Query psy16472
Match_columns 630
No_of_seqs 375 out of 2123
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 22:13:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_C 60S ribosomal protein L 100.0 5E-129 2E-133 1013.3 22.5 377 38-587 1-378 (389)
2 3u5e_B 60S ribosomal protein L 100.0 2E-128 8E-133 1007.5 26.7 374 38-587 1-374 (387)
3 4a17_B RPL3, ribosomal protein 100.0 4E-127 1E-131 999.4 26.2 372 38-587 1-372 (391)
4 2zkr_b 60S ribosomal protein L 100.0 3E-120 1E-124 953.4 13.3 390 38-594 1-392 (403)
5 3j21_C 50S ribosomal protein L 100.0 2E-112 8E-117 882.2 22.7 352 42-578 3-365 (365)
6 1vq8_B 50S ribosomal protein L 100.0 1.7E-94 5.8E-99 748.2 25.6 331 41-579 2-338 (338)
7 2ftc_C L3MT, MRP-L3, mitochond 100.0 8.4E-52 2.9E-56 405.5 15.8 183 339-555 3-210 (211)
8 3r8s_D 50S ribosomal protein L 100.0 1.3E-51 4.4E-56 403.3 11.0 182 338-553 2-207 (209)
9 3v2d_E 50S ribosomal protein L 100.0 6.7E-51 2.3E-55 397.6 11.0 179 338-554 2-203 (206)
10 3iz5_C 60S ribosomal protein L 100.0 1.1E-49 3.7E-54 416.6 5.0 235 9-312 1-242 (389)
11 2zjr_B 50S ribosomal protein L 100.0 3.8E-49 1.3E-53 387.2 7.8 180 339-556 3-205 (211)
12 3bbo_F Ribosomal protein L3; l 100.0 9.1E-49 3.1E-53 393.9 4.4 185 338-556 44-253 (259)
13 3u5e_B 60S ribosomal protein L 100.0 1.6E-48 5.5E-53 407.5 5.2 231 9-311 1-238 (387)
14 4a17_B RPL3, ribosomal protein 100.0 5.1E-48 1.8E-52 404.2 5.9 230 9-312 1-237 (391)
15 2zkr_b 60S ribosomal protein L 100.0 6.9E-42 2.4E-46 360.1 1.5 233 9-311 1-240 (403)
16 3j21_C 50S ribosomal protein L 100.0 1.8E-39 6.2E-44 337.5 8.0 212 13-311 3-242 (365)
17 2zjr_B 50S ribosomal protein L 100.0 1E-37 3.6E-42 306.3 8.6 100 316-429 74-177 (211)
18 3bbo_F Ribosomal protein L3; l 100.0 1.6E-38 5.3E-43 319.8 -0.8 106 315-429 117-225 (259)
19 2ftc_C L3MT, MRP-L3, mitochond 100.0 1.3E-33 4.5E-38 277.0 9.6 160 260-429 2-183 (211)
20 3r8s_D 50S ribosomal protein L 100.0 5E-33 1.7E-37 272.3 4.5 159 260-429 2-182 (209)
21 1vq8_B 50S ribosomal protein L 100.0 1.8E-32 6E-37 284.8 7.9 181 338-553 40-302 (338)
22 3v2d_E 50S ribosomal protein L 100.0 1.3E-32 4.5E-37 268.8 3.7 155 260-429 2-177 (206)
No 1
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=100.00 E-value=4.9e-129 Score=1013.30 Aligned_cols=377 Identities=62% Similarity=1.075 Sum_probs=357.4
Q ss_pred cccCCCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeee
Q psy16472 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILE 117 (630)
Q Consensus 38 ~~~rk~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e 117 (630)
|||||||+||||||||+|||||++++++|++||+||+++|+||+||+|||||||||++++|||+|+++++|+++||||||
T Consensus 1 MshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivE 80 (389)
T 3iz5_C 1 MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIE 80 (389)
T ss_dssp CCSCSSCCCCSSCSTTCCCCCCSSSSCCCSCCCCSCSSCTTCBSEEEEEEEEEEEEEECCCCCSSSSCSSCEEEEEEEEE
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCcEeeeeeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEE
Q psy16472 118 TPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVI 197 (630)
Q Consensus 118 ~pp~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 197 (630)
||||+|||+++|.+||+||++|+|||||||++||+|+|||||++|+++|||+|+++|++++++++++++|+.|.++|.+|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~g~~~~~~~~~~~~k~~~vi 160 (389)
T 3iz5_C 81 TPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIV 160 (389)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEEECSCCSSHHHHTTTTTTCSCCCSSCSCCCCCCSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcchhhhhhhhhhhhccccccchhhhHHHHHHHHhhhcccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCc
Q psy16472 198 RVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277 (630)
Q Consensus 198 r~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkq 277 (630)
|+|+|||| ++++
T Consensus 161 Rvi~hTqp------------------------------------~l~~-------------------------------- 172 (389)
T 3iz5_C 161 RVIAHTQI------------------------------------RKMK-------------------------------- 172 (389)
T ss_dssp EEEEEECG------------------------------------GGCS--------------------------------
T ss_pred EEEEeccc------------------------------------cccc--------------------------------
Confidence 99999995 5552
Q ss_pred cccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEE
Q psy16472 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 357 (630)
Q Consensus 278 vPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~V 357 (630)
+++|||||||||||||++|++|+|||+++||++|++++||++||+|
T Consensus 173 ----------------------------------~l~qKK~~imEiqVnGgsv~~k~d~a~~~lg~~i~v~~vF~~ge~V 218 (389)
T 3iz5_C 173 ----------------------------------GLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMV 218 (389)
T ss_dssp ----------------------------------SSCCCCCEEEEEEBCCSCHHHHHHHHHHHHTSCBCGGGTCCTTCEE
T ss_pred ----------------------------------CCccCCceEEEEEecCCCHHHHHHHHHhcCCCEEehhhccCCCCEE
Confidence 3567777777777777777788888889999999999999999999
Q ss_pred EEEEEeeccceeeeEEeeccCCCCCcCcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeee-eeecCCC
Q psy16472 358 DCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA-GIHTKDG 436 (630)
Q Consensus 358 DVTgVTKGKGYqGVqkRwG~kk~p~KthkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~-~vdvgkG 436 (630)
||+|+|||+||+||++|||++++|+++|++||++||||+|+|+||+++++|+|||||+++|++|++|+++|+ ..
T Consensus 219 DV~gvTKGKGfqGvvKRwg~~~~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~kI~kI~~~g~----- 293 (389)
T 3iz5_C 219 DIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQ----- 293 (389)
T ss_dssp EEEEECCEEEEECHHHHHCCCCCCSSCCSCSSCCSCSSCSSSSSCCTTSCCCEEEECCEEEEEEEECCEEEESSS-----
T ss_pred EEEEEecCcccccceeecccCCCCccccCCCCCCcccCCCCCCcccCCCccCCCCCCcceeeeeeEEEEeCCccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 21
Q ss_pred ceeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEE
Q psy16472 437 KVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI 516 (630)
Q Consensus 437 f~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I 516 (630)
..||++|||||+.++|
T Consensus 294 ----------------------------------------------------------------~~~~a~t~~d~t~k~I 309 (389)
T 3iz5_C 294 ----------------------------------------------------------------ESHEACTEFDRTEKDI 309 (389)
T ss_dssp ----------------------------------------------------------------SCCCSCSSSSCCCCCS
T ss_pred ----------------------------------------------------------------cccccccccccccccc
Confidence 1288999999999999
Q ss_pred ecCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEccccccccccccCC
Q psy16472 517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587 (630)
Q Consensus 517 ~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~GhgrfqLek 587 (630)
||||||+|||+|+|||||||||||||++++|+||++++++ +++.++++|+|+||||+|||||||||+.+
T Consensus 310 tP~GGF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~s~~~~--~~~~~~e~~~lkfIdtsSK~Ghgrfqt~~ 378 (389)
T 3iz5_C 310 TPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQ--TSRLALEEIKLKFIDTSSKFGHGRFQTTD 378 (389)
T ss_dssp SCTTCBTTTBCCCSEEEEEESCCSSSSSCEEEEEECSCCS--CCSSCCSCCCEEEECCCCCTTSCSTTHHH
T ss_pred cCCCCccccceecCCEEEEeccccCCCCcEEEEeecccCC--CcccccccCceeEEeccccccCcccCCHH
Confidence 9999999999999999999999999999999999999988 77889999999999999999999999854
No 2
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=100.00 E-value=2.5e-128 Score=1007.55 Aligned_cols=374 Identities=59% Similarity=1.021 Sum_probs=353.5
Q ss_pred cccCCCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeee
Q psy16472 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILE 117 (630)
Q Consensus 38 ~~~rk~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e 117 (630)
|||||||+||||||||+|||||++++++|++||+||+++|+||+||+|||||||||++++|||+|+++++|+++||||||
T Consensus 1 mshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEvv~~VTivE 80 (387)
T 3u5e_B 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVD 80 (387)
T ss_dssp -CCCSSCCCCSSCGGGCCCCCCSCSSCCCCCCCCCCTTSCCCCSEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCccCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEE
Q psy16472 118 TPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVI 197 (630)
Q Consensus 118 ~pp~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 197 (630)
||||+|||+++|.+||+||++|+|||||||++||+|+||||||+|+++|||+|+++|++++ ++++++|+.|.++|.+|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~--~~~~~~~~~~~k~~~vi 158 (387)
T 3u5e_B 81 TPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDG--AGIERELARIKKYASVV 158 (387)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCTTTSCCCTTTTTGGGGSSSS--HHHHHHHHHHHHSCSEE
T ss_pred cCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcccchhhhhhhhhhcccccchh--HHHHHHHHHhhhcccEE
Confidence 9999999999999999999999999999999999999999999999999999999998655 67888999999999999
Q ss_pred EEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCc
Q psy16472 198 RVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277 (630)
Q Consensus 198 r~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkq 277 (630)
|+|+|||| ++++
T Consensus 159 Rvi~hTqp------------------------------------~l~~-------------------------------- 170 (387)
T 3u5e_B 159 RVLVHTQI------------------------------------RKTP-------------------------------- 170 (387)
T ss_dssp EEEEECCG------------------------------------GGSS--------------------------------
T ss_pred EEEEeccc------------------------------------cccC--------------------------------
Confidence 99999995 4444
Q ss_pred cccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEE
Q psy16472 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 357 (630)
Q Consensus 278 vPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~V 357 (630)
++|||||||||||||++|++|+|||+++||++|+++++|++||+|
T Consensus 171 -----------------------------------l~qKK~~imEiqV~Ggsv~~k~~~a~~~lg~~i~v~~vF~~ge~V 215 (387)
T 3u5e_B 171 -----------------------------------LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMI 215 (387)
T ss_dssp -----------------------------------CSCCSCCEEEEECCSSCHHHHHHHHHHTTTCEECGGGTCCTTCEE
T ss_pred -----------------------------------ccccCceeEEEEecCCCHHHHHHHHHhccCCEechHHhccCCCEE
Confidence 667777777777777788888888999999999999999999999
Q ss_pred EEEEEeeccceeeeEEeeccCCCCCcCcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCc
Q psy16472 358 DCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGK 437 (630)
Q Consensus 358 DVTgVTKGKGYqGVqkRwG~kk~p~KthkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf 437 (630)
||+|+|||+||+||++|||++++|+++|++||++||||+|+|+||+++++|||||||+++|++|++|+++|+..+
T Consensus 216 DV~gvTKGKGfqGvvKRwg~~~~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~~~----- 290 (387)
T 3u5e_B 216 DAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDD----- 290 (387)
T ss_dssp EEEEECCCCCEECHHHHHCCCCCCTTCTTCSSSCSCCCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEECCSSC-----
T ss_pred EEEEEEcCccceeeeeecccCCCCccccCCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCCcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995221
Q ss_pred eeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEe
Q psy16472 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517 (630)
Q Consensus 438 ~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~ 517 (630)
.||++|||||+.++||
T Consensus 291 ----------------------------------------------------------------~~~~~t~~d~t~k~It 306 (387)
T 3u5e_B 291 ----------------------------------------------------------------EANGATSFDRTKKTIT 306 (387)
T ss_dssp ----------------------------------------------------------------SCSSCCTTTCCCCCSC
T ss_pred ----------------------------------------------------------------cccccccccccccccc
Confidence 2789999999999999
Q ss_pred cCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEccccccccccccCC
Q psy16472 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587 (630)
Q Consensus 518 p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~GhgrfqLek 587 (630)
|||||+|||+|+|||||||||||||++++|+||++++++ +++.++++|+|+||||+|||||||||+.+
T Consensus 307 P~GGF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~s~~~~--~~~~~~e~~~lkfIdtsSK~Ghgrfqt~~ 374 (387)
T 3u5e_B 307 PMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTN--TSRKALEEVSLKWIDTASKFGKGRFQTPA 374 (387)
T ss_dssp CTTCBTTTBCCCSCEEEEESCCSSCTTCEEEEEECSSCC--CCBTTBCCCCEEEECCSCTTTTCCCSSHH
T ss_pred CCCCccccceecCCEEEEEecccCCCCcEEEEeecccCC--cccccccCCcceEEEcccccCCCcCCCHH
Confidence 999999999999999999999999999999999999888 67789999999999999999999999854
No 3
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=100.00 E-value=4e-127 Score=999.40 Aligned_cols=372 Identities=58% Similarity=0.998 Sum_probs=350.2
Q ss_pred cccCCCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeee
Q psy16472 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILE 117 (630)
Q Consensus 38 ~~~rk~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e 117 (630)
|||||||+||||||||+|||||++++++|++||+||+++|+||+||+|||||||||++++|||+|+++++|+++||||||
T Consensus 1 mshRKf~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivE 80 (391)
T 4a17_B 1 MSHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREVDRSGSRHNKKEVVEAVTVIE 80 (391)
T ss_dssp -CCCSSCCCCSSCGGGCSCCCCSCSSCCCSSCCCCCSSSSCEECEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceEeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEE
Q psy16472 118 TPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVI 197 (630)
Q Consensus 118 ~pp~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 197 (630)
||||+|||+++|.+||+||++|+|||||||++||+|+|||||++|+++||++|+++|++ ++++++|+.|.++|.+|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~----~~~~~~~~~~~k~~~vi 156 (391)
T 4a17_B 81 CPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKNWANSNKKAFTHHEKNFDQ----KAQDLLLKRIEKYCSVV 156 (391)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCSTTSCCCTTHHHHHTCCH----HHHHHHHHHHHHHCSEE
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhcccccccchhhhhhhhhhcch----hHHHHHHHHhhhcccEE
Confidence 99999999999999999999999999999999999999999999999999999999986 56778888888999999
Q ss_pred EEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCc
Q psy16472 198 RVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277 (630)
Q Consensus 198 r~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkq 277 (630)
|+|+|||| ++++
T Consensus 157 Rvi~hTqp------------------------------------~l~~-------------------------------- 168 (391)
T 4a17_B 157 RVIAHTNM------------------------------------SKLN-------------------------------- 168 (391)
T ss_dssp EEEEEECG------------------------------------GGSC--------------------------------
T ss_pred EEEEeccc------------------------------------cccC--------------------------------
Confidence 99999995 4444
Q ss_pred cccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEE
Q psy16472 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 357 (630)
Q Consensus 278 vPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~V 357 (630)
++|||||||||||||++|++|+|||+++||++|+++++|++||+|
T Consensus 169 -----------------------------------l~qKK~~imEiqV~GGsv~~k~~~a~~~lg~~i~v~~vF~~ge~V 213 (391)
T 4a17_B 169 -----------------------------------LRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEML 213 (391)
T ss_dssp -----------------------------------SSCCCCEEEEEEEECSCHHHHHHHHHHHTTCEECHHHHCCTTCEE
T ss_pred -----------------------------------cCCCCceEEEEEecCCCHHHHHHHHHhhcCCEEehhHhcCCCCEE
Confidence 567777777777777777788888899999999999999999999
Q ss_pred EEEEEeeccceeeeEEeeccCCCCCcCcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCc
Q psy16472 358 DCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGK 437 (630)
Q Consensus 358 DVTgVTKGKGYqGVqkRwG~kk~p~KthkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf 437 (630)
||+|+|||+||+||++|||++++|+++|++||++||||+|+|+||+++++|+|||||+++|++|++|+++|+..
T Consensus 214 DV~gvTKGKGfqGvvKRwg~~~~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~~------ 287 (391)
T 4a17_B 214 DVLGVTKGKGFAGVIKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRVGKGD------ 287 (391)
T ss_dssp EEEEECCCCCEECHHHHHCCCCCCTTCSSCSSSCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEECTT------
T ss_pred EEEEEEeCcccceeeeecccCCCCcccccCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCCc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999522
Q ss_pred eeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEe
Q psy16472 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517 (630)
Q Consensus 438 ~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~ 517 (630)
..||++|||||+.++||
T Consensus 288 ---------------------------------------------------------------~~~~a~t~~d~t~k~It 304 (391)
T 4a17_B 288 ---------------------------------------------------------------DASNASTAGDVTDKAIT 304 (391)
T ss_dssp ---------------------------------------------------------------CSSTTCCTTTCSCCCSS
T ss_pred ---------------------------------------------------------------ccccccccccccccccc
Confidence 12789999999999999
Q ss_pred cCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEccccccccccccCC
Q psy16472 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587 (630)
Q Consensus 518 p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~GhgrfqLek 587 (630)
|||||+|||+|+|||||||||||||++++|+||++++++ +++.++++|+|+||||+|||||||||+.+
T Consensus 305 P~GGF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~s~~~~--~~~~~~e~~~lkfIdtsSK~Ghg~fqt~~ 372 (391)
T 4a17_B 305 PLGGFPHYGVVKNDFIMIKGCCVGPKKRVLTLRKSIIPQ--THGAAKEIINLKFIDTSSKIGHGRFQTVE 372 (391)
T ss_dssp CTTCBTTTBCCCSCEEEEESCCSSSTTCEEEEEECSSCC--CSHHHHCCCEEEEECCCCTTTTCCCSSHH
T ss_pred CCCcccccceecCCEEEEeccccCCCCcEEEEeecccCC--CchhccccCcceEEEccccccCcccCCHH
Confidence 999999999999999999999999999999999999988 77789999999999999999999999854
No 4
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.9e-120 Score=953.39 Aligned_cols=390 Identities=71% Similarity=1.175 Sum_probs=333.1
Q ss_pred cccCCCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeee
Q psy16472 38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILE 117 (630)
Q Consensus 38 ~~~rk~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e 117 (630)
|||||||+||||||||+|||||++++|+|++||+||+++|+||+||+|||||||||++++|||+|+++++|+++||||||
T Consensus 1 MshRKf~~PR~GSlgf~PRKRa~~~~~rvrswP~dd~~~~~~ltgflGyKaGMThi~~~~drpgS~~~~kev~~pVTVlE 80 (403)
T 2zkr_b 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVE 80 (403)
T ss_dssp ------CCCCSSCGGGCSCCCCSCSSCCCSCCCCSCSSCCBGGGSCEEEEEEEEEEEEECCCTTSTTCSCEEEEEEEEEE
T ss_pred CCccccCCCCccccccCcccccccCCCCcccCCCcCCCCCceeeEEEEEccCCeEEEeeccCCCCccCCCceEEEEEEEE
Confidence 89999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEE
Q psy16472 118 TPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVI 197 (630)
Q Consensus 118 ~pp~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 197 (630)
||||+|||++||.++|+||++++|+||++++++|+|+|||||+++++|+|+++.++|.++++.++++++|+.+.++|.+|
T Consensus 81 tpP~~VvgvrGY~~~~~Gl~~~~~vwa~~ls~e~~Rr~~kn~~~~~kk~~~~~~kk~~~~~~~~~i~~~l~~~~k~~~~i 160 (403)
T 2zkr_b 81 TPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVI 160 (403)
T ss_dssp CCCBEEEEEEEEEEETTEEEEEEEEECSCCCGGGGCCCCCCSSCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHSCCCSSC
T ss_pred cCCCEEEEEEeEEEecCCcccceEEeeccCChHHhhhhhcccccchhhhhhhcccccccchhhhhHHHHHHHhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCc
Q psy16472 198 RVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 277 (630)
Q Consensus 198 r~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkq 277 (630)
|+|+|||| +++
T Consensus 161 Rvi~hTq~------------------------------------~~~--------------------------------- 171 (403)
T 2zkr_b 161 RVIAHTQM------------------------------------RLL--------------------------------- 171 (403)
T ss_dssp EEEEECCG------------------------------------GGS---------------------------------
T ss_pred EEEEEecc------------------------------------ccc---------------------------------
Confidence 99999996 333
Q ss_pred cccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEE
Q psy16472 278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 357 (630)
Q Consensus 278 vPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~V 357 (630)
+++||++||+||||+|+++++|++||++.||++|+++++|++||+|
T Consensus 172 ----------------------------------~l~qkk~~l~E~~v~g~~~~~k~~~A~~~lg~~i~v~~vF~~ge~V 217 (403)
T 2zkr_b 172 ----------------------------------PLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMI 217 (403)
T ss_dssp ----------------------------------SCSCCCCCCEEEEBCSSSHHHHHHHHHHHHHSCBCSTTTCCSSCCC
T ss_pred ----------------------------------ccccCCCEEEEEEecCcchhhhhhhhhccCCcEEchhhhccCCceE
Confidence 3678999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccceeeeEEeeccCCCCCcCcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCc
Q psy16472 358 DCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGK 437 (630)
Q Consensus 358 DVTgVTKGKGYqGVqkRwG~kk~p~KthkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf 437 (630)
||+|+|||+||+|||+|||++++|+++|++||++||||+|+|+||+++++|||||||+.+|++|++|+++|...|+.+|.
T Consensus 218 DV~gvTKGKGfqGvvkRwg~~~~p~ktH~~hR~~GsiG~~~P~RV~~g~~maGqmG~~~rT~~NlkI~rI~~~~~~~~~k 297 (403)
T 2zkr_b 218 DVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGK 297 (403)
T ss_dssp CEEEECCEEEEECHHHHHCCCCCCSSTTTTTTCCSCSSCSSSCSCCTTSCCCEEEECCEEEESCCCEEEEECCCCCCSSC
T ss_pred EEEEeecCCcceeceeecCcCCCCcccccccCCCcccCCCCCCeECCCCcCCCCCCcceEEecCCEEEEECCcccccccc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999887776664
Q ss_pred eeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEe
Q psy16472 438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT 517 (630)
Q Consensus 438 ~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~ 517 (630)
. |+|+++|+|||+.++||
T Consensus 298 ~--------------------------------------------------------------~~~~~~t~~d~~~k~It 315 (403)
T 2zkr_b 298 L--------------------------------------------------------------IKNNASTDYDLSDKSIN 315 (403)
T ss_dssp C--------------------------------------------------------------CCCTTCCCCCCSSCSCC
T ss_pred c--------------------------------------------------------------ccccccccccccccccc
Confidence 3 67999999999999999
Q ss_pred cCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEccccccccccccC--CCCCcccc
Q psy16472 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE--QPIPVGQV 594 (630)
Q Consensus 518 p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~GhgrfqLe--k~l~v~~v 594 (630)
|||||+|||+|+|||||||||||||++++|+||++++++ +++.++++|+|+||||+|||||||||+. |...+.-+
T Consensus 316 P~GGF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~a~~~~--~~~~~~e~~~l~~i~t~SK~Ghgrfqt~~ek~~~~g~~ 392 (403)
T 2zkr_b 316 PLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQ--TKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPL 392 (403)
T ss_dssp SCCCBTTTBCCCSCEEEEESCCSSCTTCEEECCCCC-------------------------------------------
T ss_pred CCCCcceeeeecCCEEEEEecccCCCCcEEEEeeccccC--cccccccCCceEEEecccccCCCccccHHHHHhhcCcc
Confidence 999999999999999999999999999999999999887 6778899999999999999999999985 44444333
No 5
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-112 Score=882.18 Aligned_cols=352 Identities=38% Similarity=0.593 Sum_probs=319.0
Q ss_pred CCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcE
Q psy16472 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPM 121 (630)
Q Consensus 42 k~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~ 121 (630)
+||+||||||||+|||||++++++|+|||+|| |+||+||+|||||||||++++|||+| +++||+++||||||||||
T Consensus 3 ~~~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd---~~~L~~F~GYKAGMTHiv~~~drpgS-~~~kEv~~~VTivEtPPm 78 (365)
T 3j21_C 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKET---EVRMLGFAGYKAGMTHILMIDDEPGL-TNGKEIFMPVTIIETPPL 78 (365)
T ss_dssp SCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC---SSEECCEEEEEEEEEEEEEESCSCSS-CSSSEEEEEEEEEECCCE
T ss_pred CCCCCCCCCCccCccccccccCCCccccCCCC---CceeeeeeeeccCCeEEEEEcCCCCC-cCCCEeeeeeEEEeCCCe
Confidence 78999999999999999999999999999999 77999999999999999999999999 999999999999999999
Q ss_pred EEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhH---------HHHhHHhhhhhhhhhhhHHHHHHHHHhhc
Q psy16472 122 VIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR---------QKAFTKASKKWQDKLGKKTIAQDLRKMAK 192 (630)
Q Consensus 122 ~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~---------~ka~~~~~k~~~~~~~~~~~~~~~~~~~~ 192 (630)
+|+|+++|.+||+||++++||||+||+++|+|+|| +|-+++ +..|++|+++| +++.+++++++|+.|.+
T Consensus 79 ~vvgi~gY~~tp~Gl~~~~~vwa~~l~~~~~~~~y-~~~~~k~~~~~~~e~~Rr~~~~~k~~-~~~~~~~~~~~~~~~~k 156 (365)
T 3j21_C 79 RVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKE-RKGKPKPKMTFYKLLERRIATLPKNY-TQEMFEQKLGQLEDMIK 156 (365)
T ss_dssp EEEEEEEEEECSSSEEEEEEECCCCCCCCSCCCCC-SSSCCCCCCCSCSHHHHSSCCCCSCH-HHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEeecCCCceeEEEEccccccchhhcccc-ccccccccccchhhhhhhhhcccccc-cccchhhHHHHHHHhhc
Confidence 99999999999999999999999999999988887 543333 22344567777 45566788999999999
Q ss_pred --cceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHH
Q psy16472 193 --YCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWA 270 (630)
Q Consensus 193 --~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa 270 (630)
+|.+||+|+|||| ++++
T Consensus 157 ~~~~~~iRvi~hTqp------------------------------------~~~~------------------------- 175 (365)
T 3j21_C 157 EGEIVDVRAIVATQP------------------------------------WVIK------------------------- 175 (365)
T ss_dssp CTTEEEEEEEEEECC------------------------------------SSCS-------------------------
T ss_pred cCcceEEEEEEeccc------------------------------------cccc-------------------------
Confidence 9999999999996 3333
Q ss_pred HHhhcCccccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceeccccc
Q psy16472 271 RQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQV 350 (630)
Q Consensus 271 ~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqV 350 (630)
+ |||||||||||||+++++|+|||++.||++|+++++
T Consensus 176 ------------------------------------------l-qKK~~imEiqV~Ggsv~~k~~~a~~~lG~~i~v~~v 212 (365)
T 3j21_C 176 ------------------------------------------L-KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEV 212 (365)
T ss_dssp ------------------------------------------S-CCSCCEEEEEEECSSHHHHHHHHHHHTTCBCCHHHH
T ss_pred ------------------------------------------c-ccCccEEEEEecCCCHHHHHHHHHhhcCcEEechhc
Confidence 5 667777777777777777888888999999999999
Q ss_pred ccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeee
Q psy16472 351 FAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAG 430 (630)
Q Consensus 351 F~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~KthkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~ 430 (630)
|++||+|||+|+|||+||+||++||||+++|++++.+||++||||+|+|+||+++++|||||||+.+|++|++|+++|+.
T Consensus 213 F~~ge~VDV~GvTKGKGFqGvvKRwgf~~~p~~hg~~hR~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~ 292 (365)
T 3j21_C 213 LKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGEN 292 (365)
T ss_dssp CCTTCEEEEEEECCCCEEECHHHHHCCCCCSSCCSSCSSCCCCSCCSSSCSCCSSSCCCEEESSCEEEEEEEEEEEEEEE
T ss_pred cCCCCEEEEEEEeeccccccceeeccCCCCCCCCCCCCCCCcccCCCCCCcccCCCccCCccCcceeEecCCEEEEEcCC
Confidence 99999999999999999999999999999996666689999999999999999999999999999999999999999952
Q ss_pred eecCCCceeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccc
Q psy16472 431 IHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYD 510 (630)
Q Consensus 431 vdvgkGf~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~ 510 (630)
...++||
T Consensus 293 -------------------------------------------------------------------------~~~~~~d 299 (365)
T 3j21_C 293 -------------------------------------------------------------------------GKLKLDE 299 (365)
T ss_dssp -------------------------------------------------------------------------SSCCSSS
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 1236799
Q ss_pred cceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEccccc
Q psy16472 511 LTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKI 578 (630)
Q Consensus 511 L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~ 578 (630)
|+.++|||||||+|||+|+|||||||||||||++++|+||++++++ .+++++++|+|+||||+|||
T Consensus 300 ~t~k~ItP~GGF~hYG~V~~~~ilvKGsVPG~kk~~v~lr~a~~~~--~~~~~~~~~~l~~Idt~SKq 365 (365)
T 3j21_C 300 NTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPP--KKKPPVQRPQITYVSVESKQ 365 (365)
T ss_dssp SSCSCCCCTTCBTTBCCCCEEEEEEESCCSSCTTCEEEEEECSSCC--SSSCCCSSCEEEEECCSCCC
T ss_pred ccccccccCCCceeeeeecCCEEEEEecCcCCCCcEEEEeeccccc--cchhhccCCceEEEECCcCC
Confidence 9999999999999999999999999999999999999999999887 56778899999999999997
No 6
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=100.00 E-value=1.7e-94 Score=748.17 Aligned_cols=331 Identities=34% Similarity=0.563 Sum_probs=299.3
Q ss_pred CCCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCc
Q psy16472 41 RKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPP 120 (630)
Q Consensus 41 rk~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp 120 (630)
++||+||||||||+|||||++++++|++||+|| +|++++||+|||+|||||+++++||+|+++++|+++||||||+||
T Consensus 2 ~k~~~PR~Gsl~f~PrkRa~~~~~rv~s~P~~~--~~~~l~g~lG~K~GMT~i~~~~g~~~s~~~gke~~vpVTVie~~p 79 (338)
T 1vq8_B 2 PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDD--GQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPP 79 (338)
T ss_dssp CCCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC--SSCEECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCC
T ss_pred CCCCCCCCCcCccCccccccccCCCcccCCCCC--CCceEEEEEEEecCCEEEEeECCccCCccCCceeEEEEEEEEeCC
Confidence 789999999999999999999999999999999 567999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhc--cceEEE
Q psy16472 121 MVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAK--YCKVIR 198 (630)
Q Consensus 121 ~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~ir 198 (630)
|+|+++++|.+++++|+..+++||+++++++.|+++|++. +++ + ..+..++.+.+ +|.+||
T Consensus 80 ~~V~~vk~~~~dgy~lq~~~~v~a~~~~~~~~r~~~kp~~------~~~-------~----~~~~~~~~~~~~~~~~~ir 142 (338)
T 1vq8_B 80 MRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPED------HDP-------D----AAEEQIRDAHEAGDLGDLR 142 (338)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCSS------CCH-------H----HHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEEEeeeccCceeEeeeeEeccccchhhccccccccc------ccc-------h----hhHHHHHhhhcccceeEEE
Confidence 9999999999999999999999999999999999998862 110 0 12233443433 899999
Q ss_pred EEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCcc
Q psy16472 199 VIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278 (630)
Q Consensus 199 ~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqv 278 (630)
+|+|||| ++|.
T Consensus 143 ~i~~tqp------------------------------------~k~a--------------------------------- 153 (338)
T 1vq8_B 143 LITHTVP------------------------------------DAVP--------------------------------- 153 (338)
T ss_dssp EEEECCG------------------------------------GGCT---------------------------------
T ss_pred EEEEecc------------------------------------cccc---------------------------------
Confidence 9999996 3333
Q ss_pred ccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcC--CceecccccccCCcE
Q psy16472 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL--EQPIPVGQVFAQDEM 356 (630)
Q Consensus 279 PV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lL--GKkIgmtqVF~~Ge~ 356 (630)
++++|++||+||||+++++++|+|||.++| |++|+++++|++||+
T Consensus 154 ---------------------------------gv~~kk~~l~E~rv~~~~~~~k~~~a~~~l~~G~~i~v~~vF~~Gq~ 200 (338)
T 1vq8_B 154 ---------------------------------SVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEY 200 (338)
T ss_dssp ---------------------------------TSCCCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTTTCCTTCE
T ss_pred ---------------------------------CCCccCCEEEEEEecCcchhhhhhhhhhccCCCcEEchhhcccCCCc
Confidence 466789999999999999999999999999 999999999999999
Q ss_pred EEEEEEeeccceeeeEEeeccCCCCCc--CcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecC
Q psy16472 357 IDCIGVTKGKGFKGVTSRWHTKKLPRK--THKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTK 434 (630)
Q Consensus 357 VDVTgVTKGKGYqGVqkRwG~kk~p~K--thkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvg 434 (630)
|||+|+||||||||||+||||+++|++ +|++||++||||+|+|+||+++++|||||||+.+|++|++|+++|.
T Consensus 201 VDV~gvTKGKGFqGv~KRwgf~~~p~sHG~sk~hR~~GsiG~~~P~RV~~g~kmaGqmG~~~rT~~Nl~I~kId~----- 275 (338)
T 1vq8_B 201 ADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGE----- 275 (338)
T ss_dssp EEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEE-----
T ss_pred eeeEEEEeCCCceeeeeecCCCCCCcccCCCccCCCCcccCCCCCCeeccCCcCCCCcCCceEEEeccEEEEcCC-----
Confidence 999999999999999999999999944 3457999999999999999999999999999999999999999983
Q ss_pred CCceeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceE
Q psy16472 435 DGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEK 514 (630)
Q Consensus 435 kGf~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~ 514 (630)
..
T Consensus 276 ------------------------------------------------------------------------------e~ 277 (338)
T 1vq8_B 276 ------------------------------------------------------------------------------GD 277 (338)
T ss_dssp ------------------------------------------------------------------------------ES
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred EEecCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEcccccc
Q psy16472 515 SITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIA 579 (630)
Q Consensus 515 ~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~G 579 (630)
+|||||||+|||+|+|||||||||||||++++|+||++++++ + .++++|+|+||||+||||
T Consensus 278 ~i~p~GGf~~YG~v~~~~ilvKGsVPG~k~~~V~ir~avk~~---~-~~~~~~~~~~i~t~sk~G 338 (338)
T 1vq8_B 278 EPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPN---D-QPRLDPEVRYVSNESNQG 338 (338)
T ss_dssp SSCCTTCBTTTBCCCEEEEEEESCCSSCTTCEEEEEECSSCS---S-CCCCSCCEEEECCCCSCC
T ss_pred ccccCCCccccccccCCEEEEEccCcCCCCcEEEEeehhccc---c-ccccCCcceEEecccccC
Confidence 699999999999999999999999999999999999999766 2 377999999999999997
No 7
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=8.4e-52 Score=405.47 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=171.3
Q ss_pred hcCCceecccccc-cCCcEEEEEEEeec--------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCc
Q psy16472 339 QHLEQPIPVGQVF-AQDEMIDCIGVTKG--------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPS 400 (630)
Q Consensus 339 ~lLGKkIgmtqVF-~~Ge~VDVTgVTKG--------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~ 400 (630)
++||+||+||++| ++|+.||||++..+ |||.|||.+++..+ +++.++ ||++++.+ .|.
T Consensus 3 Gllg~KiGMt~if~~~G~~ipvTVl~~~~~~V~q~kt~e~~~dGY~Avqvg~~~~~-~~~~~kp~~Ghf~kagv---~pk 78 (211)
T 2ftc_C 3 GLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVS-RFRKATSILEFYRELGL---PPK 78 (211)
T ss_pred eEEEEEcceEEEECCCCcEEEEEEEEEcCCEEEEEEccccCCCCEEEEEEeeeecc-cccCChhHhhhHHHcCC---Ccc
Confidence 5899999999999 58999999999988 69999999999877 656666 99999874 799
Q ss_pred ceEEeEeecCcCCCeeeeEEeceEEEeeeeeec-----CCCceeeeeccccCCCCCCCC-C-CCCCCCccCCCCCCCccc
Q psy16472 401 RVQFTVARAGQKGYHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTH-K-GLRKVACIGAWHPSRVQF 473 (630)
Q Consensus 401 RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg-~-~hR~~GsiG~~~P~rV~~ 473 (630)
|.++||+..+...|++++++++++|++||+||| ||||||+||||||+++|+||| + .||++||||+|+|+||||
T Consensus 79 r~l~Efrv~~~~~~~~G~~l~v~~F~~Gq~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GSiG~~~PgRV~k 158 (211)
T 2ftc_C 79 QTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDIGRVWP 158 (211)
T ss_pred cEEEEEEeCCCCccccCCEEEhHhccCCceEEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCCCCCCeecC
Confidence 999999987777799999999999999999999 999999999999999999999 4 599999999999999999
Q ss_pred CCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEech
Q psy16472 474 TVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMK 553 (630)
Q Consensus 474 g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~i 553 (630)
|++|||||||+++|++ | |+|++||+ |+|+||||||||||++++|+||+++
T Consensus 159 gkkmaG~mG~~~~T~~-------------N-------l~I~~id~----------e~nlilvKGsVPG~k~~~v~ir~a~ 208 (211)
T 2ftc_C 159 GTKMPGKMGNIYRTEY-------------G-------LKVWRINT----------KHNIIYVNGSVPGHKNCLVKVKDSK 208 (211)
T ss_pred CcccCCCCCCeeEEEe-------------c-------cEEEEECC----------CCCEEEEEecCcCCCCCEEEEEecc
Confidence 9999999999999999 6 77799999 9999999999999999999999998
Q ss_pred hh
Q psy16472 554 LL 555 (630)
Q Consensus 554 l~ 555 (630)
+|
T Consensus 209 ~~ 210 (211)
T 2ftc_C 209 LP 210 (211)
T ss_pred cC
Confidence 65
No 8
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=100.00 E-value=1.3e-51 Score=403.35 Aligned_cols=182 Identities=15% Similarity=0.233 Sum_probs=171.1
Q ss_pred hhcCCceecccccc-cCCcEEEEEEEeec------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCcc
Q psy16472 338 RQHLEQPIPVGQVF-AQDEMIDCIGVTKG------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPSR 401 (630)
Q Consensus 338 ~~lLGKkIgmtqVF-~~Ge~VDVTgVTKG------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~R 401 (630)
.++||+||+||++| ++|+.||||++..+ |||.|+|.+||.++ +++.++ ||++++++ .|.|
T Consensus 2 ~Glig~KiGMt~if~~~G~~ipvTVl~~~~~~V~q~kt~e~dGY~Avqvg~g~~~-~~~~~Kp~~Ghf~kagv---~pkr 77 (209)
T 3r8s_D 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKK-ANRVTKPEAGHFAKAGV---EAGR 77 (209)
T ss_dssp CCEEEEEEEEEEEECTTCCEEEEEEEECCCEEEEEEECHHHHSSCEEEEEESCCC-GGGSCHHHHHHHHHHTC---CCCS
T ss_pred cEEEEEEeceeEEECCCCcEEEEEEEEecCCEEEEEEccCCCCeEEEEEEEeecC-cccCCHHHhhHHHHcCC---CCCe
Confidence 36899999999999 58999999999999 99999999999877 667777 99999874 7999
Q ss_pred eEEeEeecCcCCCeeeeEEeceEEEeeeeeec-----CCCceeeeeccccCCCCCCCCC--CCCCCCccCC-CCCCCccc
Q psy16472 402 VQFTVARAGQKGYHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTHK--GLRKVACIGA-WHPSRVQF 473 (630)
Q Consensus 402 VlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg~--~hR~~GsiG~-~~P~rV~~ 473 (630)
.++||+......|++|+++++++|++||+||| ||||||+||||||+++|+|||+ .||++||||+ |+|+||||
T Consensus 78 ~l~Efrv~~~~~~~~G~~i~v~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG~~~~P~rV~k 157 (209)
T 3r8s_D 78 GLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFK 157 (209)
T ss_dssp EEEEEECCTTCCCCTTCEECGGGGGSCCEEEEEEECCCCCEECHHHHHCCCCCCSSTTCCSCSSSCCCCCCBTTBCSCCT
T ss_pred EEEEEecCCcccCCCCCEEEeeeEcCCCEEEEEEEEeccccceeeeEcCCCCCCcccCCCCCCCCCeeCCCCCCCCcCcC
Confidence 99999987767899999999999999999999 9999999999999999999995 5999999999 78999999
Q ss_pred CCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEech
Q psy16472 474 TVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMK 553 (630)
Q Consensus 474 g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~i 553 (630)
|++|||||||+++|++ | |+|++||+ ++||||||||||||++++|+||+++
T Consensus 158 gkkmaG~mG~~~~T~~-------------N-------l~I~kid~----------e~nlilvKGsVPG~k~~~v~ir~av 207 (209)
T 3r8s_D 158 GKKMAGQMGNERVTVQ-------------S-------LDVVRVDA----------ERNLLLVKGAVPGATGSDLIVKPAV 207 (209)
T ss_dssp TCCCSEECSSSEEEEE-------------E-------EEEEEEEG----------GGTEEEEESCCSSCTTCEEEEEECS
T ss_pred CCccCCCCCCccEEEe-------------c-------CEEEEEcC----------CCCEEEEEecCcCCCCCEEEEEecc
Confidence 9999999999999999 6 67789998 9999999999999999999999987
No 9
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=100.00 E-value=6.7e-51 Score=397.56 Aligned_cols=179 Identities=21% Similarity=0.381 Sum_probs=167.0
Q ss_pred hhcCCceecccccccCCcEEEEEEEeec------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCcce
Q psy16472 338 RQHLEQPIPVGQVFAQDEMIDCIGVTKG------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPSRV 402 (630)
Q Consensus 338 ~~lLGKkIgmtqVF~~Ge~VDVTgVTKG------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~RV 402 (630)
.++||++|+||++|++|+.||||++..+ |||.|||.+|+..+ +++.++ ||++++++ .|.|.
T Consensus 2 ~Gllg~KiGMt~if~~G~~ipvTVi~~~~~~V~q~kt~e~dGY~Avqvg~~~~~-~~~~~kp~~Ghf~kagv---~pkr~ 77 (206)
T 3v2d_E 2 KGILGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQN-PKRVNRPLKGHFAKAGV---EPVRI 77 (206)
T ss_dssp CEEEEEEEEEEEEESSSCEEEEEEEECCCEEEEEEECHHHHSSCEEEEEEEECC-GGGCCHHHHHHHHTTCC---CCEEE
T ss_pred ceEEEEEccceeEEcCCCEEEEEEEEecCCEEEEEEccCcCCeEEEEEEeccCC-ccCCCHHHhhhHHHcCC---CcCeE
Confidence 4689999999999966999999999999 99999999999877 667777 99999884 79999
Q ss_pred EEeEeecCcCCCeeeeEEeceEEEeeeeeec-----CCCceeeeeccccCCCCCCCC-C-CCCCCCccCC-CCCCCcccC
Q psy16472 403 QFTVARAGQKGYHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTH-K-GLRKVACIGA-WHPSRVQFT 474 (630)
Q Consensus 403 lkEvRmaGQmGy~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg-~-~hR~~GsiG~-~~P~rV~~g 474 (630)
++||+... ++++++++++|++||+||| ||||||+||||||+++|+||| + .||++||||+ |+|+|||+|
T Consensus 78 l~Efrv~~----~~G~~i~v~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p~tHG~s~~hR~~GsiG~~~~P~rV~kg 153 (206)
T 3v2d_E 78 LREIRDFN----PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKG 153 (206)
T ss_dssp EEEEETCC----CSSSEECGGGCCTTCEEEEEEECCCCCEECHHHHSCCCCCCSSTTCCSCTTCCCCCCCBTTBCSCCTT
T ss_pred EEEEECCC----CCCCEEEeeeecCCCEEEEEEEEeccccceeeeEcccCCCCcccCCCCCCCCCeeCCCCCCCCcCcCC
Confidence 99999754 7899999999999999999 999999999999999999999 4 5999999999 789999999
Q ss_pred CCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEechh
Q psy16472 475 VARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKL 554 (630)
Q Consensus 475 ~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il 554 (630)
++|||||||+++|++ | |+|++||+ ++||||||||||||++++|+||+++.
T Consensus 154 kkmaG~mG~~~~T~~-------------N-------l~I~kid~----------e~nlilvKGsVPG~k~~~v~ir~a~k 203 (206)
T 3v2d_E 154 KKMAGHYGAERVTVM-------------N-------LEVVDVIP----------EENLLLVKGAVPGPNGGLVIVRETKK 203 (206)
T ss_dssp CCCCEECSSSEEEEE-------------E-------EEEEEEET----------TTTEEEEESCCSSCTTCEEEEEECCC
T ss_pred CccCCCCCCccEEEe-------------c-------cEEEEEcC----------CCCEEEEEecCcCCCCCEEEEeeccc
Confidence 999999999999999 6 67789998 99999999999999999999999984
No 10
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=100.00 E-value=1.1e-49 Score=416.56 Aligned_cols=235 Identities=34% Similarity=0.474 Sum_probs=220.8
Q ss_pred ccccccCCCCCCCCCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeee
Q psy16472 9 SSHRKFSAPRHGSMGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFI 84 (630)
Q Consensus 9 ~~~~~f~~p~h~~~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~ 84 (630)
||||||||||||||||||+|||+||+ +|+||.|+.++|.| ||||| |+.||+.+++...+
T Consensus 1 MshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GY-----------------KAGMTHiv~~~drp 63 (389)
T 3iz5_C 1 MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGY-----------------KAGMTHIVREVEKP 63 (389)
T ss_dssp CCSCSSCCCCSSCSTTCCCCCCSSSSCCCSCCCCSCSSCTTCBSEEEEE-----------------EEEEEEEEECCCCC
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceeeeeeee-----------------ccCCeEEEEEccCC
Confidence 89999999999999999999999999 99999999999999 99999 99999999999999
Q ss_pred eeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhccccChHHHhhhhhhhhhhH
Q psy16472 85 GYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHLSQECRRRFYKNWYKSR 163 (630)
Q Consensus 85 GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~~~~~~r~~~k~~~k~~ 163 (630)
|++..-.+|+ |.|+.|+++++-.+.|+||+.++.+++.|.+ |+++++++|.++|+++||++.++++
T Consensus 64 gS~~~~kEv~-------------~~VTivEtPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaf 130 (389)
T 3iz5_C 64 GSKLHKKETC-------------EAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAF 130 (389)
T ss_dssp SSSSCSSCEE-------------EEEEEEECCCEEEEEEEEEECCTTCCEEEEEEECSCCSSHHHHTTTTTTCSCCCSSC
T ss_pred CCCcCCcEee-------------eeeEEEeCCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcchhhhhhhhh
Confidence 9999999999 9999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHH
Q psy16472 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243 (630)
Q Consensus 164 ~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (630)
+|+.++|..+.+.++.++++++ +.++|..+++|.+++..... -
T Consensus 131 tk~~kk~~~~~g~~~~~~~~~~-~~k~~~viRvi~hTqp~l~~------------------------------------~ 173 (389)
T 3iz5_C 131 TKYALKYDSDAGKKEIQLQLEK-MKKYATIVRVIAHTQIRKMK------------------------------------G 173 (389)
T ss_dssp SCCCCCCSHHHHHHHHHHHHHH-HHHHTCEEEEEEEECGGGCS------------------------------------S
T ss_pred hhhccccccchhhhHHHHHHHH-hhhcccEEEEEEeccccccc------------------------------------C
Confidence 9999999877777778888888 66999999999999987541 1
Q ss_pred hhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhh--hhhhhhh
Q psy16472 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLK 312 (630)
Q Consensus 244 l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m--~g~kllg 312 (630)
|+ ||||||||||||||+|++|+|||.++||++|+|++||.++|+|||||+||||||+|+| ||++.+.
T Consensus 174 l~--qKK~~imEiqVnGgsv~~k~d~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~p 242 (389)
T 3iz5_C 174 LK--QKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLP 242 (389)
T ss_dssp SC--CCCCEEEEEEBCCSCHHHHHHHHHHHHTSCBCGGGTCCTTCEEEEEEECCEEEEECHHHHHCCCCCC
T ss_pred Cc--cCCceEEEEEecCCCHHHHHHHHHhcCCCEEehhhccCCCCEEEEEEEecCcccccceeecccCCCC
Confidence 67 7999999999999999999999999999999999999999999999999999999998 7776553
No 11
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=100.00 E-value=3.8e-49 Score=387.24 Aligned_cols=180 Identities=25% Similarity=0.346 Sum_probs=166.2
Q ss_pred hcCCceecccccccCCcEEEEEEEeec------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCcceE
Q psy16472 339 QHLEQPIPVGQVFAQDEMIDCIGVTKG------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPSRVQ 403 (630)
Q Consensus 339 ~lLGKkIgmtqVF~~Ge~VDVTgVTKG------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~RVl 403 (630)
++||.|++||++|.+|..+|||+|+.+ |||.++|.+|+..+ +++.++ ||++++++ .|.+.+
T Consensus 3 g~lg~K~GMT~i~~~g~~~pVTVie~~p~~V~~~kt~~~dgy~avqvg~~~~~-~~~~tkp~~g~~~kagv---~~k~~l 78 (211)
T 2zjr_B 3 GILGTKIGMTQIWKNDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKA-ERKVNKPMQGHFAKAGV---APTRIL 78 (211)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEECCCEEEEEEECTTTTSSCEEEEECSCCC-GGGCCHHHHHHHHTTTC---CCCSCE
T ss_pred eEeEEecCcEeEEeCCCEEEEEEEEeCCcEEEEEeceecCCCcEEEEEEEEec-ccccChhhhhhHHHcCC---CCCcEE
Confidence 579999999999977999999999999 89999999999865 556666 89988764 589999
Q ss_pred EeEeecCcCCCeeeeEEeceEEEeeeeeec-----CCCceeeeeccccCCCCCCCC-C-CCCCCCccCC-CCCCCcccCC
Q psy16472 404 FTVARAGQKGYHHRTELNKKIYRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTH-K-GLRKVACIGA-WHPSRVQFTV 475 (630)
Q Consensus 404 kEvRmaGQmGy~~GTEiNvdIFKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg-~-~hR~~GsiG~-~~P~rV~~g~ 475 (630)
.|++..+ ++++++++++|++||+||| |||||||||||||+++|+||| + .||++||||+ |+|+|||||+
T Consensus 79 ~Efrv~~----~~G~~i~v~~F~~G~~VDV~g~tKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG~~~~PgRV~kgk 154 (211)
T 2zjr_B 79 REFRGFA----PDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGK 154 (211)
T ss_dssp EEETTCC----CSSEECSTTTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCCSSTTCSCCTTC
T ss_pred EEEEcCC----cCCCEeEhhhhcCCCceEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCCCCCCCcCcCCC
Confidence 9999765 7899999999999999999 999999999999999999999 4 5999999996 6899999999
Q ss_pred CCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEechhh
Q psy16472 476 ARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555 (630)
Q Consensus 476 km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~ 555 (630)
+|||||||+++|++ | |+|++||+ |+||||||||||||++++|+||+++++
T Consensus 155 kmaG~mG~~~~T~~-------------N-------l~I~~id~----------e~nlilvKGsVPG~~~~~v~ir~a~k~ 204 (211)
T 2zjr_B 155 RMAGHMGMERVTVQ-------------N-------LEVVEIRA----------GENLILVKGAIPGANGGLVVLRSAAKA 204 (211)
T ss_dssp CCCEEEECCEEEEE-------------E-------EEEEEEET----------TTTEEEEESCCSSCTTCEEEEEBCSSC
T ss_pred ccCCCCCCccEeEe-------------c-------cEEEEEcC----------CCCEEEEEecCcCCCCcEEEEEecccc
Confidence 99999999999999 6 77789999 999999999999999999999999876
Q ss_pred h
Q psy16472 556 K 556 (630)
Q Consensus 556 ~ 556 (630)
.
T Consensus 205 ~ 205 (211)
T 2zjr_B 205 S 205 (211)
T ss_dssp C
T ss_pred c
Confidence 5
No 12
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.1e-49 Score=393.91 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=131.5
Q ss_pred hhcCCceecccccc-cCCcEEEEEEEeec-------------cceeeeEEeeccCCCCCcCcC---CcccccccCCCCCc
Q psy16472 338 RQHLEQPIPVGQVF-AQDEMIDCIGVTKG-------------KGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPS 400 (630)
Q Consensus 338 ~~lLGKkIgmtqVF-~~Ge~VDVTgVTKG-------------KGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~ 400 (630)
.++||.|++||++| ++|..||||+|+.+ |||.++|..|+..+ +++.++ ||++++++ .|.
T Consensus 44 ~G~lG~K~GMT~if~e~G~~vPVTVle~~p~~Vv~q~kt~e~dGy~Avqvg~~~~k-~k~~tKp~~Ghf~kagv---~~k 119 (259)
T 3bbo_F 44 VGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVR-DRKLTKPEMGHLEKSGI---IPL 119 (259)
T ss_dssp -------------------------------------------------------C-CSSCCHHHHTTCSSCCC---CCS
T ss_pred eEEEEEecCcEEEEccCCeEEEEEEEEECCCEEEEEEeecCCCCcEEEEEEEeeec-hhhCChhhhhhHHHcCC---CCC
Confidence 46899999999999 58999999988887 89999999999876 556666 89998864 799
Q ss_pred ceEEeEeecCcCCCeeeeEEeceE-EEeeeeeec-----CCCceeeeeccccCCCCCCCCC-CCCCCCccCCC-CCCCcc
Q psy16472 401 RVQFTVARAGQKGYHHRTELNKKI-YRMGAGIHT-----KDGKVSVTSRWHTKKLPRKTHK-GLRKVACIGAW-HPSRVQ 472 (630)
Q Consensus 401 RVlkEvRmaGQmGy~~GTEiNvdI-FKIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg~-~hR~~GsiG~~-~P~rV~ 472 (630)
|.+.||+.....+|+.++++++++ |++||+||| |||||||||||||+++|+|||+ .||++||||+| +|+|||
T Consensus 120 r~l~Efrv~~~~~~~~G~~i~v~~vF~~Gq~VDV~G~TKGKGFqGv~KRwgf~g~p~sHGsk~hR~~GSiG~~~~PgRV~ 199 (259)
T 3bbo_F 120 RHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVY 199 (259)
T ss_dssp SCCCCCCSCCCCTTTTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCCSSSCSSTTTSCCCCSCSSCCTTTT
T ss_pred cEEEEEecCChhhcccccEeehhheecCCCEEEEEEEecCCcceeeeeecCcCCCCCcCCCCCCCCCcccCCCCCCCcCc
Confidence 999999986656699999999996 999999999 9999999999999999999996 59999999998 799999
Q ss_pred cCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccccCcCcEEEEEec
Q psy16472 473 FTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKM 552 (630)
Q Consensus 473 ~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~ 552 (630)
||++|||||||+++|++ | |+|++||+ |+|+||||||||||++++|+||++
T Consensus 200 kGkkMaGqmG~~~~T~~-------------N-------l~IvrId~----------e~nlilVKGsVPG~k~~~V~ir~a 249 (259)
T 3bbo_F 200 KGKKMPGRMGGTKRKIR-------------K-------LKIVKIDD----------QLNIIMIKGALPGKPGNLLRIAPA 249 (259)
T ss_dssp TTSCCCCCCCCCBCCCC-------------C-------CCEEEEET----------TTTEEEECSCCSSCSSSCCCCCCC
T ss_pred CCCccCCCCCCceEEEe-------------c-------cEEEEECC----------CCCEEEEEecCcCCCCCEEEEEec
Confidence 99999999999999988 6 67789999 999999999999999999999999
Q ss_pred hhhh
Q psy16472 553 KLLK 556 (630)
Q Consensus 553 il~~ 556 (630)
+++.
T Consensus 250 vk~~ 253 (259)
T 3bbo_F 250 KIVG 253 (259)
T ss_dssp CCC-
T ss_pred cccC
Confidence 8543
No 13
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=100.00 E-value=1.6e-48 Score=407.55 Aligned_cols=231 Identities=35% Similarity=0.505 Sum_probs=210.3
Q ss_pred ccccccCCCCCCCCCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeee
Q psy16472 9 SSHRKFSAPRHGSMGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFI 84 (630)
Q Consensus 9 ~~~~~f~~p~h~~~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~ 84 (630)
||||||||||||||||||+|||+||+ +|+||.|+.++|.| ||||| |+.||+.+++...+
T Consensus 1 mshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GY-----------------KAGMTHiv~~~drp 63 (387)
T 3u5e_B 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGY-----------------KAGMTTIVRDLDRP 63 (387)
T ss_dssp -CCCSSCCCCSSCGGGCCCCCCSCSSCCCCCCCCCCTTSCCCCSEEEEE-----------------EEEEEEEEEECCCT
T ss_pred CCcccCCCCCCCCCccCccccccccCCCcccCCCCCCCCCceeeeeeee-----------------ccCCeEEEEEccCC
Confidence 89999999999999999999999999 99999999999999 99999 99999999999999
Q ss_pred eeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhccccChHHHhhhhhhhhhhH
Q psy16472 85 GYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHLSQECRRRFYKNWYKSR 163 (630)
Q Consensus 85 GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~~~~~~r~~~k~~~k~~ 163 (630)
|++..-.+|+ |.|+.|+++++-.+.|+||+.++.+++.|.+ |+++++++|.++|+++||++.++++
T Consensus 64 gS~~~~kEvv-------------~~VTivEtPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaf 130 (387)
T 3u5e_B 64 GSKFHKREVV-------------EAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAF 130 (387)
T ss_dssp TSTTTTSEEE-------------EEEEEEECCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCTTTSCCCTT
T ss_pred CCCcCCCEee-------------eeeEEEecCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcccchhhhhhh
Confidence 9999999999 9999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHH
Q psy16472 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243 (630)
Q Consensus 164 ~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (630)
+|..++|.++....+ +++++ |.++|..+++|.+++..... +
T Consensus 131 tk~~kk~~~~~~~~~--~~~~~-~~k~~~viRvi~hTqp~l~~------------------------------------l 171 (387)
T 3u5e_B 131 TKYSAKYAQDGAGIE--RELAR-IKKYASVVRVLVHTQIRKTP------------------------------------L 171 (387)
T ss_dssp TTTGGGGSSSSHHHH--HHHHH-HHHSCSEEEEEEECCGGGSS------------------------------------C
T ss_pred hhhcccccchhHHHH--HHHHH-hhhcccEEEEEEeccccccC------------------------------------c
Confidence 999988863221111 23444 66999999999999887762 1
Q ss_pred hhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhh--hhhhhh
Q psy16472 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLL 311 (630)
Q Consensus 244 l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m--~g~kll 311 (630)
-. |||||||||||||+|++|+|||.++||++|+|++||.++|+|||||+||||||+|+| ||++.+
T Consensus 172 ~q---KK~~imEiqV~Ggsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~ 238 (387)
T 3u5e_B 172 AQ---KKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL 238 (387)
T ss_dssp SC---CSCCEEEEECCSSCHHHHHHHHHHTTTCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCCC
T ss_pred cc---cCceeEEEEecCCCHHHHHHHHHhccCCEechHHhccCCCEEEEEEEEcCccceeeeeecccCCC
Confidence 23 799999999999999999999999999999999999999999999999999999998 777654
No 14
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=100.00 E-value=5.1e-48 Score=404.16 Aligned_cols=230 Identities=31% Similarity=0.484 Sum_probs=209.1
Q ss_pred ccccccCCCCCCCCCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeee
Q psy16472 9 SSHRKFSAPRHGSMGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFI 84 (630)
Q Consensus 9 ~~~~~f~~p~h~~~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~ 84 (630)
||||||||||||||||||+|||+||+ +|+||.|+.++|.| ||||| |+.||+.+++...+
T Consensus 1 mshRKf~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GY-----------------KAGMTHiv~~~drp 63 (391)
T 4a17_B 1 MSHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGF-----------------KAGMTHILREVDRS 63 (391)
T ss_dssp -CCCSSCCCCSSCGGGCSCCCCSCSSCCCSSCCCCCSSSSCEECEEEEE-----------------EEEEEEEEEECCCT
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceEeeeeee-----------------ccCCeEEEEEccCC
Confidence 89999999999999999999999999 99999999999999 99999 99999999999999
Q ss_pred eeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhccccChHHHhhhhhhhhhhH
Q psy16472 85 GYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHLSQECRRRFYKNWYKSR 163 (630)
Q Consensus 85 GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~~~~~~r~~~k~~~k~~ 163 (630)
|++..-.+|+ |.|+.|+++++-.+.|+||+.++.+++.|.+ |+++++++|.++|+++||++.++++
T Consensus 64 gS~~~~kEv~-------------~~VTivEtPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaf 130 (391)
T 4a17_B 64 GSRHNKKEVV-------------EAVTVIECPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKNWANSNKKAF 130 (391)
T ss_dssp TSTTTTSEEE-------------EEEEEEECCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCSTTSCCCTT
T ss_pred CCCcCCCEee-------------eeeEEEeCCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhcccccccchhhh
Confidence 9999999999 9999999999999999999999999999998 9999999999999999998888888
Q ss_pred HHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHH
Q psy16472 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243 (630)
Q Consensus 164 ~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (630)
++.+++|.++..+ +++++ +.++|..+++|.+++..... +
T Consensus 131 tk~~kk~~~~~~~----~~~~~-~~k~~~viRvi~hTqp~l~~------------------------------------l 169 (391)
T 4a17_B 131 THHEKNFDQKAQD----LLLKR-IEKYCSVVRVIAHTNMSKLN------------------------------------L 169 (391)
T ss_dssp HHHHHTCCHHHHH----HHHHH-HHHHCSEEEEEEEECGGGSC------------------------------------S
T ss_pred hhhhhhcchhHHH----HHHHH-hhhcccEEEEEEeccccccC------------------------------------c
Confidence 8887777643333 23444 55899999999999887762 1
Q ss_pred hhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhh--hhhhhhh
Q psy16472 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLLK 312 (630)
Q Consensus 244 l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m--~g~kllg 312 (630)
-. |||||||||||||+|++|+|||+++||++|+|++||.++|+|||||+||||||+|+| ||++.+.
T Consensus 170 ~q---KK~~imEiqV~GGsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~p 237 (391)
T 4a17_B 170 RQ---KKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKHLQ 237 (391)
T ss_dssp SC---CCCEEEEEEEECSCHHHHHHHHHHHTTCEECHHHHCCTTCEEEEEEECCCCCEECHHHHHCCCCCC
T ss_pred CC---CCceEEEEEecCCCHHHHHHHHHhhcCCEEehhHhcCCCCEEEEEEEEeCcccceeeeecccCCCC
Confidence 23 799999999999999999999999999999999999999999999999999999998 7776543
No 15
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.9e-42 Score=360.09 Aligned_cols=233 Identities=39% Similarity=0.551 Sum_probs=208.0
Q ss_pred ccccccCCCCCCCCCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeee
Q psy16472 9 SSHRKFSAPRHGSMGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFI 84 (630)
Q Consensus 9 ~~~~~f~~p~h~~~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~ 84 (630)
||||||||||||||||+|+|||+||+ +|+||.|+.++|.| |+||| |..||+.+.....+
T Consensus 1 MshRKf~~PR~GSlgf~PRKRa~~~~~rvrswP~dd~~~~~~ltgflGy-----------------KaGMThi~~~~drp 63 (403)
T 2zkr_b 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGY-----------------KAGMTHIVREVDRP 63 (403)
T ss_dssp ------CCCCSSCGGGCSCCCCSCSSCCCSCCCCSCSSCCBGGGSCEEE-----------------EEEEEEEEEECCCT
T ss_pred CCccccCCCCccccccCcccccccCCCCcccCCCcCCCCCceeeEEEEE-----------------ccCCeEEEeeccCC
Confidence 89999999999999999999999999 99999999998888 99999 99999999999999
Q ss_pred eeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhccccChHHHhhhhhhhhhhH
Q psy16472 85 GYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHLSQECRRRFYKNWYKSR 163 (630)
Q Consensus 85 GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~~~~~~r~~~k~~~k~~ 163 (630)
|.+.....++ +.|+.++++++-.+.++||...+.+.+.+.+ |+++.+++|.++|+++||++-+++.
T Consensus 64 gS~~~~kev~-------------~pVTVlEtpP~~VvgvrGY~~~~~Gl~~~~~vwa~~ls~e~~Rr~~kn~~~~~kk~~ 130 (403)
T 2zkr_b 64 GSKVNKKEVV-------------EAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAF 130 (403)
T ss_dssp TSTTCSCEEE-------------EEEEEEECCCBEEEEEEEEEEETTEEEEEEEEECSCCCGGGGCCCCCCSSCCSCCCC
T ss_pred CCccCCCceE-------------EEEEEEEcCCCEEEEEEeEEEecCCcccceEEeeccCChHHhhhhhcccccchhhhh
Confidence 9999988998 9999999999999999999999999998887 9999999999999999998888888
Q ss_pred HHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHH
Q psy16472 164 QKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKL 243 (630)
Q Consensus 164 ~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (630)
.+.|.+|.+..+.++++++++. +.++|..+++|.+++..... +.
T Consensus 131 ~~~~kk~~~~~~~~~i~~~l~~-~~k~~~~iRvi~hTq~~~~~----------------------------------l~- 174 (403)
T 2zkr_b 131 TKYCKKWQDADGKKQLERDFSS-MKKYCQVIRVIAHTQMRLLP----------------------------------LR- 174 (403)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH-HSCCCSSCEEEEECCGGGSS----------------------------------CS-
T ss_pred hhcccccccchhhhhHHHHHHH-hhccceEEEEEEEecccccc----------------------------------cc-
Confidence 8888888877778888888877 66799999999998865531 01
Q ss_pred hhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhh--hhhhhh
Q psy16472 244 LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM--IAMKLL 311 (630)
Q Consensus 244 l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m--~g~kll 311 (630)
|||+||||+|+|+|++++|++||.+.||++|+|++||.++|+|||||+||||||+|+| ||++.+
T Consensus 175 ----qkk~~l~E~~v~g~~~~~k~~~A~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvkRwg~~~~ 240 (403)
T 2zkr_b 175 ----QKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240 (403)
T ss_dssp ----CCCCCCEEEEBCSSSHHHHHHHHHHHHHSCBCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCCC
T ss_pred ----cCCCEEEEEEecCcchhhhhhhhhccCCcEEchhhhccCCceEEEEEeecCCcceeceeecCcCCC
Confidence 5899999999999999999999999999999999999999999999999999999998 677653
No 16
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-39 Score=337.50 Aligned_cols=212 Identities=23% Similarity=0.274 Sum_probs=184.5
Q ss_pred ccCCCCCCCCCccccccccccc--ccccccCCCCCCCc--cCccccccccccccCCcccccccCCCCCCcEEeeeeeeec
Q psy16472 13 KFSAPRHGSMGFYPKKRSARHR--VKKASHRKFSAPRH--GSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKA 88 (630)
Q Consensus 13 ~f~~p~h~~~~~~p~k~~~rhr--~k~~~~rk~s~Prh--gslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKa 88 (630)
+|||||||||||||+|||+||+ +|+||.|+ |.| ||||| |+.||+.+++...+|+ .
T Consensus 3 ~~~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd---~~~L~~F~GY-----------------KAGMTHiv~~~drpgS-~ 61 (365)
T 3j21_C 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKET---EVRMLGFAGY-----------------KAGMTHILMIDDEPGL-T 61 (365)
T ss_dssp SCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC---SSEECCEEEE-----------------EEEEEEEEEESCSCSS-C
T ss_pred CCCCCCCCCCccCccccccccCCCccccCCCC---Cceeeeeeee-----------------ccCCeEEEEEcCCCCC-c
Confidence 7999999999999999999999 99999998 888 99999 9999999999999999 7
Q ss_pred cCeEEEEeecCCCCCCCCceEEEEEEeeecCcEEEEEEEEEeeCCCCcch-hhhhhcccc----------------ChHH
Q psy16472 89 GMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRS-FKTVWAEHL----------------SQEC 151 (630)
Q Consensus 89 gmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~~vvg~~~y~~~~~gl~~-~~~~~a~~~----------------~~~~ 151 (630)
.-.+|+ |.|+.|+++++-.+.|+||+.++.+++.|.+ |++++++.+ .+||
T Consensus 62 ~~kEv~-------------~~VTivEtPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~~~~~~~y~~~~~k~~~~~~~e~ 128 (365)
T 3j21_C 62 NGKEIF-------------MPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKMTFYKLL 128 (365)
T ss_dssp SSSEEE-------------EEEEEEECCCEEEEEEEEEEECSSSEEEEEEECCCCCCCCSCCCCCSSSCCCCCCCSCSHH
T ss_pred CCCEee-------------eeeEEEeCCCeEEEEEEEEeecCCCceeEEEEccccccchhhccccccccccccccchhhh
Confidence 777888 9999999999999999999999999999998 999999443 4788
Q ss_pred Hhhh---hhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHH--hhccceEEEEEEeecchhhccccccccCCCCcccccc
Q psy16472 152 RRRF---YKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRK--MAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSN 226 (630)
Q Consensus 152 ~r~~---~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~--~~~~~~~ir~i~~tq~~~~~~~~~~~~~~~~~~~~~~ 226 (630)
+|+| +|+|... . .++.++++++ +.+ +|..+++|.+++.....
T Consensus 129 ~Rr~~~~~k~~~~~---~---------~~~~~~~~~~-~~k~~~~~~iRvi~hTqp~~~~-------------------- 175 (365)
T 3j21_C 129 ERRIATLPKNYTQE---M---------FEQKLGQLED-MIKEGEIVDVRAIVATQPWVIK-------------------- 175 (365)
T ss_dssp HHSSCCCCSCHHHH---H---------HHHHHHHHHH-HHTCTTEEEEEEEEEECCSSCS--------------------
T ss_pred hhhhhccccccccc---c---------hhhHHHHHHH-hhccCcceEEEEEEeccccccc--------------------
Confidence 8877 4555211 1 1223345555 556 88999999999887772
Q ss_pred cCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccceeeccceeeEEeeeecccccchhh-
Q psy16472 227 VNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEM- 305 (630)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~~Vf~qde~idvigvtKgkGy~g~m- 305 (630)
+ -+ ||||||||||||+|++|++||.+.||++|+|++||.++|+|||+|+||||||+|+|
T Consensus 176 --------------l--qK----K~~imEiqV~Ggsv~~k~~~a~~~lG~~i~v~~vF~~ge~VDV~GvTKGKGFqGvvK 235 (365)
T 3j21_C 176 --------------L--KK----KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVK 235 (365)
T ss_dssp --------------S--CC----SCCEEEEEEECSSHHHHHHHHHHHTTCBCCHHHHCCTTCEEEEEEECCCCEEECHHH
T ss_pred --------------c--cc----CccEEEEEecCCCHHHHHHHHHhhcCcEEechhccCCCCEEEEEEEeecccccccee
Confidence 1 14 79999999999999999999999999999999999999999999999999999998
Q ss_pred -hhhhhh
Q psy16472 306 -IAMKLL 311 (630)
Q Consensus 306 -~g~kll 311 (630)
||++.+
T Consensus 236 Rwgf~~~ 242 (365)
T 3j21_C 236 RWGIKLR 242 (365)
T ss_dssp HHCCCCC
T ss_pred eccCCCC
Confidence 777644
No 17
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=100.00 E-value=1e-37 Score=306.31 Aligned_cols=100 Identities=31% Similarity=0.408 Sum_probs=94.1
Q ss_pred CCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC---Cccccc
Q psy16472 316 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK---GLRKVA 392 (630)
Q Consensus 316 KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk---GhRk~G 392 (630)
|++||+||++++ .||++|++ ++|++||+|||+++|||+||||||+||||+++| ++|+ +||++|
T Consensus 74 ~k~~l~Efrv~~------------~~G~~i~v-~~F~~G~~VDV~g~tKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~G 139 (211)
T 2zjr_B 74 PTRILREFRGFA------------PDGDSVNV-DIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGP-ASHGSKKWHRRPG 139 (211)
T ss_dssp CCSCEEEETTCC------------CSSEECST-TTSCTTCEEEEEEECCEEEEECHHHHHCCCCCC-SSSSCSSCSCSCC
T ss_pred CCcEEEEEEcCC------------cCCCEeEh-hhhcCCCceEEEEEEcCCcceeceeecCCCCCC-cccCCCCCCCCCc
Confidence 689999999976 59999999 999999999999999999999999999999999 5554 799999
Q ss_pred ccC-CCCCcceEEeEeecCcCCCeeeeEEeceEEEeee
Q psy16472 393 CIG-AWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429 (630)
Q Consensus 393 sIG-~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~ 429 (630)
||| +|+|+||+++++|||||||+.+|++|++|++++.
T Consensus 140 siG~~~~PgRV~kgkkmaG~mG~~~~T~~Nl~I~~id~ 177 (211)
T 2zjr_B 140 SIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEIRA 177 (211)
T ss_dssp CCCCSSTTCSCCTTCCCCEEEECCEEEEEEEEEEEEET
T ss_pred ccCCCCCCCcCcCCCccCCCCCCccEeEeccEEEEEcC
Confidence 999 4699999999999999999999999999999985
No 18
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.6e-38 Score=319.78 Aligned_cols=106 Identities=30% Similarity=0.448 Sum_probs=97.5
Q ss_pred cCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCc--CCccccc
Q psy16472 315 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTH--KGLRKVA 392 (630)
Q Consensus 315 ~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kth--kGhRk~G 392 (630)
++++||+||+++..+ +| .+|++|++++||++||+|||+|+|||||||||||||||+++| ++| ++||++|
T Consensus 117 ~~kr~l~Efrv~~~~-----~~---~~G~~i~v~~vF~~Gq~VDV~G~TKGKGFqGv~KRwgf~g~p-~sHGsk~hR~~G 187 (259)
T 3bbo_F 117 IPLRHLQEFRLQSID-----GF---EVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQ-MTHGSKSHRQLG 187 (259)
T ss_dssp CCSSCCCCCCSCCCC-----TT---TTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCC-SSSCSSTTTSCC
T ss_pred CCCcEEEEEecCChh-----hc---ccccEeehhheecCCCEEEEEEEecCCcceeeeeecCcCCCC-CcCCCCCCCCCc
Confidence 678999999997432 24 799999997789999999999999999999999999999999 555 4899999
Q ss_pred ccCCC-CCcceEEeEeecCcCCCeeeeEEeceEEEeee
Q psy16472 393 CIGAW-HPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429 (630)
Q Consensus 393 sIG~~-~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~ 429 (630)
|||+| +|+||+++++|||||||+.+|++|++|+++|.
T Consensus 188 SiG~~~~PgRV~kGkkMaGqmG~~~~T~~Nl~IvrId~ 225 (259)
T 3bbo_F 188 SIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDD 225 (259)
T ss_dssp CCSCSSCCTTTTTTSCCCCCCCCCBCCCCCCCEEEEET
T ss_pred ccCCCCCCCcCcCCCccCCCCCCceEEEeccEEEEECC
Confidence 99999 89999999999999999999999999999985
No 19
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.3e-33 Score=276.98 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=142.5
Q ss_pred CCchhhHHHHHHHhhc--Cccccceeec-cceeeEEeeeec-ccccchhhh---------------hhhhhhcccCCceE
Q psy16472 260 GGSVADKIAWARQHLE--QPIPVGQVFA-QDEMIDCIGVTK-GKGFKGEMI---------------AMKLLKKRQKKAHL 320 (630)
Q Consensus 260 gG~i~~Kv~wa~~~lE--kqvPV~~Vf~-qde~idvigvtK-gkGy~g~m~---------------g~kllg~~~KK~~i 320 (630)
.|.|+.|++|++-|.| ..+|||.|+. +..++.+....+ -+||.++++ |++....-.++++|
T Consensus 2 ~Gllg~KiGMt~if~~~G~~ipvTVl~~~~~~V~q~kt~e~~~dGY~Avqvg~~~~~~~~~~kp~~Ghf~kagv~pkr~l 81 (211)
T 2ftc_C 2 VGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTV 81 (211)
T ss_pred ceEEEEEcceEEEECCCCcEEEEEEEEEcCCEEEEEEccccCCCCEEEEEEeeeecccccCChhHhhhHHHcCCCcccEE
Confidence 3789999999999887 7999999999 888888877775 699999854 55554445689999
Q ss_pred EEEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC---CcccccccCCC
Q psy16472 321 MEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAW 397 (630)
Q Consensus 321 ~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~ 397 (630)
+||++++.+ ...+|++|++ ++|++||+|||+++||||||+||||||||+++| ++|+ .||++||||+|
T Consensus 82 ~Efrv~~~~--------~~~~G~~l~v-~~F~~Gq~VDV~g~sKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GSiG~~ 151 (211)
T 2ftc_C 82 KIFNITDNA--------AIKPGTPLYA-AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQP-ATHGQTKTHRRPGAVATG 151 (211)
T ss_pred EEEEeCCCC--------ccccCCEEEh-HhccCCceEEEEEEEcCCcceeceeecCCCCCC-cccCCCCCCCCCcccCCC
Confidence 999998753 2479999999 999999999999999999999999999999999 6655 79999999999
Q ss_pred CCcceEEeEeecCcCCCeeeeEEeceEEEeee
Q psy16472 398 HPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429 (630)
Q Consensus 398 ~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~ 429 (630)
+|+||+++.+|||||||+.+|++|++|++++.
T Consensus 152 ~PgRV~kgkkmaG~mG~~~~T~~Nl~I~~id~ 183 (211)
T 2ftc_C 152 DIGRVWPGTKMPGKMGNIYRTEYGLKVWRINT 183 (211)
T ss_pred CCCeecCCcccCCCCCCeeEEEeccEEEEECC
Confidence 99999999999999999999999999999986
No 20
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=99.97 E-value=5e-33 Score=272.33 Aligned_cols=159 Identities=26% Similarity=0.381 Sum_probs=141.2
Q ss_pred CCchhhHHHHHHHhhc--Cccccceeec-cceeeEEeeeecccccchhhh---------------hhhhhhcccCCceEE
Q psy16472 260 GGSVADKIAWARQHLE--QPIPVGQVFA-QDEMIDCIGVTKGKGFKGEMI---------------AMKLLKKRQKKAHLM 321 (630)
Q Consensus 260 gG~i~~Kv~wa~~~lE--kqvPV~~Vf~-qde~idvigvtKgkGy~g~m~---------------g~kllg~~~KK~~i~ 321 (630)
.|.|+.|++|++-|.| ..+|||.|+. +..++.+..+.+ +||.++++ |++....-.++++|.
T Consensus 2 ~Glig~KiGMt~if~~~G~~ipvTVl~~~~~~V~q~kt~e~-dGY~Avqvg~g~~~~~~~~Kp~~Ghf~kagv~pkr~l~ 80 (209)
T 3r8s_D 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLAN-DGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLW 80 (209)
T ss_dssp CCEEEEEEEEEEEECTTCCEEEEEEEECCCEEEEEEECHHH-HSSCEEEEEESCCCGGGSCHHHHHHHHHHTCCCCSEEE
T ss_pred cEEEEEEeceeEEECCCCcEEEEEEEEecCCEEEEEEccCC-CCeEEEEEEEeecCcccCCHHHhhHHHHcCCCCCeEEE
Confidence 4889999999999988 8999999999 677777666655 99998854 555555567899999
Q ss_pred EEEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC---CcccccccCC-C
Q psy16472 322 EIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK---GLRKVACIGA-W 397 (630)
Q Consensus 322 Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~-~ 397 (630)
||++.+.+ ...+|++|++ ++|++||+|||+++|||+||+|||+||||+++| ++|+ .||++||||+ |
T Consensus 81 Efrv~~~~--------~~~~G~~i~v-~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GsiG~~~ 150 (209)
T 3r8s_D 81 EFRLAEGE--------EFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQD-ATHGNSLSHRVPGSIGQNQ 150 (209)
T ss_dssp EEECCTTC--------CCCTTCEECG-GGGGSCCEEEEEEECCCCCEECHHHHHCCCCCC-SSTTCCSCSSSCCCCCCBT
T ss_pred EEecCCcc--------cCCCCCEEEe-eeEcCCCEEEEEEEEeccccceeeeEcCCCCCC-cccCCCCCCCCCeeCCCCC
Confidence 99996643 2479999999 999999999999999999999999999999999 8887 6999999998 7
Q ss_pred CCcceEEeEeecCcCCCeeeeEEeceEEEeee
Q psy16472 398 HPSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429 (630)
Q Consensus 398 ~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~ 429 (630)
+|+||+++++|||||||+.+|++|++|++++.
T Consensus 151 ~P~rV~kgkkmaG~mG~~~~T~~Nl~I~kid~ 182 (209)
T 3r8s_D 151 TPGKVFKGKKMAGQMGNERVTVQSLDVVRVDA 182 (209)
T ss_dssp TBCSCCTTCCCSEECSSSEEEEEEEEEEEEEG
T ss_pred CCCcCcCCCccCCCCCCccEEEecCEEEEEcC
Confidence 99999999999999999999999999999984
No 21
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=99.97 E-value=1.8e-32 Score=284.78 Aligned_cols=181 Identities=20% Similarity=0.269 Sum_probs=141.4
Q ss_pred hhcCCceecccccc-cCCc----------EEEEEEEeec------------cceeeeEEeeccC------CCCCcCcC--
Q psy16472 338 RQHLEQPIPVGQVF-AQDE----------MIDCIGVTKG------------KGFKGVTSRWHTK------KLPRKTHK-- 386 (630)
Q Consensus 338 ~~lLGKkIgmtqVF-~~Ge----------~VDVTgVTKG------------KGYqGVqkRwG~k------k~p~Kthk-- 386 (630)
.++||.|++||+|| ++|. .++||+|..+ +||. ++..++.- ..+++..+
T Consensus 40 ~g~lG~K~GMT~i~~~~g~~~s~~~gke~~vpVTVie~~p~~V~~vk~~~~dgy~-lq~~~~v~a~~~~~~~~r~~~kp~ 118 (338)
T 1vq8_B 40 QGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYG-QRPLTEVWTDEFHSELDRTLDVPE 118 (338)
T ss_dssp CCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCCEEEEEEEEEEEETTE-EEEEEEEECSCCCTTGGGTSCCCS
T ss_pred EEEEEEecCCEEEEeECCccCCccCCceeEEEEEEEEeCCcEEEEEEeeeccCce-eEeeeeEeccccchhhcccccccc
Confidence 35899999999999 4776 9999999988 7998 88876611 11122222
Q ss_pred --------Cccc--------------------c-cccCCCC-CcceEEeEeecCcC-----CCe---e--eeEEec-eEE
Q psy16472 387 --------GLRK--------------------V-ACIGAWH-PSRVQFTVARAGQK-----GYH---H--RTELNK-KIY 425 (630)
Q Consensus 387 --------GhRk--------------------~-GsIG~~~-P~RVlkEvRmaGQm-----Gy~---~--GTEiNv-dIF 425 (630)
+|++ + ++ .. +.+.+.|++..|.. .|. . ++++++ ++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~ir~i~~tqp~k~ag---v~~kk~~l~E~rv~~~~~~~k~~~a~~~l~~G~~i~v~~vF 195 (338)
T 1vq8_B 119 DHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPS---VPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIF 195 (338)
T ss_dssp SCCHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCTT---SCCCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTTTC
T ss_pred cccchhhHHHHHhhhcccceeEEEEEEEeccccccC---CCccCCEEEEEEecCcchhhhhhhhhhccCCCcEEchhhcc
Confidence 2332 2 23 34 48999999987643 343 5 999999 799
Q ss_pred Eeeeeeec-----CCCceeeeeccccCCCCCCCCC--CCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchh
Q psy16472 426 RMGAGIHT-----KDGKVSVTSRWHTKKLPRKTHK--GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLS 498 (630)
Q Consensus 426 KIG~~vdv-----gkGf~Gv~KR~~f~~~p~shg~--~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~ 498 (630)
++||+||| |||||||||||||+++|++||. .||++||||+|+|+|||+|++|||||||+++|++
T Consensus 196 ~~Gq~VDV~gvTKGKGFqGv~KRwgf~~~p~sHG~sk~hR~~GsiG~~~P~RV~~g~kmaGqmG~~~rT~~--------- 266 (338)
T 1vq8_B 196 RAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL--------- 266 (338)
T ss_dssp CTTCEEEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEE---------
T ss_pred cCCCceeeEEEEeCCCceeeeeecCCCCCCcccCCCccCCCCcccCCCCCCeeccCCcCCCCcCCceEEEe---------
Confidence 99999999 9999999999999999999994 5999999999999999999999999999999999
Q ss_pred hhhcCCCccccccceEEEecCCCCCcccccCCcEEEEecccc--c-CcCcEEEEEech
Q psy16472 499 MVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCM--G-PKKRVITLRKMK 553 (630)
Q Consensus 499 ~~~~n~~~t~~~L~~~~I~p~ggf~~yg~V~~n~i~vKGsVp--G-~k~~~v~ir~~i 553 (630)
| |+|++||+ +++ |-..|-.| | .++.+|.|+-++
T Consensus 267 ----N-------l~I~kId~----------e~~-i~p~GGf~~YG~v~~~~ilvKGsV 302 (338)
T 1vq8_B 267 ----N-------KRLIDIGE----------GDE-PTVDGGFVNYGEVDGPYTLVKGSV 302 (338)
T ss_dssp ----E-------EEEEEEEE----------ESS-SCCTTCBTTTBCCCEEEEEEESCC
T ss_pred ----c-------cEEEEcCC----------CCc-cccCCCccccccccCCEEEEEccC
Confidence 6 66789986 332 22233333 2 347889998876
No 22
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=99.97 E-value=1.3e-32 Score=268.85 Aligned_cols=155 Identities=24% Similarity=0.323 Sum_probs=138.1
Q ss_pred CCchhhHHHHHHHhhc-Cccccceeec-cceeeEEeeeecccccchhh---------------hhhhhhhcccCCceEEE
Q psy16472 260 GGSVADKIAWARQHLE-QPIPVGQVFA-QDEMIDCIGVTKGKGFKGEM---------------IAMKLLKKRQKKAHLME 322 (630)
Q Consensus 260 gG~i~~Kv~wa~~~lE-kqvPV~~Vf~-qde~idvigvtKgkGy~g~m---------------~g~kllg~~~KK~~i~E 322 (630)
-|.|+.|++|++-|.| ..+|||.|+. +..++.+....+ +||.+++ .|++....-.++++|.|
T Consensus 2 ~Gllg~KiGMt~if~~G~~ipvTVi~~~~~~V~q~kt~e~-dGY~Avqvg~~~~~~~~~~kp~~Ghf~kagv~pkr~l~E 80 (206)
T 3v2d_E 2 KGILGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEK-DGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILRE 80 (206)
T ss_dssp CEEEEEEEEEEEEESSSCEEEEEEEECCCEEEEEEECHHH-HSSCEEEEEEEECCGGGCCHHHHHHHHTTCCCCEEEEEE
T ss_pred ceEEEEEccceeEEcCCCEEEEEEEEecCCEEEEEEccCc-CCeEEEEEEeccCCccCCCHHHhhhHHHcCCCcCeEEEE
Confidence 4889999999988775 8899999999 677777666655 8999984 35666555568899999
Q ss_pred EEeCCCChhhhhHHhhhcCCceecccccccCCcEEEEEEEeeccceeeeEEeeccCCCCCcCcC---CcccccccCC-CC
Q psy16472 323 IQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHK---GLRKVACIGA-WH 398 (630)
Q Consensus 323 iqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~VDVTgVTKGKGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~-~~ 398 (630)
|++.+ .||++|++ ++|++||+|||+++|||+||+|||+||||+++| ++|+ .||++||||+ |+
T Consensus 81 frv~~------------~~G~~i~v-~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p-~tHG~s~~hR~~GsiG~~~~ 146 (206)
T 3v2d_E 81 IRDFN------------PEGDTVTV-EIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGP-DSHGAHKIHRHPGSIGNRKT 146 (206)
T ss_dssp EETCC------------CSSSEECG-GGCCTTCEEEEEEECCCCCEECHHHHSCCCCCC-SSTTCCSCTTCCCCCCCBTT
T ss_pred EECCC------------CCCCEEEe-eeecCCCEEEEEEEEeccccceeeeEcccCCCC-cccCCCCCCCCCeeCCCCCC
Confidence 99854 49999999 999999999999999999999999999999999 8887 7999999998 79
Q ss_pred CcceEEeEeecCcCCCeeeeEEeceEEEeee
Q psy16472 399 PSRVQFTVARAGQKGYHHRTELNKKIYRMGA 429 (630)
Q Consensus 399 P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~ 429 (630)
|+||+++++|||||||+.+|++|++|++++.
T Consensus 147 P~rV~kgkkmaG~mG~~~~T~~Nl~I~kid~ 177 (206)
T 3v2d_E 147 PGRVYKGKKMAGHYGAERVTVMNLEVVDVIP 177 (206)
T ss_dssp BCSCCTTCCCCEECSSSEEEEEEEEEEEEET
T ss_pred CCcCcCCCccCCCCCCccEEEeccEEEEEcC
Confidence 9999999999999999999999999999984
Done!