RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16472
(630 letters)
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_C
Length = 389
Score = 253 bits (648), Expect = 1e-78
Identities = 146/267 (54%), Positives = 186/267 (69%), Gaps = 35/267 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF PRHGS+GF P+KR +RHRGKVK FPKDD KP HLTAF+GYKAGMTHIVRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVE 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
+PGSK++KKE EAVTI+ETPP+VIVG++ YV+TP GLR+ +VWA+HLS++ RRRFYKN
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W KS++KAFTK + K+ GKK I L KM KY ++RVIAHTQ +
Sbjct: 122 WCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIR------------ 169
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
K+ +QKKAHLMEIQ+NGG++ADK+ + + E+ +
Sbjct: 170 -----------------------KMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEV 206
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEM 305
PV VF +DEM+D IGVTKGKG++G +
Sbjct: 207 PVEAVFQKDEMVDIIGVTKGKGYEGVV 233
Score = 141 bits (357), Expect = 4e-37
Identities = 85/173 (49%), Positives = 113/173 (65%)
Query: 264 ADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEI 323
+ K A+ + L+ G+ Q ++ K+ +QKKAHLMEI
Sbjct: 125 SKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGLKQKKAHLMEI 184
Query: 324 QLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRK 383
Q+NGG++ADK+ + + E+ +PV VF +DEM+D IGVTKGKG++GV +RW +LPRK
Sbjct: 185 QVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRK 244
Query: 384 THKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG 436
TH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKKIY+MG
Sbjct: 245 THRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHE 297
Score = 140 bits (354), Expect = 9e-37
Identities = 82/135 (60%), Positives = 98/135 (72%), Gaps = 3/135 (2%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFL-CKK 494
G V +RW +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+ K
Sbjct: 228 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYK 287
Query: 495 KYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKL 554
S + A T++D TEK ITPMGGFPHYG V D+LMIKGCC+GPKKRV+TLR +
Sbjct: 288 MGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR--QS 345
Query: 555 LKKRQKKAHLMEIQL 569
L K+ + L EI+L
Sbjct: 346 LLKQTSRLALEEIKL 360
Score = 60.6 bits (146), Expect = 6e-10
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 492 CKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
++++ K+ K + G E+ +K + T +
Sbjct: 114 VRRRFYKNWCKSKKKAFTKYALKYDSDAG----KKEIQLQLEKMKKYATIVRVIAHTQIR 169
Query: 552 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 611
K+ +QKKAHLMEIQ+NGG++ADK+ + + E+ +PV VF +DEM+D IGVTKGKG
Sbjct: 170 -KMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKG 228
Query: 612 FKECVH 617
++ V
Sbjct: 229 YEGVVT 234
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 403
Score = 248 bits (635), Expect = 1e-76
Identities = 175/267 (65%), Positives = 205/267 (76%), Gaps = 36/267 (13%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W+KS++KAFTK KKWQD GKK + +D M KYC+VIRVIAHT
Sbjct: 122 WHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
QM+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEM 305
PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKGVT 232
Score = 142 bits (358), Expect = 4e-37
Identities = 102/135 (75%), Positives = 119/135 (88%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID IGVTKGKG
Sbjct: 168 MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKG 227
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+NKKIY++
Sbjct: 228 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 287
Query: 428 GAGIHTKDGKVSVTS 442
G G KDGK+ +
Sbjct: 288 GQGYLIKDGKLIKNN 302
Score = 140 bits (353), Expect = 2e-36
Identities = 91/147 (61%), Positives = 107/147 (72%), Gaps = 9/147 (6%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G VTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV F+VARAGQKGYHHRTE+
Sbjct: 221 GVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI 280
Query: 490 FL-------CKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGP 542
+IKNNASTDYDL++KSI P+GGF HYGEV NDF+M+KGC +G
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340
Query: 543 KKRVITLRKMKLLKKRQKKAHLMEIQL 569
KKRV+TLR K L + K+ L +I L
Sbjct: 341 KKRVLTLR--KSLLVQTKRRALEKIDL 365
Score = 60.6 bits (146), Expect = 6e-10
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RVI +M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV QVF QDEMID I
Sbjct: 161 RVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVI 220
Query: 605 GVTKGKGFKECVH 617
GVTKGKG+K
Sbjct: 221 GVTKGKGYKGVTS 233
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B
3izc_C 3izs_C 1s1i_C 3jyw_C
Length = 387
Score = 238 bits (609), Expect = 5e-73
Identities = 141/267 (52%), Positives = 180/267 (67%), Gaps = 38/267 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRK+ APRHG +GF P+KR+A R +VK FPKDD +KPV LT+F+GYKAGMT IVR+ D
Sbjct: 2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
RPGSK +K+E+VEAVT+++TPP+V+VGV+GYVETP GLRS TVWAEHLS E +RRFYKN
Sbjct: 62 RPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
WYKS++KAFTK S K+ I ++L ++ KY V+RV+ HT
Sbjct: 122 WYKSKKKAFTKYSAKYAQDGAG--IERELARIKKYASVVRVLVHT--------------- 164
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
Q++ QKKAHL EIQLNGGS+++K+ WAR+H E+ +
Sbjct: 165 ---------------------QIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTV 203
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEM 305
V VF Q+EMID I VTKG GF+G
Sbjct: 204 AVDSVFEQNEMIDAIAVTKGHGFEGVT 230
Score = 138 bits (347), Expect = 9e-36
Identities = 73/134 (54%), Positives = 93/134 (69%), Gaps = 2/134 (1%)
Query: 436 GKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKK 495
G VT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT + +
Sbjct: 225 GFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYR 284
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLL 555
+ N +T +D T+K+ITPMGGF HYGE+ NDF+M+KGC G +KR++TLR K L
Sbjct: 285 VGKGDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLR--KSL 342
Query: 556 KKRQKKAHLMEIQL 569
+ L E+ L
Sbjct: 343 YTNTSRKALEEVSL 356
Score = 137 bits (346), Expect = 1e-35
Identities = 84/139 (60%), Positives = 103/139 (74%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG G
Sbjct: 166 IRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHG 225
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F+GVT RW TKKLPRKTH+GLRKVACIGAWHP+ V ++VARAGQ+GYH RT +N KIYR+
Sbjct: 226 FEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRV 285
Query: 428 GAGIHTKDGKVSVTSRWHT 446
G G +G S T
Sbjct: 286 GKGDDEANGATSFDRTKKT 304
Score = 61.4 bits (148), Expect = 3e-10
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 545 RVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCI 604
RV+ +++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I
Sbjct: 159 RVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 218
Query: 605 GVTKGKGFKECVH 617
VTKG GF+ H
Sbjct: 219 AVTKGHGFEGVTH 231
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_B 4a1c_B 4a1e_B
Length = 391
Score = 230 bits (586), Expect = 2e-69
Identities = 131/267 (49%), Positives = 174/267 (65%), Gaps = 40/267 (14%)
Query: 39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
SHRKF APRHGS+GF P++R+ HRG+ + FPKDDP+K HLTAF G+KAGMTHI+RE D
Sbjct: 2 SHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREVD 61
Query: 99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
R GS+ NKKE+VEAVT++E PPM IVGV+GY++TP GLR+ TVWA+ + ++RFYKN
Sbjct: 62 RSGSRHNKKEVVEAVTVIECPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
W S +KAFT K + +K L+++ KYC V+RVIAHT
Sbjct: 122 WANSNKKAFTHHEKNFD----QKAQDLLLKRIEKYCSVVRVIAHT--------------- 162
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
M L RQKK H++EIQ+NGG VA+K+A+A+ LE+ +
Sbjct: 163 ---------------------NMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEV 201
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEM 305
V +FA++EM+D +GVTKGKGF G +
Sbjct: 202 KVDSIFAENEMLDVLGVTKGKGFAGVI 228
Score = 146 bits (369), Expect = 9e-39
Identities = 76/140 (54%), Positives = 93/140 (66%), Gaps = 2/140 (1%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEL 489
G+ G V R+ K L +KTH+G RKV CIGAWHPSR++FTV RAGQ GYHHRTE
Sbjct: 217 GVTKGKGFAGVIKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTET 276
Query: 490 FLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITL 549
+ +NAST D+T+K+ITP+GGFPHYG V NDF+MIKGCC+GPKKRV+TL
Sbjct: 277 NKKVYRVGKGDDASNASTAGDVTDKAITPLGGFPHYGVVKNDFIMIKGCCVGPKKRVLTL 336
Query: 550 RKMKLLKKRQKKAHLMEIQL 569
R K + + A I L
Sbjct: 337 R--KSIIPQTHGAAKEIINL 354
Score = 134 bits (337), Expect = 2e-34
Identities = 76/130 (58%), Positives = 98/130 (75%)
Query: 308 MKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKG 367
M L RQKK H++EIQ+NGG VA+K+A+A+ LE+ + V +FA++EM+D +GVTKGKG
Sbjct: 164 MSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKG 223
Query: 368 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRM 427
F GV R+ K L +KTH+G RKV CIGAWHPSR++FTV RAGQ GYHHRTE NKK+YR+
Sbjct: 224 FAGVIKRFGVKHLQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRV 283
Query: 428 GAGIHTKDGK 437
G G +
Sbjct: 284 GKGDDASNAS 293
Score = 52.5 bits (125), Expect = 2e-07
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 500 VIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQ 559
K + +K+ T + I+ C RVI M L RQ
Sbjct: 114 TKKRFYKNWANSNKKAFTHHEKNFDQKAQDLLLKRIEKYC--SVVRVIAHTNMSKLNLRQ 171
Query: 560 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECV 616
KK H++EIQ+NGG VA+K+A+A+ LE+ + V +FA++EM+D +GVTKGKGF +
Sbjct: 172 KKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVI 228
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B*
1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B*
1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B*
1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Length = 338
Score = 207 bits (527), Expect = 1e-61
Identities = 74/266 (27%), Positives = 101/266 (37%), Gaps = 54/266 (20%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ S PR GS+GF P+KRS + +P DD V F GYKAGMTH+V D P
Sbjct: 3 QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPN 60
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 61 SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDH 120
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
A + A +R+I HT
Sbjct: 121 DPDAAEEQIRDAH---------------EAGDLGDLRLITHTVPDAVPSV---------- 155
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP--IP 279
+KK +ME ++ GGSV+D++ A +E
Sbjct: 156 -------------------------PKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHA 190
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEM 305
+ +F E D GVTKGKG +G +
Sbjct: 191 MNDIFRAGEYADVAGVTKGKGTQGPV 216
Score = 137 bits (346), Expect = 4e-36
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP--IPVGQVFAQDEMIDCIGVTKGK 366
+ +KK +ME ++ GGSV+D++ A +E + +F E D GVTKGK
Sbjct: 151 AVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGK 210
Query: 367 GFKGVTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKI 424
G +G RW +K K + R++ +G W+PSRV+ TV + GQ GYH RTELNK++
Sbjct: 211 GTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRL 270
Query: 425 YRMGAG 430
+G G
Sbjct: 271 IDIGEG 276
Score = 126 bits (318), Expect = 3e-32
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 430 GIHTKDGKVSVTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRT 487
G+ G RW +K K + R++ +G W+PSRV+ TV + GQ GYH RT
Sbjct: 205 GVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRT 264
Query: 488 ELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVI 547
EL K+ + + T GGF +YGEV+ + ++KG GP KR++
Sbjct: 265 EL---NKRLIDIG-----------EGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLV 310
Query: 548 TLRKMKLLKKRQKKAHLMEI 567
R ++ + E+
Sbjct: 311 RFR--PAVRPNDQPRLDPEV 328
Score = 52.7 bits (126), Expect = 2e-07
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 541 GPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP--IPVGQVFAQD 598
G + + + +KK +ME ++ GGSV+D++ A +E + +F
Sbjct: 139 GDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAG 198
Query: 599 EMIDCIGVTKGKGFKECVH 617
E D GVTKGKG + V
Sbjct: 199 EYADVAGVTKGKGTQGPVK 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 4e-08
Identities = 82/556 (14%), Positives = 155/556 (27%), Gaps = 192/556 (34%)
Query: 35 VKKASHRKFSAPRHGSM--------GFYPKKRSARHRGKVKCFPK------------DDP 74
+ S R + HGS+ + +++ + + F K D+P
Sbjct: 1 MDAYSTRPLTL-SHGSLEHVLLVPTASFF--IASQLQ---EQFNKILPEPTEGFAADDEP 54
Query: 75 TKPVHLTA-FIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETP 133
T P L F+GY + S + ++ + +L + E
Sbjct: 55 TTPAELVGKFLGYVS-------------SLVEPSKVGQFDQVLNL-------CLTEFENC 94
Query: 134 -------HGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKL------GK 180
H L + K + + + KN+ +R A KK L G
Sbjct: 95 YLEGNDIHALAA-KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 181 KTIA-----Q--------DLRKM-AKY-CKVIRVIAHTQNQQQSLHQNQQS----HTKDQ 221
+ Q +LR + Y V +I + L + T+
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 222 PIQSNVNK--TQPDSH---ESHVQMKLLKKRQKKAHLM----EIQLNGGSVADKIAWARQ 272
I + PD + L+ Q AH + + G + + A
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 273 HLEQPIPVGQVFAQ----DEMIDC----------IG--------------------VTKG 298
H Q + A+ + IG +
Sbjct: 273 HS-QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 299 KGFKGEMIAMKLLKKRQKKAHL------------MEIQL-NG-------GSVAD------ 332
+G M+++ L + Q + ++ +EI L NG G
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 333 ---KIAWARQHLEQP-IPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGL 388
K A L+Q IP F++ + + F V S +H+ L +
Sbjct: 392 TLRKAK-APSGLDQSRIP----FSERK------LKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 389 RKVACIG-AWHPSRVQFTVARAGQKGYH---------HRTELNKKIYRMGAGIHTKDGKV 438
+ + +++ +Q V Y ++++I I +
Sbjct: 441 KDLVKNNVSFNAKDIQIPV-------YDTFDGSDLRVLSGSISERIVDC---I------I 484
Query: 439 SVTSRWHTKKLPRKTH 454
+ +W T + TH
Sbjct: 485 RLPVKWETTTQFKATH 500
Score = 35.8 bits (82), Expect = 0.047
Identities = 41/265 (15%), Positives = 74/265 (27%), Gaps = 97/265 (36%)
Query: 148 SQEC--RRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQN 205
SQE YK K+ Q + +A ++D G +I + + H
Sbjct: 1626 SQEQGMGMDLYKT-SKAAQDVWNRADNHFKDTYGF-SILDIVINNPV-----NLTIHFGG 1678
Query: 206 QQ-QSLHQNQQSHT---------KDQPIQSNVNK-------------------TQPDSHE 236
++ + + +N + K + I +N+ TQP
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP---- 1734
Query: 237 SHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ--PIPVGQVFAQDEMIDCIG 294
A L + A A+ + L+ IP FA G
Sbjct: 1735 --------------A-LTLM-----EKA---AF--EDLKSKGLIPADATFA--------G 1761
Query: 295 ---------VTKGKGFKGEMIAMKLLKKR-QKKAHLMEIQLNGGSVADKIAWARQHLEQP 344
+ E ++++ R + G S IA P
Sbjct: 1762 HSLGEYAALASLADVMSIES-LVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN------P 1814
Query: 345 IPVGQVFAQD---EMIDCIGVTKGK 366
V F+Q+ +++ +G G
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGW 1839
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus}
Length = 211
Score = 49.0 bits (118), Expect = 9e-07
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 342 EQPIPVGQ-----VFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTH---KGLRKVAC 393
I G F + +D T GKGF+GV RW K P TH K R+
Sbjct: 89 NAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQP-ATHGQTKTHRRPGA 147
Query: 394 IGAWHPSRVQFTVARAGQKGYHHRTELNKKIYR 426
+ RV G+ G +RTE K++R
Sbjct: 148 VATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWR 180
Score = 33.2 bits (77), Expect = 0.16
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 275 EQPIPVGQ-----VFAQDEMIDCIGVTKGKGFKGEM 305
I G F + +D T GKGF+G M
Sbjct: 89 NAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVM 124
Score = 30.2 bits (69), Expect = 1.5
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 586 EQPIPVGQ-----VFAQDEMIDCIGVTKGKGF 612
I G F + +D T GKGF
Sbjct: 89 NAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGF 120
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B*
1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B
3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E
1vou_E 1vow_E 1voy_E ...
Length = 211
Score = 44.1 bits (105), Expect = 4e-05
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 346 PVGQ-----VFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTH---KGLRKVACIGAW 397
P G +FA+ E ID G +KGKG +GV RW+ P +H K R+ IG
Sbjct: 86 PDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGP-ASHGSKKWHRRPGSIGQR 144
Query: 398 H-PSRVQFTVARAGQKGYHHRTELNKKIYR 426
P RV AG G T N ++
Sbjct: 145 KTPGRVYKGKRMAGHMGMERVTVQNLEVVE 174
Score = 32.5 bits (75), Expect = 0.24
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 279 PVGQ-----VFAQDEMIDCIGVTKGKGFKGEM 305
P G +FA+ E ID G +KGKG +G M
Sbjct: 86 PDGDSVNVDIFAEGEKIDATGTSKGKGTQGVM 117
Score = 29.4 bits (67), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 590 PVGQ-----VFAQDEMIDCIGVTKGKGF 612
P G +FA+ E ID G +KGKG
Sbjct: 86 PDGDSVNVDIFAEGEKIDATGTSKGKGT 113
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E
2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E
2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Length = 206
Score = 44.0 bits (105), Expect = 4e-05
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 346 PVGQ-----VFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTH---KGLRKVACIGAW 397
P G +F E +D G +KG+GF GV RW+ P +H K R IG
Sbjct: 86 PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGP-DSHGAHKIHRHPGSIGNR 144
Query: 398 H-PSRVQFTVARAGQKGYHHRTELNKKIYR 426
P RV AG G T +N ++
Sbjct: 145 KTPGRVYKGKKMAGHYGAERVTVMNLEVVD 174
Score = 32.1 bits (74), Expect = 0.32
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 279 PVGQ-----VFAQDEMIDCIGVTKGKGFKGEM 305
P G +F E +D G +KG+GF G M
Sbjct: 86 PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVM 117
Score = 29.0 bits (66), Expect = 3.3
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 590 PVGQ-----VFAQDEMIDCIGVTKGKGF 612
P G +F E +D G +KG+GF
Sbjct: 86 PEGDTVTVEIFKPGERVDVTGTSKGRGF 113
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B
1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D
2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D
2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Length = 209
Score = 44.0 bits (105), Expect = 5e-05
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 345 IPVGQ-----VFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTH---KGLRKVACIGA 396
VGQ +FA + +D G +KGKGF G RW+ + TH R IG
Sbjct: 90 FTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQD-ATHGNSLSHRVPGSIGQ 148
Query: 397 WH-PSRVQFTVARAGQKGYHHRTELNKKIYR 426
P +V AGQ G T + + R
Sbjct: 149 NQTPGKVFKGKKMAGQMGNERVTVQSLDVVR 179
Score = 32.8 bits (76), Expect = 0.20
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 278 IPVGQ-----VFAQDEMIDCIGVTKGKGFKGEM 305
VGQ +FA + +D G +KGKGF G +
Sbjct: 90 FTVGQSISVELFADVKKVDVTGTSKGKGFAGTV 122
Score = 29.8 bits (68), Expect = 1.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 589 IPVGQ-----VFAQDEMIDCIGVTKGKGF 612
VGQ +FA + +D G +KGKGF
Sbjct: 90 FTVGQSISVELFADVKKVDVTGTSKGKGF 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 7e-05
Identities = 48/407 (11%), Positives = 113/407 (27%), Gaps = 111/407 (27%)
Query: 202 HTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQ-MKLLKKRQKKAHLMEIQ--- 257
T+ +Q S+ +D + ++ +V ++ K ++ L+E++
Sbjct: 99 KTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKY----NVSRLQPYLKLRQ--ALLELRPAK 151
Query: 258 ---LNG--GSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLK 312
++G GS + + V + C ++ + L K
Sbjct: 152 NVLIDGVLGS-------GKTWV-----ALDV-CLSYKVQC-------KMDFKIFWLNL-K 190
Query: 313 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFK--- 369
++E+ D +R I + Q E+ + K K ++
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCL 247
Query: 370 ----GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFT-----VARA--GQKGYHHRT 418
V + ++C ++ T V H
Sbjct: 248 LVLLNVQNAKAWNAF---------NLSC-------KILLTTRFKQVTDFLSAATTTHISL 291
Query: 419 ELNKKIYRMGAGIHTKDGKVSVTSRW---HTKKLPRKTHKGL-RKVACIGAW---HPSRV 471
+ + T D S+ ++ + LPR+ R+++ I +
Sbjct: 292 DHHSMTL-------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 472 QFTVARAGQKGYHHRTELFL-------CKKKYLSMVIKNNASTDYDLTEKSITPMGGFPH 524
E L +K + + + + ++ +
Sbjct: 345 DNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP---SAHIPTILLSLIWFDVI 400
Query: 525 YGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKA--HLMEIQL 569
+V ++ K L K L++K+ K++ + I L
Sbjct: 401 KSDV--MVVVNK------------LHKYSLVEKQPKESTISIPSIYL 433
Score = 38.7 bits (89), Expect = 0.006
Identities = 71/535 (13%), Positives = 142/535 (26%), Gaps = 162/535 (30%)
Query: 69 FPKD-------DPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPM 121
F + D K + L+ K + HI+ D + L +
Sbjct: 29 FVDNFDCKDVQDMPKSI-LS-----KEEIDHIIMSKDA------VSGTLRLFWTLLSKQE 76
Query: 122 VIVGVIGYVETPHGLRSFKTVW-AEHLSQECRRR--FYKNWYKSRQKAFTKASKKWQDKL 178
+V +VE ++K + + E R+ + + + R + +
Sbjct: 77 EMVQK--FVEEVLR-INYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYN---------- 121
Query: 179 GKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNV--------NKT 230
D + AKY V R Q + +Q+ + +P NV KT
Sbjct: 122 -------DNQVFAKY-NVSR--------LQPYLKLRQALLELRP-AKNVLIDGVLGSGKT 164
Query: 231 -------QPDSHESHVQMKL----LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 279
+ + K+ LK ++E+ D +R I
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLM---EIQ-------LNGG- 328
+ Q E+ +LLK + + L+ +Q N
Sbjct: 225 LRIHSIQAEL------------------RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 329 ---------SVADKI-AWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRW--- 375
V D + A H+ DE+ K + ++
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEV------------KSLLLKYLDC 313
Query: 376 HTKKLPRKTHKGL-RKVACIGAW---HPSRVQF-------TVARAGQKGYHH-RTELNKK 423
+ LPR+ R+++ I + + + + +K
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 424 IYRMGAGIHTKDGKVS--VTSR-WH--TKKLPRKTHKGLRKVACIGAWHPSRVQFTVARA 478
++ + + + + S W K L K + + + T+
Sbjct: 374 MFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTI--- 426
Query: 479 GQKGYHHRTELFLCK---KKYL--SMVIKNNASTDYDLTEKSITPMGG--FPHYG 526
K + L S+V N +D + + + H G
Sbjct: 427 ---SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 29.8 bits (66), Expect = 3.7
Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 31/122 (25%)
Query: 519 MGGFPHYG------EVNNDFLMIKGCCMGPKKRV--ITLRKMKLLKKRQKKAHLMEIQLN 570
+ G G +V + + C M K + + L+ ++E+
Sbjct: 158 VLGS---GKTWVALDVCLSYKVQ--CKMDFK--IFWLNLKN------CNSPETVLEMLQK 204
Query: 571 GGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKEC------VHSNASCAK 624
D +R I + Q E+ + K K ++ C V NA
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLVLLNV-QNAKAWN 260
Query: 625 YF 626
F
Sbjct: 261 AF 262
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 259
Score = 43.8 bits (104), Expect = 8e-05
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 343 QPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTH--KGLRKVACIGAWH-P 399
Q + G++F + +++D G T GKGF+G R + K+ TH K R++ IGA P
Sbjct: 137 QKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQ-MTHGSKSHRQLGSIGAGTTP 195
Query: 400 SRVQFTVARAGQKGYHHRTELNKKIYR 426
RV G+ G R KI +
Sbjct: 196 GRVYKGKKMPGRMGGTKRKIRKLKIVK 222
Score = 34.9 bits (81), Expect = 0.057
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 276 QPIPVGQVFAQDEMIDCIGVTKGKGFKGEM 305
Q + G++F + +++D G T GKGF+G +
Sbjct: 137 QKLDFGELFKEGDLVDVSGTTIGKGFQGGI 166
Score = 31.9 bits (73), Expect = 0.50
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 587 QPIPVGQVFAQDEMIDCIGVTKGKGF 612
Q + G++F + +++D G T GKGF
Sbjct: 137 QKLDFGELFKEGDLVDVSGTTIGKGF 162
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 33.1 bits (76), Expect = 0.30
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 581 ARQHLEQPIPV-GQVFAQDEM--IDCIGVTKGKGFKECVHSNASCAK 624
A H E + + F + ID I ++G G + A+ A+
Sbjct: 50 ADHHAETFPKLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVAR 96
Score = 28.1 bits (63), Expect = 9.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 270 ARQHLEQPIPV-GQVFAQDEM--IDCIGVTKGKG 300
A H E + + F + ID I ++G G
Sbjct: 50 ADHHAETFPKLIKEAFEVVDKNEIDLIAFSQGPG 83
Score = 28.1 bits (63), Expect = 9.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 337 ARQHLEQPIPV-GQVFAQDEM--IDCIGVTKGKG 367
A H E + + F + ID I ++G G
Sbjct: 50 ADHHAETFPKLIKEAFEVVDKNEIDLIAFSQGPG 83
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum}
Length = 334
Score = 31.7 bits (73), Expect = 0.58
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 581 ARQHLEQPIPV-GQVFAQDEM----IDCIGVTKGKGFKECVHSNASCAK 624
A H E V + + ++ ID IG + G G + A+ A+
Sbjct: 49 AVHHSEVIDTVISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAAR 97
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn
dependent nucleotide phosphatase, metalloprotease,
hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus
abyssi} PDB: 2ivo_A 2ivp_A*
Length = 330
Score = 30.6 bits (70), Expect = 1.5
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 581 ARQHLEQPIPV-GQVFAQDEM----IDCIGVTKGKGFKECVHSNASCAK 624
A H P+ + ++ + ID I ++G G + A+ A+
Sbjct: 44 AEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGPGLGPALRVVATAAR 92
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.6
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 240 QMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 276
Q K L++ + +ME + + D W ++ EQ
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Score = 28.2 bits (62), Expect = 5.9
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 550 RKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 587
+ K L++ + +ME + + D W ++ EQ
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 5.8
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 10/29 (34%)
Query: 206 QQQSLHQNQQSHTKDQPIQSNVNKTQPDS 234
++Q+L + +Q+++ DS
Sbjct: 18 EKQALKK----------LQASLKLYADDS 36
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 27.6 bits (62), Expect = 6.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 597 QDEMIDCIGVTKGKGFKECVHSN--ASCAKYFKSL 629
+ DC V FK H N AS ++YF ++
Sbjct: 19 AGFLCDCTIVIGEFQFK--AHRNVLASFSEYFGAI 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.407
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,633,763
Number of extensions: 583318
Number of successful extensions: 1166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1152
Number of HSP's successfully gapped: 67
Length of query: 630
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 531
Effective length of database: 3,937,614
Effective search space: 2090873034
Effective search space used: 2090873034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)