Query psy16472
Match_columns 630
No_of_seqs 375 out of 2123
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 22:12:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00103 60S ribosomal protein 100.0 4E-123 9E-128 967.3 31.5 373 38-587 1-373 (390)
2 KOG0746|consensus 100.0 4E-124 8E-129 951.0 20.7 364 51-587 1-364 (384)
3 PRK04231 rpl3p 50S ribosomal p 100.0 2E-106 4E-111 833.5 29.9 335 40-579 1-337 (337)
4 TIGR03626 L3_arch archaeal rib 100.0 5E-104 1E-108 813.1 29.5 328 44-577 1-330 (330)
5 PF00297 Ribosomal_L3: Ribosom 100.0 3.2E-65 6.9E-70 516.4 10.5 257 87-550 1-263 (263)
6 COG0087 RplC Ribosomal protein 100.0 6.3E-52 1.4E-56 408.5 18.3 210 80-556 1-213 (218)
7 CHL00143 rpl3 ribosomal protei 100.0 2.4E-50 5.1E-55 395.8 15.8 181 338-552 3-206 (207)
8 TIGR03625 L3_bact 50S ribosoma 100.0 1.2E-48 2.5E-53 382.5 16.2 178 339-550 1-202 (202)
9 PRK00001 rplC 50S ribosomal pr 100.0 2.1E-48 4.6E-53 382.6 15.1 181 338-554 3-207 (210)
10 PTZ00103 60S ribosomal protein 100.0 1.4E-44 3.1E-49 378.4 12.8 231 9-312 1-238 (390)
11 KOG3141|consensus 100.0 9.8E-44 2.1E-48 359.4 11.7 218 338-601 63-306 (310)
12 PRK04231 rpl3p 50S ribosomal p 100.0 8.2E-36 1.8E-40 309.4 11.0 216 11-312 1-223 (337)
13 TIGR03626 L3_arch archaeal rib 100.0 1.8E-35 3.9E-40 305.9 10.6 210 15-312 1-218 (330)
14 PF00297 Ribosomal_L3: Ribosom 100.0 1.6E-33 3.4E-38 286.0 4.7 178 344-553 1-252 (263)
15 TIGR03625 L3_bact 50S ribosoma 100.0 2.3E-30 4.9E-35 254.0 10.2 158 261-429 1-180 (202)
16 CHL00143 rpl3 ribosomal protei 100.0 2.1E-30 4.5E-35 255.2 9.7 160 259-429 2-182 (207)
17 PRK00001 rplC 50S ribosomal pr 100.0 9.6E-30 2.1E-34 250.9 9.9 157 260-429 3-181 (210)
18 KOG3141|consensus 99.9 7.2E-26 1.6E-30 230.0 8.3 165 259-433 62-248 (310)
19 KOG0746|consensus 99.9 1.5E-25 3.3E-30 230.1 6.8 153 22-205 1-158 (384)
20 COG0087 RplC Ribosomal protein 99.7 3.1E-18 6.7E-23 170.2 6.1 103 338-444 2-128 (218)
21 KOG1405|consensus 52.9 33 0.00072 38.4 6.4 80 180-284 255-339 (484)
No 1
>PTZ00103 60S ribosomal protein L3; Provisional
Probab=100.00 E-value=4e-123 Score=967.31 Aligned_cols=373 Identities=65% Similarity=1.096 Sum_probs=348.9
Q ss_pred cccCCCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeee
Q psy16472 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILE 117 (630)
Q Consensus 38 ~~~rk~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e 117 (630)
||||||++||||||||+|||||++++|+|++||+||.++|+||+||+|||||||||++++|||+|+++++|+++||||||
T Consensus 1 MshRk~~~PR~GSLgf~PRKRa~~~~~rvrswP~dd~~~~p~L~aF~GyKAGMTHvv~~~drp~S~~~~kEv~~~VTIiE 80 (390)
T PTZ00103 1 MSHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGYKAGMTHIVRDVDRPGSKLHKKEVVEAVTIIE 80 (390)
T ss_pred CCCCCCCCCCCCcCCcCCccccccCCCCcccCCCcCCCCCceEeeeeeeccCCeEEEEecCCCCCCcCCCeEEeeeEEEe
Confidence 89999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEE
Q psy16472 118 TPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVI 197 (630)
Q Consensus 118 ~pp~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 197 (630)
||||+|+|+++|.+||+||++++||||++|++||.|+|||||++|+++||+++.++|.+ ++++++.++.|.++|.+|
T Consensus 81 tPPm~V~GirgY~~tp~Gl~~l~~vwA~~l~~e~~rr~yk~~~~s~k~af~k~~~~~~~---~~~~~~~~~~l~k~~~~I 157 (390)
T PTZ00103 81 APPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYKNWYKSKKKAFTKYKKFAAT---KKAEERTLKRIKKYCSVI 157 (390)
T ss_pred CCCeEEEEEEEEEECCCCcEEeEEEeeccCcHHHhhhhccccchhhhhhhhhhhhhhcc---hhhHHHHHHHHhhcccEE
Confidence 99999999999999999999999999999999999999999999999999999887765 456777788888899999
Q ss_pred EEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCc
Q psy16472 198 RVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277 (630)
Q Consensus 198 r~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkq 277 (630)
|+|+|||| ++++
T Consensus 158 Rvi~hTqp------------------------------------~~~~-------------------------------- 169 (390)
T PTZ00103 158 RVIAHTQP------------------------------------SKLP-------------------------------- 169 (390)
T ss_pred EEEEEcch------------------------------------hhcC--------------------------------
Confidence 99999996 4444
Q ss_pred cccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEE
Q psy16472 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 357 (630)
Q Consensus 278 vPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~V 357 (630)
++|||||||||||||+++++|+|||+++||++|++++||++||+|
T Consensus 170 -----------------------------------l~kKkp~imEiqv~GGsv~~k~d~a~~llgk~i~v~dvF~~ge~V 214 (390)
T PTZ00103 170 -----------------------------------LGQKKAHVMEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEMI 214 (390)
T ss_pred -----------------------------------cCCcCccEEEEeecCCCHHHHHHHHHHHhcCeechhhhccCCCEe
Confidence 567788888888888888888999999999999999999999999
Q ss_pred EEEEEeeccceeeeEEeeccCCCCCcCcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCc
Q psy16472 358 DCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGK 437 (630)
Q Consensus 358 DVTgVTKGKGYqGVqkRwG~kk~p~KthkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf 437 (630)
||+|||||+|||||++|||++++|+++|++||++||||+|+|+||+++++|+||||||++|++|++|+++|...|
T Consensus 215 DVigvTKGKGfqGvvKRwg~~~~p~ktH~~~RkvGsiG~w~P~RV~~~v~~aGQmG~h~rTe~Nk~I~rI~~~~~----- 289 (390)
T PTZ00103 215 DVIGVTKGHGFEGVVKRWGVTRLPRKTHRGLRKVACIGAWHPARVQYTVPRAGQHGYHHRTELNKKIYRIGVAED----- 289 (390)
T ss_pred eeEEEEcCCccccCeeccccCCCCccccCCCCCCCccCCCCCCcccCCCccCcCCCCceEEEeccEEEEEcCCCC-----
Confidence 999999999999999999999999779999999999999999999999999999999999999999999995211
Q ss_pred eeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEe
Q psy16472 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517 (630)
Q Consensus 438 ~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~ 517 (630)
.++++|+|||+..+||
T Consensus 290 ----------------------------------------------------------------~~~~~t~~~~~~~~It 305 (390)
T PTZ00103 290 ----------------------------------------------------------------PNNATTEADLTEKTIT 305 (390)
T ss_pred ----------------------------------------------------------------cccccccccccccccc
Confidence 1457789999999999
Q ss_pred cCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEccccccccccccCC
Q psy16472 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587 (630)
Q Consensus 518 p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~GhgrfqLek 587 (630)
|||||+|||+|+|||||||||||||++++|+||++++++ +++.++++|+|+|||||||+||||||+.+
T Consensus 306 P~GGF~hYG~V~~d~imiKGsVpGp~kr~v~lR~ai~~~--~~~~~~~~~~lkfidtssk~ghgrfqt~~ 373 (390)
T PTZ00103 306 PMGGFPHYGTVRNDFLMLKGCVVGPKKRVITLRKSLVPQ--TSRKALEKITLKFIDTSSKIGHGRFQTKE 373 (390)
T ss_pred cCCCccccceecCCEEEEeccccCCCCceEEEehhhccc--cccccccccceeEeecccccCcccccChH
Confidence 999999999999999999999999999999999999877 55689999999999999999999999853
No 2
>KOG0746|consensus
Probab=100.00 E-value=3.7e-124 Score=950.97 Aligned_cols=364 Identities=74% Similarity=1.224 Sum_probs=352.0
Q ss_pred ccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEe
Q psy16472 51 MGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYV 130 (630)
Q Consensus 51 lgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~ 130 (630)
|||+|||||++|+++|++||+||+++|||||+|+|||||||||||++||||||.|++|++|||||+|||||+|||++||.
T Consensus 1 l~F~P~kRs~r~rgkvkafPkDD~skpvhlT~FlgYKAGMThivRe~drpgsK~~kkEv~eAVTi~etPpmvVvgvvgyv 80 (384)
T KOG0746|consen 1 LGFLPRKRSSRHRGKVKAFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYV 80 (384)
T ss_pred CCCCccchhhhhccccccCCCCCCCCceeEeeeecccccceeeehhhcCcccccchhhheeeEEEeccCCEEEEEEeeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhcc
Q psy16472 131 ETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSL 210 (630)
Q Consensus 131 ~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~ 210 (630)
+||+|||+|.+|||||||+||+|||||||++|++|||++|+++|+++++++.++++++.|++||.+||||||||
T Consensus 81 ~Tp~Glr~l~tv~A~hlSde~~Rrfyknw~kskkkaft~~~k~~~~~~gk~~~~~~~~~~kky~~virv~ahtq------ 154 (384)
T KOG0746|consen 81 ETPRGLRTLKTVWAEHLSDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQ------ 154 (384)
T ss_pred ecCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhcchhhHHHHHHHHhhhheeeeeeech------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceee
Q psy16472 211 HQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 290 (630)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~i 290 (630)
|++|+.+||||||||||+|||+|++|++||+++||+||||++||+|||||
T Consensus 155 ------------------------------~~~~~l~qkkahlmeiqvngGtia~KvdwA~~~lEkqv~v~~vF~qdemI 204 (384)
T KOG0746|consen 155 ------------------------------MRLLPLRQKKAHLMEIQVNGGTVAEKVDWARERLEKQVPVNQVFGQDEMI 204 (384)
T ss_pred ------------------------------hhhhhhhhhhhhheeeeecCCcHHHHhHHHHhhhhccCchhhcccccccc
Confidence 79999999999999999999999999999999999999999999888888
Q ss_pred EEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceee
Q psy16472 291 DCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKG 370 (630)
Q Consensus 291 dvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqG 370 (630)
| ++++|+|+||+|
T Consensus 205 d-------------------------------------------------------------------~IgvtkGkGykG 217 (384)
T KOG0746|consen 205 D-------------------------------------------------------------------VIGVTKGKGYKG 217 (384)
T ss_pred c-------------------------------------------------------------------eeeeeecccccc
Confidence 6 455666778889
Q ss_pred eEEeeccCCCCCcCcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCceeeeeccccCCCC
Q psy16472 371 VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLP 450 (630)
Q Consensus 371 VqkRwG~kk~p~KthkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf~Gv~KR~~f~~~p 450 (630)
|+.|||.+++|+|||+|.|+++|||+|||+||.+++.++||.|||++|++|.+||++|+..
T Consensus 218 vt~rw~tkklprkthrglrkvacigawhpa~V~~sVaRaGqkgyHhrTeiNkkiY~ig~g~------------------- 278 (384)
T KOG0746|consen 218 VTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYRIGQGK------------------- 278 (384)
T ss_pred cccccccccCcchhcccchheeecccccccceeeeeeccccccchhhhhhhhheeeccccc-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999621
Q ss_pred CCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCC
Q psy16472 451 RKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNN 530 (630)
Q Consensus 451 ~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~ 530 (630)
+++||++|||||+.+.|+|||||||||+|.|
T Consensus 279 -------------------------------------------------~~~~nastdyDlt~k~itpmggf~hYG~V~n 309 (384)
T KOG0746|consen 279 -------------------------------------------------LIKNNASTDYDLTEKSITPMGGFPHYGEVIN 309 (384)
T ss_pred -------------------------------------------------ccccccccCccccccccccCCCcceeeeeec
Confidence 2679999999999999999999999999999
Q ss_pred cEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEccccccccccccCC
Q psy16472 531 DFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587 (630)
Q Consensus 531 n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~GhgrfqLek 587 (630)
||+|+||||+||++++++||++++.+ +++.++|+|+|+||||+||+||||||+.+
T Consensus 310 dfvM~kgcvvg~kKrv~TLrksll~q--tkr~alE~i~lKfiDTtSkfGhgrFQT~~ 364 (384)
T KOG0746|consen 310 DFVMLKGCVVGPKKRVVTLRKSLLKQ--TKRRALEKIVLKFIDTTSKFGHGRFQTVE 364 (384)
T ss_pred hheeecccccCccccccchhhhhhhh--hhhhhhhcccceeeeeccccCCcccccHH
Confidence 99999999999999999999999999 89999999999999999999999999854
No 3
>PRK04231 rpl3p 50S ribosomal protein L3P; Reviewed
Probab=100.00 E-value=1.9e-106 Score=833.49 Aligned_cols=335 Identities=42% Similarity=0.724 Sum_probs=310.8
Q ss_pred cCCCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeeecC
Q psy16472 40 HRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETP 119 (630)
Q Consensus 40 ~rk~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~p 119 (630)
+|||++||||||||+|||||++++++|++||+||. +++|+||+|||||||||++++|||+|+++++|+++||||||||
T Consensus 1 ~~k~~~PRrGSlgf~PRKRa~~~~prirswP~~d~--~p~l~~F~GyKaGMTHv~~~ddrp~S~~~gkEi~~~VTviEtP 78 (337)
T PRK04231 1 MRKIHRPRRGSLAFSPRKRAKSIVPRIRSWPEIDG--EPKLLGFAGYKAGMTHVIMIDDRPNSPTEGKEIFVPVTVLETP 78 (337)
T ss_pred CCCCCCCCcCcCCcCCccccccCCCCcccccCCCC--CcceeEeeeeccCCeEEEEecCCCCCccCCCeEEEeEEEEeCC
Confidence 58999999999999999999999999999999986 5599999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEE
Q psy16472 120 PMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRV 199 (630)
Q Consensus 120 p~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~ 199 (630)
||+|+|+++|.+||+||++++|+||++|++++.|+||++|+++++++|.+ ++++|+. ++|.+||+
T Consensus 79 Pm~V~gir~Y~~~~~Gl~~~~evwa~~l~~~~~Rr~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~vR~ 143 (337)
T PRK04231 79 PMRVAAIRAYEKDPYGLKVLTEVWAEDLDKELERRITLPKKDEKKKAFEK-------------LLKLLEE--GKIVDVRV 143 (337)
T ss_pred CeEEEEEEEEeECCCCcEEEEEEecccchHHHhhhccccccchhhHHHHH-------------HHHHhhc--CCeeEEEE
Confidence 99999999999999999999999999999999999999999999888832 2333432 67899999
Q ss_pred EEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccc
Q psy16472 200 IAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279 (630)
Q Consensus 200 i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvP 279 (630)
|+|||| ++++
T Consensus 144 i~~Tqp------------------------------------~~~~---------------------------------- 153 (337)
T PRK04231 144 IVHTQP------------------------------------KLVT---------------------------------- 153 (337)
T ss_pred EEEech------------------------------------hhcc----------------------------------
Confidence 999996 4444
Q ss_pred cceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEE
Q psy16472 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDC 359 (630)
Q Consensus 280 V~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDV 359 (630)
++++|||||||+||||+++++|+|||+++||++|+++++|++||+|||
T Consensus 154 --------------------------------~l~kKkp~i~Ei~v~Gg~i~~k~~~a~~llG~~i~v~dvF~~Ge~VDV 201 (337)
T PRK04231 154 --------------------------------GVPKKKPEIMEIRIGGGSVEERLEYAKELLGKEISISDVFKEGQLVDV 201 (337)
T ss_pred --------------------------------CCCCCCCCEEEEeecCCCHHHHHHHHHHhcCCccchhhhccCCCEEEE
Confidence 478999999999999999999999999999999999999999999999
Q ss_pred EEEeeccceeeeEEeeccCCCCCcCcC--CcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCc
Q psy16472 360 IGVTKGKGFKGVTSRWHTKKLPRKTHK--GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGK 437 (630)
Q Consensus 360 TgVTKGKGYqGVqkRwG~kk~p~Kthk--GhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf 437 (630)
+|+|||+||||||+|||++++|++++. +||++||||+|+|+||+++++|+|||||+++|++|++|+++++
T Consensus 202 ~gvTKGKGfqGvvKRwg~~~~p~~Hg~~~~~R~~GsiG~~~P~rV~~~~~maGqmG~~~rT~~N~~I~kI~~-------- 273 (337)
T PRK04231 202 IAVTKGKGFQGVVKRWGVKLLPRKHKRRGGSRHIGTLGPWNPSRVMWTVPQAGQMGFHQRTEYNKRILKIGD-------- 273 (337)
T ss_pred EEEEeCCccccCeeccCcCCCCCccCCCCCCCCCcccCCCCCCcccCCCccCCCCCCceEEEecCEEEEEcC--------
Confidence 999999999999999999999955432 7999999999999999999999999999999999999999984
Q ss_pred eeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEe
Q psy16472 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517 (630)
Q Consensus 438 ~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~ 517 (630)
+ ..+||
T Consensus 274 -----------------------------------------------------------------~---------~~~It 279 (337)
T PRK04231 274 -----------------------------------------------------------------D---------GDEIT 279 (337)
T ss_pred -----------------------------------------------------------------C---------ccccc
Confidence 1 03799
Q ss_pred cCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEcccccc
Q psy16472 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIA 579 (630)
Q Consensus 518 p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~G 579 (630)
|||||+|||+|+|||||||||||||++++|+||++++++ +.++++|+|+||||+||||
T Consensus 280 P~GGF~hYG~V~~~~ilvKGsVPG~~kr~v~lr~air~~----~~~~~~p~i~yis~~SkqG 337 (337)
T PRK04231 280 PKGGFLHYGLVRNDYVLIKGSVPGPAKRLIRLRPAIRPP----EPPVEAPEITYVSTESKQG 337 (337)
T ss_pred cCCCccccccccCCEEEEEecccCCCCceEEEehhhccC----cccccCCcceEEeCcCcCC
Confidence 999999999999999999999999999999999998665 4688899999999999997
No 4
>TIGR03626 L3_arch archaeal ribosomal protein L3. This model describes exclusively the archaeal class of ribosomal protein L3. A separate model (TIGR03625) describes the bacterial/organelle form, and both belong to Pfam family pfam00297. Eukaryotic proteins are excluded from this model.
Probab=100.00 E-value=4.9e-104 Score=813.10 Aligned_cols=328 Identities=40% Similarity=0.692 Sum_probs=298.3
Q ss_pred CCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEE
Q psy16472 44 SAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVI 123 (630)
Q Consensus 44 s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~v 123 (630)
|+||||||||+|||||++++++|++||+|| .++||+||+|||||||||++++|||+|+++++|+++||||||||||+|
T Consensus 1 ~~PR~GSlgf~PRKRa~~~~~rirswP~~d--~~~~l~~F~GyKaGMTHvv~~~drp~S~~~gkEv~~~VTviEtPPm~v 78 (330)
T TIGR03626 1 HRPRRGSLAFSPRKRAKRIVPRIRSWPEVD--GEPKLQGFAGYKAGMTHVIMVDDRKNSPTEGKEISVPVTVLEAPPLRV 78 (330)
T ss_pred CCCCcccCCcCCccccccCCCCcccccCCC--CCceeeeeeeeccCCeEEEEecCCCCCCcCCCeEEeeeEEEecCCeEE
Confidence 689999999999999999999999999998 366999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEee
Q psy16472 124 VGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203 (630)
Q Consensus 124 vg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~t 203 (630)
+|+++|.+||+||++++|+||++|++||.|+||+.. +|..+ +++++.++.+.++|.+||+|+||
T Consensus 79 ~gir~Y~~t~~Gl~~l~~vwa~~l~~e~~r~~~~~k-------------~~~~~---~~~~~~~~~l~~~~~~iRvi~~T 142 (330)
T TIGR03626 79 AAIRAYGKDPYGLKVLTEVWANNLDKELSRKITLPK-------------NYDVE---EKLEKIEELLENDADDVRLIVHT 142 (330)
T ss_pred EEEEEEEECCCCcEEEEEEeeccCcHHHhhcccccc-------------ccchh---hHHHHHHHHHhcCceEEEEEEEe
Confidence 999999999999999999999999999999998631 11111 23455555566668999999999
Q ss_pred cchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCcccccee
Q psy16472 204 QNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 283 (630)
Q Consensus 204 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~V 283 (630)
|| ++++
T Consensus 143 qp------------------------------------~~~~-------------------------------------- 148 (330)
T TIGR03626 143 QP------------------------------------KLVT-------------------------------------- 148 (330)
T ss_pred cc------------------------------------cccc--------------------------------------
Confidence 96 4444
Q ss_pred eccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEe
Q psy16472 284 FAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVT 363 (630)
Q Consensus 284 f~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVT 363 (630)
++++||||||||||||+++++|+|||+++||++|+++++|++||+|||+|+|
T Consensus 149 ----------------------------~~~kKkp~imEi~v~Gg~i~~k~~~a~~~lG~~i~v~dvF~~Ge~VDV~gvT 200 (330)
T TIGR03626 149 ----------------------------GVPKKKPEIMEIRIGGGSVEERFEYALSILGKEISVSDVFKEGQLVDVIAVT 200 (330)
T ss_pred ----------------------------CcccCCccEEEEeecCCCHHHHhHhhHhcCCcEEehhheecCCCEEEEEEEE
Confidence 4788999999999999999999999999999999999999999999999999
Q ss_pred eccceeeeEEeeccCCCCCcC--cCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCceeee
Q psy16472 364 KGKGFKGVTSRWHTKKLPRKT--HKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVT 441 (630)
Q Consensus 364 KGKGYqGVqkRwG~kk~p~Kt--hkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf~Gv~ 441 (630)
||+||||||+|||++++|+++ +++||++||||+|+|+||+++++|+|||||+++|++|++|+++|+-
T Consensus 201 KGKGfqGvvKRwg~~~~p~~hg~~~~~R~~GsiG~~~P~rV~~~~~maGqmG~~~rT~~N~~I~kI~~e----------- 269 (330)
T TIGR03626 201 KGKGFQGVVKRWGVKLLPRKHKRRKGGRHIGTLGPWTPSRVRWTVPQAGQMGYHQRTEYNKRILKIGED----------- 269 (330)
T ss_pred cCCccccCeeccccCCCCCccCCCCCCCCCcccCCCCCCcccCCcccCCCCCCceEEEecCEEEEEcCc-----------
Confidence 999999999999999999544 4589999999999999999999999999999999999999999941
Q ss_pred eccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCC
Q psy16472 442 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGG 521 (630)
Q Consensus 442 KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~gg 521 (630)
..+||||||
T Consensus 270 -----------------------------------------------------------------------~~~ItP~GG 278 (330)
T TIGR03626 270 -----------------------------------------------------------------------GDEITPKGG 278 (330)
T ss_pred -----------------------------------------------------------------------cccccccCC
Confidence 037999999
Q ss_pred CCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEcccc
Q psy16472 522 FPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADK 577 (630)
Q Consensus 522 f~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK 577 (630)
|+|||+|+|||||||||||||++++|+||++++++ +.++++|+|+||||+||
T Consensus 279 F~~YG~Vk~~~ilvKGsVPG~~~r~v~lr~a~~~~----~~~~~~p~i~yist~Sk 330 (330)
T TIGR03626 279 FVNYGLVRNDYVLIKGSVPGPSKRLIRLRDAIRPP----KPPEGAPEITYISLESK 330 (330)
T ss_pred ccccccccCCEEEEEecCcCCCCceEEEehhhccC----cccccCCcceEEeCCCC
Confidence 99999999999999999999999999999999655 56888999999999997
No 5
>PF00297 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR000597 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L3 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L3 is known to bind to the 23S rRNA and may participate in the formation of the peptidyltransferase centre of the ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities includes bacterial, red algal, cyanelle, mammalian, yeast and Arabidopsis thaliana L3 proteins; archaeal Haloarcula marismortui HmaL3 (HL1), and yeast mitochondrial YmL9 [, , , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3UZ8_E 2X9U_E 3UZ1_E 3KNM_E 4ABS_E 2WDI_E 3UYG_E 4DHC_E 2J01_E 2Y11_E ....
Probab=100.00 E-value=3.2e-65 Score=516.41 Aligned_cols=257 Identities=43% Similarity=0.750 Sum_probs=216.0
Q ss_pred eccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhh--hhhHH
Q psy16472 87 KAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW--YKSRQ 164 (630)
Q Consensus 87 Kagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~--~k~~~ 164 (630)
|||||||++++|||+|++++++++.||||||+|||.|++++.|.++++||++++++|++++++++.|++++++ |++.+
T Consensus 1 K~GMT~v~~~~~~~~s~~~~~g~~~pVTVle~~p~~V~~ir~~~~~~~G~~~~~~~~~~~~~~~~~r~~~~~~~g~~a~~ 80 (263)
T PF00297_consen 1 KVGMTHVFMIDDRPGSPTEGKGVFVPVTVLEVPPCVVVGIRTYEDTNDGLKAVQEVWAEHISDDLKRRIYKNKDGYKAVQ 80 (263)
T ss_dssp EEEEEEEEEEB-STTSTTTTSEEEEEEEEEEE--EEEEEEEEEEEETTEEEEEEEEESS--STHHHGTCTSTTSSCHCCE
T ss_pred CCcceEEEEecCcCCCccCCCCEEEEEEEEEECCeEEEEEEeEecCCCcceeeEEEeccccccccceeeecccccchhhh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999774 22112
Q ss_pred HHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHh
Q psy16472 165 KAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLL 244 (630)
Q Consensus 165 ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (630)
.. +..+...+..+|+|.|||+. .+
T Consensus 81 ~~--------------------~~~~~~~~~~~~~~~~~~~~------------------------------------~~ 104 (263)
T PF00297_consen 81 LG--------------------FGEKKEKRVSKRLLGHFQKA------------------------------------GV 104 (263)
T ss_dssp EC--------------------CCHHCCSTSCCECCEEHHGG------------------------------------GS
T ss_pred hh--------------------hhhccccccchhhhhccccc------------------------------------cc
Confidence 11 11223457788999999951 11
Q ss_pred hhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEE
Q psy16472 245 KKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQ 324 (630)
Q Consensus 245 ~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiq 324 (630)
.+++|+++|+||+
T Consensus 105 -------------------------------------------------------------------~i~~~k~~i~E~~ 117 (263)
T PF00297_consen 105 -------------------------------------------------------------------PIPKKKPHIMEFR 117 (263)
T ss_dssp -------------------------------------------------------------------SSS-CSSEEEEEE
T ss_pred -------------------------------------------------------------------chhhccceeEEec
Confidence 2457999999999
Q ss_pred eCCCChhhhhHHhhhcCC--ceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC-C-cccccccCCCCCc
Q psy16472 325 LNGGSVADKIAWARQHLE--QPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK-G-LRKVACIGAWHPS 400 (630)
Q Consensus 325 v~gg~~~~~~e~A~~lLG--KkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk-G-hRk~GsIG~~~P~ 400 (630)
++++++++++|||.++|+ ++|+++|+|++||+|||+++|||||||||||||||+++| ++|+ + ||++||||+|+|+
T Consensus 118 v~~~~~~~~~~~a~~~l~~G~~i~v~dvF~~Gq~VDV~gvTKGKGFqGv~KR~gf~~~p-~sHg~~~hR~~GsiG~~~Pg 196 (263)
T PF00297_consen 118 VSGGDVEEKLEYAKELLGVGKEIKVNDVFKEGQYVDVIGVTKGKGFQGVMKRWGFKGGP-ASHGSSKHRKPGSIGAWTPG 196 (263)
T ss_dssp CESSSHHHHHHHHHHHCSCSSEBSCCTTSSTTSEEEEEEEE-EEEEETHHHHCSS--S--SSSSSTTSSSSS-SSCSSSS
T ss_pred ccccChhHhhhhhhhhcCccceeehhheecccceEEEEEeecCccccccccccCCCccC-CCCCCcccCCCCcccccccc
Confidence 999999999999988877 999999999999999999999999999999999999999 5554 4 9999999999999
Q ss_pred ceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCceeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCc
Q psy16472 401 RVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQ 480 (630)
Q Consensus 401 RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~ 480 (630)
||+++++|||||||+.+|++|++|+++++
T Consensus 197 rV~~g~kmaGqmG~~~rT~~Nl~I~~i~~--------------------------------------------------- 225 (263)
T PF00297_consen 197 RVFKGKKMAGQMGNHRRTEQNLRIVKIDD--------------------------------------------------- 225 (263)
T ss_dssp SCGTTSTSSEEESSSEEEEEEEEEEEEET---------------------------------------------------
T ss_pred eeecccccCccccceEEEecCcEEEEeCC---------------------------------------------------
Confidence 99999999999999999999999999994
Q ss_pred CCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEE
Q psy16472 481 KGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550 (630)
Q Consensus 481 mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir 550 (630)
. .+|||+|||+|||+|++||||||||||||++++|+||
T Consensus 226 ----------------------~----------~~i~p~ggf~~yG~v~~n~ilvKGsVPG~~~~~V~iR 263 (263)
T PF00297_consen 226 ----------------------D----------KEINPKGGFKHYGLVENNLILVKGSVPGPKKRLVKIR 263 (263)
T ss_dssp ----------------------S----------SSSSSTT-BTTTB--TTTEEEEES-TSSSTTEEEEEE
T ss_pred ----------------------C----------ccccCCCCceeEeeecCCEEEEeccccCCCCceEEeC
Confidence 0 2699999999999999999999999999999999997
No 6
>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-52 Score=408.52 Aligned_cols=210 Identities=36% Similarity=0.542 Sum_probs=178.6
Q ss_pred EeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhh
Q psy16472 80 LTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNW 159 (630)
Q Consensus 80 l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~ 159 (630)
+++|+|||+|||||+++ ++ ++.||||||+||+.|+++..|. ++ |+. ..++|+++ |+.
T Consensus 1 ~~G~~G~KvGMT~vf~~--~g--------~~vPVTVie~~p~~V~~vkt~e-~d-Gy~-a~qv~~~~------~k~---- 57 (218)
T COG0087 1 MLGFLGYKVGMTHVFDE--RG--------ISVPVTVIEVPPNVVVQVKTYE-TD-GYR-AVQVGAGD------RKA---- 57 (218)
T ss_pred CcccceEeccceEEEcc--CC--------cEEEEEEEEcCCcEEEEEEecc-cC-CcE-EEEEeecc------eee----
Confidence 36899999999999987 33 7999999999999999999999 66 888 89999987 100
Q ss_pred hhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhH
Q psy16472 160 YKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHV 239 (630)
Q Consensus 160 ~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (630)
..+.|.++++|+
T Consensus 58 ----------------------------------~~~~k~~~g~~~---------------------------------- 69 (218)
T COG0087 58 ----------------------------------KRVNKPLVGHFA---------------------------------- 69 (218)
T ss_pred ----------------------------------ehhccceeeeec----------------------------------
Confidence 345667778874
Q ss_pred HHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCce
Q psy16472 240 QMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319 (630)
Q Consensus 240 ~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~ 319 (630)
+ +..+|+++
T Consensus 70 -----k------------------------------------------------------------------~~~~~k~~ 78 (218)
T COG0087 70 -----K------------------------------------------------------------------AGVKPKRH 78 (218)
T ss_pred -----c------------------------------------------------------------------cCCCCCCe
Confidence 1 25689999
Q ss_pred EEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcCCcccccccCCCCC
Q psy16472 320 LMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHP 399 (630)
Q Consensus 320 i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~KthkGhRk~GsIG~~~P 399 (630)
|+||++++.++++++|||.+++ .|+|++||+|||+++||||||||+||||||+
T Consensus 79 l~E~rv~~~~~~~~~e~g~ei~------~dvF~~g~~VDV~gvTKGKGF~G~~KR~gf~--------------------- 131 (218)
T COG0087 79 LAEFRVGGGDVAEKFEVGQEIT------VDVFKEGELVDVTGVTKGKGFQGVMKRWGFK--------------------- 131 (218)
T ss_pred EEEEEecCccccceechhhhhc------hhhccCCCEEEEEEEecccccceeeeecccc---------------------
Confidence 9999999998888888766655 4999999999999999988877766655554
Q ss_pred cceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCceeeeeccccCCCCCCCCCC--CCCCCccC-CCCCCCcccCCC
Q psy16472 400 SRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKG--LRKVACIG-AWHPSRVQFTVA 476 (630)
Q Consensus 400 ~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf~Gv~KR~~f~~~p~shg~~--hR~~GsiG-~~~P~rV~~g~k 476 (630)
++|+|||++ ||++|||| +|+|+|||||++
T Consensus 132 ------------------------------------------------~~p~sHg~~~~hR~~GSiG~~~~P~rV~~g~k 163 (218)
T COG0087 132 ------------------------------------------------GGPASHGSSLSHRRPGSIGQRQTPGRVFKGKK 163 (218)
T ss_pred ------------------------------------------------cCCcccCCCccccCCcccCCCCCCCceeCCCc
Confidence 455677764 99999999 588999999999
Q ss_pred CCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhh
Q psy16472 477 RAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLK 556 (630)
Q Consensus 477 m~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~ 556 (630)
||||||++++|+| | |++++||+ |+||||||||||||++++|.||+|+++.
T Consensus 164 maG~mG~~~vTvq-------------N-------l~Vv~id~----------e~~~ilVkGaVPG~~k~~v~vr~a~k~~ 213 (218)
T COG0087 164 MAGHMGNERVTVQ-------------N-------LEVVKVDV----------ENNLILVKGAVPGAKKRLVVVRPAVKAK 213 (218)
T ss_pred cCccCCCceEEEE-------------e-------eEEEEEcC----------CCCEEEEecccCCCCCceEEEehhhccC
Confidence 9999999999999 7 77799997 9999999999999999999999999655
No 7
>CHL00143 rpl3 ribosomal protein L3; Validated
Probab=100.00 E-value=2.4e-50 Score=395.84 Aligned_cols=181 Identities=19% Similarity=0.267 Sum_probs=169.2
Q ss_pred hhcCCceecccccc-cCCcEEEEEEEeec------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCcc
Q psy16472 338 RQHLEQPIPVGQVF-AQDEMIDCIGVTKG------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPSR 401 (630)
Q Consensus 338 ~~lLGKkIgmtqVF-~~Ge~VDVTgVTKG------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~R 401 (630)
.++||+||+||++| +.|+.||||++..+ |||+++|.+++..+ +++.++ ||++++++ .|.|
T Consensus 3 ~glig~KiGMt~~f~~~G~~vpvTvl~~~~~~V~~~kt~e~dGY~avqvg~~~~~-~k~~~K~~~G~f~ka~v---~p~r 78 (207)
T CHL00143 3 IGLLGTKIGMTQIFDETGNAIPVTILKVGPCVITQIKTLTTDGYNAIQIGYKQVS-TKKLTKPQLGHLQKSNV---PPLK 78 (207)
T ss_pred ceEEEEEccceEEECCCCCEEEEEEEEECCeEEEEEecCCCCCcEEEEEeeeecc-cccCChhhcchhHHcCC---Ccce
Confidence 46899999999999 69999999999999 99999999999876 656766 99999874 7999
Q ss_pred eEEeEeecCcCCCeeeeEEeceEEEeeeeeec-----CCCceeeeeccccCCCCCCCCC-CCCCCCccCCC-CCCCcccC
Q psy16472 402 VQFTVARAGQKGYHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTHK-GLRKVACIGAW-HPSRVQFT 474 (630)
Q Consensus 402 VlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg~-~hR~~GsiG~~-~P~rV~~g 474 (630)
+++||+.....+|++++++++++|++||+||| |||||||||||||+++|+|||+ .||++||||++ +|||||||
T Consensus 79 ~l~Efrv~~~~~~~vG~~l~v~~F~~Gq~VDV~g~sKGKGF~GvmKR~gF~g~pasHGs~~HR~~GSiG~~~~PgRV~kG 158 (207)
T CHL00143 79 YLKEFRVKSSEEFEVGQPLTVDAFSVGQLVNVSGKSIGKGFAGLQKRHNFSRGPMTHGSKNHRAPGSIGAGTTPGRVYPG 158 (207)
T ss_pred EEEEEEcCCcccCCCCCEEEhhhccCCCEEEEEEEecCCcceeeeEeeccCCCCCccCCCCCCCCcccCCCCCCCeEcCC
Confidence 99999987766799999999999999999999 9999999999999999999996 69999999997 59999999
Q ss_pred CCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEec
Q psy16472 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552 (630)
Q Consensus 475 ~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~ 552 (630)
+|||||||++++|++ | |++++||+ |+|+|+||||||||++++|.|+++
T Consensus 159 kKMpG~mG~~~~Tv~-------------n-------l~Vv~vd~----------e~nli~VkGsVPG~~g~~v~i~~~ 206 (207)
T CHL00143 159 KKMAGRLGNKKVTIK-------------N-------LKILKVDS----------ENNLLVLKGSVPGKPGNLLSISPS 206 (207)
T ss_pred CccCCCCCCeeEEEe-------------c-------cEEEEEeC----------CCCEEEEEecCcCCCCCEEEEEEC
Confidence 999999999999999 7 77899999 999999999999999999999985
No 8
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial. This model describes bacterial (and mitochondrial and chloroplast) class of ribosomal protein L3. A separate model describes the archaeal form, where both belong to Pfam family pfam00297. The name is phrased to meet the needs of bacterial genome annotation. Organellar forms typically will have transit peptides, N-terminal to the region modeled here.
Probab=100.00 E-value=1.2e-48 Score=382.45 Aligned_cols=178 Identities=22% Similarity=0.344 Sum_probs=166.0
Q ss_pred hcCCceecccccc-cCCcEEEEEEEeec------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCcce
Q psy16472 339 QHLEQPIPVGQVF-AQDEMIDCIGVTKG------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPSRV 402 (630)
Q Consensus 339 ~lLGKkIgmtqVF-~~Ge~VDVTgVTKG------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~RV 402 (630)
++||+||+||++| +.|+.||||++..+ |||.+||.+++..+ +++.++ ||++++++ .|.|+
T Consensus 1 Glig~KiGMt~if~~~G~~ipvTVl~v~~~~V~q~kt~e~dGY~AvqvG~~~~~-~~~~~Kp~~G~f~Kag~---~pkr~ 76 (202)
T TIGR03625 1 GLLGKKVGMTQIFTEDGKAVPVTVIEVGPNVVTQVKTVEKDGYSAVQLGFGEKK-EKRVNKPEAGHFAKAGV---EPKRH 76 (202)
T ss_pred CccEEecceeEEECCCCcEEEEEEEEeCCcEEEEEeCCCCCCcEEEEEeccccc-cccCChhhhhHHHHcCC---CcCcE
Confidence 4799999999999 58999999999999 99999999999876 656766 89999885 68999
Q ss_pred EEeEeecCcCCCeeeeEEeceEEEeeeeeec-----CCCceeeeeccccCCCCCCCCC--CCCCCCccCCCC-CCCcccC
Q psy16472 403 QFTVARAGQKGYHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTHK--GLRKVACIGAWH-PSRVQFT 474 (630)
Q Consensus 403 lkEvRmaGQmGy~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg~--~hR~~GsiG~~~-P~rV~~g 474 (630)
++||+......+++++++++++|++||+||| ||||||+||||||+++|+|||+ .||++||||+++ |+|||||
T Consensus 77 l~Efrv~~~~~~~~G~~l~v~~F~~G~~VDV~g~skGKGFqGvmKR~gf~g~~~sHG~s~~hR~~GSiG~~~~PgrV~kg 156 (202)
T TIGR03625 77 LREFRVDDLEGYEVGDEITVDIFEAGQKVDVTGTSKGKGFAGVMKRHNFSGGPASHGNSKSHRAPGSIGQRQTPGRVFKG 156 (202)
T ss_pred EEEEEcCCcccCCCCCEEEeeeecCCCEEEEEEEEcCCcceeceEecccCCCCcccCCCCCCCCCCccCCCCCCCeEcCC
Confidence 9999987766799999999999999999999 9999999999999999999995 599999999975 9999999
Q ss_pred CCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEE
Q psy16472 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLR 550 (630)
Q Consensus 475 ~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir 550 (630)
++||||||++++|++ | |+|++||| |+|+||||||||||++++|.||
T Consensus 157 kkm~G~mG~~~~T~~-------------N-------l~V~~id~----------e~n~i~vkGsVPG~~~~~v~ir 202 (202)
T TIGR03625 157 KKMAGHMGNERVTVQ-------------N-------LEVVKVDA----------ERNLLLVKGAVPGAKGSLVLIK 202 (202)
T ss_pred CccCCCcCCeeEEEe-------------c-------cEEEEEcC----------CCCEEEEEecCcCCCCCEEEeC
Confidence 999999999999999 7 67799999 9999999999999999999985
No 9
>PRK00001 rplC 50S ribosomal protein L3; Validated
Probab=100.00 E-value=2.1e-48 Score=382.64 Aligned_cols=181 Identities=23% Similarity=0.337 Sum_probs=167.7
Q ss_pred hhcCCceecccccc-cCCcEEEEEEEeec------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCcc
Q psy16472 338 RQHLEQPIPVGQVF-AQDEMIDCIGVTKG------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPSR 401 (630)
Q Consensus 338 ~~lLGKkIgmtqVF-~~Ge~VDVTgVTKG------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~R 401 (630)
.++||+||+||++| +.|+.||||++..+ |||++||.+++..+ +++.++ ||++++++ .|.|
T Consensus 3 ~Glig~KiGMt~ifd~~G~~vpvTvl~v~~~~V~~~kt~e~dGY~avqvG~~~~~-~~~~~Kp~~G~f~kag~---~pkr 78 (210)
T PRK00001 3 KGILGKKVGMTQIFTEDGESIPVTVIEAGPNVVTQVKTVEKDGYNAVQLGFGDKK-EKRVNKPEAGHFAKAGV---EPKR 78 (210)
T ss_pred cEEEEEEecceEEECCCCCEEEEEEEEecCcEEEEEeCCCCCCcEEEEEeccccC-cccCCHHHhHHHHHcCC---Ccce
Confidence 46899999999999 58999999999999 99999999999876 667776 89999884 7999
Q ss_pred eEEeEeecCcCCCeeeeEEeceEEEeeeeeec-----CCCceeeeeccccCCCCCCCCC--CCCCCCccCCC-CCCCccc
Q psy16472 402 VQFTVARAGQKGYHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTHK--GLRKVACIGAW-HPSRVQF 473 (630)
Q Consensus 402 VlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg~--~hR~~GsiG~~-~P~rV~~ 473 (630)
+++||+. ..++++|+++.+++|++||+||| ||||||+||||||+++|+|||+ .||++||||++ +|+|||+
T Consensus 79 ~l~Efr~--~~~~~~G~~l~v~~F~~G~~VDV~g~tKGKGFqGvmKR~gf~g~p~sHG~s~~hR~~GSiG~~~~PgrV~k 156 (210)
T PRK00001 79 HLREFRV--VEEYEVGQEITVDIFEAGQKVDVTGTSKGKGFAGVIKRHNFSGGPASHGNSRSHRRPGSIGARQTPGRVFK 156 (210)
T ss_pred EEEEEcc--CCCCCCCCEEeehhccCCCEEEEEEEEcCCcceeceEecccCCCCCcCCcCcCCcCCcccCCCCCCCeECC
Confidence 9999993 35699999999999999999999 9999999999999999999994 59999999996 5999999
Q ss_pred CCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEech
Q psy16472 474 TVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMK 553 (630)
Q Consensus 474 g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~i 553 (630)
|++||||||++++|++ | |+|++||+ ++||||||||||||++++|.||+++
T Consensus 157 gkkmaG~mG~~~~T~~-------------n-------l~V~~i~~----------~~nli~vkGsVPG~~~~~v~ir~a~ 206 (210)
T PRK00001 157 GKKMAGHMGNERVTVQ-------------N-------LEVVKVDA----------ERNLLLVKGAVPGAKGGLVIIKPAV 206 (210)
T ss_pred CcccCCCCCCeEEEEe-------------C-------CEEEEEcC----------CCCEEEEEecCcCCCCCEEEEEeee
Confidence 9999999999999999 6 77799999 9999999999999999999999987
Q ss_pred h
Q psy16472 554 L 554 (630)
Q Consensus 554 l 554 (630)
.
T Consensus 207 k 207 (210)
T PRK00001 207 K 207 (210)
T ss_pred e
Confidence 4
No 10
>PTZ00103 60S ribosomal protein L3; Provisional
Probab=100.00 E-value=1.4e-44 Score=378.45 Aligned_cols=231 Identities=35% Similarity=0.509 Sum_probs=209.8
Q ss_pred ccccccCCCCCCCCCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeee
Q psy16472 9 SSHRKFSAPRHGSMGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFI 84 (630)
Q Consensus 9 ~~~~~f~~p~h~~~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~ 84 (630)
||||||++||||||||+|+|||+||+ ++++|.++.+.|.| ||||| |+.||+.++....+
T Consensus 1 MshRk~~~PR~GSLgf~PRKRa~~~~~rvrswP~dd~~~~p~L~aF~Gy-----------------KAGMTHvv~~~drp 63 (390)
T PTZ00103 1 MSHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGY-----------------KAGMTHIVRDVDRP 63 (390)
T ss_pred CCCCCCCCCCCCcCCcCCccccccCCCCcccCCCcCCCCCceEeeeeee-----------------ccCCeEEEEecCCC
Confidence 89999999999999999999999999 99999999988888 99999 99999999999999
Q ss_pred eeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhccccChHHHhhhhhhhhhhH
Q psy16472 85 GYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHLSQECRRRFYKNWYKSR 163 (630)
Q Consensus 85 GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~~~~~~r~~~k~~~k~~ 163 (630)
|.+..-.+|+ |.|+.++++++-.+.|+||+.++.+.+.|.+ |+++.+++|.++||++|||+.++++
T Consensus 64 ~S~~~~kEv~-------------~~VTIiEtPPm~V~GirgY~~tp~Gl~~l~~vwA~~l~~e~~rr~yk~~~~s~k~af 130 (390)
T PTZ00103 64 GSKLHKKEVV-------------EAVTIIEAPPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYKNWYKSKKKAF 130 (390)
T ss_pred CCCcCCCeEE-------------eeeEEEeCCCeEEEEEEEEEECCCCcEEeEEEeeccCcHHHhhhhccccchhhhhhh
Confidence 9999888999 9999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHH
Q psy16472 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243 (630)
Q Consensus 164 ~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (630)
.|.-.++..+... +.+++.|+++|..+++|.+++..... +
T Consensus 131 ~k~~~~~~~~~~~----~~~~~~l~k~~~~IRvi~hTqp~~~~------------------------------------l 170 (390)
T PTZ00103 131 TKYKKFAATKKAE----ERTLKRIKKYCSVIRVIAHTQPSKLP------------------------------------L 170 (390)
T ss_pred hhhhhhhcchhhH----HHHHHHHhhcccEEEEEEEcchhhcC------------------------------------c
Confidence 8877766432222 23456688899899999999987431 1
Q ss_pred hhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhh--hhhhhhh
Q psy16472 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLK 312 (630)
Q Consensus 244 l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m--~g~kllg 312 (630)
-. |||||||||||||++++|++||.++||++|+|++||.++|+||||++|||+||+|+| ||++.+-
T Consensus 171 ~k---Kkp~imEiqv~GGsv~~k~d~a~~llgk~i~v~dvF~~ge~VDVigvTKGKGfqGvvKRwg~~~~p 238 (390)
T PTZ00103 171 GQ---KKAHVMEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEMIDVIGVTKGHGFEGVVKRWGVTRLP 238 (390)
T ss_pred CC---cCccEEEEeecCCCHHHHHHHHHHHhcCeechhhhccCCCEeeeEEEEcCCccccCeeccccCCCC
Confidence 23 799999999999999999999999999999999999999999999999999999998 7887654
No 11
>KOG3141|consensus
Probab=100.00 E-value=9.8e-44 Score=359.36 Aligned_cols=218 Identities=19% Similarity=0.184 Sum_probs=190.1
Q ss_pred hhcCCceecccccc-cCCcEEEEEEEeec-------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCc
Q psy16472 338 RQHLEQPIPVGQVF-AQDEMIDCIGVTKG-------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPS 400 (630)
Q Consensus 338 ~~lLGKkIgmtqVF-~~Ge~VDVTgVTKG-------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~ 400 (630)
.++++.|++|...| +.|+.|+||.+..- +||-+||.++|... |++..+ ||+..+.+ .|.
T Consensus 63 ~GvI~~K~GMmp~w~k~G~ri~~TiL~v~d~~Vi~~~t~E~~~g~~avqVG~g~~~-p~kltk~~~g~f~~~gv---~pK 138 (310)
T KOG3141|consen 63 VGVIARKLGMMPLWDKDGERIPVTILQVDDNHVIKYITPEAKGGYFAVQVGYGTVK-PKKLTKAELGHFRSAGV---PPK 138 (310)
T ss_pred ceeEEEeccCchhhccCCCEEEEEEEEEecceEEEEechhhcCCeEEEEeccccCC-hHHhhHHHHHHHHHcCC---Chh
Confidence 36788999999999 59999999887665 89999999999988 656555 78877664 799
Q ss_pred ceEEeEeecCcCC-CeeeeEEeceEEEeeeeeec-----CCCceeeeeccccCCCCCCCCC--CCCCCCccCCC-CCCCc
Q psy16472 401 RVQFTVARAGQKG-YHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTHK--GLRKVACIGAW-HPSRV 471 (630)
Q Consensus 401 RVlkEvRmaGQmG-y~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg~--~hR~~GsiG~~-~P~rV 471 (630)
+.+.+|+.- ..+ ...+|-++.++|++|||||| ||||||+||||||+|+|||||. +||++||+|+. +||||
T Consensus 139 ~~l~eF~Vt-~~al~~pGt~l~~~hFk~GqyVDV~g~TigkGFqGvmKR~GFkG~pasHG~sksHR~~GS~G~~~~pgRV 217 (310)
T KOG3141|consen 139 RHLREFRVT-EEALLPPGTPLFARHFKPGQYVDVTGKTIGKGFQGVMKRHGFKGGPASHGTSKSHRRPGSIGQGTTPGRV 217 (310)
T ss_pred hhhheEeec-hhccCCCCcccchhhcCCCceEEEEeeEeccccccceeeccccCCccccCccccccCCccccCCCCCccc
Confidence 999999987 344 46799999999999999999 9999999999999999999996 59999999986 69999
Q ss_pred ccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEe
Q psy16472 472 QFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551 (630)
Q Consensus 472 ~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~ 551 (630)
|+|+||||||||++||++ | |.|++||+ ++|+||||||||||++++|.|.+
T Consensus 218 ~pGrKMpGhMG~~~rtik-------------~-------LkV~kId~----------~~nvi~VkGsVpG~~g~~V~I~D 267 (310)
T KOG3141|consen 218 WPGRKMPGHMGNEWRTIK-------------G-------LKVWKIDT----------ELNVIWVKGSVPGPKGNLVKIKD 267 (310)
T ss_pred ccCCcCCcccCcceEEEe-------------e-------eEEEEEcC----------CceEEEEecccCCCCCCEEEEEe
Confidence 999999999999999988 6 67789999 99999999999999999999999
Q ss_pred chhhhhhhhhcccCCceEEEEEccccccccccccCCCCCccccccCCcee
Q psy16472 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 601 (630)
Q Consensus 552 ~il~~~R~kk~~l~eiqLk~IstsSK~GhgrfqLek~l~v~~vF~~~e~i 601 (630)
++++. ....++|..+|. |...++ +++|+.+.||..+.++
T Consensus 268 a~~~~----~~i~k~pfpt~~------~~~~ed-~~e~~~~~~~~~~s~s 306 (310)
T KOG3141|consen 268 AILPT----VDIPKNPFPTYE------GTIDED-PNELFSEKVFRFTSPS 306 (310)
T ss_pred ccccc----CCcccCCCCccc------CCCCCC-hhHhcchhhhccCCCc
Confidence 99776 345566777775 777777 8899999999887665
No 12
>PRK04231 rpl3p 50S ribosomal protein L3P; Reviewed
Probab=100.00 E-value=8.2e-36 Score=309.35 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=189.4
Q ss_pred ccccCCCCCCCCCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeeeee
Q psy16472 11 HRKFSAPRHGSMGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGY 86 (630)
Q Consensus 11 ~~~f~~p~h~~~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~Gy 86 (630)
||||++||||||||+|+|||++|+ ++++|.++. |.| ||+|| |+.||+.+......|.
T Consensus 1 ~~k~~~PRrGSlgf~PRKRa~~~~prirswP~~d~--~p~l~~F~Gy-----------------KaGMTHv~~~ddrp~S 61 (337)
T PRK04231 1 MRKIHRPRRGSLAFSPRKRAKSIVPRIRSWPEIDG--EPKLLGFAGY-----------------KAGMTHVIMIDDRPNS 61 (337)
T ss_pred CCCCCCCCcCcCCcCCccccccCCCCcccccCCCC--CcceeEeeee-----------------ccCCeEEEEecCCCCC
Confidence 799999999999999999999999 999999886 556 99999 9999999999999999
Q ss_pred eccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhccccChHHHhhhhhhhhhhHHH
Q psy16472 87 KAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHLSQECRRRFYKNWYKSRQK 165 (630)
Q Consensus 87 Kagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~~~~~~r~~~k~~~k~~~k 165 (630)
+..-.+|+ +.|+.++++++-.+.|+||...+.+.+-|.+ |++...++|.++++..++++..++.++
T Consensus 62 ~~~gkEi~-------------~~VTviEtPPm~V~gir~Y~~~~~Gl~~~~evwa~~l~~~~~Rr~~~~~~~~~~~~~~~ 128 (337)
T PRK04231 62 PTEGKEIF-------------VPVTVLETPPMRVAAIRAYEKDPYGLKVLTEVWAEDLDKELERRITLPKKDEKKKAFEK 128 (337)
T ss_pred ccCCCeEE-------------EeEEEEeCCCeEEEEEEEEeECCCCcEEEEEEecccchHHHhhhccccccchhhHHHHH
Confidence 98888888 8999999999999999999999999999998 999999999999999998887776655
Q ss_pred HhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhh
Q psy16472 166 AFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLK 245 (630)
Q Consensus 166 a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (630)
....+..+ .+.+ +++|.+++-.... -|+
T Consensus 129 ~~~~~~~~---------~~~~-------vR~i~~Tqp~~~~------------------------------------~l~ 156 (337)
T PRK04231 129 LLKLLEEG---------KIVD-------VRVIVHTQPKLVT------------------------------------GVP 156 (337)
T ss_pred HHHHhhcC---------CeeE-------EEEEEEechhhcc------------------------------------CCC
Confidence 44443211 1222 5666666666420 156
Q ss_pred hhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhh--hhhhhhh
Q psy16472 246 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLK 312 (630)
Q Consensus 246 ~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m--~g~kllg 312 (630)
|||+||||||+|||++++|++||.++|+++|+|++||.++|+||||++||||||+|+| ||++.+.
T Consensus 157 --kKkp~i~Ei~v~Gg~i~~k~~~a~~llG~~i~v~dvF~~Ge~VDV~gvTKGKGfqGvvKRwg~~~~p 223 (337)
T PRK04231 157 --KKKPEIMEIRIGGGSVEERLEYAKELLGKEISISDVFKEGQLVDVIAVTKGKGFQGVVKRWGVKLLP 223 (337)
T ss_pred --CCCCCEEEEeecCCCHHHHHHHHHHhcCCccchhhhccCCCEEEEEEEEeCCccccCeeccCcCCCC
Confidence 7999999999999999999999999999999999999999999999999999999998 8888654
No 13
>TIGR03626 L3_arch archaeal ribosomal protein L3. This model describes exclusively the archaeal class of ribosomal protein L3. A separate model (TIGR03625) describes the bacterial/organelle form, and both belong to Pfam family pfam00297. Eukaryotic proteins are excluded from this model.
Probab=100.00 E-value=1.8e-35 Score=305.90 Aligned_cols=210 Identities=25% Similarity=0.314 Sum_probs=183.3
Q ss_pred CCCCCCCCCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccC
Q psy16472 15 SAPRHGSMGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGM 90 (630)
Q Consensus 15 ~~p~h~~~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagm 90 (630)
++||||||||+|+|||+||+ ++++|.++ .|.| ||+|| |+.||+.++.....|.+..-
T Consensus 1 ~~PR~GSlgf~PRKRa~~~~~rirswP~~d--~~~~l~~F~Gy-----------------KaGMTHvv~~~drp~S~~~g 61 (330)
T TIGR03626 1 HRPRRGSLAFSPRKRAKRIVPRIRSWPEVD--GEPKLQGFAGY-----------------KAGMTHVIMVDDRKNSPTEG 61 (330)
T ss_pred CCCCcccCCcCCccccccCCCCcccccCCC--CCceeeeeeee-----------------ccCCeEEEEecCCCCCCcCC
Confidence 68999999999999999999 99999988 4666 99999 99999999999999999888
Q ss_pred eEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhccccChHHHhhh-hhhhhhhHHHHhH
Q psy16472 91 THIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHLSQECRRRF-YKNWYKSRQKAFT 168 (630)
Q Consensus 91 thiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~~~~~~r~~-~k~~~k~~~ka~~ 168 (630)
.+|+ |.|+.++++++-.+.|+||..++.+.+-|.+ |++...++|++.++..= |.. .++.+
T Consensus 62 kEv~-------------~~VTviEtPPm~v~gir~Y~~t~~Gl~~l~~vwa~~l~~e~~r~~~~~k~~~~-~~~~~---- 123 (330)
T TIGR03626 62 KEIS-------------VPVTVLEAPPLRVAAIRAYGKDPYGLKVLTEVWANNLDKELSRKITLPKNYDV-EEKLE---- 123 (330)
T ss_pred CeEE-------------eeeEEEecCCeEEEEEEEEEECCCCcEEEEEEeeccCcHHHhhccccccccch-hhHHH----
Confidence 8898 8999999999999999999999999999998 99999999999997432 211 11111
Q ss_pred HhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhh
Q psy16472 169 KASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQ 248 (630)
Q Consensus 169 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q 248 (630)
.+++.|++.+..+++|.+++..... -|+ |
T Consensus 124 -------------~~~~~l~~~~~~iRvi~~Tqp~~~~------------------------------------~~~--k 152 (330)
T TIGR03626 124 -------------KIEELLENDADDVRLIVHTQPKLVT------------------------------------GVP--K 152 (330)
T ss_pred -------------HHHHHHhcCceEEEEEEEecccccc------------------------------------Ccc--c
Confidence 1344466556689999999988531 156 7
Q ss_pred hhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhh--hhhhhhh
Q psy16472 249 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLK 312 (630)
Q Consensus 249 Kkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m--~g~kllg 312 (630)
|||||||||||||++++|++||.++|+++|+|++||.++|+|||+++||||||+|+| ||++.+.
T Consensus 153 Kkp~imEi~v~Gg~i~~k~~~a~~~lG~~i~v~dvF~~Ge~VDV~gvTKGKGfqGvvKRwg~~~~p 218 (330)
T TIGR03626 153 KKPEIMEIRIGGGSVEERFEYALSILGKEISVSDVFKEGQLVDVIAVTKGKGFQGVVKRWGVKLLP 218 (330)
T ss_pred CCccEEEEeecCCCHHHHhHhhHhcCCcEEehhheecCCCEEEEEEEEcCCccccCeeccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999998 8888654
No 14
>PF00297 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR000597 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L3 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L3 is known to bind to the 23S rRNA and may participate in the formation of the peptidyltransferase centre of the ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities includes bacterial, red algal, cyanelle, mammalian, yeast and Arabidopsis thaliana L3 proteins; archaeal Haloarcula marismortui HmaL3 (HL1), and yeast mitochondrial YmL9 [, , , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3UZ8_E 2X9U_E 3UZ1_E 3KNM_E 4ABS_E 2WDI_E 3UYG_E 4DHC_E 2J01_E 2Y11_E ....
Probab=99.98 E-value=1.6e-33 Score=285.98 Aligned_cols=178 Identities=25% Similarity=0.329 Sum_probs=135.5
Q ss_pred eecccccc----------cC-CcEEEEEEEeec--------------cceeeeEEeecc---------------------
Q psy16472 344 PIPVGQVF----------AQ-DEMIDCIGVTKG--------------KGFKGVTSRWHT--------------------- 377 (630)
Q Consensus 344 kIgmtqVF----------~~-Ge~VDVTgVTKG--------------KGYqGVqkRwG~--------------------- 377 (630)
|++||+|| +. |..++||+|+.+ +||++++..|..
T Consensus 1 K~GMT~v~~~~~~~~s~~~~~g~~~pVTVle~~p~~V~~ir~~~~~~~G~~~~~~~~~~~~~~~~~r~~~~~~~g~~a~~ 80 (263)
T PF00297_consen 1 KVGMTHVFMIDDRPGSPTEGKGVFVPVTVLEVPPCVVVGIRTYEDTNDGLKAVQEVWAEHISDDLKRRIYKNKDGYKAVQ 80 (263)
T ss_dssp EEEEEEEEEEB-STTSTTTTSEEEEEEEEEEE--EEEEEEEEEEEETTEEEEEEEEESS--STHHHGTCTSTTSSCHCCE
T ss_pred CCcceEEEEecCcCCCccCCCCEEEEEEEEEECCeEEEEEEeEecCCCcceeeEEEeccccccccceeeecccccchhhh
Confidence 68999999 54 899999999988 555565555543
Q ss_pred -----CCCCCcCcC---CcccccccCCCCCcceEEeEeecCc----------CCCeeeeEEec-eEEEeeeeeec-----
Q psy16472 378 -----KKLPRKTHK---GLRKVACIGAWHPSRVQFTVARAGQ----------KGYHHRTELNK-KIYRMGAGIHT----- 433 (630)
Q Consensus 378 -----kk~p~Kthk---GhRk~GsIG~~~P~RVlkEvRmaGQ----------mGy~~GTEiNv-dIFKIG~~vdv----- 433 (630)
.+ .+...+ +|++++.++-..|.+.+.|++..|. ..+..|+++++ ++|++||+|||
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~k~~i~E~~v~~~~~~~~~~~a~~~l~~G~~i~v~dvF~~Gq~VDV~gvTK 159 (263)
T PF00297_consen 81 LGFGEKK-EKRVSKRLLGHFQKAGVPIPKKKPHIMEFRVSGGDVEEKLEYAKELLGVGKEIKVNDVFKEGQYVDVIGVTK 159 (263)
T ss_dssp ECCCHHC-CSTSCCECCEEHHGGGSSSS-CSSEEEEEECESSSHHHHHHHHHHHCSCSSEBSCCTTSSTTSEEEEEEEE-
T ss_pred hhhhhcc-ccccchhhhhcccccccchhhccceeEEecccccChhHhhhhhhhhcCccceeehhheecccceEEEEEeec
Confidence 22 112222 6888887652258999999999887 56888999999 99999999999
Q ss_pred CCCceeeeeccccCCCCCCCCCC-CCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccc
Q psy16472 434 KDGKVSVTSRWHTKKLPRKTHKG-LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLT 512 (630)
Q Consensus 434 gkGf~Gv~KR~~f~~~p~shg~~-hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~ 512 (630)
|||||||||||||+++|++||++ ||++||||+++|+|||+|++|||||||++||++ | |+
T Consensus 160 GKGFqGv~KR~gf~~~p~sHg~~~hR~~GsiG~~~PgrV~~g~kmaGqmG~~~rT~~-------------N-------l~ 219 (263)
T PF00297_consen 160 GKGFQGVMKRWGFKGGPASHGSSKHRKPGSIGAWTPGRVFKGKKMAGQMGNHRRTEQ-------------N-------LR 219 (263)
T ss_dssp EEEEETHHHHCSS--S-SSSSSTTSSSSS-SSCSSSSSCGTTSTSSEEESSSEEEEE-------------E-------EE
T ss_pred CccccccccccCCCccCCCCCCcccCCCCcccccccceeecccccCccccceEEEec-------------C-------cE
Confidence 99999999999999999999987 999999999999999999999999999999998 6 66
Q ss_pred eEEEecCCCCCcccccCCcEEEEecccc--c-CcCcEEEEEech
Q psy16472 513 EKSITPMGGFPHYGEVNNDFLMIKGCCM--G-PKKRVITLRKMK 553 (630)
Q Consensus 513 ~~~I~p~ggf~~yg~V~~n~i~vKGsVp--G-~k~~~v~ir~~i 553 (630)
|++||+ .+-|-.+|--+ | ..+.+|.|+=|+
T Consensus 220 I~~i~~-----------~~~i~p~ggf~~yG~v~~n~ilvKGsV 252 (263)
T PF00297_consen 220 IVKIDD-----------DKEINPKGGFKHYGLVENNLILVKGSV 252 (263)
T ss_dssp EEEEET-----------SSSSSSTT-BTTTB--TTTEEEEES-T
T ss_pred EEEeCC-----------CccccCCCCceeEeeecCCEEEEeccc
Confidence 789986 12222222221 1 257788888776
No 15
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial. This model describes bacterial (and mitochondrial and chloroplast) class of ribosomal protein L3. A separate model describes the archaeal form, where both belong to Pfam family pfam00297. The name is phrased to meet the needs of bacterial genome annotation. Organellar forms typically will have transit peptides, N-terminal to the region modeled here.
Probab=99.96 E-value=2.3e-30 Score=253.99 Aligned_cols=158 Identities=25% Similarity=0.368 Sum_probs=138.4
Q ss_pred CchhhHHHHHHHhhc--Cccccceeec-cceeeEEeeeecccccchhhhh---------------hhhhhcccCCceEEE
Q psy16472 261 GSVADKIAWARQHLE--QPIPVGQVFA-QDEMIDCIGVTKGKGFKGEMIA---------------MKLLKKRQKKAHLME 322 (630)
Q Consensus 261 G~i~~Kv~wa~~~lE--kqvPV~~Vf~-qde~idvigvtKgkGy~g~m~g---------------~kllg~~~KK~~i~E 322 (630)
|.|+.|++|++-+.| +.+|||.|+. +..++.+....+ +||.++++| ++....-.++++|.|
T Consensus 1 Glig~KiGMt~if~~~G~~ipvTVl~v~~~~V~q~kt~e~-dGY~AvqvG~~~~~~~~~~Kp~~G~f~Kag~~pkr~l~E 79 (202)
T TIGR03625 1 GLLGKKVGMTQIFTEDGKAVPVTVIEVGPNVVTQVKTVEK-DGYSAVQLGFGEKKEKRVNKPEAGHFAKAGVEPKRHLRE 79 (202)
T ss_pred CccEEecceeEEECCCCcEEEEEEEEeCCcEEEEEeCCCC-CCcEEEEEeccccccccCChhhhhHHHHcCCCcCcEEEE
Confidence 678999999998887 6999999999 788888776655 899998654 444333457899999
Q ss_pred EEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC---CcccccccCCCC-
Q psy16472 323 IQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWH- 398 (630)
Q Consensus 323 iqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~- 398 (630)
|++...+ ...+|++|++ ++|++||+|||+++|||+||+|||+||||+++| ++|+ .||.+||||+|+
T Consensus 80 frv~~~~--------~~~~G~~l~v-~~F~~G~~VDV~g~skGKGFqGvmKR~gf~g~~-~sHG~s~~hR~~GSiG~~~~ 149 (202)
T TIGR03625 80 FRVDDLE--------GYEVGDEITV-DIFEAGQKVDVTGTSKGKGFAGVMKRHNFSGGP-ASHGNSKSHRAPGSIGQRQT 149 (202)
T ss_pred EEcCCcc--------cCCCCCEEEe-eeecCCCEEEEEEEEcCCcceeceEecccCCCC-cccCCCCCCCCCCccCCCCC
Confidence 9997643 2369999999 999999999999999999999999999999998 7776 699999999995
Q ss_pred CcceEEeEeecCcCCCeeeeEEeceEEEeee
Q psy16472 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429 (630)
Q Consensus 399 P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~ 429 (630)
|+||+++.+||||||++.+|+.|++|++++.
T Consensus 150 PgrV~kgkkm~G~mG~~~~T~~Nl~V~~id~ 180 (202)
T TIGR03625 150 PGRVFKGKKMAGHMGNERVTVQNLEVVKVDA 180 (202)
T ss_pred CCeEcCCCccCCCcCCeeEEEeccEEEEEcC
Confidence 9999999999999999999999999999974
No 16
>CHL00143 rpl3 ribosomal protein L3; Validated
Probab=99.96 E-value=2.1e-30 Score=255.24 Aligned_cols=160 Identities=25% Similarity=0.324 Sum_probs=141.3
Q ss_pred cCCchhhHHHHHHHhhc--Cccccceeec-cceeeEEeeeecccccchhhhh---------------hhhhhcccCCceE
Q psy16472 259 NGGSVADKIAWARQHLE--QPIPVGQVFA-QDEMIDCIGVTKGKGFKGEMIA---------------MKLLKKRQKKAHL 320 (630)
Q Consensus 259 ngG~i~~Kv~wa~~~lE--kqvPV~~Vf~-qde~idvigvtKgkGy~g~m~g---------------~kllg~~~KK~~i 320 (630)
..|.+++|++|++-|.| ..+|||.|+. +..++++...++ +||.++++| ++....-.++++|
T Consensus 2 ~~glig~KiGMt~~f~~~G~~vpvTvl~~~~~~V~~~kt~e~-dGY~avqvg~~~~~~k~~~K~~~G~f~ka~v~p~r~l 80 (207)
T CHL00143 2 SIGLLGTKIGMTQIFDETGNAIPVTILKVGPCVITQIKTLTT-DGYNAIQIGYKQVSTKKLTKPQLGHLQKSNVPPLKYL 80 (207)
T ss_pred cceEEEEEccceEEECCCCCEEEEEEEEECCeEEEEEecCCC-CCcEEEEEeeeecccccCChhhcchhHHcCCCcceEE
Confidence 35899999999999987 8899999999 788888887776 999999654 4443334578999
Q ss_pred EEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC--CcccccccCCC-
Q psy16472 321 MEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK--GLRKVACIGAW- 397 (630)
Q Consensus 321 ~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk--GhRk~GsIG~~- 397 (630)
.||++...+ ...+|++|++ ++|++||+|||+++||||||+||||||||+++| ++|+ .||++||||++
T Consensus 81 ~Efrv~~~~--------~~~vG~~l~v-~~F~~Gq~VDV~g~sKGKGF~GvmKR~gF~g~p-asHGs~~HR~~GSiG~~~ 150 (207)
T CHL00143 81 KEFRVKSSE--------EFEVGQPLTV-DAFSVGQLVNVSGKSIGKGFAGLQKRHNFSRGP-MTHGSKNHRAPGSIGAGT 150 (207)
T ss_pred EEEEcCCcc--------cCCCCCEEEh-hhccCCCEEEEEEEecCCcceeeeEeeccCCCC-CccCCCCCCCCcccCCCC
Confidence 999997632 2369999999 789999999999999999999999999999999 7988 69999999999
Q ss_pred CCcceEEeEeecCcCCCeeeeEEeceEEEeee
Q psy16472 398 HPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429 (630)
Q Consensus 398 ~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~ 429 (630)
+|+||+++.+||||||++.+|+.|++|++++.
T Consensus 151 ~PgRV~kGkKMpG~mG~~~~Tv~nl~Vv~vd~ 182 (207)
T CHL00143 151 TPGRVYPGKKMAGRLGNKKVTIKNLKILKVDS 182 (207)
T ss_pred CCCeEcCCCccCCCCCCeeEEEeccEEEEEeC
Confidence 59999999999999999999999999999974
No 17
>PRK00001 rplC 50S ribosomal protein L3; Validated
Probab=99.96 E-value=9.6e-30 Score=250.95 Aligned_cols=157 Identities=27% Similarity=0.391 Sum_probs=137.5
Q ss_pred CCchhhHHHHHHHhhc--Cccccceeec-cceeeEEeeeecccccchhhhh---------------hhhhhcccCCceEE
Q psy16472 260 GGSVADKIAWARQHLE--QPIPVGQVFA-QDEMIDCIGVTKGKGFKGEMIA---------------MKLLKKRQKKAHLM 321 (630)
Q Consensus 260 gG~i~~Kv~wa~~~lE--kqvPV~~Vf~-qde~idvigvtKgkGy~g~m~g---------------~kllg~~~KK~~i~ 321 (630)
.|.|+.|++|++-+.| ..+|||.|+. +..++++...++ +||.++++| ++....-.++++|.
T Consensus 3 ~Glig~KiGMt~ifd~~G~~vpvTvl~v~~~~V~~~kt~e~-dGY~avqvG~~~~~~~~~~Kp~~G~f~kag~~pkr~l~ 81 (210)
T PRK00001 3 KGILGKKVGMTQIFTEDGESIPVTVIEAGPNVVTQVKTVEK-DGYNAVQLGFGDKKEKRVNKPEAGHFAKAGVEPKRHLR 81 (210)
T ss_pred cEEEEEEecceEEECCCCCEEEEEEEEecCcEEEEEeCCCC-CCcEEEEEeccccCcccCCHHHhHHHHHcCCCcceEEE
Confidence 5889999999998886 8999999999 788888887765 899999654 33333345789999
Q ss_pred EEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC---CcccccccCCC-
Q psy16472 322 EIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAW- 397 (630)
Q Consensus 322 Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~- 397 (630)
||+.+. ...+|++|++ ++|++||+|||+++|||+||+|||+||||+++| ++|+ .||++||||++
T Consensus 82 Efr~~~----------~~~~G~~l~v-~~F~~G~~VDV~g~tKGKGFqGvmKR~gf~g~p-~sHG~s~~hR~~GSiG~~~ 149 (210)
T PRK00001 82 EFRVVE----------EYEVGQEITV-DIFEAGQKVDVTGTSKGKGFAGVIKRHNFSGGP-ASHGNSRSHRRPGSIGARQ 149 (210)
T ss_pred EEccCC----------CCCCCCEEee-hhccCCCEEEEEEEEcCCcceeceEecccCCCC-CcCCcCcCCcCCcccCCCC
Confidence 999321 2368999999 899999999999999999999999999999999 7876 79999999998
Q ss_pred CCcceEEeEeecCcCCCeeeeEEeceEEEeee
Q psy16472 398 HPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429 (630)
Q Consensus 398 ~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~ 429 (630)
+|+||+++.+||||||++.+|+.|++|++++.
T Consensus 150 ~PgrV~kgkkmaG~mG~~~~T~~nl~V~~i~~ 181 (210)
T PRK00001 150 TPGRVFKGKKMAGHMGNERVTVQNLEVVKVDA 181 (210)
T ss_pred CCCeECCCcccCCCCCCeEEEEeCCEEEEEcC
Confidence 59999999999999999999999999999985
No 18
>KOG3141|consensus
Probab=99.92 E-value=7.2e-26 Score=230.03 Aligned_cols=165 Identities=24% Similarity=0.317 Sum_probs=142.7
Q ss_pred cCCchhhHHHHH--HHhhcCccccceeec-cceeeEEeeeecccccchhh---------------hhhhhhhcccCCceE
Q psy16472 259 NGGSVADKIAWA--RQHLEQPIPVGQVFA-QDEMIDCIGVTKGKGFKGEM---------------IAMKLLKKRQKKAHL 320 (630)
Q Consensus 259 ngG~i~~Kv~wa--~~~lEkqvPV~~Vf~-qde~idvigvtKgkGy~g~m---------------~g~kllg~~~KK~~i 320 (630)
-.|.|+-|++|+ ++..++++|+|.|+- .+.+|+++....-.||-+++ .|++.-..--+|+||
T Consensus 62 R~GvI~~K~GMmp~w~k~G~ri~~TiL~v~d~~Vi~~~t~E~~~g~~avqVG~g~~~p~kltk~~~g~f~~~gv~pK~~l 141 (310)
T KOG3141|consen 62 RVGVIARKLGMMPLWDKDGERIPVTILQVDDNHVIKYITPEAKGGYFAVQVGYGTVKPKKLTKAELGHFRSAGVPPKRHL 141 (310)
T ss_pred cceeEEEeccCchhhccCCCEEEEEEEEEecceEEEEechhhcCCeEEEEeccccCChHHhhHHHHHHHHHcCCChhhhh
Confidence 468999999998 555569999999998 67888888888557888774 355553334578999
Q ss_pred EEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC---CcccccccCCC
Q psy16472 321 MEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAW 397 (630)
Q Consensus 321 ~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~ 397 (630)
.||+|.. + |+...|+-+.+ ++|.+||+|||+|+|+|+|||||||||||+++| .+|+ .||..||+|+.
T Consensus 142 ~eF~Vt~-~-------al~~pGt~l~~-~hFk~GqyVDV~g~TigkGFqGvmKR~GFkG~p-asHG~sksHR~~GS~G~~ 211 (310)
T KOG3141|consen 142 REFRVTE-E-------ALLPPGTPLFA-RHFKPGQYVDVTGKTIGKGFQGVMKRHGFKGGP-ASHGTSKSHRRPGSIGQG 211 (310)
T ss_pred heEeech-h-------ccCCCCcccch-hhcCCCceEEEEeeEeccccccceeeccccCCc-cccCccccccCCccccCC
Confidence 9999983 2 67788999999 999999999999999999999999999999999 8887 79999999877
Q ss_pred -CCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeec
Q psy16472 398 -HPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT 433 (630)
Q Consensus 398 -~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdv 433 (630)
.|+||+++.+|+|+||++.+|+.|++|++|+....|
T Consensus 212 ~~pgRV~pGrKMpGhMG~~~rtik~LkV~kId~~~nv 248 (310)
T KOG3141|consen 212 TTPGRVWPGRKMPGHMGNEWRTIKGLKVWKIDTELNV 248 (310)
T ss_pred CCCcccccCCcCCcccCcceEEEeeeEEEEEcCCceE
Confidence 799999999999999999999999999999975443
No 19
>KOG0746|consensus
Probab=99.92 E-value=1.5e-25 Score=230.12 Aligned_cols=153 Identities=24% Similarity=0.266 Sum_probs=149.2
Q ss_pred CCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEee
Q psy16472 22 MGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREA 97 (630)
Q Consensus 22 ~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~ 97 (630)
|||||+|||+||| +|+||+||.|+|+| +|||| |+++|+.|+.+..+|.|....+|+
T Consensus 1 l~F~P~kRs~r~rgkvkafPkDD~skpvhlT~FlgY-----------------KAGMThivRe~drpgsK~~kkEv~--- 60 (384)
T KOG0746|consen 1 LGFLPRKRSSRHRGKVKAFPKDDPSKPVHLTAFLGY-----------------KAGMTHIVREVDRPGSKVNKKEVV--- 60 (384)
T ss_pred CCCCccchhhhhccccccCCCCCCCCceeEeeeecc-----------------cccceeeehhhcCcccccchhhhe---
Confidence 7999999999999 99999999999999 99999 999999999999999999999999
Q ss_pred cCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhh
Q psy16472 98 DRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQD 176 (630)
Q Consensus 98 ~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~ 176 (630)
|+|+.++++++..+.||||+.++.+++.|.+ |+++.+|+|.++||++|||+.++++++...+|..+.+.
T Consensus 61 ----------eAVTi~etPpmvVvgvvgyv~Tp~Glr~l~tv~A~hlSde~~Rrfyknw~kskkkaft~~~k~~~~~~gk 130 (384)
T KOG0746|consen 61 ----------EAVTIVETPPMVVVGIVGYVETPRGLRTLKTVWAEHLSDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGK 130 (384)
T ss_pred ----------eeEEEeccCCEEEEEEeeeeecCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhcc
Confidence 9999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhccceEEEEEEeecc
Q psy16472 177 KLGKKTIAQDLRKMAKYCKVIRVIAHTQN 205 (630)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~ir~i~~tq~ 205 (630)
+.+.++++. ++++|..+.+|.+++++.-
T Consensus 131 ~~~~~~~~~-~kky~~virv~ahtq~~~~ 158 (384)
T KOG0746|consen 131 KQLEKDFSS-MKKYCQVIRVIAHTQMRLL 158 (384)
T ss_pred hhhHHHHHH-HHhhhheeeeeeechhhhh
Confidence 999999988 9999999999999999883
No 20
>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.1e-18 Score=170.20 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=91.4
Q ss_pred hhcCCceecccccc-cCCcEEEEEEEeec------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCcc
Q psy16472 338 RQHLEQPIPVGQVF-AQDEMIDCIGVTKG------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPSR 401 (630)
Q Consensus 338 ~~lLGKkIgmtqVF-~~Ge~VDVTgVTKG------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~R 401 (630)
.+++|+|++||+|| +.|+.||||+|... +||.++|..++..+ .+...+ ||+.++. ..|.+
T Consensus 2 ~G~~G~KvGMT~vf~~~g~~vPVTVie~~p~~V~~vkt~e~dGy~a~qv~~~~~k-~~~~~k~~~g~~~k~~---~~~k~ 77 (218)
T COG0087 2 LGFLGYKVGMTHVFDERGISVPVTVIEVPPNVVVQVKTYETDGYRAVQVGAGDRK-AKRVNKPLVGHFAKAG---VKPKR 77 (218)
T ss_pred cccceEeccceEEEccCCcEEEEEEEEcCCcEEEEEEecccCCcEEEEEeeccee-eehhccceeeeecccC---CCCCC
Confidence 36899999999999 48999999999998 99999999999876 445566 8998854 47999
Q ss_pred eEEeEeecCcCC---CeeeeEEeceEEEeeeeeec-----CCCceeeeecc
Q psy16472 402 VQFTVARAGQKG---YHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRW 444 (630)
Q Consensus 402 VlkEvRmaGQmG---y~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~ 444 (630)
.++|++..+... |+.++++..++|++||+||| ||||||+||||
T Consensus 78 ~l~E~rv~~~~~~~~~e~g~ei~~dvF~~g~~VDV~gvTKGKGF~G~~KR~ 128 (218)
T COG0087 78 HLAEFRVGGGDVAEKFEVGQEITVDVFKEGELVDVTGVTKGKGFQGVMKRW 128 (218)
T ss_pred eEEEEEecCccccceechhhhhchhhccCCCEEEEEEEecccccceeeeec
Confidence 999999876543 99999999999999999999 99999999998
No 21
>KOG1405|consensus
Probab=52.93 E-value=33 Score=38.44 Aligned_cols=80 Identities=29% Similarity=0.369 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhh-ccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceE----e
Q psy16472 180 KKTIAQDLRKMA-KYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHL----M 254 (630)
Q Consensus 180 ~~~~~~~~~~~~-~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~----m 254 (630)
..+.|+.|.++. +.|.|..+|+ .||||. --|.|.|....+.|..--||-.+ =
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIv-------------------EPIQsE----GGDnhaSp~Ff~kLrdi~~Kh~v~fivD 311 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIV-------------------EPIQSE----GGDNHASPDFFRKLRDITKKHGVAFIVD 311 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEe-------------------echhcc----CCCccCCHHHHHHHHHHHHhcCeEEEee
Confidence 345566666665 3455555554 367764 45778888888877665566553 4
Q ss_pred EEEecCCchhhHHHHHHHhhcCccccceee
Q psy16472 255 EIQLNGGSVADKIAWARQHLEQPIPVGQVF 284 (630)
Q Consensus 255 e~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf 284 (630)
|+|.-||.-++. ||+|||+-+-|.+.|.
T Consensus 312 EVQTGgGaTGk~--WaHehw~l~~PpD~vT 339 (484)
T KOG1405|consen 312 EVQTGGGATGKF--WAHEHWNLDSPPDVVT 339 (484)
T ss_pred eeecCCCccCce--eeehhcCCCCCcccee
Confidence 999999998876 9999999999988763
Done!