRKMKLLKKRQKKAH 563
+ITLRK L+ + ++ AH
Sbjct: 341 LITLRK-SLITQTKRVAH 357
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ DF +K C RVI +MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+
Sbjct: 146 IEADFAKLKKYCSSI--RVIAHTQMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEK 203
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKGFK 613
I V VF+QDEMID IGVTKG GFK
Sbjct: 204 QIQVDTVFSQDEMIDTIGVTKGHGFK 229
>sp|P36584|RL3B_SCHPO 60S ribosomal protein L3-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3b PE=3 SV=2
Length = 388
Score = 320 bits (821), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 186/398 (46%), Positives = 235/398 (59%), Gaps = 105/398 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHGS+GF P+KR++R RGKVK FPKDD +KPVHLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EI+EAVTI+ETPPMV+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK +KK+ + ++I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLA------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSVADK+ WAR+H E+ +
Sbjct: 173 -----------------------------QKKAHLMEIQVNGGSVADKVEWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
+ F Q+EMID IGVT+GKG N G+ A W
Sbjct: 204 DIKSTFEQNEMIDVIGVTRGKG-------------------------NEGTTAR---WGT 235
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+ L + G + CIG WH
Sbjct: 236 KRLPRKTHRGL-----RKVACIGA------------WH---------------------- 256
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
P+ VQ+TVARAG GY HRT+LN KIYR+GAG K+
Sbjct: 257 PANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNA 294
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 97/153 (63%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G T+RW TK+LPRKTH+GLRKVACIGAWHP+ VQ+TVARAG GY HRT+L
Sbjct: 219 GVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + NASTD+D TEK ITPMGGF YG V NDF+M+ G GP KRV+TL
Sbjct: 279 NSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTL 338
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK LL +KA L + L A K R
Sbjct: 339 RK-SLLTHTSRKA-LEPVSLKWIDTASKFGHGR 369
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N + IK C RV+ +++ QKKAHLMEIQ+NGGSVADK+ WAR+H E+
Sbjct: 144 INRELERIKKYC--SVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKG 611
+ + F Q+EMID IGVT+GKG
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKG 225
>sp|P40372|RL3A_SCHPO 60S ribosomal protein L3-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3a PE=1 SV=2
Length = 388
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 185/398 (46%), Positives = 235/398 (59%), Gaps = 105/398 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SH KF PRHGS+GF P+KR++R RGKVK FPKDD +KPVHLTAF+GYKAGMTHIVR+ D
Sbjct: 2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EI+EAVT++ETPPMV+VGV+GYVETP GLRS TVWAEHLS+E +RRFYKN
Sbjct: 62 RPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK +KK+ + ++I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLA------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHLMEIQ+NGGSVADK+ WAR+H E+ +
Sbjct: 173 -----------------------------QKKAHLMEIQVNGGSVADKVEWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
+ F Q+EMID IGVT+GKG N G+ A W
Sbjct: 204 DIKSTFEQNEMIDVIGVTRGKG-------------------------NEGTTAR---WGT 235
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+ L + G + CIG WH
Sbjct: 236 KRLPRKTHRGL-----RKVACIGA------------WH---------------------- 256
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
P+ VQ+TVARAG GY HRT+LN KIYR+GAG K+
Sbjct: 257 PANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNA 294
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 97/153 (63%), Gaps = 2/153 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G T+RW TK+LPRKTH+GLRKVACIGAWHP+ VQ+TVARAG GY HRT+L
Sbjct: 219 GVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ + NASTD+D TEK ITPMGGF YG V NDF+M+ G GP KRV+TL
Sbjct: 279 NSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTL 338
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
RK LL +KA L + L A K R
Sbjct: 339 RK-SLLTHTSRKA-LEPVSLKWIDTASKFGHGR 369
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 528 VNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+N + IK C RV+ +++ QKKAHLMEIQ+NGGSVADK+ WAR+H E+
Sbjct: 144 INRELERIKKYC--SVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 588 PIPVGQVFAQDEMIDCIGVTKGKG 611
+ + F Q+EMID IGVT+GKG
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKG 225
>sp|Q8NKF4|RL3_ASPFU 60S ribosomal protein L3 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rpl3 PE=1
SV=2
Length = 392
Score = 313 bits (801), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 191/265 (72%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ F P+KR+ARHRGKVK FPKDDP KPVHLTA +GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K++KKEIVEAVTI+ETPP+V VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK +KK ++ G +I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI
Sbjct: 173 ----------------------------KQKKAHLMEIQVNGGSVADKVDFARNLFEKPI 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DEMID I VTKG GF+G
Sbjct: 205 EIDSIFEKDEMIDVIAVTKGHGFQG 229
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 99/117 (84%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I VTKG GF+GVTS
Sbjct: 173 KQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT N K++R+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKG 289
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VTSRW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT C K +
Sbjct: 230 VTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTS---CNHKVFRI 286
Query: 500 ---VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+ NASTD+D+++K ITPMGGF YGEV ND++M+KG G KKRV+TLRK
Sbjct: 287 GKGSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRK 341
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ +AR E+PI + +F +DEMID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVI 219
Query: 605 GVTKGKGFK 613
VTKG GF+
Sbjct: 220 AVTKGHGFQ 228
>sp|Q3SZ10|RL3L_BOVIN 60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3
Length = 407
Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/265 (60%), Positives = 196/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q+E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQNEIIDVIAVTKGRGIKG 230
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 117/131 (89%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE+ +PV VF+Q+E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKIYR+
Sbjct: 228 IKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 287
Query: 428 GAGIHTKDGKV 438
G G+H +DGKV
Sbjct: 288 GRGLHMEDGKV 298
Score = 185 bits (470), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 109/139 (78%), Gaps = 11/139 (7%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY--- 496
VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE L KK Y
Sbjct: 231 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTE--LNKKIYRIG 288
Query: 497 --LSM----VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
L M V+KNNAST YD+T+KSITP+GGFPHYGEVNNDF+M+KGC G KKRVITLR
Sbjct: 289 RGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 348
Query: 551 KMKLLKKRQKKAHLMEIQL 569
K L+ ++ +E++
Sbjct: 349 KSLLVHHSRQALENIELKF 367
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+ME+QLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCKVI--RVIVHTQMKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q+E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQNEIIDVIAVTKGRGIK 229
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3
Length = 407
Score = 309 bits (791), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 195/265 (73%), Gaps = 36/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDP++PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG KI+K+E VEAVTI+ETPP+V+VGV+GYV TP GLRSFKT++AEHLS ECRRRFYK+
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTKA K+W+D GKK + +D M KYCKVIRVI HT
Sbjct: 122 WHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QMKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +
Sbjct: 167 ---------------------QMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF+Q E+ID I VTKG+G KG
Sbjct: 206 PVHSVFSQSEVIDVIAVTKGRGVKG 230
Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 115/131 (87%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE+ +PV VF+Q E+ID I VTKG+G
Sbjct: 168 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
KGVTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTELNKKI+R+
Sbjct: 228 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRI 287
Query: 428 GAGIHTKDGKV 438
G G H +DGK+
Sbjct: 288 GRGPHMEDGKL 298
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 107/144 (74%), Gaps = 13/144 (9%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VTSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTEL KK
Sbjct: 227 GVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL---NKK 283
Query: 496 YLSM----------VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
+ ++KNNAST YD+T KSITP+GGFPHYGEVNNDF+M+KGC G KKR
Sbjct: 284 IFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKR 343
Query: 546 VITLRKMKLLKKRQKKAHLMEIQL 569
VITLRK L+ ++ +E++
Sbjct: 344 VITLRKSLLVHHSRQAVENIELKF 367
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 527 EVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE 586
++ DF +K C RVI +MKLL RQKKAH+MEIQLNGG+VA+K+AWA+ LE
Sbjct: 145 QLQKDFAAMKKYCK--VIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGFK 613
+ +PV VF+Q E+ID I VTKG+G K
Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVK 229
>sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3
PE=2 SV=2
Length = 389
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 189/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KRS+RHRGKVK FPKDD +KP HLT+F+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLRS +VWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF +DEMID IGVTKGKG++G
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 107/156 (68%), Gaps = 7/156 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKY---LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y S + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 582
+TLR+ LLK+ + A L EI+L + K R
Sbjct: 340 VTLRQ-SLLKQTSRLA-LEEIKLKFIDTSSKFGHGR 373
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 545 RVIT---LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601
RVI +RKMK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV VF +DEMI
Sbjct: 161 RVIAHTQIRKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMI 218
Query: 602 DCIGVTKGKGFKECV 616
D IGVTKGKG++ V
Sbjct: 219 DIIGVTKGKGYEGVV 233
>sp|P59671|RL3_NEUCR 60S ribosomal protein L3 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-3
PE=3 SV=1
Length = 392
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 184/265 (69%), Gaps = 37/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+ + P+KR+ARHRGKVK FPKDD KPVHLTA +GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPG+K +KKE+VEAVTI++TPPM++VG++GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK KK D G I ++L ++ KYC V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYVKKHSDNNG-AAITRELERIKKYCTVVRVLAHTQIRKTPL-------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+QKKAHLMEIQ+NGGSVADK+ + E+P+
Sbjct: 173 ----------------------------KQKKAHLMEIQINGGSVADKVEFGHGLFEKPV 204
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
+ +F +DE+ID I VTKG GF G
Sbjct: 205 SIDSIFEKDEVIDVIAVTKGHGFTG 229
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 97/117 (82%)
Query: 314 RQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F +DE+ID I VTKG GF GVT+
Sbjct: 173 KQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTA 232
Query: 374 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT +N KIYR+G G
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKG 289
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 97/133 (72%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT+RW TKKLPRKTHKGLRKVACIGAWHPS VQ+TVARAGQ GYHHRT + +
Sbjct: 226 GFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYR 285
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+++A+T+ D+T+K ITPMGGF YGE+NNDF+M+KG G KKRV+TLRK +
Sbjct: 286 IGKGDAEDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFV 345
Query: 556 KKRQKKAHLMEIQ 568
+K +E++
Sbjct: 346 HTSRKALEKVELK 358
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ + +F +DE+ID I
Sbjct: 160 RVLAHTQIRKTPLKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVI 219
Query: 605 GVTKGKGF 612
VTKG GF
Sbjct: 220 AVTKGHGF 227
>sp|P34113|RL3_DICDI 60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1
SV=2
Length = 398
Score = 293 bits (749), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/266 (54%), Positives = 191/266 (71%), Gaps = 37/266 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHG++GF P+KR+ARH+GKVK FPKDD T+ VHLTAF+GYKAGMTH+VR+ +
Sbjct: 2 SHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKEIVEAVTI+E PPM IVG++GYVET GL+++KTVWA+HLS RRR YKN
Sbjct: 62 KPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKN 121
Query: 159 WYKSR-QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS+ +KAFTK K+++ + GKK+I L+ + K C V+RVIAHTQ +H+
Sbjct: 122 WYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQ-----VHK----- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
LK QKKAH++EIQ+NGGS+ +K+ +A + E+
Sbjct: 172 --------------------------LKLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKT 205
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VFA++E+ID IGVTKGKGF G
Sbjct: 206 VNVTGVFAENELIDVIGVTKGKGFNG 231
Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Query: 311 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370
LK QKKAH++EIQ+NGGS+ +K+ +A + E+ + V VFA++E+ID IGVTKGKGF G
Sbjct: 172 LKLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNG 231
Query: 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
V RW +KLPRKTHKGLRKVACIGAWHPSRV TV RAGQ GYHHR E NKKIYR+G
Sbjct: 232 VIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQA 291
Query: 431 IHTKDGK 437
+DGK
Sbjct: 292 -QPEDGK 297
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V RW +KLPRKTHKGLRKVACIGAWHPSRV TV RAGQ GYHHR E
Sbjct: 222 GVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVE- 280
Query: 490 FLCKKKYLSMVIK-------NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
KK Y + + T++DLTEK+I PMGGF HYG V ++FLM+KGC GP
Sbjct: 281 -RNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGP 339
Query: 543 KKRVITLRK 551
+KR +TLRK
Sbjct: 340 RKRALTLRK 348
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI ++ LK QKKAH++EIQ+NGGS+ +K+ +A + E+ + V VFA++E+ID I
Sbjct: 162 RVIAHTQVHKLKLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVI 221
Query: 605 GVTKGKGFKECV 616
GVTKGKGF +
Sbjct: 222 GVTKGKGFNGVI 233
>sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2
SV=4
Length = 390
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 190/265 (71%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR++RHRGKVK FPKDDPTKP LT+F+GYKAGMTHIVR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPPMV+VGV+GYV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT+ SKK + + GKK I L KM KYC VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAHL EIQ+NGG +A K+ +A E+ +
Sbjct: 170 ---------------------KMKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV +F +DEMID IGVTKGKG++G
Sbjct: 207 PVDAIFQKDEMIDIIGVTKGKGYEG 231
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+YR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRV 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 108/153 (70%), Gaps = 14/153 (9%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
+ KK Y + ++A T+YD TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV
Sbjct: 281 -MNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL-------NGG 572
+TLR+ LLK+ + A + EI+L NGG
Sbjct: 340 VTLRQT-LLKQTSRLA-MEEIKLKFIDAASNGG 370
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV +F +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>sp|Q759R7|RL3_ASHGO 60S ribosomal protein L3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL3 PE=3 SV=2
Length = 387
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/266 (55%), Positives = 185/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAV++++TPPMV+VGV+GY+ETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD I ++L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAA---IERELARIKKYASVVRVLAHTQVRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGSV++K+ WAR+H E+
Sbjct: 172 -----------------------------VQKKAHLAEIQLNGGSVSEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 203 VSVDSVFEQNEMIDVIAVTKGHGFEG 228
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/116 (71%), Positives = 97/116 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGSV++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKG 288
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+T++D T+K+ITPMGGF HYG VNNDF+M+KG G +KRV+TLRK L
Sbjct: 289 GDEGNAATEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRK-SLYTSTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
++A L E+ L A K R
Sbjct: 348 RRA-LEEVNLKWIDTASKFGKGR 369
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L+ QKKAHL EIQLNGGSV++K+ WAR+H E+ + V VF Q+EMID I VTK
Sbjct: 166 VRKTPLV---QKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTK 222
Query: 609 GKGFKECVH 617
G GF+ H
Sbjct: 223 GHGFEGVTH 231
>sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2
SV=5
Length = 389
Score = 280 bits (715), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 185/265 (69%), Gaps = 35/265 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR+ RHRGKVK FPKDD TKP TAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETP MV+VGV+ YV+TP GLRS TVWA+HLS+E RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFT +K++ + GKK I L KM KY VIRV+AHTQ +
Sbjct: 122 WAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+MK LK QKKAH+MEIQ+NGG++A K+ +A E+ I
Sbjct: 170 ---------------------KMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
P+ VF +DEMID IGVTKGKG++G
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEG 231
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 2/121 (1%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTKGKG
Sbjct: 171 MKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKG 228
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
++GV +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTELNKKIYR+
Sbjct: 229 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 288
Query: 428 G 428
G
Sbjct: 289 G 289
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 104/143 (72%), Gaps = 7/143 (4%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE- 280
Query: 490 FLCKKKYLSMVI---KNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
L KK Y + + A T+YD TEK +TPMGGFPHYG V +D+LMIKGCC+GPKKRV
Sbjct: 281 -LNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRV 339
Query: 547 ITLRKMKLLKKRQKKAHLMEIQL 569
+TLR+ LL + + A L EI+L
Sbjct: 340 VTLRQ-SLLTQTSRLA-LEEIKL 360
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RKMK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+ VF +DEMID IGVTK
Sbjct: 168 IRKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTK 225
Query: 609 GKGFKECV 616
GKG++ V
Sbjct: 226 GKGYEGVV 233
>sp|Q6BXM5|RL3_DEBHA 60S ribosomal protein L3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPL3 PE=3 SV=1
Length = 389
Score = 274 bits (700), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 184/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHGS+GF P+KRSA RG+VK FPKD +KPV LTAF+GYKAGMT +VR+ D
Sbjct: 2 SHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK++K+EIVEA T+++TPP+V+VGV+GYVETP GLRS TVWAEHLS+E RRRFYKN
Sbjct: 62 RPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + + ++L ++ KY V+RV+AHTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTPLA------- 172
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQ+NGGSV+DK+ WA++H E+ +
Sbjct: 173 -----------------------------QKKAHLAEIQVNGGSVSDKVDWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF +DEM+D VTKG GF+G
Sbjct: 204 SVDSVFEKDEMVDVAAVTKGHGFEG 228
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 97/116 (83%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF +DEM+D VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ VQ+TVARAGQ G+HHRT +N K+YR+G+
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSA 288
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 86/112 (76%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ VQ+TVARAGQ G+HHRT + + S
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSA 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
+++ +T++D T+K+I PMGGF YG V NDF+++KG G KKR++T+RK
Sbjct: 289 GDESSGATEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRK 340
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ ++K QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V VF +DEM+D
Sbjct: 159 RVLAHTQIKKTPLAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVA 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>sp|Q6CJR7|RL3_KLULA 60S ribosomal protein L3 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPL3 PE=3 SV=1
Length = 387
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 184/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD TKPV LT+F+GYKAGM+ IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + + + ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAENGAQ--VDRELARIKKYASVVRVLVHTQVRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQLNGGSV+DK+ WA++H E+ +
Sbjct: 172 ----------------------------SQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID + VTKG GF+G
Sbjct: 204 AVDSVFEQNEMIDVVAVTKGHGFEG 228
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 98/116 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGSV+DK+ WA++H E+ + V VF Q+EMID + VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT +N K+YR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKG 288
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+T++D T+K+ITPMGGF HYG +NNDF+++KG G +KRV+TLRK L
Sbjct: 289 DDEANAATEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVTLKWIDTASKFGKGR 369
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGSV+DK+ WA++H E+ + V VF Q+EMID +
Sbjct: 159 RVLVHTQVRKTPLSQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVV 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>sp|O96774|RL3_TETTH Ribosomal protein L3 OS=Tetrahymena thermophila GN=RPL3 PE=1 SV=1
Length = 391
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/283 (49%), Positives = 183/283 (64%), Gaps = 45/283 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P++R+ HRG+ + FPKDDP+K HLTAF G+KAGMTHI+RE D
Sbjct: 2 SHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GS+ NKKE+VEAVT++E PPM IVGV+GY++TP GLR+ TVWA+ + ++RFYKN
Sbjct: 62 RSGSRHNKKEVVEAVTVIECPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQD--LRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
W S +KAFT K + K AQD L+++ KYC V+RVIAHT
Sbjct: 122 WANSNKKAFTHHEKNFDQK------AQDLLLKRIEKYCSVVRVIAHT------------- 162
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
M L RQKK H++EIQ+NGG VA+K+A+A+ LE+
Sbjct: 163 -----------------------NMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEK 199
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
+ V +FA++EM+D +GVTKGKGF G +I +K QKK H
Sbjct: 200 EVKVDSIFAENEMLDVLGVTKGKGFAG-VIKRFGVKHLQKKTH 241
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/123 (61%), Positives = 97/123 (78%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M L RQKK H++EIQ+NGG VA+K+A+A+ LE+ + V +FA++EM+D +GVTKGKG
Sbjct: 164 MSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKG 223
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F GV R+ K L +KTH+G RKV CIGAWHPSR++FTV RAGQ GYHHRTE NKK+YR+
Sbjct: 224 FAGVIKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRV 283
Query: 428 GAG 430
G G
Sbjct: 284 GKG 286
Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 91/126 (72%), Gaps = 8/126 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K L +KTH+G RKV CIGAWHPSR++FTV RAGQ GYHHRTE
Sbjct: 217 GVTKGKGFAGVIKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTET 276
Query: 490 FLCKKKYLSMVIK----NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKR 545
K + V K +NAST D+T+K+ITP+GGFPHYG V NDF+MIKGCC+GPKKR
Sbjct: 277 ----NKKVYRVGKGDDASNASTAGDVTDKAITPLGGFPHYGVVKNDFIMIKGCCVGPKKR 332
Query: 546 VITLRK 551
V+TLRK
Sbjct: 333 VLTLRK 338
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI M L RQKK H++EIQ+NGG VA+K+A+A+ LE+ + V +FA++EM+D +
Sbjct: 157 RVIAHTNMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVL 216
Query: 605 GVTKGKGF 612
GVTKGKGF
Sbjct: 217 GVTKGKGF 224
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL3 PE=1 SV=4
Length = 387
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/266 (54%), Positives = 184/266 (69%), Gaps = 40/266 (15%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A R +VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKW-QDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
WYKS++KAFTK S K+ QD G I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAG---IERELARIKKYASVVRVLVHTQIRKTPL------- 171
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
QKKAHL EIQLNGGS+++K+ WAR+H E+
Sbjct: 172 -----------------------------AQKKAHLAEIQLNGGSISEKVDWAREHFEKT 202
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+ V VF Q+EMID I VTKG GF+G
Sbjct: 203 VAVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEA 292
Query: 435 DGKVS 439
+G S
Sbjct: 293 NGATS 297
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ N +T +D T+K+ITPMGGF HYGE+ NDF+M+KGC G +KR++TLRK L
Sbjct: 289 DDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA L E+ L A K R
Sbjct: 348 RKA-LEEVSLKWIDTASKFGKGR 369
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I
Sbjct: 159 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>sp|Q6FTJ2|RL3_CANGA 60S ribosomal protein L3 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL3 PE=3
SV=1
Length = 387
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 183/265 (69%), Gaps = 38/265 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A RG+VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+EIVEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ + I ++L ++ KY V+RV+ HTQ ++ L
Sbjct: 122 WYKSKKKAFTKYSAKYAQNGAE--IERELARIKKYATVVRVLVHTQVRKTPL-------- 171
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QKKAHL EIQLNGGS+++K+ WAR+H E+ +
Sbjct: 172 ----------------------------VQKKAHLAEIQLNGGSISEKVDWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF Q+EMID I VTKG GF+G
Sbjct: 204 SVDSVFEQNEMIDAIAVTKGHGFEG 228
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 98/116 (84%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+GVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
W TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT +N KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKG 288
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 440 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSM 499
VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYHHRT + +
Sbjct: 229 VTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKG 288
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
+ NA+T++D T+K+I PMGGF HYG VNNDF+M+KG G KKRV+TLRK L
Sbjct: 289 DDEGNAATNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRK-SLYTNTS 347
Query: 560 KKAHLMEIQLNGGSVADKIAWAR 582
+KA + E+ L A K R
Sbjct: 348 RKA-VEEVTLKWIDTASKFGKGR 369
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 549 LRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+RK L+ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTK
Sbjct: 166 VRKTPLV---QKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTK 222
Query: 609 GKGFKECVH 617
G GF+ H
Sbjct: 223 GHGFEGVTH 231
>sp|Q8SQI3|RL3_ENCCU 60S ribosomal protein L3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPL3-1 PE=1 SV=1
Length = 383
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 190/394 (48%), Gaps = 113/394 (28%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
S RKF+APRHGS+ F P+KRS R FP DD ++PVHLT F+ YKAGMTH+VR
Sbjct: 2 SCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKT 61
Query: 99 RPG-SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYK 157
+ +K +EI++AVT+LE PPMV+ G++GY +T GLR V A ++S RR +
Sbjct: 62 QVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFG 121
Query: 158 NWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSH 217
N Y ASK+ + K ++ + +M K +++H
Sbjct: 122 NRY---------ASKESAGQFCKGSVCESRVEMIK---------------------ERAH 151
Query: 218 TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQ-KKAHLMEIQLNGGSVADKIAWARQHLEQ 276
+Q TQP L+K KKAH+ EIQ+NGGS+++K+ WA LE+
Sbjct: 152 CVRVLVQ-----TQPT---------LIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEK 197
Query: 277 PIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAW 336
I +G+VF +E ID IGVTKGKGF+G + + K+ +K
Sbjct: 198 EIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRK-------------------- 237
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
+R+ + + + CIG WH ++
Sbjct: 238 SRKGIRK-------------VACIGA------------WHPSRV---------------- 256
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
+++ARAGQ G+H RTE NK++Y +G G
Sbjct: 257 ------MYSIARAGQMGFHRRTEKNKRVYMIGNG 284
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 93/129 (72%), Gaps = 3/129 (2%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G R+ +K PRK+ KG+RKVACIGAWHPSRV +++ARAGQ G+H RTE
Sbjct: 215 GVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEK 274
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
K+ Y+ +N T++DLTEK I+PMGGFPHYGEV NDF+M+KG +G +KRV+TL
Sbjct: 275 --NKRVYMIGNGSSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTL 332
Query: 550 RKMKLLKKR 558
RK LL++R
Sbjct: 333 RK-SLLRQR 340
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KKAH+ EIQ+NGGS+++K+ WA LE+ I +G+VF +E ID IGVTKGKGF+ V
Sbjct: 170 KKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTV 226
>sp|Q29293|RL3_PIG 60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1
Length = 130
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 85/94 (90%)
Query: 345 IPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQF 404
+PV QVF QDEMID IGVTKGKG+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+R F
Sbjct: 2 VPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAF 61
Query: 405 TVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKV 438
+VARAGQKGYHHRTE+NKKIY++G G KDGK+
Sbjct: 62 SVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKL 95
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 85/113 (75%), Gaps = 7/113 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTE- 488
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+R F+VARAGQKGYHHRTE
Sbjct: 18 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEI 77
Query: 489 ---LFLCKKKYL---SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMI 535
++ + YL +IKNN TDYDL++KSI P+G F HYGEV NDF+M+
Sbjct: 78 NKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
+PV QVF QDEMID IGVTKGKG+KG
Sbjct: 2 VPVNQVFGQDEMIDVIGVTKGKGYKG 27
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 589 IPVGQVFAQDEMIDCIGVTKGKGFK 613
+PV QVF QDEMID IGVTKGKG+K
Sbjct: 2 VPVNQVFGQDEMIDVIGVTKGKGYK 26
>sp|A3DNA4|RL3_STAMF 50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1
Length = 395
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 80/307 (26%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFP------------------KDDPTKPVHL 80
HRK+SAPRHGS+G P+KR+A+ +++ +P K KPV L
Sbjct: 2 GHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-L 60
Query: 81 TAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGLRSF 139
++ YKAGM+H + DRP + + KEI VT+L+ PP++I+G+ GY P HGL SF
Sbjct: 61 LGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSF 120
Query: 140 KTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRV 199
VW + E + Y+ Y F LG K I + KY K +R
Sbjct: 121 GEVWRSPV--EALKELYEKIYS--DNPFI--------NLGAKDIVR------KYLKGLRK 162
Query: 200 I--------AHTQ--------NQQQSLHQNQQSHTKD-------QPIQSNVNKTQPDSHE 236
+ H++ N ++ L + + + D P+ S + K +P+
Sbjct: 163 VNPGLVKPEPHSEYGFKFLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPE--- 219
Query: 237 SHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVT 296
++EI++ GG+++++I +A + L + V QVF + + ID IGVT
Sbjct: 220 ----------------IIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVT 263
Query: 297 KGKGFKG 303
KGKGF+G
Sbjct: 264 KGKGFQG 270
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ GG+++++I +A + L + V QVF + + ID IGVTKGKGF+GV R
Sbjct: 215 KKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKR 274
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHRTELNKKIYRMG 428
+ K+LPR K KG RK IG+ P + + GQ G+H RTE NK+I ++G
Sbjct: 275 FGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG 328
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ GG+++++I +A + L + V QVF + + ID IGVTKGKGF+ +
Sbjct: 215 KKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVI 272
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQFT-VARAGQKGYHHR 486
G+ G V R+ K+LPR K KG RK IG+ P + + GQ G+H R
Sbjct: 261 GVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRR 317
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE Y +IK + +TP GGF YG V ++M+ G +GP+KR+
Sbjct: 318 TE-------YNKRIIK------IGINGWEVTPKGGFLGYGIVYGPYIMLHGSIIGPRKRL 364
Query: 547 ITLR 550
+ LR
Sbjct: 365 LVLR 368
>sp|A1RVG3|RL3_PYRIL 50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl3p PE=3 SV=1
Length = 342
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 161/406 (39%), Gaps = 126/406 (31%)
Query: 37 KASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVRE 96
+A K + PR GSMG YP+KR+A +V+ +P+ + KP L F YKAGM H V
Sbjct: 3 RAMGLKINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVV 61
Query: 97 ADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGL-RSFKTVWAEHLSQECRRR 154
DRP S + KE+V+AVT+L+ PP+ I G Y P +G RS VWA L RR
Sbjct: 62 EDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRR- 120
Query: 155 FYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
T K DK KK + + + +
Sbjct: 121 -----------VLTLPEKVDVDKQMKKV----------------------EEFKDVAVDV 147
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQH 273
++ QP S + K P+ L+EI + G SV ++I +A
Sbjct: 148 RALVATQPHLSGIGKKTPE-------------------LLEIPIGGVPSVDERIKFAVSL 188
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADK 333
L + + +VF +++D I VTKGKG++G
Sbjct: 189 LGKTVSPKEVFTAGQLVDVIAVTKGKGYQG------------------------------ 218
Query: 334 IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVAC 393
+I GVT + RWH K KG R+
Sbjct: 219 ----------------------VIKRFGVT-------ILPRWH------KHRKGHRRTGT 243
Query: 394 IGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM---GAGIHTKDG 436
IG P+ V FT R GQ G+H RTE NK+I ++ GA I K G
Sbjct: 244 IGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAEITPKSG 288
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 24/115 (20%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ V FT R GQ G+H RTE Y
Sbjct: 225 VTILPRWH------KHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTE-------YN 270
Query: 498 SMVIK--NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+IK +N + ITP GF HYG V +++I+G G +KR++ LR
Sbjct: 271 KRIIKIGDNGA--------EITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLR 317
Score = 39.7 bits (91), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 559 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K L+EI + G SV ++I +A L + + +VF +++D I VTKGKG++ +
Sbjct: 162 KKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVI 220
>sp|A4FVY2|RL3_METM5 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl3p PE=3 SV=1
Length = 334
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 57/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P S N
Sbjct: 8 PRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNN 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 65 GQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRK----------- 113
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T A K+ +K A L + + +R I HT P +
Sbjct: 114 -LTLAKKE------EKKTADALDAVVEKATEVRAIVHT-----------------NPKTT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++EI++ G SVA+++A+A++ L + + +G VF
Sbjct: 150 GIPKKKPE-------------------VVEIRIGGSSVAERLAYAKEILGKTLAIGDVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E+ID + +TKGKGF+G +
Sbjct: 191 AGEIIDTLAITKGKGFQGSV 210
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 102/236 (43%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + +G VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ G SVA+++A+A++ L + + +G VF E+ID + +TKGKGF+ V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSV 210
>sp|C6A159|RL3_THESM 50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rpl3p PE=3 SV=1
Length = 359
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 282 QVFAQ--DEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 339
+VF Q E+ D + + + + L + +KK +ME + G S+ +K + ++
Sbjct: 137 EVFQQKLGELEDLVKTGEVVELRALVATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKE 196
Query: 340 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP 399
L + I VG++ + E++D + VTKGKG +G RW K K KG RKVA IG WHP
Sbjct: 197 KLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGVKLTSHKDSKGRRKVATIGPWHP 256
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMGA-GIHTKDG-KVSVT 441
+RV +TV RAGQ G+HHRTE NK++ R+G G T +G K+ +T
Sbjct: 257 ARVMWTVPRAGQMGFHHRTEFNKRLLRIGENGKLTLNGEKIEIT 300
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKVA IG WHP+RV +TV RAGQ G+HHRTE K+ L I
Sbjct: 231 RWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEF---NKRLLR--IG 285
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
N + + ITP GGFPHYG V NDF+MI G G KR+I +R
Sbjct: 286 ENGKLTLNGEKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMR 333
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 43/265 (16%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ S PR GS+ + P+KR+ +++ +P++ + V + F GYKAGMTH++ D PG
Sbjct: 3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQE---CRRRFYKN 158
KEI VTI+E PP+++ G+ Y GL + V E +R
Sbjct: 60 L-TKGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLENYPSKRAKNVT 118
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+YK ++ K + +++ ++ + +L + K +V+ + A
Sbjct: 119 FYKLLERRIKTLPKNYTEEVFQQKLG-ELEDLVKTGEVVELRA----------------- 160
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+ TQP L + +KK +ME + G S+ +K + ++ L + I
Sbjct: 161 --------LVATQP----------WLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEI 202
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
VG++ + E++D + VTKGKG +G
Sbjct: 203 RVGEILQEGELLDIVAVTKGKGTQG 227
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 555 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
L + +KK +ME + G S+ +K + ++ L + I VG++ + E++D + VTKGKG
Sbjct: 168 LARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKG 224
>sp|A6VHD2|RL3_METM7 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl3p PE=3 SV=1
Length = 334
Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 126/264 (47%), Gaps = 57/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K S PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S N +E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRK------- 113
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
T K+ +K A L + + +RVI HT
Sbjct: 114 -----LTLVKKE------EKKTADALDAVLEKATEVRVIVHT-----------------N 145
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
P + + K +P+ ++EI++ G SVA+++A+A++ L + + +
Sbjct: 146 PKTTGIPKKKPE-------------------VVEIRIGGSSVAERLAYAKEILGKTLAIS 186
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF E+ID + +TKGKGF+G +
Sbjct: 187 DVFEAGEIIDTLAITKGKGFQGSV 210
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI K +KK ++EI++ G SVA+++A+A++ L + + + VF E+ID +
Sbjct: 139 RVIVHTNPKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTL 198
Query: 605 GVTKGKGFKECV 616
+TKGKGF+ V
Sbjct: 199 AITKGKGFQGSV 210
>sp|Q9YFM2|RL3_AERPE 50S ribosomal protein L3P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl3p PE=3
SV=1
Length = 344
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 133/268 (49%), Gaps = 60/268 (22%)
Query: 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRP 100
RK APR GS+GF P+KR++R +VK +P+ D KPV L AF+GY+AGMTH+ DRP
Sbjct: 4 RKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRP 62
Query: 101 GSKINKKEIVEAVTILETPPMVIVGVIGYVETPH-GLRSFKTVWAEHLSQ-ECRRRFYKN 158
G + KEI VTI+ETPPM + V Y P+ G S WA+ + E +RR
Sbjct: 63 GRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI--- 119
Query: 159 WYKSRQKAF--TKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQS 216
S +F K K +++L K A+D +R+IA +Q +
Sbjct: 120 ---STLGSFDTDKMLKSLEERLDK---AED----------VRLIAASQPK---------- 153
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKI-AWARQHLE 275
+ ++K +PD L+EI++ G S K+ +A+ L
Sbjct: 154 ------LAGGLSKKKPD-------------------LLEIKVGGVSDVTKLFDYAKDVLG 188
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
I V VF + +++D I VTKGKGF+G
Sbjct: 189 NLIAVNDVFEEGQLVDVIAVTKGKGFQG 216
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 7/114 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKI-AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTS 373
+KK L+EI++ G S K+ +A+ L I V VF + +++D I VTKGKGF+GV
Sbjct: 160 KKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIK 219
Query: 374 RWHTKKLPR--KTHKGLRKVACIGAWHPSRVQF-TVARAGQKGYHHRTELNKKI 424
RW K+LPR K KG R+ IGA R F +AGQ G+H RTE NK+I
Sbjct: 220 RWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRI 270
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 440 VTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVQF-TVARAGQKGYHHRTELFLCKKKY 496
V RW K+LPR K KG R+ IGA R F +AGQ G+H RTE K
Sbjct: 217 VIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEY----NKR 269
Query: 497 LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ M+ D +TP GGF YG V + F+M+ G G KR I +R
Sbjct: 270 ILMI---------DDDGYKVTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMR 314
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 559 QKKAHLMEIQLNGGSVADKI-AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK L+EI++ G S K+ +A+ L I V VF + +++D I VTKGKGF+ +
Sbjct: 160 KKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVI 218
>sp|B1YD88|RL3_PYRNV 50S ribosomal protein L3P OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1
Length = 338
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 151/395 (38%), Gaps = 133/395 (33%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR+A +V+ +P+ + KP L F YKAGM H V DRP
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHG--LRSFKTVWAEHLSQECRRRFYKNW 159
S + KE+V VT+L+ PP+ I G Y P RS VWA L RR
Sbjct: 63 SPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRR------ 116
Query: 160 YKSRQKAFTKASKKWQDKLGKKT-----IAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ 214
T K DK KK +A D+R +
Sbjct: 117 ------VLTLPEKADVDKQMKKVEEFKDVAVDVRAL------------------------ 146
Query: 215 QSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQH 273
QP S + K P+ L+EI + G SV ++I +A
Sbjct: 147 ---VATQPHLSGIGKKTPE-------------------LLEIPIGGVPSVDERIKFAVSL 184
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADK 333
L + + +VF +++D I VTKGKG++G
Sbjct: 185 LGKTVSPKEVFTAGQLVDVIAVTKGKGYQG------------------------------ 214
Query: 334 IAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVAC 393
+I GVT + RWH K KG R+
Sbjct: 215 ----------------------VIKRFGVT-------ILPRWH------KHRKGHRRTGT 239
Query: 394 IGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
IG P+ + FT R GQ G+H RTE NK++ ++G
Sbjct: 240 IGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIG 273
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ + FT R GQ G+H RTE K +
Sbjct: 221 VTILPRWH------KHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEY----NKRV 269
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ N A ITP GF HYG + +++I+G G KKR++ LR
Sbjct: 270 VKIGDNGAE---------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313
Score = 39.7 bits (91), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 559 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K L+EI + G SV ++I +A L + + +VF +++D I VTKGKG++ +
Sbjct: 158 KKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVI 216
>sp|A9A9B8|RL3_METM6 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl3p PE=3 SV=1
Length = 334
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 125/264 (47%), Gaps = 57/264 (21%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K S PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S N +E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRK------- 113
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
T K+ +K A L + + +R I HT
Sbjct: 114 -----LTLVKKE------EKKTADALDAVLEKATEVRAIVHT-----------------N 145
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
P + + K +P+ ++EI++ G SVA+++A+A++ L + + +
Sbjct: 146 PKTTGIPKKKPE-------------------VVEIRIGGSSVAERLAYAKEILGKTLAIS 186
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF E+ID + +TKGKGF+G +
Sbjct: 187 DVFEAGEIIDTLAITKGKGFQGSV 210
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+ V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSV 210
>sp|O59418|RL3_PYRHO 50S ribosomal protein L3P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl3p PE=3 SV=1
Length = 362
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAW 336
+ Q+E +G + +GE++ ++ L Q KK +ME + G SV +K +
Sbjct: 137 YTQEEFEQKLGALEDMIKEGEIVEVRALVSTQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 196
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
++ L + I VG+V + E++D I VTKGKG +G RW K K KG RKV IG
Sbjct: 197 IKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGP 256
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 257 WHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 288
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTEL K+ ++ I
Sbjct: 234 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL---NKRLIA--IG 288
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N D E ITP GGFPHYG V DF+MI G G KR+I +R ++ +KK
Sbjct: 289 ENGKLVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPA--IRPPKKKP 346
Query: 563 HLMEIQLNGGSVADK 577
+ Q+ SV K
Sbjct: 347 PVQRPQITYVSVESK 361
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 127/266 (47%), Gaps = 42/266 (15%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K PR GS+ F P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG
Sbjct: 3 KIHRPRKGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
N KEI VTI+ETPP+ + G+ Y + GL + V + Y K
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETAGEVIVPDFELDN----YTPSKK 114
Query: 162 SRQKAFTKASKKWQDKLGKK--TIAQDLRKMAKYCKVIRVIAHTQNQ-QQSLHQNQQSHT 218
+ + FT + LG++ T+ +D +TQ + +Q L +
Sbjct: 115 GKGRKFT-----FYQFLGRRIATLPKD---------------YTQEEFEQKLGALEDMIK 154
Query: 219 KDQPIQSN-VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277
+ + ++ + TQP + K +KK +ME + G SV +K + ++ L +
Sbjct: 155 EGEIVEVRALVSTQP----------WVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKE 204
Query: 278 IPVGQVFAQDEMIDCIGVTKGKGFKG 303
I VG+V + E++D I VTKGKG +G
Sbjct: 205 IRVGEVLKEGELLDVIAVTKGKGTQG 230
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K +KK +ME + G SV +K + ++ L + I VG+V + E++D I VTKGKG
Sbjct: 173 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKG 227
>sp|Q8ZW52|RL3_PYRAE 50S ribosomal protein L3P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl3p PE=3 SV=1
Length = 338
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 159/401 (39%), Gaps = 126/401 (31%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
K + PR GSMG YP+KR+A +V+ +P+ + KP L F YKAGM H V DRP
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPT 62
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETP-HGL-RSFKTVWAEHLSQECRRRFYKNW 159
S + KE+V+AVT+L+ PP+ + G Y P +G R+ VWA L + R
Sbjct: 63 SPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHR------ 116
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
T K DK KK ++ R +A + +
Sbjct: 117 ------VLTLPEKLDVDKQLKKV--EEFRDVAVDVRAL--------------------VA 148
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNG-GSVADKIAWARQHLEQPI 278
QP S + K P+ L+EI + G SV ++I +A L + +
Sbjct: 149 TQPHLSGIGKKTPE-------------------LLEIPIGGVPSVDERINFAISLLGKTV 189
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 338
VF +++D I VTKGKG++G
Sbjct: 190 SPKDVFTPGQLVDVIAVTKGKGYQG----------------------------------- 214
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 398
+I GVT + RWH K KG R+ IG
Sbjct: 215 -----------------VIKRFGVT-------ILPRWH------KHRKGHRRTGTIGPQA 244
Query: 399 PSRVQFTVARAGQKGYHHRTELNKKIYRM---GAGIHTKDG 436
P+ V FT R GQ G+H RTE NK++ ++ GA I K G
Sbjct: 245 PA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAEITPKSG 284
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 20/113 (17%)
Query: 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYL 497
V++ RWH K KG R+ IG P+ V FT R GQ G+H RTE K L
Sbjct: 221 VTILPRWH------KHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEY----NKRL 269
Query: 498 SMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ +N A ITP GFPHYG V +++I+G G +KR++ LR
Sbjct: 270 LKIGENGAE---------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 559 QKKAHLMEIQLNG-GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K L+EI + G SV ++I +A L + + VF +++D I VTKGKG++ +
Sbjct: 158 KKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVI 216
>sp|Q6LX10|RL3_METMP 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl3p PE=3 SV=1
Length = 334
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 123/260 (47%), Gaps = 57/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P S +
Sbjct: 8 PRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNS 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ VT+LETP + + G+ Y +T GL++ VWAE L + R+
Sbjct: 65 SQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRK----------- 113
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
T A K+ +K L + + +R I HT P +
Sbjct: 114 -LTLAKKE------EKKTVDALDAVLEKATEVRAIVHT-----------------NPKTT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++EI++ G SVA+++A+A++ L + + + VF
Sbjct: 150 GIPKKKPE-------------------VVEIRIGGSSVAERLAYAKEILGKTLAISDVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E+ID + +TKGKGF+G +
Sbjct: 191 AGEIIDTLAITKGKGFQGSV 210
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 80/236 (33%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G R
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKR 212
Query: 375 WHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434
W K VQF G H R G G HT
Sbjct: 213 WGIK-----------------------VQF--------GKHQRK---------GVGRHT- 231
Query: 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKK 494
IG W P RV +TV GQ G+H RTE
Sbjct: 232 --------------------------GSIGPWRPRRVMWTVPLPGQMGFHQRTE------ 259
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
Y ++K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 260 -YNKRILKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+ V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSV 210
>sp|A6UQJ0|RL3_METVS 50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1
Length = 334
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 57/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P S N
Sbjct: 8 PRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNN 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ VT+LETP + + G+ Y +T GL++ VWA+ +E R+
Sbjct: 65 GQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL---------- 114
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+KK + K + L + + +RVI HT P +
Sbjct: 115 ---TVTKKEEIK-----TVESLDAVLEKTVDLRVIVHT-----------------NPKTT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++EI++ G SVA+K+A+A+ L + + + VF
Sbjct: 150 GIPKKKPE-------------------VVEIRVGGSSVAEKLAYAKDILGKTLSINDVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E ID + VTKGKGF+G +
Sbjct: 191 TGEFIDTLAVTKGKGFQGPV 210
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+K+A+A+ L + + + VF E ID + VTKGKGF+G R
Sbjct: 153 KKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKR 212
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
W K + + KG+ R+ IG W P RV +TV AGQ G+H RTE NK+I ++G+
Sbjct: 213 WGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGS 269
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + KG+ R+ IG W P RV +TV AGQ G+H RTE Y +
Sbjct: 212 RWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTE-------YNKRI 264
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 265 LKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI K +KK ++EI++ G SVA+K+A+A+ L + + + VF E ID +
Sbjct: 139 RVIVHTNPKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTL 198
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ V
Sbjct: 199 AVTKGKGFQGPV 210
>sp|Q9UWG2|RL3_METVA 50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3
SV=1
Length = 334
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 57/260 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ + K++ +P D K V L AF YKAG TH + + P S N
Sbjct: 8 PRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNN 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+E+ VT+LETP + + G+ Y +T GL++ VWA+ +E R+
Sbjct: 65 GQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL---------- 114
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
+KK + K + L + + +RVI HT P +
Sbjct: 115 ---TVTKKEEIK-----TVESLDAVLEKTVDLRVIVHT-----------------NPKTT 149
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+ K +P+ ++EI++ G SVA+K+A+A+ L + + + VF
Sbjct: 150 GIPKKKPE-------------------VVEIRVGGSSVAEKLAYAKDILGKTLSINDVFE 190
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E ID + VTKGKGF+G +
Sbjct: 191 TGEFIDTLAVTKGKGFQGPV 210
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G SVA+K+A+A+ L + + + VF E ID + VTKGKGF+G R
Sbjct: 153 KKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKR 212
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429
W K + + KG+ R+ IG W P RV +TV AGQ G+H RTE NK+I ++G+
Sbjct: 213 WGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGS 269
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + KG+ R+ IG W P RV +TV AGQ G+H RTE Y +
Sbjct: 212 RWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTE-------YNKRI 264
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+K + ITP GGF +YG V N ++++KG GP KR++ LR
Sbjct: 265 LKLGSEG------AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLR 308
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI K +KK ++EI++ G SVA+K+A+A+ L + + + VF E ID +
Sbjct: 139 RVIVHTNPKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTL 198
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ V
Sbjct: 199 AVTKGKGFQGPV 210
>sp|Q9V1T5|RL3_PYRAB 50S ribosomal protein L3P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl3p PE=3 SV=1
Length = 361
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQ-------KKAHLMEIQLNGGSVADKIAW 336
+ +D+ +G + +GE++ ++ L Q KK +ME + G SV +K +
Sbjct: 136 YTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 195
Query: 337 ARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 396
++ L + + VG+V + E++D I VTKGKG +G RW K K KG RKV IG
Sbjct: 196 IKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGP 255
Query: 397 WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 256 WHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 287
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 75/135 (55%), Gaps = 7/135 (5%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTEL K+ ++ I
Sbjct: 233 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL---NKRLIA--IG 287
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N D E ITP GGFPHYG V +DF+MI G G KR+I +R ++ +KK
Sbjct: 288 ENGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPA--IRPPKKKP 345
Query: 563 HLMEIQLNGGSVADK 577
+ Q+ SV K
Sbjct: 346 PVQRPQITYVSVESK 360
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 59/270 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG N
Sbjct: 7 PRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGLT-N 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWA------EHLSQECRRR---FY 156
KEI VTI+ETPP+ + G+ Y + GL + V ++S++ + R FY
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFTFY 122
Query: 157 ---KNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQN 213
K + K +TK ++ KLG +L M K +++ V A Q +
Sbjct: 123 QLLKRRIATLPKNYTKDD--FEQKLG------NLEDMIKEGEIVEVRALVATQPWVI--- 171
Query: 214 QQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQH 273
K +KK +ME + G SV +K + ++
Sbjct: 172 --------------------------------KLKKKPEVMEYAIGGTSVEEKFNYIKEK 199
Query: 274 LEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
L + + VG+V + E++D I VTKGKG +G
Sbjct: 200 LGKELRVGEVLKEGELLDVIAVTKGKGTQG 229
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K +KK +ME + G SV +K + ++ L + + VG+V + E++D I VTKGKG
Sbjct: 172 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKG 226
>sp|Q8TZZ8|RL3_PYRFU 50S ribosomal protein L3P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl3p PE=1 SV=1
Length = 365
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 74/116 (63%)
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVT 372
K +KK +ME + G SV +K + ++ L + + VG+V + E++D I VTKGKG +G
Sbjct: 175 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPV 234
Query: 373 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTELNK++ +G
Sbjct: 235 KRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 290
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 443 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIK 502
RW K K KG RKV IG WHP+RV +TV AGQ G+HHRTEL K L + +
Sbjct: 236 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTEL----NKRLIAIGE 291
Query: 503 NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA 562
N + TE ITP GGFPHYG V +DF+MI G G KR+I +R ++ +KK
Sbjct: 292 NGKLKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPA--IRPPKKKP 349
Query: 563 HLMEIQLNGGSVADK 577
+ Q+ SV K
Sbjct: 350 PVQRPQITYVSVESK 364
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 34/259 (13%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+GF P+KR+ +++ +PK+ V + F GYKAGMTHI+ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGL-TN 62
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
KEI VTI+ETPP+ + G+ Y GL + V + N+ +K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLD-------NYPAKERK 115
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAH-TQNQQQSLHQNQQSHTKDQPIQ 224
K KM Y + R IA +N Q + + + +D +
Sbjct: 116 GKPKP------------------KMTFYKLLERRIATLPKNYTQEMFEQKLGQLEDMIKE 157
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
+ D + K +KK +ME + G SV +K + ++ L + + VG+V
Sbjct: 158 GEIV----DVRAIVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVL 213
Query: 285 AQDEMIDCIGVTKGKGFKG 303
+ E++D I VTKGKG +G
Sbjct: 214 KEGELLDVIAVTKGKGTQG 232
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 557 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K +KK +ME + G SV +K + ++ L + + VG+V + E++D I VTKGKG
Sbjct: 175 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKG 229
>sp|Q2NFV6|RL3_METST 50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl3p PE=3 SV=1
Length = 337
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 112/259 (43%), Gaps = 57/259 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR AR +V +P+ D L AF GYK GMTH+ R GS
Sbjct: 7 PRKGSVAFSPRKRVARETPRVSTWPELDEA---GLLAFAGYKVGMTHVTALDSRKGSPTE 63
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWA-EHLSQECRRRFYKNWYKSRQ 164
E+ VTILE PP+V++G+ Y +T +GL++ V A ++L E R+
Sbjct: 64 NMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------- 114
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
+ K+ D K ++LR IRV+ HT+
Sbjct: 115 -----SVPKFDDIEAK---IEELRNKIDDIDEIRVLIHTKP------------------- 147
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
KL +KK ++E L G SV DK+ +A L + I VF
Sbjct: 148 -----------------KLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVF 190
Query: 285 AQDEMIDCIGVTKGKGFKG 303
+ E D I TKGKG +G
Sbjct: 191 QEGEYTDAIATTKGKGVQG 209
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
KL +KK ++E L G SV DK+ +A L + I VF + E D I TKGKG
Sbjct: 148 KLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGV 207
Query: 369 KGVTSRWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
+G R+ + + + G+ R V IG W P+R +TVA GQ GYH RTE NKK+ +
Sbjct: 208 QGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLK 267
Query: 427 MG 428
+G
Sbjct: 268 IG 269
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 458 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517
R V IG W P+R +TVA GQ GYH RTE Y ++K ++ DL I
Sbjct: 230 RHVGSIGPWTPNRTMWTVAMQGQMGYHKRTE-------YNKKLLKIGDESEVDL----IN 278
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
P GGF YG V N+++++KG GP KR++ LRK
Sbjct: 279 PDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRK 312
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ K KL +KK ++E L G SV DK+ +A L + I VF + E D I
Sbjct: 140 RVLIHTKPKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAI 199
Query: 605 GVTKGKGFKECVHSNASCAKYFKS 628
TKGKG + V +Y K+
Sbjct: 200 ATTKGKGVQGPVKRFGVRIQYGKA 223
>sp|P54014|RL3_METJA 50S ribosomal protein L3P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl3p PE=3 SV=1
Length = 335
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 58/264 (21%)
Query: 43 FSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGS 102
+ PR GS+ F P+KR+ R +++ +P++D V L AF YKAGM+H + D P S
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKS 61
Query: 103 KINKKEIVEAVTILETPPMVIVGVIGYVETPHG-LRSFKTVWAEHLSQECRRRFYKNWYK 161
+E+ +TILE PP+ + + Y L + VWA++L +E R+
Sbjct: 62 PNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI------ 115
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
K K +KT+ +DL + + +RV+ HT + L
Sbjct: 116 -----------KLPKKEDRKTV-EDLEALKDKIEDVRVLVHTNPKLTCLP---------- 153
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 281
+KK ++EI++ G + +++ +A++ L + + +
Sbjct: 154 --------------------------KKKPEILEIRIGGKDIEERLNYAKEILGKQLNIT 187
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEM 305
VF + E++D IGVTKGKGF+G++
Sbjct: 188 DVFQEGELVDTIGVTKGKGFQGQV 211
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G + +++ +A++ L + + + VF + E++D IGVTKGKGF+G R
Sbjct: 154 KKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKR 213
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + KG+ R V IG W P V ++V GQ GYH RTE NK+I ++G
Sbjct: 214 WGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG 269
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + KG+ R V IG W P V ++V GQ GYH RTE K+ L
Sbjct: 213 RWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEY---NKRILK-- 267
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
I NN ITP GGF HYG + N+++++KG GP KR+I LR+
Sbjct: 268 IGNNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRR 310
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ KL +KK ++EI++ G + +++ +A++ L + + + VF + E++D I
Sbjct: 140 RVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTI 199
Query: 605 GVTKGKGFK 613
GVTKGKGF+
Sbjct: 200 GVTKGKGFQ 208
>sp|Q975I1|RL3_SULTO 50S ribosomal protein L3P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl3p PE=3 SV=1
Length = 343
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 48/265 (18%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK ++PR GS G P+KR++ + +P +P L F+GYK GM+HI D+
Sbjct: 3 HRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDK 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159
P S KEI V+++ETPP++ + + YV P G
Sbjct: 62 PTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKG------------------------ 97
Query: 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTK 219
T ++ W D I++DL K+ + KV R+ + + L +
Sbjct: 98 ------EPTTLTEYWGD------ISEDLLKLIQQRKVTRLKIDKEKMKGKLDE------- 138
Query: 220 DQPIQSNVNKTQPDSHESHVQMKLLKKR-QKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
I + +N Q KL+ +KK ++E+Q+ GG + ++ + L +P+
Sbjct: 139 ---INNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPL 195
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
V VF + ++ID IGVTKGKGF+G
Sbjct: 196 SVKDVFKEGQLIDIIGVTKGKGFQG 220
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++E+Q+ GG + ++ + L +P+ V VF + ++ID IGVTKGKGF+GV R
Sbjct: 165 KKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKR 224
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPS-RVQFTVARAGQKGYHHRTELNKKIYRM 427
+ +LPR K KG RKV GA PS V + GQ GYH RTE NK+I ++
Sbjct: 225 YGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKI 277
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPS-RVQFTVARAGQKGYHHR 486
G+ G V R+ +LPR K KG RKV GA PS V + GQ GYH R
Sbjct: 211 GVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRR 267
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE K+ L + N I P GGF +YG V N +L+I+G +G KKR
Sbjct: 268 TE---YNKRILKISDDPN----------EINPKGGFVNYGIVRNTYLIIEGSIIGAKKRP 314
Query: 547 ITLR 550
+ LR
Sbjct: 315 LFLR 318
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 527 EVNN---DFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 583
E+NN D L ++ K V +L K KK ++E+Q+ GG + ++ +
Sbjct: 138 EINNKLNDILYLRVLIATQPKLVPSLGK--------KKPEIVEVQVGGGDIKSQLNYVLN 189
Query: 584 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
L +P+ V VF + ++ID IGVTKGKGF+ V
Sbjct: 190 ILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVV 222
>sp|Q3IMY8|RL3_NATPD 50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl3p PE=3 SV=1
Length = 336
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 123/277 (44%), Gaps = 55/277 (19%)
Query: 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSK 103
S PR GSMGF P+ R+A + +P DD +P L F GYKAGM+H+V D P S
Sbjct: 5 SRPRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSP 62
Query: 104 INKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR 163
+E VT++ETPPM V V Y +TP+G R VW + + ++ R
Sbjct: 63 REGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLER---------- 112
Query: 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPI 223
+ + ++ D G A D +A +RVI HT
Sbjct: 113 --SLSVPEEQSGDIEGDIRTALDEGALAD----VRVITHTVPG----------------A 150
Query: 224 QSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI--PVG 281
S+V K +PD +ME ++ GGS++D++ +A ++ V
Sbjct: 151 LSSVPKKEPD-------------------VMETRVGGGSLSDRVDFALDLVDDGGEHTVT 191
Query: 282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKA 318
VF E D G+TKGKG +G + + K++ K A
Sbjct: 192 DVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHA 228
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKGVT 372
+K+ +ME ++ GGS++D++ +A ++ V VF E D G+TKGKG +G
Sbjct: 156 KKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPV 215
Query: 373 SRWHTKKLPRK-THKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430
RW +K K +G R+ + +G W+PSRV+ TV + GQ GYH RTELNK++ +G
Sbjct: 216 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLGDD 275
Query: 431 IHTKDG 436
+ DG
Sbjct: 276 DVSPDG 281
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 26/158 (16%)
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYRMG-----AGIHTKDGKVSVTSRWHTKKLPRK-T 453
RV F + G H T+ ++R G AGI G RW +K K
Sbjct: 173 DRVDFALDLVDDGGEHTVTD----VFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHA 228
Query: 454 HKGLRK-VACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512
+G R+ + +G W+PSRV+ TV + GQ GYH RTEL K+ + DL
Sbjct: 229 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL---NKRLI------------DLG 273
Query: 513 EKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550
+ ++P GGF +YGEV+ + ++KG GP KR++ R
Sbjct: 274 DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFR 311
Score = 36.2 bits (82), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIP--VGQVFAQDEMIDCIGVTKGKGFKECV 616
+K+ +ME ++ GGS++D++ +A ++ V VF E D G+TKGKG + V
Sbjct: 156 KKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPV 215
>sp|O26110|RL3_METTH 50S ribosomal protein L3P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl3p PE=3 SV=1
Length = 337
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 57/261 (21%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPK-DDPTKPVHLTAFIGYKAGMTHIVREADRPGSKI 104
PR GS+ F P+KR+AR +VK +P+ D+P L A GYKAGMTH++ ++ S
Sbjct: 7 PRKGSVAFSPRKRAARETPRVKSWPQVDEP----GLLALAGYKAGMTHVMMVDNQKNSPT 62
Query: 105 NKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQ 164
E+ VTILE PP+ ++ V Y +T GL++ V A + RR+
Sbjct: 63 EGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKLTPP------ 116
Query: 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQ 224
D ++ + +R +Y +RVI HT + S+
Sbjct: 117 ----------ADDYDQEAAIEKIRSNMEYVADVRVIVHTNPRLASVP------------- 153
Query: 225 SNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVF 284
+KK + E L G + +K +A + L + + ++F
Sbjct: 154 -----------------------KKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIF 190
Query: 285 AQDEMIDCIGVTKGKGFKGEM 305
++ +D I VTKGKGF+G +
Sbjct: 191 SEGAFVDAIAVTKGKGFQGPV 211
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
+L +KK + E L G + +K +A + L + + ++F++ +D I VTKGKGF
Sbjct: 148 RLASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGF 207
Query: 369 KGVTSRWHTK---KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIY 425
+G RW + ++ KG R + +G W PSR +TV +AGQ GYH RTE NK+I
Sbjct: 208 QGPVKRWGIRIQYGKAARSSKG-RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQIL 266
Query: 426 RMG 428
++G
Sbjct: 267 KIG 269
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 452 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDL 511
++ KG R + +G W PSR +TV +AGQ GYH RTE Y ++K +++ DL
Sbjct: 225 RSSKG-RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTE-------YNKQILKIGDASEADL 276
Query: 512 TEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNG 571
+ P GGF YG V ND++MIKG GP KR++ LRK +Q++A Q+N
Sbjct: 277 ----VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAIRAAGKQEEAP----QINY 328
Query: 572 GSVADK 577
S A K
Sbjct: 329 ISTASK 334
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +L +KK + E L G + +K +A + L + + ++F++ +D I
Sbjct: 140 RVIVHTNPRLASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAI 199
Query: 605 GVTKGKGFKECV 616
VTKGKGF+ V
Sbjct: 200 AVTKGKGFQGPV 211
>sp|C3N5S7|RL3_SULIA 50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27)
GN=rpl3p PE=3 SV=1
Length = 351
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 127/271 (46%), Gaps = 52/271 (19%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK ++PR GS G P+KRS+ + +P+ + P L F+GYK GM+H+ D
Sbjct: 3 HRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDW 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKT-VWA----EHLSQECRRR 154
P S N KEI VT+LE PP++ + + Y G + T W+ + L R R
Sbjct: 62 PNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIR 121
Query: 155 FYKNWYKSRQKAFTKASKKWQDKLGKK--TIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQ 212
+ ++ K+ + + KK+++K G K I +L ++ + R++ TQ ++
Sbjct: 122 SFSSFLKNDE-----SKKKFEEKFGSKLDLIKSNLDRIVYF----RLLVATQPRK----- 167
Query: 213 NQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQ 272
++ K PD L+EIQ+ GG ++ +A
Sbjct: 168 -----------IPSLGKKVPD-------------------LVEIQIGGGEKKAQLDYALN 197
Query: 273 HLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 303
L + I + VF + ++ID +GVTKGKGF G
Sbjct: 198 VLGKEISIKDVFKEGQLIDVVGVTKGKGFAG 228
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF GV R
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKR 232
Query: 375 WHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
+ +LPR K KG RK+ G PS + GQ G+H RTE NK+I ++G
Sbjct: 233 YSVVELPRWHKHRKGSRKIGTRGPSLGTPS----YTPQPGQLGFHRRTEYNKRIIKIG 286
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 76/180 (42%), Gaps = 35/180 (19%)
Query: 389 RKVACIGAWHPSRVQFTVARAGQKGYHHRTELN--------KKIYRMG-----AGIHTKD 435
RK+ +G P V+ + G+K LN K +++ G G+
Sbjct: 166 RKIPSLGKKVPDLVEIQIG-GGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
Query: 436 GKVSVTSRWHTKKLPR--KTHKGLRKVACIGA--WHPSRVQFTVARAGQKGYHHRTELFL 491
G V R+ +LPR K KG RK+ G PS + GQ G+H RTE
Sbjct: 225 GFAGVIKRYSVVELPRWHKHRKGSRKIGTRGPSLGTPS----YTPQPGQLGFHRRTE--- 277
Query: 492 CKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
Y +IK K I P GGF YG V N +++++G +G KKR I LR+
Sbjct: 278 ----YNKRIIKIGDDP------KEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLRE 327
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 609
RK+ L K K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKG
Sbjct: 166 RKIPSLGK--KVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKG 223
Query: 610 KGFKECV 616
KGF +
Sbjct: 224 KGFAGVI 230
>sp|Q4JB40|RL3_SULAC 50S ribosomal protein L3P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl3p PE=3 SV=1
Length = 342
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 49/265 (18%)
Query: 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADR 99
HRK S+PR GS G P+KR+ K +P + +P L FIGYKAGMTH+ D+
Sbjct: 3 HRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDK 61
Query: 100 PGSKINKKEIVEAVTILETPPMVIVGVIGY-VETPHGLRSFKTVWAEHLSQECRRRFYKN 158
P S KE+ VTI+E+PP++ + + Y +++ L WA +
Sbjct: 62 PTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANFEEGSLK------ 115
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
+ K + + S K ++KL I ++L + +R++ TQ
Sbjct: 116 YLKRKITSLKVDSSKMKEKL--DLIQKNLNNIT----YMRLLVSTQPW------------ 157
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
+ ++ K +P+ ++EIQ+ GGS+ D++ + L + I
Sbjct: 158 ----LVPSLGKKRPE-------------------IVEIQIGGGSIQDQLNYGLSLLGKQI 194
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
PV VF + ++ D IGVTKGKGF+G
Sbjct: 195 PVRDVFREGQLTDIIGVTKGKGFQG 219
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+K+ ++EIQ+ GGS+ D++ + L + IPV VF + ++ D IGVTKGKGF+GV R
Sbjct: 164 KKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKR 223
Query: 375 WHTKKLPR--KTHKGLRKVACIGAWHPS-RVQFTVARAGQKGYHHRTELNKKIYRMGAGI 431
+ + PR K KG RK IGA PS V + GQ G+H RTE NK+I ++G +
Sbjct: 224 YSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRRTEYNKRIIKIGDNV 280
Query: 432 H 432
+
Sbjct: 281 N 281
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
+K+ ++EIQ+ GGS+ D++ + L + IPV VF + ++ D IGVTKGKGF+ +
Sbjct: 164 KKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVI 221
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPR--KTHKGLRKVACIGAWHPS-RVQFTVARAGQKGYHHR 486
G+ G V R+ + PR K KG RK IGA PS V + GQ G+H R
Sbjct: 210 GVTKGKGFQGVIKRYSVVEFPRWHKHRKGSRK---IGARGPSISTPSYVPQPGQLGFHRR 266
Query: 487 TELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRV 546
TE Y +IK + + I P GG +YG V N +L+I+G +G +KR
Sbjct: 267 TE-------YNKRIIKIGDNVN------EINPAGGIVNYGLVKNTYLVIEGSVLGSRKRP 313
Query: 547 ITLR 550
+ LR
Sbjct: 314 LFLR 317
>sp|A6UV68|RL3_META3 50S ribosomal protein L3P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1
Length = 333
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 58/260 (22%)
Query: 46 PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKIN 105
PR GS+ F P+KR+ R K++ +P+ + K L AF YKAG TH + + + P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPKIRSWPERETVK---LLAFPVYKAGTTHALYKENNPKSPNA 64
Query: 106 KKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQK 165
+++ VT++E P + I G+ Y + GL++ VWA+ +E R+ N K
Sbjct: 65 DQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRKI--NLPKE--- 119
Query: 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQS 225
KA+ + D++ K + +R I HT + +L
Sbjct: 120 --PKANTEKLDEVADKIVE------------VRAIVHTNPKDTNLP-------------- 151
Query: 226 NVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFA 285
+KK ++EI++ G +++D IA+A+ + + + + VF
Sbjct: 152 ----------------------KKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFT 189
Query: 286 QDEMIDCIGVTKGKGFKGEM 305
E ID + +TKGKGF+G +
Sbjct: 190 GGEFIDTVAITKGKGFQGPV 209
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSR 374
+KK ++EI++ G +++D IA+A+ + + + + VF E ID + +TKGKGF+G R
Sbjct: 152 KKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKR 211
Query: 375 WHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMG 428
W K + + +KG+ R IG W P R+ +TV AGQ G+H RTE NK+I ++G
Sbjct: 212 WGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIG 267
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 15/111 (13%)
Query: 443 RWHTK-KLPRKTHKGL-RKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMV 500
RW K + + +KG+ R IG W P R+ +TV AGQ G+H RTE K+ L
Sbjct: 211 RWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTE---YNKRILK-- 265
Query: 501 IKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
I N S I P GGF +YG V N+++++KG GP KR++ LR+
Sbjct: 266 IGENGS--------EIVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLRE 308
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 559 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV-- 616
+KK ++EI++ G +++D IA+A+ + + + + VF E ID + +TKGKGF+ V
Sbjct: 152 KKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKR 211
Query: 617 ---------HSNASCAKYFKSLG 630
H N ++ S+G
Sbjct: 212 WGIKIQFGKHQNKGVGRHTGSIG 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,627,929
Number of Sequences: 539616
Number of extensions: 10345327
Number of successful extensions: 28971
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 26851
Number of HSP's gapped (non-prelim): 2083
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)