BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16474
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 179 IAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDALEYDAHVLAG 237
+ + ++ C A+ + G+D +G++RV+G + +++L+ ++ + +D+ D HV+ G
Sbjct: 35 VPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTG 94
Query: 238 VLKLYLRELPEPLLTYALYEDWLAAAR 264
LK++ RELPEPL Y+ +E ++ A +
Sbjct: 95 ALKMFFRELPEPLFPYSFFEQFVEAIK 121
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLK 240
+++C R + G++ EGL+RV+G + ++ +K D K + ++ D +++ G LK
Sbjct: 28 VDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALK 87
Query: 241 LYLRELPEPLLTYALYEDWLAAAR 264
LY R+LP PL+TY Y ++ +A+
Sbjct: 88 LYFRDLPIPLITYDAYPKFIESAK 111
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLK 240
+++C R + G++ EGL+RV+G + ++ +K D K + ++ D +++ G LK
Sbjct: 289 VDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALK 348
Query: 241 LYLRELPEPLLTYALYEDWLAAAR 264
LY R+LP PL+TY Y ++ +A+
Sbjct: 349 LYFRDLPIPLITYDAYPKFIESAK 372
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI 222
+F L EHL G ++ ++ CT + + G+ +G++R++G AS ++RL+ D+ +
Sbjct: 21 VFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHV 79
Query: 223 KFEDALEY--DAHVLAGVLKLYLRELPEPLLTYALYEDWLAA 262
Y D H + + KLY RELP PLLTY LYE + A
Sbjct: 80 PDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDA 121
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA 219
+K ++C L + + +++C R + G+ EGL+RV+G ++ +K D
Sbjct: 269 IKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDR 328
Query: 220 HCIKFEDALEY--DAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
K + + D +++ G LKLY R+LP P++TY Y ++ AA+
Sbjct: 329 DGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAK 375
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA--H 220
+F PL ++ G + I+ R L +D+ GLFR +G S+++ L+ +
Sbjct: 20 VFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAID 79
Query: 221 CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWL 260
C+ +E YD +A +LK Y R+LPEPL+T L E +L
Sbjct: 80 CVNYEGQSAYD---VADMLKQYFRDLPEPLMTNKLSETFL 116
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 171 HLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL----DAHCIKFED 226
L IG I I+ C A+ G++E+GL+R+ G S+V++L + L A + E
Sbjct: 32 QLDSIGFSI---IKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEI 88
Query: 227 ALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
E++ + LK YLR LP PL+ Y ++ AA+
Sbjct: 89 CAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 126
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA-HCI 222
F PL++ L I +E C + G+ EGL+RV+G + ++ D H I
Sbjct: 23 FGMPLQD-LVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNI 81
Query: 223 KFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
++E + +AG LK + +LP+PL+ Y+L+ + L AA+
Sbjct: 82 NLV-SMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAK 122
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA-HCI 222
F PL++ L I +E C + G+ EGL+RV+G + ++ D H I
Sbjct: 13 FGMPLQD-LVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNI 71
Query: 223 KFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
++E + +AG LK + +LP+PL+ Y+L+ + L AA+
Sbjct: 72 NLV-SMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAK 112
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 183 IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKL 241
IE C + G+ EG++RV+G S+++ L+ D H + + ++ + +AG +K
Sbjct: 72 IERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEK-DFTVNTVAGAMKS 130
Query: 242 YLRELPEPLLTYALYEDWLAAAR 264
+ ELP+PL+ Y + D + A +
Sbjct: 131 FFSELPDPLVPYNMQIDLVEAHK 153
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 186 CTRALCQIGMDEEGLFRVTGGASKVKRLK-TCLDAHCIKFEDALEYDAHVLAGVLKLYLR 244
C + Q G+ E GL+R++G VK LK L + ++ D H + +LK +LR
Sbjct: 24 CVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVD-DIHAICSLLKDFLR 82
Query: 245 ELPEPLLTYALYEDWLAAA 263
L EPLLT+ L ++ AA
Sbjct: 83 NLKEPLLTFRLNRAFMEAA 101
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDA-HVLAGVLKLYLRELPEPLL 251
+ EG+FR + V+ ++ + + F+ +Y+A H+ A +LK +LRELPEPLL
Sbjct: 41 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD---QYNALHLPAVILKTFLRELPEPLL 97
Query: 252 TYALY 256
T+ LY
Sbjct: 98 TFDLY 102
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 180 AFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL 239
+F ++ CT I EGLFR +G ++K LK +D A D +AG+L
Sbjct: 85 SFLVDACTSLEDHI--HTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCD---IAGLL 139
Query: 240 KLYLRELPEPLLTYALYEDWLAA 262
K + RELPEP+L L+E L A
Sbjct: 140 KQFFRELPEPILPADLHEALLKA 162
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252
+ EG+FR + V+ ++ + + F+ E H+ A +LK +LRELPEPLLT
Sbjct: 42 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 99
Query: 253 YALY 256
+ LY
Sbjct: 100 FDLY 103
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252
+ EG+FR + V+ ++ + + F+ E H+ A +LK +LRELPEPLLT
Sbjct: 38 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 95
Query: 253 YALY 256
+ LY
Sbjct: 96 FDLY 99
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252
+ EG+FR + V+ ++ + + F+ E H+ A +LK +LRELPEPLLT
Sbjct: 77 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 134
Query: 253 YALY 256
+ LY
Sbjct: 135 FDLY 138
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 194 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252
+ EG+F + V+ ++ + + F+ E H+ A +LK +LRELPEPLLT
Sbjct: 69 ALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 126
Query: 253 YALY 256
+ LY
Sbjct: 127 FDLY 130
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 167 PLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFED 226
PL+E + ++ I L L + +E LF+ G +++++ CLD +
Sbjct: 187 PLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDT---SIPE 243
Query: 227 ALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263
+ H +A L ++L LPEP++ Y LY+ L +A
Sbjct: 244 TIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSA 280
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 167 PLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFED 226
PL+E + ++ I L L + +E LF+ G +++++ CLD +
Sbjct: 163 PLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDT---SIPE 219
Query: 227 ALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263
+ H +A L ++L LPEP++ Y LY+ L +A
Sbjct: 220 TIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSA 256
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 189 ALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPE 248
A+ + G++ L+R T +S + L+ LD D D HVLA K YL +LP
Sbjct: 35 AIEKKGLECSTLYR-TQSSSNLAELRQLLDCDTPSV-DLEMIDVHVLADAFKRYLLDLPN 92
Query: 249 PLLTYALYEDWLAAA 263
P++ A+Y + ++ A
Sbjct: 93 PVIPAAVYSEMISLA 107
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 190 LCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDA-HVLAGVLKLYLRELPE 248
L Q G +G+FR + + LK L++ E L+ ++ V+A VLK +LR +P
Sbjct: 37 LNQKGPLTKGIFRQSANVKSCRELKEKLNSGV---EVHLDCESIFVIASVLKDFLRNIPG 93
Query: 249 PLLTYALYEDWLAA 262
+ + LY+ W++
Sbjct: 94 SIFSSDLYDHWVSV 107
>pdb|3DJA|A Chain A, Crystal Structure Of Cpaf Solved With Mad
pdb|3DJA|B Chain B, Crystal Structure Of Cpaf Solved With Mad
Length = 579
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 152 NSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIG---MDEEGLFR-----V 203
+S + +PM P F L H A G K + I L IG + EGLFR V
Sbjct: 226 SSSLFYSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSV 285
Query: 204 TGGASKVKRLKTCLDAHCIKFEDALEYD 231
T G K ++ L ++D ++D
Sbjct: 286 TDGDGKSHKVG-FLRIPTYSWQDXEDFD 312
>pdb|3DOR|A Chain A, Crystal Structure Of Mature Cpaf
pdb|3DOR|B Chain B, Crystal Structure Of Mature Cpaf
pdb|3DPM|A Chain A, Structure Of Mature Cpaf Complexed With Lactacystin
pdb|3DPM|B Chain B, Structure Of Mature Cpaf Complexed With Lactacystin
Length = 583
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 152 NSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIG---MDEEGLFR-----V 203
+S + +PM P F L H A G K + I L IG + EGLFR V
Sbjct: 224 SSSLFYSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSV 283
Query: 204 TGGASKVKRLKTCLDAHCIKFEDALEYD 231
T G K ++ L ++D ++D
Sbjct: 284 TDGDGKSHKVG-FLRIPTYSWQDMEDFD 310
>pdb|3DPN|A Chain A, Crystal Structure Of Cpaf S499a Mutant
pdb|3DPN|B Chain B, Crystal Structure Of Cpaf S499a Mutant
Length = 583
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 152 NSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIG---MDEEGLFR-----V 203
+S + +PM P F L H A G K + I L IG + EGLFR V
Sbjct: 224 SSSLFYSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSV 283
Query: 204 TGGASKVKRLKTCLDAHCIKFEDALEYD 231
T G K ++ L ++D ++D
Sbjct: 284 TDGDGKSHKVG-FLRIPTYSWQDMEDFD 310
>pdb|3APA|A Chain A, Crystal Structure Of Human Pancreatic Secretory Protein
Zg16p
Length = 141
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 31/81 (38%)
Query: 11 HGRNPFDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNS 70
H N D + YYI+ + +V DYV + EE LH E++ Q++
Sbjct: 22 HSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSG 81
Query: 71 LILVNPMKPMFCQPLEEHLAL 91
K +F +L+
Sbjct: 82 KYKWYLKKLVFVTDKGRYLSF 102
>pdb|1EJ6|B Chain B, Reovirus Core
pdb|1EJ6|C Chain C, Reovirus Core
pdb|2CSE|V Chain V, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|W Chain W, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1275
Score = 30.8 bits (68), Expect = 0.80, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 34 ARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEE-HLALI 92
AR CE+ + +VD Q + + + TL +L L+ M PM+ Q L LA+I
Sbjct: 766 ARVCELMKNLVDNQRYQPGWTQSLVSSMRGTLDKLK---LIKSMTPMYLQQLAPVELAVI 822
Query: 93 GCKIAFP 99
+ FP
Sbjct: 823 APMLPFP 829
>pdb|3GHY|A Chain A, Crystal Structure Of A Putative Ketopantoate Reductase
From Ralstonia Solanacearum Molk2
pdb|3GHY|B Chain B, Crystal Structure Of A Putative Ketopantoate Reductase
From Ralstonia Solanacearum Molk2
Length = 335
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 72 ILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQV-RRLGNFVQDSYTTITLCHAS 130
IL +P+ FC + IG +I PIE A V R+LG F + + A
Sbjct: 227 ILDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGAF---KTSMLQDAEAG 283
Query: 131 RD------VIKQHEEALLHLNETLPQLNSLI 155
R ++ E LH+ PQ+++L+
Sbjct: 284 RGPLEIDALVASVREIGLHVGVPTPQIDTLL 314
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%)
Query: 176 GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVL 235
GC+ FP + + G+ EE F TG S K + C + ++ +
Sbjct: 67 GCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCN 126
Query: 236 AGVLKLYLRELPEPLLTYALYEDWL 260
++KL L + + +Y+D+L
Sbjct: 127 EALMKLELVHHGPMAVAFEVYDDFL 151
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%)
Query: 176 GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVL 235
GC+ FP + + G+ EE F TG S K + C + ++ +
Sbjct: 273 GCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCN 332
Query: 236 AGVLKLYLRELPEPLLTYALYEDWL 260
++KL L + + +Y+D+L
Sbjct: 333 EALMKLELVHHGPMAVAFEVYDDFL 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,780,944
Number of Sequences: 62578
Number of extensions: 297839
Number of successful extensions: 517
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 38
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)