RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16472
(630 letters)
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 184 bits (467), Expect = 2e-53
Identities = 76/280 (27%), Positives = 108/280 (38%), Gaps = 54/280 (19%)
Query: 42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
+ S PR GS+GF P+KRS + +P DD + F GYKAGMTH+V D P
Sbjct: 2 QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQP--GVQGFAGYKAGMTHVVLVNDEPN 59
Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
S E VT++ETPPM V + Y +TP+G R VW + E R
Sbjct: 60 SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDH 119
Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
A + A +R+I HT
Sbjct: 120 DPDAAEEQIRDA---------------HEAGDLGDLRLITHTVPD--------------- 149
Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP--IP 279
+ +KK +ME ++ GGSV+D++ A +E
Sbjct: 150 --------------------AVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHA 189
Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
+ +F E D GVTKGKG +G + + K++ K A
Sbjct: 190 MNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHAR 229
Score = 92.8 bits (230), Expect = 4e-21
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP--IPVGQVFAQDEMIDCIGVTKGK 366
+ +KK +ME ++ GGSV+D++ A +E + +F E D GVTKGK
Sbjct: 150 AVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGK 209
Query: 367 GFKGVTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKI 424
G +G RW +K K + R++ +G W+PSRV+ TV + GQ GYH RTELNK++
Sbjct: 210 GTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRL 269
Query: 425 YRMGAG 430
+G G
Sbjct: 270 IDIGEG 275
Score = 89.7 bits (222), Expect = 4e-20
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 439 SVTSRWHTKKLPRKTHKG--LRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKY 496
RW +K K + R++ +G W+PSRV+ TV + GQ GYH RTEL
Sbjct: 213 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTEL------- 265
Query: 497 LSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLK 556
N T GGF +YGEV+ + ++KG GP KR++ R ++
Sbjct: 266 -------NKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPA--VR 316
Query: 557 KRQKKAHLMEI 567
+ E+
Sbjct: 317 PNDQPRLDPEV 327
Score = 46.2 bits (109), Expect = 6e-06
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKK-RQKKAHLMEIQLNGGSVAD 576
P P E G R+IT + +KK +ME ++ GGSV+D
Sbjct: 116 PEDHDPDAAEEQIRDAHEAGDL--GDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSD 173
Query: 577 KIAWARQHLEQP--IPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
++ A +E + +F E D GVTKGKG + V
Sbjct: 174 RLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVK 216
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 74.3 bits (182), Expect = 8e-16
Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 3/140 (2%)
Query: 290 IDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 349
+ G + G A ++ K ++ G ++A + +
Sbjct: 40 LANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVE 99
Query: 350 VFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH---PSRVQFTV 406
+FA + +D G +KGKGF G RW+ + L P +V
Sbjct: 100 LFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGK 159
Query: 407 ARAGQKGYHHRTELNKKIYR 426
AGQ G T + + R
Sbjct: 160 KMAGQMGNERVTVQSLDVVR 179
Score = 50.4 bits (120), Expect = 1e-07
Identities = 16/116 (13%), Positives = 28/116 (24%), Gaps = 33/116 (28%)
Query: 439 SVTSRWHTKKLPRKTHKGLRKVACIGAWH---PSRVQFTVARAGQKGYHHRTELFLCKKK 495
RW+ + L P +V AGQ G T L
Sbjct: 120 GTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSL---- 175
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
V++ + + L++KG G + ++
Sbjct: 176 ---DVVRVD-----------------------AERNLLLVKGAVPGATGSDLIVKP 205
Score = 44.3 bits (104), Expect = 1e-05
Identities = 22/159 (13%), Positives = 44/159 (27%), Gaps = 22/159 (13%)
Query: 80 LTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSF 139
+ +G K GMT I G I VT++E + V +
Sbjct: 1 MIGLVGKKVGMTRIF---TEDGVSI-------PVTVIEVEANRVTQV----------KDL 40
Query: 140 KTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRV 199
+ + K F KA + L + +A+ + +
Sbjct: 41 ANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVEL 100
Query: 200 IAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESH 238
A + + + ++ +TQ +H +
Sbjct: 101 FADVKKVDVTGTSKGKGFAG--TVKRWNFRTQDATHGNS 137
Score = 28.9 bits (64), Expect = 1.3
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 1/108 (0%)
Query: 242 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 301
++ K ++ G ++A + ++FA + +D G +KGKGF
Sbjct: 59 RVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGF 118
Query: 302 KGEMIAMKL-LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 348
G + + L + + +G
Sbjct: 119 AGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMG 166
Score = 27.7 bits (61), Expect = 3.6
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 550 RKMKLLKKRQKK-AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 608
+K + K + ++ G ++A + ++FA + +D G +K
Sbjct: 55 KKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSK 114
Query: 609 GKGFKECVH 617
GKGF V
Sbjct: 115 GKGFAGTVK 123
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
thermophilus [TaxId: 274]}
Length = 205
Score = 67.4 bits (164), Expect = 2e-13
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 3/121 (2%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
+ K+ + + V + E ++F E +D G +KG+GF
Sbjct: 54 QNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGF 113
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWH---PSRVQFTVARAGQKGYHHRTELNKKIY 425
GV RW+ P + P RV AG G T +N ++
Sbjct: 114 AGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVV 173
Query: 426 R 426
Sbjct: 174 D 174
Score = 43.5 bits (102), Expect = 2e-05
Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 33/116 (28%)
Query: 439 SVTSRWHTKKLPRKTHKGLRKVACIGAWH---PSRVQFTVARAGQKGYHHRTELFLCKKK 495
V RW+ P + P RV AG G T + L
Sbjct: 115 GVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNL---- 170
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
V+ + L++KG GP ++ +R+
Sbjct: 171 ---EVVDVIP-----------------------EENLLLVKGAVPGPNGGLVIVRE 200
Score = 40.1 bits (93), Expect = 3e-04
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 83 FIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTV 142
+G K GMT I R+ VT++ P +V + + + +
Sbjct: 4 ILGVKVGMTRIFRDDRA-----------VPVTVILAGPCPVVQRRTPEKDGYT--AVQLG 50
Query: 143 WAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVI 197
+ + R ++ K+ + + T+ ++ K + V
Sbjct: 51 FLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVT 105
Score = 28.9 bits (64), Expect = 1.5
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 4/103 (3%)
Query: 242 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 301
+ K+ + + V + E ++F E +D G +KG+GF
Sbjct: 54 QNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGF 113
Query: 302 KGEMIAMKL----LKKRQKKAHLMEIQLNGGSVADKIAWARQH 340
G M K H + ++ ++
Sbjct: 114 AGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKM 156
Score = 28.5 bits (63), Expect = 2.1
Identities = 12/89 (13%), Positives = 25/89 (28%)
Query: 529 NNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 588
+ + V + K+ + + V + E
Sbjct: 30 PCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGD 89
Query: 589 IPVGQVFAQDEMIDCIGVTKGKGFKECVH 617
++F E +D G +KG+GF +
Sbjct: 90 TVTVEIFKPGERVDVTGTSKGRGFAGVMK 118
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 205
Score = 62.3 bits (151), Expect = 9e-12
Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 3/121 (2%)
Query: 309 KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 368
K +K K + + + +FA+ E ID G +KGKG
Sbjct: 54 KAERKVNKPMQGHFAKAGVAPTRILREFRGFAPDGDSVNVDIFAEGEKIDATGTSKGKGT 113
Query: 369 KGVTSRWHTKKLPRKTHKGLRKVACIGAWH---PSRVQFTVARAGQKGYHHRTELNKKIY 425
+GV RW+ P P RV AG G T N ++
Sbjct: 114 QGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVV 173
Query: 426 R 426
Sbjct: 174 E 174
Score = 43.9 bits (103), Expect = 2e-05
Identities = 19/116 (16%), Positives = 28/116 (24%), Gaps = 33/116 (28%)
Query: 439 SVTSRWHTKKLPRKTHKGLRKVACIGAWH---PSRVQFTVARAGQKGYHHRTELFLCKKK 495
V RW+ P P RV AG G T L
Sbjct: 115 GVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNL---- 170
Query: 496 YLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRK 551
V++ A + +++KG G ++ LR
Sbjct: 171 ---EVVEIRA-----------------------GENLILVKGAIPGANGGLVVLRS 200
Score = 31.1 bits (70), Expect = 0.30
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 21/87 (24%)
Query: 83 FIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTV 142
+G K GMT I K + VT++ P IV +
Sbjct: 4 ILGTKIGMTQIW-----------KNDRAIPVTVVLAGPCPIVQRKTAQTDGY-------- 44
Query: 143 WAEHLSQECRRRFYKNWYKSRQKAFTK 169
E + + + K Q F K
Sbjct: 45 --EAVQIGYAPKAERKVNKPMQGHFAK 69
>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 29.3 bits (65), Expect = 1.2
Identities = 10/57 (17%), Positives = 17/57 (29%)
Query: 339 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIG 395
+ + P QV A + +D T G G + + L + G
Sbjct: 35 EKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 91
>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 357
Score = 28.1 bits (62), Expect = 3.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 606 VTKGKGFKECVHSNASCAKYFKSLG 630
T GKG S SC K F+ +G
Sbjct: 33 TTPGKGLLAADESIGSCTKRFQPIG 57
>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
{Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
9986]}
Length = 363
Score = 28.0 bits (62), Expect = 3.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 606 VTKGKGFKECVHSNASCAKYFKSLG 630
V GKG S S AK +S+G
Sbjct: 23 VAPGKGILAADESTGSIAKRLQSIG 47
>d1a5ca_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase
{Plasmodium falciparum [TaxId: 5833]}
Length = 342
Score = 28.0 bits (62), Expect = 3.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 606 VTKGKGFKECVHSNASCAKYFKSLG 630
V GKG S + K F ++
Sbjct: 17 VQAGKGILAADESTQTIKKRFDNIK 41
>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 145
Score = 26.8 bits (59), Expect = 5.0
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 19 HGSMGFYPKKRSARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTK 76
H G K ++ RVK + + +V P D ++
Sbjct: 19 HNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFSR 76
>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
(Homo sapiens), liver isozyme [TaxId: 9606]}
Length = 360
Score = 27.3 bits (60), Expect = 5.4
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 606 VTKGKGFKECVHSNASCAKYFKSLG 630
V GKG S + + +
Sbjct: 23 VANGKGILAADESVGTMGNRLQRIK 47
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
1 (Tip47), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 226
Score = 26.7 bits (59), Expect = 8.4
Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 161 KSRQKAFTKASKKWQD--KLGKKTIAQDLRKMAKYCKVIRVIAHTQNQ--QQSLHQNQQS 216
+ R A+ + K Q+ + ++T+ Q L + + ++ + Q+ LHQ S
Sbjct: 44 RLRNHAYEHSLGKLQNARQKAQETLQQ-LTSVLGLMESVKQGVDQRLGEGQEKLHQMWLS 102
Query: 217 HTKDQPIQSNVNKTQPDSHESHVQM---KLLKKRQKKAHLMEIQLNG--GSVADKIAWAR 271
+ P + + +P+ E+ + ++ Q + + G V ++ AR
Sbjct: 103 WNQKTPQDAEKDPAKPEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQAR 162
Query: 272 QHLEQ 276
+
Sbjct: 163 SQVND 167
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
catalytic C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 26.6 bits (59), Expect = 9.0
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 583 QHLEQPIP-------VGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAKYFKSL 629
Q ++ P+ VG V DE + + KGF+ + S SC K F+
Sbjct: 161 QQVQAPVKLYSDWLSVGHV---DEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQ 211
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.407
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,371,469
Number of extensions: 113174
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 36
Length of query: 630
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 539
Effective length of database: 1,158,166
Effective search space: 624251474
Effective search space used: 624251474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)